Query 038007
Match_columns 230
No_of_seqs 131 out of 296
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lrv_A LRV, leucine-rich repea 23.8 26 0.00088 29.9 1.2 75 4-101 13-96 (244)
2 2jr2_A UPF0352 protein CPS_261 13.1 51 0.0017 24.7 0.5 20 50-69 41-60 (76)
3 3coq_A Regulatory protein GAL4 12.0 92 0.0031 21.4 1.5 17 2-18 1-17 (89)
4 2er8_A Regulatory protein Leu3 11.5 1.1E+02 0.0039 20.4 1.8 17 2-18 3-19 (72)
5 1pyi_A Protein (pyrimidine pat 11.3 1.1E+02 0.0036 21.5 1.7 17 2-18 4-20 (96)
6 1d66_A Protein (GAL4); protein 11.1 1.1E+02 0.0036 19.9 1.5 17 2-18 8-24 (66)
7 1r1f_A Palicourein; cyclotide, 10.0 99 0.0034 20.3 1.0 14 14-27 2-17 (37)
8 3dzy_D Peroxisome proliferator 9.4 90 0.0031 28.3 0.9 20 3-22 68-97 (419)
9 1bh4_A Circulin A; cyclic pept 9.4 1.3E+02 0.0045 18.8 1.4 12 15-26 1-12 (30)
10 1cld_A CD2-LAC9; zinc-binding 9.2 1.4E+02 0.0048 19.1 1.6 17 2-18 9-25 (61)
No 1
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=23.80 E-value=26 Score=29.87 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=45.0
Q ss_pred CChhhhhcc-----CCCCCC--CccccCCCCCCCchhhhhHHHHHHHHhccc--cHHHHHHcCCCCChHHHHHHhHHhhc
Q 038007 4 SCNGCRVLR-----KGCGEN--CSIRPCLQWIKSPQCQANATLFLAKFYGRA--GLVNLINAGPQDLRPAIFKSLLYEAC 74 (230)
Q Consensus 4 ~CAACK~lR-----RrC~~d--CilAPYFP~~~~pe~qana~~fvhKvFG~s--Nv~klL~~lp~~~R~~a~~SLvYEA~ 74 (230)
.|+.|.|+- -+|.++ |+..+|=+- +-+||... -+..++++-.++-|..+++.|
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~r-------------i~~~~~~~p~l~~~ll~d~~~~VR~~AA~~l----- 74 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVESGRQ-------------IDRFFRNNPHLAVQYLADPFWERRAIAVRYS----- 74 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSCHHH-------------HHHHHHHCGGGGGGGTTCSSHHHHHHHHTTS-----
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCcHHH-------------HHHHHcCCHHHHHHHhcCCCHHHHHHHHHhC-----
Confidence 699999998 789966 999876431 34555332 122333333445577777654
Q ss_pred ccccCCCCchhhhhhhhhHHHHHHHHH
Q 038007 75 GRIVNPIYGSVGLMWSGRWHLCQAAVE 101 (230)
Q Consensus 75 aR~~DPVyGcvGiI~~Lq~Ql~q~avE 101 (230)
|+.....++..-++.+...+++
T Consensus 75 -----~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 75 -----PVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp -----CGGGGGGGTTCSSHHHHHHHHT
T ss_pred -----CHHHHHHHccCcCHHHHHHHHH
Confidence 3444555555556777665554
No 2
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=13.08 E-value=51 Score=24.66 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.3
Q ss_pred HHHHHHcCCCCChHHHHHHh
Q 038007 50 LVNLINAGPQDLRPAIFKSL 69 (230)
Q Consensus 50 v~klL~~lp~~~R~~a~~SL 69 (230)
++++|+.+|+.+|..++++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56778899999999887654
No 3
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=12.01 E-value=92 Score=21.42 Aligned_cols=17 Identities=24% Similarity=0.757 Sum_probs=13.7
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
+.+|..||..+-+|...
T Consensus 1 ~~aC~~Cr~rK~kCd~~ 17 (89)
T 3coq_A 1 EQACDICRLKKLKCSKE 17 (89)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred CccchhhhccCCCCCCc
Confidence 46899999999899753
No 4
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=11.47 E-value=1.1e+02 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=13.1
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
..+|..|+-..-+|...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 46788888888888754
No 5
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=11.29 E-value=1.1e+02 Score=21.55 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=14.3
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
+.+|..||..+-+|...
T Consensus 4 ~~aC~~Cr~rK~kCd~~ 20 (96)
T 1pyi_A 4 RTACKRCRLKKIKCDQE 20 (96)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cchhHHHhccCcCcCCc
Confidence 56899999999999753
No 6
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=11.11 E-value=1.1e+02 Score=19.87 Aligned_cols=17 Identities=24% Similarity=0.757 Sum_probs=13.6
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
+.+|..|+..+-+|...
T Consensus 8 ~~aC~~Cr~rK~kCd~~ 24 (66)
T 1d66_A 8 EQACDICRLKKLKCSKE 24 (66)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred CchHHHHHhCcCcCCCc
Confidence 56899999988888753
No 7
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=9.98 E-value=99 Score=20.29 Aligned_cols=14 Identities=43% Similarity=1.063 Sum_probs=11.2
Q ss_pred CCCCCCcccc-C-CCC
Q 038007 14 GCGENCSIRP-C-LQW 27 (230)
Q Consensus 14 rC~~dCilAP-Y-FP~ 27 (230)
-|.+.|++-| | |.|
T Consensus 2 pCGEsCv~iP~Ct~t~ 17 (37)
T 1r1f_A 2 FCGETCRVIPVCTYSA 17 (37)
T ss_dssp CCSSCCSSSCSCSSGG
T ss_pred CcccceEEcccccccc
Confidence 4889999999 7 753
No 8
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=9.42 E-value=90 Score=28.33 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=13.4
Q ss_pred CCChhhhh------cc----CCCCCCCccc
Q 038007 3 VSCNGCRV------LR----KGCGENCSIR 22 (230)
Q Consensus 3 ~~CAACK~------lR----RrC~~dCilA 22 (230)
.+|.|||. ++ .+|..+|.+-
T Consensus 68 ~~C~~C~~FFrR~~~~~~~~~~c~~~C~~~ 97 (419)
T 3dzy_D 68 HACEGCKGFFRRTIRLKLIYDRCDLNCRIH 97 (419)
T ss_dssp BCCHHHHHHHHHHHTTTCCCCCCCSCCCCC
T ss_pred ccchhhhHHHccchhcccccccccCCCCcc
Confidence 47999992 11 1688888763
No 9
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=9.40 E-value=1.3e+02 Score=18.84 Aligned_cols=12 Identities=50% Similarity=1.414 Sum_probs=9.9
Q ss_pred CCCCCccccCCC
Q 038007 15 CGENCSIRPCLQ 26 (230)
Q Consensus 15 C~~dCilAPYFP 26 (230)
|.+.|++-|+|.
T Consensus 1 CGEsCv~~pC~t 12 (30)
T 1bh4_A 1 CGESCVWIPCIS 12 (30)
T ss_dssp CCCCCSSSCCSH
T ss_pred CCcceeeeEccC
Confidence 778899989874
No 10
>1cld_A CD2-LAC9; zinc-binding domain, transcription regulation; NMR {Kluyveromyces lactis} SCOP: g.38.1.1
Probab=9.17 E-value=1.4e+02 Score=19.12 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=13.0
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
+.+|..|+..+-+|...
T Consensus 9 ~~aC~~Cr~rk~kCd~~ 25 (61)
T 1cld_A 9 HQACDACRKKKWKCSKT 25 (61)
T ss_dssp -CCCHHHHHSCCCCCCC
T ss_pred chHHHHHHhcCCCcCCc
Confidence 46899999888888753
Done!