BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038011
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 167/388 (43%), Gaps = 51/388 (13%)
Query: 103 LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT-KLVYLDXXXXXX-------------- 147
+ + ++R L LDLS+N GE+P + NL+ L+ LD
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 148 ------------XGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
G IP L + L L LS N + G + SS+ L L L L N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 196 QGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA 255
+G+IP E+ + +G IP N L+GEIP IG L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLH-DMKSLFLGGNK 314
N+ L LSNN+ +G IP + D L+ L L++N+ G IP +F + + F+ G +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 315 LKWNNNVSIVPKC---------------MLTELSLRS-CSVR-----GPMPLWLSNQTEL 353
+ N + +C L LS R+ C++ G N +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 354 AFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412
FLD+S N L G P+ + P L + L N ++GS+P + + R L++L LS N G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 413 ELPETMGQSTSVMVLMLSSNNFSGHVPK 440
+P+ M T + + LS+NN SG +P+
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 186/417 (44%), Gaps = 14/417 (3%)
Query: 34 LEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFP 93
L+ SL + DL+ NS + + G W S C + + S +V NL
Sbjct: 148 LKLNSLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 94 LD--SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSI 151
LD SN S + + +L LD+S N + G+ R + T+L L+ G I
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 263
Query: 152 PSQLFSLRYLEFLDLSTNAIGGKLSSSVAG-LKNLEQLILNGNSIQGQIPAEIGXXXXXX 210
P L+ L++L L+ N G++ ++G L L L+GN G +P G
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 211 XXXXXXXEFSGGIPXXXXXXXXXXXXXX-XXNSLSGEIPNDIGIL-ANMTTLALSNNALT 268
FSG +P N SGE+P + L A++ TL LS+N +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 269 GAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
G I ++ K L L L +N G+IP L + ++ SL L N L S+
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
L +L L + G +P L L L L N+L G P L+ NL + LS+N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
LTG +P + NL++L LS N+FSG +P +G S++ L L++N F+G +P ++
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 178/397 (44%), Gaps = 66/397 (16%)
Query: 57 LETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLD 116
L W+S+ + C ++ V C +VT +DLS+ PL+ ++ V + + L +L
Sbjct: 30 LPDWSSNKNPCTFDGVTC----RDDKVTSIDLSSK-PLNVGFSA-VSSSLLSLTGLESLF 83
Query: 117 LSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPS--QLFSLRYLEFLDLSTNAIG-- 172
LS + + G + +GF L LD G + + L S L+FL++S+N +
Sbjct: 84 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 173 GKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXX 232
GK+S + L +LE L L+ NSI G +G SG
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISG----------- 187
Query: 233 XXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
N +SG++ D+ N+ L +S+N + IP + D + L L + N L+
Sbjct: 188 --------NKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 293 GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352
G+ + ++K L + N+ V +P P+PL
Sbjct: 237 GDFSRAISTCTELKLLNISSNQF-----VGPIP----------------PLPL-----KS 270
Query: 353 LAFLDLSENELEGTYPQWL--AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
L +L L+EN+ G P +L A L + LS N G++PP L L LS NNF
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 411 SGELP-ETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
SGELP +T+ + + VL LS N FSG +P+S++NL+
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 167/388 (43%), Gaps = 51/388 (13%)
Query: 103 LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT-KLVYLDXXXXXX-------------- 147
+ + ++R L LDLS+N GE+P + NL+ L+ LD
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 148 ------------XGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
G IP L + L L LS N + G + SS+ L L L L N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 196 QGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA 255
+G+IP E+ + +G IP N L+GEIP IG L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLH-DMKSLFLGGNK 314
N+ L LSNN+ +G IP + D L+ L L++N+ G IP +F + + F+ G +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 315 LKWNNNVSIVPKC---------------MLTELSLRS-CSVR-----GPMPLWLSNQTEL 353
+ N + +C L LS R+ C++ G N +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 354 AFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412
FLD+S N L G P+ + P L + L N ++GS+P + + R L++L LS N G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 413 ELPETMGQSTSVMVLMLSSNNFSGHVPK 440
+P+ M T + + LS+NN SG +P+
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 186/417 (44%), Gaps = 14/417 (3%)
Query: 34 LEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFP 93
L+ SL + DL+ NS + + G W S C + + S +V NL
Sbjct: 145 LKLNSLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 94 LD--SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSI 151
LD SN S + + +L LD+S N + G+ R + T+L L+ G I
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 260
Query: 152 PSQLFSLRYLEFLDLSTNAIGGKLSSSVAG-LKNLEQLILNGNSIQGQIPAEIGXXXXXX 210
P L+ L++L L+ N G++ ++G L L L+GN G +P G
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 211 XXXXXXXEFSGGIPXXXXXXXXXXXXXX-XXNSLSGEIPNDIGIL-ANMTTLALSNNALT 268
FSG +P N SGE+P + L A++ TL LS+N +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 269 GAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
G I ++ K L L L +N G+IP L + ++ SL L N L S+
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
L +L L + G +P L L L L N+L G P L+ NL + LS+N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
LTG +P + NL++L LS N+FSG +P +G S++ L L++N F+G +P ++
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 178/397 (44%), Gaps = 66/397 (16%)
Query: 57 LETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLD 116
L W+S+ + C ++ V C +VT +DLS+ PL+ ++ V + + L +L
Sbjct: 27 LPDWSSNKNPCTFDGVTC----RDDKVTSIDLSSK-PLNVGFSA-VSSSLLSLTGLESLF 80
Query: 117 LSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPS--QLFSLRYLEFLDLSTNAIG-- 172
LS + + G + +GF L LD G + + L S L+FL++S+N +
Sbjct: 81 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 173 GKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXX 232
GK+S + L +LE L L+ NSI G +G SG
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISG----------- 184
Query: 233 XXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
N +SG++ D+ N+ L +S+N + IP + D + L L + N L+
Sbjct: 185 --------NKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 293 GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352
G+ + ++K L + N+ V +P P+PL
Sbjct: 234 GDFSRAISTCTELKLLNISSNQF-----VGPIP----------------PLPL-----KS 267
Query: 353 LAFLDLSENELEGTYPQWL--AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
L +L L+EN+ G P +L A L + LS N G++PP L L LS NNF
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 411 SGELP-ETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
SGELP +T+ + + VL LS N FSG +P+S++NL+
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 123/305 (40%), Gaps = 52/305 (17%)
Query: 23 LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSS 80
LC PQ K ALL+ K DL + ++ L +W ++DCC+ W V C + +
Sbjct: 2 LCNPQ-DKQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQT 49
Query: 81 KEVTGLDLSNL-FPLDSNVTSDVLKLIFRIRSLMTLDLSY----NAMKGEIPRTGFANLT 135
V LDLS L P + S + L + L+ Y N + G IP A LT
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-------LNFLYIGGINNLVGPIP-PAIAKLT 101
Query: 136 KLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
+L YL G+IP L ++ L LD S NA+ G L S++ L NL + +GN I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 196 QGQIPAEIGXXXX-XXXXXXXXXEFSGGIPXXXX-----------------------XXX 231
G IP G +G IP
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 232 XXXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
NSL+ ++ +G+ N+ L L NN + G +PQ + + L +L + N L
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 292 AGEIP 296
GEIP
Sbjct: 281 CGEIP 285
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 14/207 (6%)
Query: 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF 300
N+L G IP I L + L +++ ++GAIP + + LVTL N L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 301 DLHDMKSLFLGGNKLKWNNNVSIVPKC------MLTELSLRSCSVRGPMPLWLSNQTELA 354
L ++ + GN++ +P + T +++ + G +P +N LA
Sbjct: 147 SLPNLVGITFDGNRIS-----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLA 200
Query: 355 FLDLSENELEGTYPQWL-AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413
F+DLS N LEG ++ N + L+ N L L ++ S+NL+ L L N G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259
Query: 414 LPETMGQSTSVMVLMLSSNNFSGHVPK 440
LP+ + Q + L +S NN G +P+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 341 GPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRN 399
GP+P ++ T+L +L ++ + G P +L++ L T+ S N L+G+LPP + N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 400 LSVLVLSRNNFSGELPETMGQSTSVMVLM-LSSNNFSGHVPKSISNLTL 447
L + N SG +P++ G + + M +S N +G +P + +NL L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 356 LDLSENELEGTYPQWLAEPNLGTV----ILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
LDLS L YP + NL + I N L G +PP + + L L ++ N S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 412 GELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
G +P+ + Q +++ L S N SG +P SIS+L
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 78 GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTG 130
G SK + GLDL N + + + + + +++ L +L++S+N + GEIP+ G
Sbjct: 241 GLSKNLNGLDLRN-----NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 247 IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDM 305
+P ++ ++T + LSNN ++ QS +MT+L+TL L N L IP FD L +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
+ L L G N++S+VP+ +LS S G PL+
Sbjct: 105 RLLSLHG------NDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNL 400
+P LSN L +DLS N + Q + L T+ILS N L +PPR F+ ++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104
Query: 401 SVLVLSRNNFS 411
+L L N+ S
Sbjct: 105 RLLSLHGNDIS 115
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 89/242 (36%), Gaps = 17/242 (7%)
Query: 151 IPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS----IQGQIPAEIGX 205
+P+ F S R L L L +NA+ G +++ GL LEQL L+ N+ + +G
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 206 XXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTLALSNN 265
E G+ N+L N L N+T L L N
Sbjct: 106 LHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP 325
+ + R + L L L N +A P DL + +L+L N L +VP
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVP 222
Query: 326 KCMLTELSLRS----CSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVIL 381
L L L C R PLW L S +E+ PQ LA +L +
Sbjct: 223 LRSLQYLRLNDNPWVCDCRA-RPLW----AWLQKFRGSSSEVPCNLPQRLAGRDLKRLAA 277
Query: 382 SD 383
SD
Sbjct: 278 SD 279
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 68/183 (37%), Gaps = 28/183 (15%)
Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI-PTWLFDLHDMKSLFLGGNK 314
N+T L L +NAL G + +T L L L N + PT L + +L L
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD--- 112
Query: 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE- 373
+C L EL P L +L L +N L+ +
Sbjct: 113 -----------RCGLQELG----------PGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Query: 374 PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN 432
NL + L N + S+P F +L L+L +N+ + P +M L L +N
Sbjct: 152 GNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
Query: 433 NFS 435
N S
Sbjct: 211 NLS 213
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 4/189 (2%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+GI A + L N ++ S R L L L SNVLA L ++ L L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 311 GGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
N +L+ + + L L L C ++ P L +L L +N L+
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 370 WLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVL 427
+ NL + L N ++ S+P R F +L L+L +N + P +M L
Sbjct: 147 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 205
Query: 428 MLSSNNFSG 436
L +NN S
Sbjct: 206 YLFANNLSA 214
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 94 LDSNVTSDVLKLIFRIRSLM-TLDLSYNAMKGEIPRTGFANLTKL--VYLDXXXXXXXGS 150
L SNV + + F +L+ LDLS NA + F L +L ++LD G
Sbjct: 62 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG- 120
Query: 151 IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
P L L++L L NA+ + L NL L L+GN I
Sbjct: 121 -PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 4/189 (2%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+GI A + L N ++ S R L L L SNVLA L ++ L L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 311 GGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
N +L+ + + L L L C ++ P L +L L +N L+
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 370 WLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVL 427
+ NL + L N ++ S+P R F +L L+L +N + P +M L
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 428 MLSSNNFSG 436
L +NN S
Sbjct: 207 YLFANNLSA 215
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 94 LDSNVTSDVLKLIFRIRSLM-TLDLSYNAMKGEIPRTGFANLTKL--VYLDXXXXXXXGS 150
L SNV + + F +L+ LDLS NA + F L +L ++LD G
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG- 121
Query: 151 IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
P L L++L L NA+ + L NL L L+GN I
Sbjct: 122 -PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 102 VLKLIF-RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLF-SLR 159
+LK +F L L L+ N + +I F LT L+ L+ GSI S++F +L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD 347
Query: 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
LE LDLS N I S GL NL++L L+ N ++
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
IP+D+ +N+T L L++N L P + ++L L N ++ P L +
Sbjct: 18 HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
K L L N+L ++ + V LTEL L S S+ NQ L LDLS N L
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 366 T 366
T
Sbjct: 136 T 136
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 79 SSKEVTGLDLSNLFPLD--SNVTSDVLKLIF-RIRSLMTLDLSYNAMKGEIPRTGFANLT 135
S +GL +NL LD N DV F + SL L L YN ++ PR+ F L+
Sbjct: 238 SESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS-FYGLS 296
Query: 136 KLVYLDXXXXXXXGSI-----PS-QLFS---LRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186
L YL S+ P+ FS L+YLE+L++ N I S++ GL +L+
Sbjct: 297 NLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLK 356
Query: 187 QLIL 190
L L
Sbjct: 357 YLSL 360
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 72 VRCFSRGSSKEVTGLDLSNLFPLDSNV-TSDVLKLIFR-IRSLMTLDLSYNAMKGEIPRT 129
RC + + + LDLS+ S++ SD L + +R L L+LSYN G +
Sbjct: 342 TRCLEK--LENLQKLDLSH-----SDIEASDCCNLQLKNLRHLQYLNLSYNEPLG-LEDQ 393
Query: 130 GFANLTKLVYLDXXXXXXXGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL 188
F +L LD P F +L L L+LS + +AGL++L L
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 189 ILNGNSIQ 196
L GNS Q
Sbjct: 454 NLQGNSFQ 461
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 254 LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGG 312
L +T L L N L D+T+L TL L +N LA +P +FD L + L+LGG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 313 NKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364
N+LK + L EL L + ++ T L L LS N+L+
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 254 LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGG 312
L +T L L N L D+T+L TL L +N LA +P +FD L + L+LGG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 313 NKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364
N+LK + L EL L + ++ T L L LS N+L+
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 252 GILAN---MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308
GI N +TTL++SNN L + + T L L+L SN L DL + SL
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------VDLSLIPSL 188
Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCS---VRGPMPLWLSNQTELAFLDLSENELEG 365
F + +N ++ + EL S VRGP+ EL L L N L
Sbjct: 189 FHAN--VSYNLLSTLAIPIAVEELDASHNSINVVRGPV------NVELTILKLQHNNLTD 240
Query: 366 TYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSV 424
T WL P L V LS N L + + + L L +S N GQ
Sbjct: 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPT 296
Query: 425 MVLMLSSNNFSGHVPKS 441
+ ++ S+N HV ++
Sbjct: 297 LKVLDLSHNHLLHVERN 313
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXG-SIPSQLFSLRYLEFLD 165
F SL LDLS+N + + F L +L +LD S S SLR L +LD
Sbjct: 75 FGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
+S + GL +LE L + GNS Q +I
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 245 GEIPND--IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-D 301
G I +D G L ++ L L N LTG P + + + L+L N + EI +F
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG 100
Query: 302 LHDMKSLFLGGNKLKWNNNVSIV 324
LH +K+L L ++N +S V
Sbjct: 101 LHQLKTLNL------YDNQISCV 117
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 217
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 218 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 311 GGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL-WLSNQTELAFLDLSENELEGTYP 368
N++ I P LT L+ S + LS T L L+ S N++ P
Sbjct: 115 FNNQI-----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP 168
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 242
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 243 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 298
Query: 367 YP 368
P
Sbjct: 299 SP 300
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 216
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 217 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 255 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 311 GGNKL 315
N++
Sbjct: 115 FNNQI 119
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 241
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 242 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 297
Query: 367 YP 368
P
Sbjct: 298 SP 299
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 217
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 218 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 311 GGNKLK----------------WNNNVSIVPK----CMLTELSLRSCSVRGPMPLWLSNQ 350
N++ +N +S + L +LS S V P L+N
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 351 TELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNN 409
T L LD+S N++ LA+ NL ++I ++N ++ P + NL L L+ N
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQ 228
Query: 410 FSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441
T+ T++ L L++N S P S
Sbjct: 229 LKD--IGTLASLTNLTDLDLANNQISNLAPLS 258
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 242
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 243 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 298
Query: 367 YP 368
P
Sbjct: 299 SP 300
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 221
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 222 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 311 GGNKL 315
N++
Sbjct: 120 FNNQI 124
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 246
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 247 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 302
Query: 367 YP 368
P
Sbjct: 303 SP 304
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXG-SIPSQLFSLRYLEFLD 165
F SL LDLS+N + + F L +L +LD S S SLR L +LD
Sbjct: 370 FGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
+S + GL +LE L + GNS Q +I
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 216
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 217 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 255 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 311 GGNKL 315
N++
Sbjct: 115 FNNQI 119
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 241
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 242 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 297
Query: 367 YP 368
P
Sbjct: 298 SP 299
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 217
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 218 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 311 GGNKLK----------------WNNNVSIVPK----CMLTELSLRSCSVRGPMPLWLSNQ 350
N++ +N +S + L +LS S V P L+N
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 351 TELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLP 391
T L LD+S N++ LA+ NL ++I ++N ++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 242
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 243 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 298
Query: 367 YP 368
P
Sbjct: 299 SP 300
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 40/165 (24%)
Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXX 214
L +L LE LD+S+N + S +A L NLE LI N I P I
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI---------LT 220
Query: 215 XXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA---NMTTLALSNNALTGAI 271
E S L+G DIG LA N+T L L+NN ++
Sbjct: 221 NLDELS----------------------LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 258
Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
P + +TKL L+L +N ++ P L L + +L L N+L+
Sbjct: 259 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 299
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 250 DIGILA---NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
DI +LA N+ +L +NN ++ P I +T L L L+ N L +I T L L ++
Sbjct: 190 DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT-LASLTNLT 245
Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
L L N++ N + LTEL L + + PL + T L L+L+EN+LE
Sbjct: 246 DLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 301
Query: 367 YP 368
P
Sbjct: 302 SP 303
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
+ L N+T + SNN LT P ++++TKLV + +++N +A P L +L ++ L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 311 GGNKL 315
N++
Sbjct: 119 FNNQI 123
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 31/160 (19%)
Query: 252 GILAN---MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308
GI N +TTL++SNN L + + T L L+L SN L DL + SL
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------VDLSLIPSL 194
Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCS---VRGPMPL----------------WLSN 349
F + +N ++ + EL S VRGP+ + WL N
Sbjct: 195 FHAN--VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 252
Query: 350 QTELAFLDLSENELEGT-YPQWLAEPNLGTVILSDNMLTG 388
L +DLS NELE Y ++ L + +S+N L
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXG-SIPSQLFSLRYLEFLD 165
F SL LDLS+N + + F L +L +LD S S SLR L +LD
Sbjct: 370 FGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
+S + GL +LE L + GNS Q +I
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 254 LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLG 311
L N+T L L +N L ++P+ + D +T L L LD+N L +P +FD L +K L L
Sbjct: 132 LTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLN 189
Query: 312 GNKLK 316
N+LK
Sbjct: 190 DNQLK 194
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
++P+D+ N+T L L++N L + ++L +L + N ++ P L +
Sbjct: 28 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
K L L N+L ++ + LTEL L S S++ Q L LDLS N L
Sbjct: 86 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Query: 366 T 366
T
Sbjct: 146 T 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
++P+D+ N+T L L++N L + ++L +L + N ++ P L +
Sbjct: 23 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
K L L N+L ++ + LTEL L S S++ Q L LDLS N L
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Query: 366 T 366
T
Sbjct: 141 T 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
++P+D+ N+T L L++N L + ++L +L + N ++ P L +
Sbjct: 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
K L L N+L ++ + LTEL L S S++ Q L LDLS N L
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 366 T 366
T
Sbjct: 136 T 136
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXG-SIPSQLFSLRYLEFLD 165
F SL LDLS+N + + F L +L +LD S S SLR L +LD
Sbjct: 394 FGTISLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451
Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
+S + GL +LE L + GNS Q +I
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFL 310
GI + L L+NN +T P + L L +SN L IPT +FD L + L L
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDL 88
Query: 311 GGNKLK 316
N LK
Sbjct: 89 NDNHLK 94
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 254 LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLG 311
L N+ TL +++N L A+P + D + L LRLD N L +P +FD L + L LG
Sbjct: 84 LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLG 141
Query: 312 GNKLKWNNNVSIVPKCM------LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364
N+L+ +PK + L EL L + ++ TEL L L N+L+
Sbjct: 142 YNELQ------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 151 IPSQLFS-LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
IP FS + L +DLS N I + GL++L L+L GN I
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 151 IPSQLFS-LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
IP FS + L +DLS N I + GL++L L+L GN I
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 111 SLMTLDLSYNAMK--GEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLST 168
++ +LDLS+N + G ANL L+ G +SL LE LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSD 109
Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
N + SS L +L+ L L GN Q
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 111 SLMTLDLSYNAMK--GEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLST 168
++ +LDLS+N + G ANL L+ G +SL LE LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSD 83
Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
N + SS L +L+ L L GN Q
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXX 144
GL+L++L N+T+ + + L L+LSYN + I + L +L +
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVG 281
Query: 145 XXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
P L YL L++S N + S + NLE LIL+ N +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWL 299
N +S P L N+ TL L +N L IP + ++ L L + N + +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 300 FDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV 339
DL+++KSL +G N L + ++ + L +L+L C++
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLF-SLRYLEFLDLS 167
+ L TL+LS+N G + F +L LD + P F +L +L+ L+L+
Sbjct: 372 LSHLQTLNLSHNEPLG-LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 168 TNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
+ +AGL L L L GN Q
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 251 IGILANMTTLALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF 309
I L N+T+L LSNN +T P Q + ++TKL L+ N L P L +L ++ LF
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQYLPNVTKLF---LNGNKLTDIKP--LANLKNLGWLF 116
Query: 310 LGGNKL 315
L NK+
Sbjct: 117 LDENKV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,463,603
Number of Sequences: 62578
Number of extensions: 368492
Number of successful extensions: 1194
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 243
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)