Query 038007
Match_columns 230
No_of_seqs 131 out of 296
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038007.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038007hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pyia1 g.38.1.1 (A:30-71) PPR 22.7 17 0.0013 21.8 1.5 17 2-18 2-18 (42)
2 d2otaa1 a.284.1.1 (A:7-68) Hyp 22.6 17 0.0013 24.5 1.6 20 50-69 35-54 (62)
3 d2dasa1 g.39.1.17 (A:8-56) Zin 17.4 21 0.0016 23.1 1.1 16 2-17 13-37 (49)
4 d1hdla_ g.68.1.2 (A:) Serine p 16.9 41 0.003 21.9 2.5 29 74-102 22-50 (55)
5 d1clda_ g.38.1.1 (A:) CD2-Lac9 16.3 31 0.0023 19.6 1.6 16 3-18 1-16 (33)
6 d3coqa1 g.38.1.1 (A:8-48) Gal4 16.2 28 0.002 20.5 1.4 15 3-17 2-16 (41)
7 d1zmec1 g.38.1.1 (C:31-66) PUT 12.1 42 0.0031 19.6 1.3 15 3-17 2-16 (36)
8 d3alca_ g.38.1.1 (A:) Ethanol 11.0 47 0.0034 21.1 1.4 15 2-16 11-25 (65)
9 d1h0za_ g.68.1.2 (A:) Serine p 10.1 59 0.0043 21.7 1.7 29 73-101 25-53 (68)
10 d2jrxa1 a.284.1.1 (A:1-75) Unc 9.8 84 0.0061 21.6 2.5 20 50-69 41-61 (75)
No 1
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.71 E-value=17 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=14.8
Q ss_pred CCCChhhhhccCCCCCC
Q 038007 2 RVSCNGCRVLRKGCGEN 18 (230)
Q Consensus 2 r~~CAACK~lRRrC~~d 18 (230)
|.+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 67899999999999764
No 2
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=22.60 E-value=17 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.3
Q ss_pred HHHHHHcCCCCChHHHHHHh
Q 038007 50 LVNLINAGPQDLRPAIFKSL 69 (230)
Q Consensus 50 v~klL~~lp~~~R~~a~~SL 69 (230)
++++|+++|+.+|..++++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56778889999999888764
No 3
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.39 E-value=21 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.956 Sum_probs=11.8
Q ss_pred CCCChhhh---------hccCCCCC
Q 038007 2 RVSCNGCR---------VLRKGCGE 17 (230)
Q Consensus 2 r~~CAACK---------~lRRrC~~ 17 (230)
+..|+.|| |||++++.
T Consensus 13 ~v~Ca~Ckk~lqKGQTAyqrkGs~~ 37 (49)
T d2dasa1 13 KITCANCKKPLQKGQTAYQRKGSAH 37 (49)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCC
T ss_pred EeEecccchHHhccchHHhhCCCcc
Confidence 56799998 67777653
No 4
>d1hdla_ g.68.1.2 (A:) Serine proteinase inhibitor lekti {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.86 E-value=41 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.0
Q ss_pred cccccCCCCchhhhhhhhhHHHHHHHHHH
Q 038007 74 CGRIVNPIYGSVGLMWSGRWHLCQAAVEA 102 (230)
Q Consensus 74 ~aR~~DPVyGcvGiI~~Lq~Ql~q~avEa 102 (230)
|-|..|||-|.=|.+..=.=.+|++..|.
T Consensus 22 Ctr~~~Pv~g~dGkty~NkC~~C~~~~e~ 50 (55)
T d1hdla_ 22 CPQDKKFFQSLDGIMFINKCATCKMILEK 50 (55)
T ss_dssp CCSCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCEeccHhHHHHHHHHH
Confidence 77899999999999999888888876554
No 5
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=16.28 E-value=31 Score=19.61 Aligned_cols=16 Identities=25% Similarity=0.790 Sum_probs=13.6
Q ss_pred CCChhhhhccCCCCCC
Q 038007 3 VSCNGCRVLRKGCGEN 18 (230)
Q Consensus 3 ~~CAACK~lRRrC~~d 18 (230)
.+|..||..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999864
No 6
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.21 E-value=28 Score=20.53 Aligned_cols=15 Identities=27% Similarity=0.829 Sum_probs=13.0
Q ss_pred CCChhhhhccCCCCC
Q 038007 3 VSCNGCRVLRKGCGE 17 (230)
Q Consensus 3 ~~CAACK~lRRrC~~ 17 (230)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999975
No 7
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.06 E-value=42 Score=19.57 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=12.6
Q ss_pred CCChhhhhccCCCCC
Q 038007 3 VSCNGCRVLRKGCGE 17 (230)
Q Consensus 3 ~~CAACK~lRRrC~~ 17 (230)
.+|..||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 478999999999975
No 8
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=10.97 E-value=47 Score=21.07 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=13.1
Q ss_pred CCCChhhhhccCCCC
Q 038007 2 RVSCNGCRVLRKGCG 16 (230)
Q Consensus 2 r~~CAACK~lRRrC~ 16 (230)
..+|-.||..+.+|.
T Consensus 11 ~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 11 NHSCDPCRKGKRRCD 25 (65)
T ss_dssp CCSCHHHHHTTCCCS
T ss_pred CHhHHHHHhccccCC
Confidence 458999999999995
No 9
>d1h0za_ g.68.1.2 (A:) Serine proteinase inhibitor lekti {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.08 E-value=59 Score=21.72 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=23.7
Q ss_pred hcccccCCCCchhhhhhhhhHHHHHHHHH
Q 038007 73 ACGRIVNPIYGSVGLMWSGRWHLCQAAVE 101 (230)
Q Consensus 73 A~aR~~DPVyGcvGiI~~Lq~Ql~q~avE 101 (230)
++-|..|||-|.=|....=.=.+|++..+
T Consensus 25 ~C~~~~~PvcG~dG~ty~N~C~~c~~~~~ 53 (68)
T d1h0za_ 25 ACTRENDPIQGPDGKVHGNTCSMCEVFFQ 53 (68)
T ss_dssp CCCCCSCCCBCTTSCBCSSHHHHHHHHHH
T ss_pred cCCCCCCccCCCCCCEecCHhHHHHHHHH
Confidence 47899999999999998877777776544
No 10
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=9.84 E-value=84 Score=21.62 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=15.6
Q ss_pred HHHHHH-cCCCCChHHHHHHh
Q 038007 50 LVNLIN-AGPQDLRPAIFKSL 69 (230)
Q Consensus 50 v~klL~-~lp~~~R~~a~~SL 69 (230)
++++|+ .+|+.+|..++++.
T Consensus 41 vTniln~~V~~~qR~~iAe~F 61 (75)
T d2jrxa1 41 VTNLINTSIAPAQRQAIANSF 61 (75)
T ss_dssp HHHHHHHHSCTTSHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 566775 69999999887654
Done!