Query 038011
Match_columns 448
No_of_seqs 463 out of 4580
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-50 3.6E-55 435.9 35.4 401 26-446 27-452 (968)
2 PLN00113 leucine-rich repeat r 100.0 6E-43 1.3E-47 377.2 26.3 361 81-447 164-572 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.5E-37 1.2E-41 286.5 6.8 358 81-445 78-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.9E-36 1.1E-40 280.2 7.2 333 111-446 79-416 (873)
5 KOG0444 Cytoskeletal regulator 100.0 6.6E-34 1.4E-38 268.0 -5.6 340 82-435 8-375 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 4.7E-32 1E-36 255.6 -3.9 326 108-441 76-410 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 6.2E-32 1.4E-36 242.5 -8.1 336 83-435 70-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 6.7E-31 1.5E-35 235.8 -10.9 346 83-448 47-530 (565)
9 PLN03210 Resistant to P. syrin 99.9 2.1E-24 4.5E-29 234.1 26.5 330 102-446 550-893 (1153)
10 KOG0618 Serine/threonine phosp 99.9 1.9E-27 4.1E-32 233.9 -4.4 334 82-436 46-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.5E-23 7.5E-28 224.6 25.4 319 100-433 578-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 1.8E-26 4E-31 207.1 -4.4 369 66-447 52-489 (498)
13 PRK15387 E3 ubiquitin-protein 99.9 7.4E-23 1.6E-27 207.3 17.1 267 136-445 202-468 (788)
14 KOG0618 Serine/threonine phosp 99.9 1.7E-25 3.7E-30 220.3 -5.5 344 83-447 23-431 (1081)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 2.9E-26 198.1 17.0 265 110-418 201-465 (788)
16 KOG4237 Extracellular matrix p 99.8 6.3E-23 1.4E-27 184.5 -1.9 274 111-387 68-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.1E-20 8.8E-25 188.5 17.5 245 137-411 180-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.6E-21 1E-25 181.3 2.5 91 344-434 214-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.3E-24 185.5 12.2 290 110-438 178-473 (754)
20 cd00116 LRR_RI Leucine-rich re 99.8 8.7E-21 1.9E-25 179.4 2.4 86 231-316 137-234 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-19 4.4E-24 144.2 -5.9 156 107-268 30-186 (264)
22 KOG0617 Ras suppressor protein 99.7 7.2E-19 1.6E-23 141.1 -4.6 165 131-301 29-194 (264)
23 PLN03150 hypothetical protein; 99.5 8.1E-14 1.8E-18 141.9 14.4 153 23-194 367-526 (623)
24 KOG1909 Ran GTPase-activating 99.3 3.7E-13 8.1E-18 120.3 0.9 230 82-316 31-311 (382)
25 KOG1909 Ran GTPase-activating 99.3 3.7E-13 8E-18 120.4 -0.4 89 231-319 157-257 (382)
26 COG4886 Leucine-rich repeat (L 99.3 1E-11 2.3E-16 120.9 9.3 197 139-344 97-294 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.4E-11 3E-16 120.0 9.6 201 162-371 96-297 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 2.7E-13 5.9E-18 128.3 -3.8 158 102-268 90-247 (722)
29 KOG0532 Leucine-rich repeat (L 99.2 6.1E-13 1.3E-17 126.0 -3.9 195 230-433 74-271 (722)
30 KOG1259 Nischarin, modulator o 99.2 4.1E-12 8.9E-17 111.4 0.9 133 227-365 280-413 (490)
31 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.7E-16 113.7 2.6 206 228-435 118-339 (505)
32 KOG3207 Beta-tubulin folding c 99.1 4.9E-12 1.1E-16 116.3 -1.1 207 109-316 120-339 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 9.8E-11 2.1E-15 98.3 5.4 126 108-239 17-148 (175)
34 KOG1259 Nischarin, modulator o 99.1 2E-11 4.2E-16 107.2 1.1 86 347-435 325-412 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.1 6.5E-11 1.4E-15 123.5 5.0 325 109-441 522-866 (889)
36 PLN03150 hypothetical protein; 99.1 3.8E-10 8.2E-15 115.3 9.4 112 328-439 419-532 (623)
37 KOG4658 Apoptotic ATPase [Sign 99.1 8.6E-11 1.9E-15 122.6 4.0 253 108-366 543-809 (889)
38 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 97.6 3.7 108 131-243 15-125 (175)
39 KOG0531 Protein phosphatase 1, 98.9 1.4E-10 3.1E-15 113.1 -0.8 224 180-413 92-320 (414)
40 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.8E-15 113.5 -2.0 247 107-368 69-322 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 5.1E-14 73.9 2.8 59 111-170 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 4.5E-09 9.7E-14 72.5 3.1 61 135-195 1-61 (61)
43 PF08263 LRRNT_2: Leucine rich 98.6 8.9E-08 1.9E-12 60.4 3.9 41 26-75 1-43 (43)
44 COG5238 RNA1 Ran GTPase-activa 98.5 2E-08 4.2E-13 87.5 0.3 181 82-268 31-255 (388)
45 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.8E-14 95.9 -7.1 156 111-266 186-349 (419)
46 KOG2120 SCF ubiquitin ligase, 98.5 7.4E-09 1.6E-13 91.2 -3.3 178 160-337 186-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 9.7E-09 2.1E-13 100.6 -4.1 198 181-387 82-292 (1096)
48 KOG2982 Uncharacterized conser 98.4 3.2E-08 7E-13 87.2 -0.8 211 107-317 42-263 (418)
49 KOG1859 Leucine-rich repeat pr 98.4 6E-09 1.3E-13 102.1 -6.1 196 109-315 83-291 (1096)
50 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.6E-12 83.7 1.5 201 230-430 70-287 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.3 4.1E-07 8.9E-12 79.4 2.4 213 105-317 25-286 (388)
52 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.1E-11 54.4 3.2 37 398-435 1-37 (44)
53 KOG4579 Leucine-rich repeat (L 98.0 3.8E-07 8.2E-12 71.4 -2.3 34 330-364 80-113 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 50.5 3.4 36 136-172 2-37 (44)
55 KOG4579 Leucine-rich repeat (L 97.9 1E-06 2.2E-11 69.0 -2.4 86 108-196 51-136 (177)
56 PRK15386 type III secretion pr 97.9 5.6E-05 1.2E-09 71.7 8.5 137 227-384 48-187 (426)
57 KOG1644 U2-associated snRNP A' 97.9 3.2E-05 7E-10 64.9 6.1 103 136-240 43-149 (233)
58 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.2E-10 83.0 3.3 106 135-242 122-231 (699)
59 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 70.0 8.8 138 274-432 47-187 (426)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00012 2.6E-09 58.8 6.9 84 129-215 6-89 (129)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00012 2.6E-09 58.8 6.1 123 104-233 6-128 (129)
62 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.7E-10 80.7 2.0 83 109-193 147-230 (699)
63 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.3E-09 60.3 5.9 83 160-244 43-126 (233)
64 KOG4341 F-box protein containi 97.4 6E-06 1.3E-10 76.5 -4.9 296 111-428 139-458 (483)
65 KOG4341 F-box protein containi 97.2 1.6E-05 3.5E-10 73.8 -4.4 254 180-433 161-437 (483)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00042 9.1E-09 60.8 2.0 102 328-431 44-152 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00052 1.1E-08 60.2 2.2 41 131-171 61-103 (260)
68 PF00560 LRR_1: Leucine Rich R 96.8 0.00048 1E-08 36.1 0.9 22 423-445 1-22 (22)
69 KOG1947 Leucine rich repeat pr 96.8 0.00021 4.6E-09 71.5 -0.9 62 181-242 241-306 (482)
70 KOG1947 Leucine rich repeat pr 96.6 0.00033 7.1E-09 70.2 -1.7 62 230-291 242-307 (482)
71 KOG2123 Uncharacterized conser 96.5 0.00021 4.5E-09 63.1 -3.2 80 183-266 19-99 (388)
72 KOG2123 Uncharacterized conser 96.4 0.00029 6.2E-09 62.3 -2.9 98 328-428 20-123 (388)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0063 1.4E-07 31.8 0.9 19 400-419 2-20 (22)
74 KOG4308 LRR-containing protein 94.8 0.00023 5.1E-09 70.0 -10.7 85 328-412 205-304 (478)
75 PF13504 LRR_7: Leucine rich r 94.7 0.018 3.9E-07 27.9 1.1 13 423-435 2-14 (17)
76 KOG4308 LRR-containing protein 93.9 0.0003 6.5E-09 69.2 -12.0 182 160-341 88-304 (478)
77 KOG0473 Leucine-rich repeat pr 92.2 0.0018 3.9E-08 55.9 -8.1 93 125-220 32-124 (326)
78 smart00369 LRR_TYP Leucine-ric 91.5 0.18 4E-06 27.4 2.1 20 421-441 1-20 (26)
79 smart00370 LRR Leucine-rich re 91.5 0.18 4E-06 27.4 2.1 20 421-441 1-20 (26)
80 PF13516 LRR_6: Leucine Rich r 91.4 0.068 1.5E-06 28.5 0.3 17 422-438 2-18 (24)
81 KOG3864 Uncharacterized conser 90.5 0.048 1E-06 46.3 -1.3 81 280-360 102-185 (221)
82 KOG0473 Leucine-rich repeat pr 90.0 0.0091 2E-07 51.6 -5.9 85 349-435 40-124 (326)
83 smart00370 LRR Leucine-rich re 90.0 0.33 7.1E-06 26.3 2.3 19 110-129 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 90.0 0.33 7.1E-06 26.3 2.3 19 110-129 2-20 (26)
85 KOG3864 Uncharacterized conser 89.1 0.093 2E-06 44.6 -0.6 35 82-121 102-136 (221)
86 smart00364 LRR_BAC Leucine-ric 85.8 0.51 1.1E-05 25.6 1.3 18 422-440 2-19 (26)
87 KOG4242 Predicted myosin-I-bin 75.5 15 0.00032 35.9 7.9 106 328-433 355-479 (553)
88 KOG4242 Predicted myosin-I-bin 71.6 23 0.0005 34.7 8.2 19 135-153 165-183 (553)
89 smart00365 LRR_SD22 Leucine-ri 68.7 4.5 9.8E-05 22.0 1.8 15 421-435 1-15 (26)
90 smart00368 LRR_RI Leucine rich 68.5 4.2 9E-05 22.5 1.7 14 422-435 2-15 (28)
91 KOG3763 mRNA export factor TAP 51.4 12 0.00025 37.4 2.4 13 328-340 271-283 (585)
92 KOG3763 mRNA export factor TAP 49.7 12 0.00025 37.3 2.2 40 349-389 242-285 (585)
93 smart00367 LRR_CC Leucine-rich 46.7 13 0.00029 19.9 1.3 12 398-409 2-13 (26)
94 PF07172 GRP: Glycine rich pro 41.5 19 0.00042 26.9 1.8 17 5-21 6-22 (95)
95 PF00879 Defensin_propep: Defe 36.0 49 0.0011 21.5 2.7 23 1-23 1-23 (52)
96 PF10731 Anophelin: Thrombin i 28.7 48 0.001 22.0 1.8 23 1-23 1-23 (65)
97 PF05984 Cytomega_UL20A: Cytom 26.4 76 0.0016 22.7 2.6 22 1-22 1-22 (100)
98 PF08194 DIM: DIM protein; In 24.4 1E+02 0.0022 18.3 2.5 14 1-14 1-14 (36)
99 PF02950 Conotoxin: Conotoxin; 23.1 39 0.00084 23.7 0.8 7 63-69 61-67 (75)
100 TIGR00864 PCC polycystin catio 20.1 69 0.0015 38.9 2.3 32 116-148 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-50 Score=435.87 Aligned_cols=401 Identities=36% Similarity=0.543 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchh
Q 038011 26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKL 105 (448)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~ 105 (448)
.++|+.||++||+.+. ++.+ ...+|....+||.|.|++|...+ +|+.+++++ +.+.+..+..
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~---------~~~~w~~~~~~c~w~gv~c~~~~---~v~~L~L~~-----~~i~~~~~~~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLK---------YLSNWNSSADVCLWQGITCNNSS---RVVSIDLSG-----KNISGKISSA 88 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcc---------cCCCCCCCCCCCcCcceecCCCC---cEEEEEecC-----CCccccCChH
Confidence 5578999999999986 6654 57899888899999999998644 899999999 8888888999
Q ss_pred hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL 185 (448)
Q Consensus 106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 185 (448)
+..+++|+.|++++|.+.+.+|...+.++++|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..++++++|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 999999999999999998888866666888888888888887765554 345667777777766666666666666666
Q ss_pred CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 345 (448)
.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.....+....+|++|++++|.+.+..|.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 66655666666666666666666666555555555566666666666655543333333344555555555555555555
Q ss_pred hhhcCCCCCEEeCCCCccccccCcc------------------------cCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011 346 WLSNQTELAFLDLSENELEGTYPQW------------------------LAE-PNLGTVILSDNMLTGSLPPRLFESRNL 400 (448)
Q Consensus 346 ~~~~~~~L~~L~ls~n~~~~~~~~~------------------------~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 400 (448)
.+..+++|+.|++++|.+.+.+|.. +.. .+|+.|++++|++.+.+|..+..+++|
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 5555555555555555554444443 332 224555555555554555555555555
Q ss_pred CEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011 401 SVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446 (448)
Q Consensus 401 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~ 446 (448)
+.|++++|++++.+|..+..++.|+.|++++|+++|.+|..+..++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 5555555555555555555555555555555555555555444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-43 Score=377.20 Aligned_cols=361 Identities=30% Similarity=0.465 Sum_probs=211.3
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
.+++.+++++ +.+.+..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++
T Consensus 164 ~~L~~L~L~~-----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 164 SSLKVLDLGG-----NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCEEECcc-----CcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 4677777777 66666677777777777777777777766666 56666777777777777766666666666677
Q ss_pred CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240 (448)
Q Consensus 161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 240 (448)
|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 77777776666666666666666666666666666656666666666666666666666555555555555666666655
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc------------------------cccc
Q 038011 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA------------------------GEIP 296 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~------------------------~~~~ 296 (448)
|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++ +.+|
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 5555555555555555555555555555444544444444555554444444 3444
Q ss_pred hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc-
Q 038011 297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN- 375 (448)
Q Consensus 297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~- 375 (448)
..+..+++|+.|++++|.+.+.....+.....|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+...+
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L 477 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence 4444455555555555555543333344444555555555555555555444555555555555555444444333333
Q ss_pred -----------------------ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCC
Q 038011 376 -----------------------LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN 432 (448)
Q Consensus 376 -----------------------L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 432 (448)
|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 445555555555555555555555555555555555555555555556666666666
Q ss_pred cccccCchhhhcCCC
Q 038011 433 NFSGHVPKSISNLTL 447 (448)
Q Consensus 433 ~i~~~~p~~~~~l~~ 447 (448)
+++|.+|..+.++++
T Consensus 558 ~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 558 QLSGEIPKNLGNVES 572 (968)
T ss_pred cccccCChhHhcCcc
Confidence 666556655555443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-37 Score=286.51 Aligned_cols=358 Identities=23% Similarity=0.236 Sum_probs=290.2
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
..+..+|++. +.+....+..|.++++|+.+++..|.++ .|| .......+|+.|+|.+|.|+..-.+.+..++.
T Consensus 78 ~~t~~Ldlsn-----Nkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 78 SQTQTLDLSN-----NKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred cceeeeeccc-----cccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeeccccccccHHHHHhHhh
Confidence 4567788887 7777777888889999999999999988 888 44444556999999999888777778888888
Q ss_pred CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240 (448)
Q Consensus 161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 240 (448)
|+.|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|++..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999999888766556676667889999999998877777888888888999999998876667778889999999988
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 320 (448)
|.+.-...-.|.++++|+.|.+..|++.......|..+.++++|++..|++...-..++..++.|+.|++++|.+..+..
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 88874445677888888888888888876666778888888888998888887667788888889999999998888877
Q ss_pred cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCC---hhhcC
Q 038011 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLP---PRLFE 396 (448)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~---~~~~~ 396 (448)
..+.-.++|++|+|++|+++...++.|..+..|++|++++|.+...-...|... +|++|||++|.+...+- ..+..
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 777777788999999998888888888888889999999988876555555544 48899999988875443 35666
Q ss_pred CCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011 397 SRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445 (448)
Q Consensus 397 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l 445 (448)
+++|+.|++.+|++.......|..++.|+.|||.+|.|-..=|..|..+
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 8888999999999886666778888999999999998886556667655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-36 Score=280.21 Aligned_cols=333 Identities=26% Similarity=0.232 Sum_probs=295.1
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 190 (448)
.-+.|++++|.+. .+....|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+.+..+.+..++.|+.|+|
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 5678999999999 777688999999999999999998 78887777788999999999999888889999999999999
Q ss_pred cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
+.|.|+...-..|..-.++++|+|++|+++..-...|..+.+|..|.++.|.++...+..|..+++|+.|++..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999855555677778999999999999987778899999999999999999977777888899999999999999844
Q ss_pred chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011 271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350 (448)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 350 (448)
--..|..+++|+.|.+..|.+...-...|..+.++++|+|..|++..+....+..+..|+.|++++|.|...-+..+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45689999999999999999987777788899999999999999999888888889999999999999999889999999
Q ss_pred CCCCEEeCCCCccccccCcccCCCc-ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcc---cccCCCCCCE
Q 038011 351 TELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPE---TMGQSTSVMV 426 (448)
Q Consensus 351 ~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 426 (448)
++|++|++++|+|+...+..+...+ |++|+|++|.++..--..|..+++|+.|||++|.++..+-+ .|..+++|++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 9999999999999977777776655 99999999999854455777889999999999998865543 4677999999
Q ss_pred EeCcCCcccccCch-hhhcCC
Q 038011 427 LMLSSNNFSGHVPK-SISNLT 446 (448)
Q Consensus 427 L~l~~n~i~~~~p~-~~~~l~ 446 (448)
|++.+|++. +||. .|..+.
T Consensus 397 L~l~gNqlk-~I~krAfsgl~ 416 (873)
T KOG4194|consen 397 LRLTGNQLK-SIPKRAFSGLE 416 (873)
T ss_pred eeecCceee-ecchhhhccCc
Confidence 999999999 7875 355444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.6e-34 Score=268.04 Aligned_cols=340 Identities=25% Similarity=0.319 Sum_probs=206.5
Q ss_pred eEEEEeCCCCCCCCCCcc-cccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVT-SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
-|+.+|+++ +.++ +.+|..+..+++++.|.|...++. .+| +.++.+.+|++|.+++|++. .+...+..++.
T Consensus 8 FVrGvDfsg-----NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 8 FVRGVDFSG-----NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLI-SVHGELSDLPR 79 (1255)
T ss_pred eeecccccC-----CcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhH-hhhhhhccchh
Confidence 455666665 5554 344555555555555555555554 455 44555555555555555544 23333444444
Q ss_pred CCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccc-----------------
Q 038011 161 LEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG----------------- 222 (448)
Q Consensus 161 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~----------------- 222 (448)
|+.+++..|.+.. -+|..+..+..|.+|++++|++. ..|..+.+-+++..|+|++|+|..+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 5555554444421 23344444444555555555444 4444444444444444444444432
Q ss_pred ------cchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc-ccchhhhhCCCCCcEEeccCCcccccc
Q 038011 223 ------IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT-GAIPQSIRDMTKLVTLRLDSNVLAGEI 295 (448)
Q Consensus 223 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (448)
+|..+.++..|++|++++|.+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 3334444445555555555443221122233445555555554332 245666677777888888888877 67
Q ss_pred chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc-cCcccCC-
Q 038011 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT-YPQWLAE- 373 (448)
Q Consensus 296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~- 373 (448)
|+.+..+++|+.|+|++|+++.... ......+|+.|+++.|+++ .+|.++..++.|+.|...+|+++-. +|.-+..
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 8888888888888888888876443 2233447888888888887 6788888888888888888876532 3333333
Q ss_pred CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011 374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
..|+.+..++|.+. .+|..++.|..|+.|.|+.|++. ++|+.+.-++.|+.||+.+|.-.
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 34888888888887 78888888888888888888877 78888888888888888888544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.7e-32 Score=255.61 Aligned_cols=326 Identities=24% Similarity=0.312 Sum_probs=247.5
Q ss_pred CCCCCCEEECCCCCCCCC-CCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 108 RIRSLMTLDLSYNAMKGE-IPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
.++.|+.+.+.+|++... || ..+.++..|+.||||+|++. ..|..+..-+++-+|+|++|.|..+....|.++..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCC-chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 344444444444444322 44 45666777777777777777 6777777777777777777777654445567777888
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC-CCCCccccCCCCCCEEEcccC
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS-GEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n 265 (448)
.|++++|++. .+|..+.++..|++|.|++|.+...--..+..+++|++|++++.+-+ ..+|..+..+.+|..++++.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 8888888887 67777888899999999999886543344556788999999987643 367888999999999999999
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc-CCcc
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR-GPMP 344 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~ 344 (448)
.+. ..|..+..+++|+.|++++|+++. +.-......+|++|+++.|+++..+. .+..+..|+.|.+.+|+++ +.+|
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCc
Confidence 998 889999999999999999999984 44455667889999999999996554 4455668999999999876 4588
Q ss_pred hhhhcCCCCCEEeCCCCccccccCcccCCCc-ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCC
Q 038011 345 LWLSNQTELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTS 423 (448)
Q Consensus 345 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 423 (448)
.-++.+.+|+.+..++|.+. ..|+.++.+. |+.|.|+.|.+. ++|+.+.-++.|+.||+..|+-.-..|.--..-++
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~ 387 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKK 387 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhc
Confidence 89999999999999999997 6777776655 999999999998 89999999999999999999855344432222244
Q ss_pred CCEEeCcCC-----cccccCchh
Q 038011 424 VMVLMLSSN-----NFSGHVPKS 441 (448)
Q Consensus 424 L~~L~l~~n-----~i~~~~p~~ 441 (448)
|+.-++... ++-|..|.+
T Consensus 388 lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 388 LEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred ceeeecceehhhHHhhccCCccc
Confidence 544333321 355655543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=6.2e-32 Score=242.45 Aligned_cols=336 Identities=29% Similarity=0.407 Sum_probs=195.7
Q ss_pred EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011 83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162 (448)
Q Consensus 83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 162 (448)
.+.+++.+ +.+ ...|++++++..++.++.++|++. .+| ..+..+..|+.+++++|.+. .+|+.++.+..|+
T Consensus 70 l~vl~~~~-----n~l-~~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 70 LTVLNVHD-----NKL-SQLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred eeEEEecc-----chh-hhCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 44555554 332 345556666666666666666666 566 55666666666666666665 5555666666666
Q ss_pred EEEcccCCCCCccchhccCCCCCCEEEccCccCCC----------------------CCccccCCCCCCCeEecccCccc
Q 038011 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG----------------------QIPAEIGNLTNLHKLLLLQNEFS 220 (448)
Q Consensus 163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~l~~l~~L~~L~l~~n~~~ 220 (448)
.++..+|.++ ..|+.+.++.++..+++.+|++.. .+|..++.+.+|+.|++..|++.
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence 6666666554 344444444444444444444431 44555555555555555555554
Q ss_pred cccchhccCCCCCCEEEcccCcCCCCCCccc-cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhh
Q 038011 221 GGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWL 299 (448)
Q Consensus 221 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 299 (448)
..| .|..|..|++++++.|.+. .+|... .+++++..||+.+|+++ ..|+.+..+.+|++||+++|.++ ..|..+
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 233 4555555555665555554 333333 36777788888888877 67777777778888888888877 456666
Q ss_pred hCCCCCCEEEccCCcCCCCC--------------------------------------CcccCCC---------------
Q 038011 300 FDLHDMKSLFLGGNKLKWNN--------------------------------------NVSIVPK--------------- 326 (448)
Q Consensus 300 ~~~~~L~~L~L~~n~l~~~~--------------------------------------~~~~~~~--------------- 326 (448)
+++ .|+.|.+.||.+..+. ...++..
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 666 6777777666542111 0001100
Q ss_pred ------------c--cccEEEccCCcCcC-----------------------CcchhhhcCCCCCEEeCCCCccccccCc
Q 038011 327 ------------C--MLTELSLRSCSVRG-----------------------PMPLWLSNQTELAFLDLSENELEGTYPQ 369 (448)
Q Consensus 327 ------------~--~L~~L~l~~n~~~~-----------------------~~~~~~~~~~~L~~L~ls~n~~~~~~~~ 369 (448)
. -+..++++.|++.+ .+|..+..+++|..|++++|.+.+.+.+
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e 453 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE 453 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh
Confidence 0 13444555544431 2333445556666666666665532222
Q ss_pred ccCCCcccEEEccCCccc-----------------------ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCE
Q 038011 370 WLAEPNLGTVILSDNMLT-----------------------GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMV 426 (448)
Q Consensus 370 ~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 426 (448)
....-.|+.++++.|.|. ...+..+.++.+|++|||.+|.+. .+|..+++|.+|++
T Consensus 454 ~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 222233555665555544 223334667778888888888887 77778888888888
Q ss_pred EeCcCCccc
Q 038011 427 LMLSSNNFS 435 (448)
Q Consensus 427 L~l~~n~i~ 435 (448)
|++++|+|.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 888888887
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=6.7e-31 Score=235.84 Aligned_cols=346 Identities=27% Similarity=0.374 Sum_probs=242.2
Q ss_pred EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011 83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162 (448)
Q Consensus 83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 162 (448)
...+.++. +.+. .+.+.+.++..+.+|++++|++. ++| .+++.+..++.++.++|.+. .+|+.++.+.+|+
T Consensus 47 l~~lils~-----N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 47 LQKLILSH-----NDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred hhhhhhcc-----Cchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 45566665 5443 44566788999999999999998 888 78999999999999999998 8999999999999
Q ss_pred EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc
Q 038011 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242 (448)
Q Consensus 163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 242 (448)
.+++++|.+. ..|+.++.+-.++.++..+|++. ..|..+.++.++..+++.+|++....|..+. |+.|+++|...|.
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence 9999999997 67788899999999999999998 6787887777777777777776643333332 5566666655555
Q ss_pred CCCCCCccccCCCCCCEEEcccCcCcc---------------------cchhhh-hCCCCCcEEeccCCccccccchhhh
Q 038011 243 LSGEIPNDIGILANMTTLALSNNALTG---------------------AIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLF 300 (448)
Q Consensus 243 l~~~~~~~~~~~~~L~~L~l~~n~l~~---------------------~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~ 300 (448)
+. .+|..++.+.+|+.|++..|++.. .+|... .+++++..||+.+|+++ ..|+.+.
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 54 445555555555555555554431 233333 35667777777777776 5666677
Q ss_pred CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC--------------------------------------
Q 038011 301 DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP-------------------------------------- 342 (448)
Q Consensus 301 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-------------------------------------- 342 (448)
-+.+|.+||+++|.+++.+. .+..+ .|+.|-+.+|.+...
T Consensus 273 lLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 77777777777777765442 22222 556666666654310
Q ss_pred --------------------------cch-hhh--cCCCCCEEeCCCCccccccCc------------------------
Q 038011 343 --------------------------MPL-WLS--NQTELAFLDLSENELEGTYPQ------------------------ 369 (448)
Q Consensus 343 --------------------------~~~-~~~--~~~~L~~L~ls~n~~~~~~~~------------------------ 369 (448)
+|. .|. .-.-...++++.|++. ++|.
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 000 000 0011345566666554 2221
Q ss_pred cc-CCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcc------------------------cccCCCCC
Q 038011 370 WL-AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPE------------------------TMGQSTSV 424 (448)
Q Consensus 370 ~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------------~~~~l~~L 424 (448)
.+ ..++|+.|++++|.+. .+|..++.+..|+.||++.|+|. .+|+ .+..|.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 11 1245899999999998 79999999999999999999776 3333 25567899
Q ss_pred CEEeCcCCcccccCchhhhcCCCC
Q 038011 425 MVLMLSSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 425 ~~L~l~~n~i~~~~p~~~~~l~~l 448 (448)
..||+.+|.+. .||..+++|+.|
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred ceeccCCCchh-hCChhhccccce
Confidence 99999999999 899999999875
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.1e-24 Score=234.06 Aligned_cols=330 Identities=25% Similarity=0.285 Sum_probs=231.4
Q ss_pred cchhhcCCCCCCEEECCCCCC------CCCCCccccCCCC-CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc
Q 038011 102 VLKLIFRIRSLMTLDLSYNAM------KGEIPRTGFANLT-KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK 174 (448)
Q Consensus 102 ~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 174 (448)
.+.+|..+++|+.|.+..+.. ...+| ..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 445788899999999866532 22355 4455554 6999999998877 677766 4688999999998876 5
Q ss_pred cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCC
Q 038011 175 LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL 254 (448)
Q Consensus 175 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 254 (448)
++..+..+++|+.++++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 677778889999999988764446664 7788999999999887666788888899999999999876555667655 68
Q ss_pred CCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCC-------CCcccCCCc
Q 038011 255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWN-------NNVSIVPKC 327 (448)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~ 327 (448)
++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++..... ....+....
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 88999999988655444432 457889999998876 456544 567788887776432211 111111224
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcC
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 407 (448)
+|+.|++++|.....+|..++++++|+.|++++|...+.+|.....++|+.|++++|.....+|.. .++|+.|++++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 788888888877777788888888888888887754445665555555777777776544444432 25677777777
Q ss_pred CcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011 408 NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446 (448)
Q Consensus 408 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~ 446 (448)
|.++ .+|..+..+++|+.|++++|+--..+|..+..++
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 7776 5666677777777777777533335665555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-27 Score=233.93 Aligned_cols=334 Identities=31% Similarity=0.377 Sum_probs=224.1
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+...+|++. +..+..|..+..+.+|+.|+++.|.+. .+| ....++++|++++|.+|.+. ..|..+..+.+|
T Consensus 46 ~L~~l~lsn------n~~~~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 46 KLKSLDLSN------NQISSFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred eeEEeeccc------cccccCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 578888884 666778888999999999999999998 788 77888999999999999887 789999999999
Q ss_pred CEEEcccCCCCCccchhccCCCC-------------------CCEEEccCccCCCCCccccCCCCCCCeEecccCccccc
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKN-------------------LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG 222 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~-------------------L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 222 (448)
++|++++|.+. ..|..+..+.. ++.+++..|.+.+.++..+..+.. .|++.+|.+..
T Consensus 117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~- 192 (1081)
T KOG0618|consen 117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV- 192 (1081)
T ss_pred cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh-
Confidence 99999999875 44543333332 333333333333333333333333 35555554431
Q ss_pred cchhccCC--------------------CCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCc
Q 038011 223 IPLSLLQL--------------------RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282 (448)
Q Consensus 223 ~~~~l~~l--------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 282 (448)
..+..+ ++|+.|+.+.|.++...+ ..-..+|++++++.|+++ .+|.++..+.+|+
T Consensus 193 --~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 193 --LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred --hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccce
Confidence 001111 223333333333331111 112234555555555555 3345555555555
Q ss_pred EEeccCCcccc----------------------ccchhhhCCCCCCEEEccCCcCCCCCCcccCC---------------
Q 038011 283 TLRLDSNVLAG----------------------EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP--------------- 325 (448)
Q Consensus 283 ~L~l~~n~l~~----------------------~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~--------------- 325 (448)
.+...+|.++. .+|........|++|+|..|++...+...+..
T Consensus 268 ~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 55555555431 34555556778888999888887665322111
Q ss_pred ----------CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhh
Q 038011 326 ----------KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL 394 (448)
Q Consensus 326 ----------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 394 (448)
...|+.|++.+|.+++.....+.++++|+.|++++|++.......+.. ..|++|+|+||+++ .+|..+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 116888889999998877778889999999999999998433333333 33999999999999 788888
Q ss_pred cCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
.+++.|++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 88888888888888888 677 67788888888888888773
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.5e-23 Score=224.58 Aligned_cols=319 Identities=21% Similarity=0.217 Sum_probs=247.3
Q ss_pred cccchhhcCCC-CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011 100 SDVLKLIFRIR-SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS 178 (448)
Q Consensus 100 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 178 (448)
..+|..+..++ +|+.|++.++.+. .+| ..+ ...+|++|+++++.+. .++..+..+++|++++++++.....+| .
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP-~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ 652 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMP-SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-D 652 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCC-CCC-CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-c
Confidence 34566666654 6999999999887 788 445 5789999999999987 678888899999999999886555565 4
Q ss_pred ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC
Q 038011 179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT 258 (448)
Q Consensus 179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 258 (448)
+..+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|......|.. ..+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 7889999999999987666889999999999999999986555677655 6899999999998765555542 46899
Q ss_pred EEEcccCcCcccchhhhhCCCCCcEEeccCCccc-------cccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccE
Q 038011 259 TLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA-------GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTE 331 (448)
Q Consensus 259 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 331 (448)
+|++++|.+. .+|..+ .+++|++|.+.++... ...+......++|+.|++++|.....-+..+..+.+|+.
T Consensus 729 ~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 729 WLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 9999999887 455544 5678888888764321 111222334578999999998655433335666778999
Q ss_pred EEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccc
Q 038011 332 LSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411 (448)
Q Consensus 332 L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 411 (448)
|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..++++|++++|.++ .+|..+..+++|+.|++++|+-.
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 9999987666677655 7899999999998655455543 245999999999998 78999999999999999997644
Q ss_pred ccCcccccCCCCCCEEeCcCCc
Q 038011 412 GELPETMGQSTSVMVLMLSSNN 433 (448)
Q Consensus 412 ~~~~~~~~~l~~L~~L~l~~n~ 433 (448)
..+|..+..+++|+.+++++|.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccCcccccccCCCeeecCCCc
Confidence 4688888889999999999884
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-26 Score=207.06 Aligned_cols=369 Identities=21% Similarity=0.239 Sum_probs=199.7
Q ss_pred CccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCC-
Q 038011 66 CCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNN- 144 (448)
Q Consensus 66 ~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~- 144 (448)
.|+-.|.+-.+.+.+...+.++|.. +.++...+.+|..+++||.|||++|.|+ .|..++|.++++|..|-+.+
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdq-----N~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQ-----NQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EccCCCcccCcccCCCcceEEEecc-----CCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 3444555555556666777777777 7777777777777777777777777777 55557777777777765555
Q ss_pred CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc---
Q 038011 145 NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG--- 221 (448)
Q Consensus 145 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--- 221 (448)
|.|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 77775555567777777777777777766666677777777777777777763322366677777777776665211
Q ss_pred ---------ccchhccCCCCCCEEEcccCcCCCCCCccccCC-CCCCEEEcccCcCccc-chhhhhCCCCCcEEeccCCc
Q 038011 222 ---------GIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL-ANMTTLALSNNALTGA-IPQSIRDMTKLVTLRLDSNV 290 (448)
Q Consensus 222 ---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~ 290 (448)
..|..++.........+...++..+-+..+... +.+..-..+.+...+. ....|..+++|+.|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 011111111111111111111111111111100 0110000111111112 12345555666666666666
Q ss_pred cccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc---
Q 038011 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY--- 367 (448)
Q Consensus 291 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--- 367 (448)
+++.-+.+|.....+++|.|..|++..+....|.....|+.|+|.+|+|+...|.+|.....|..|++-.|.+...-
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 65555555555556666666666655555555555555666666666665555555555555666655554442100
Q ss_pred --Cccc-----------CCCc-ccEEEccCCcccc------------------------------------cCChhhcCC
Q 038011 368 --PQWL-----------AEPN-LGTVILSDNMLTG------------------------------------SLPPRLFES 397 (448)
Q Consensus 368 --~~~~-----------~~~~-L~~L~L~~n~l~~------------------------------------~~~~~~~~~ 397 (448)
-+|+ ..|. ++.+.+++..+.+ .+|..+ .
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P 443 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--P 443 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--C
Confidence 0000 0111 4455554443321 122111 0
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCc-hhhhcCCC
Q 038011 398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP-KSISNLTL 447 (448)
Q Consensus 398 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p-~~~~~l~~ 447 (448)
..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++ .+. -.|.+++.
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~-~Lsn~tf~n~tq 489 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS-SLSNYTFSNMTQ 489 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee-hhhcccccchhh
Confidence 12356788888888 66665 55677 7888888888 443 34666654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=7.4e-23 Score=207.26 Aligned_cols=267 Identities=24% Similarity=0.325 Sum_probs=154.9
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 215 (448)
.-..|+++++.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4555666666665 4555544 356666666666652 332 2356666666666666 33432 2456666666
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (448)
+|.+.. +|.. .++|+.|++++|.++ .+|. ..++|+.|++++|.+++ +|.. ...|+.|++++|.+++ +
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 666653 3321 245666666666665 3333 23556666676666663 2321 2346666666666653 3
Q ss_pred chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN 375 (448)
Q Consensus 296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 375 (448)
|.. ..+|+.|++++|++...+. + ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+++ +|.. ..+
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~--l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~ 403 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPT--L--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--PSE 403 (788)
T ss_pred ccc---ccccceEecCCCccCCCCC--C--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc--ccC
Confidence 431 2356677777777665432 1 1256667777776663 3432 2467777777777763 3332 234
Q ss_pred ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445 (448)
Q Consensus 376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l 445 (448)
|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+..+++|+.|+|++|+++|..|..+.++
T Consensus 404 L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 404 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 777777777776 455432 45667777777777 667777777777777777777777766666443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-25 Score=220.30 Aligned_cols=344 Identities=28% Similarity=0.357 Sum_probs=236.6
Q ss_pred EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011 83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162 (448)
Q Consensus 83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 162 (448)
++.+++.. +.+....-+.+.+.-+|+.|++++|.+. ..| ..+..+.+|+.|+++.|.+. ..|....++.+|+
T Consensus 23 ~~~ln~~~-----N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 23 LQILNLRR-----NSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQ 94 (1081)
T ss_pred HHhhhccc-----cccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcch
Confidence 55556655 4333333334444445888999988887 777 66888888999999988887 6777888888899
Q ss_pred EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe-------------------EecccCcccccc
Q 038011 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK-------------------LLLLQNEFSGGI 223 (448)
Q Consensus 163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~-------------------L~l~~n~~~~~~ 223 (448)
++.|..|++. ..|..+..+.+|+.|+++.|++. .+|..+..+..+.. +++..|.+.+.+
T Consensus 95 ~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 95 YLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence 9999888875 77888888889999999988877 55555544444444 444444444444
Q ss_pred chhccCCCCCCEEEcccCcCCCCCCccccCC--------------------CCCCEEEcccCcCcccchhhhhCCCCCcE
Q 038011 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGIL--------------------ANMTTLALSNNALTGAIPQSIRDMTKLVT 283 (448)
Q Consensus 224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 283 (448)
+..+..++. .+++..|.+... .+..+ ++++.|+.++|.++...+. ....+|++
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~ 245 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQY 245 (1081)
T ss_pred hcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--ccccccee
Confidence 444433333 477777766511 12222 3455555555555422111 22357999
Q ss_pred EeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcc
Q 038011 284 LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL 363 (448)
Q Consensus 284 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~ 363 (448)
++++.|+++ .+|+++..+.+|+.++..+|.+...+. .+....+|+.|.+.+|.+.. +|......+.|+.|++..|.+
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLVALPL-RISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccc
Confidence 999999998 567999999999999999999965443 23334467777777777663 444566677777777777766
Q ss_pred ccccCcc-----------------------cC---CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc
Q 038011 364 EGTYPQW-----------------------LA---EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET 417 (448)
Q Consensus 364 ~~~~~~~-----------------------~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 417 (448)
....+.. +. .+.|+.|.+.+|.+++...+.+.+.++|+.|+|++|++.......
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 5322211 11 122888999999999887778888899999999999998444456
Q ss_pred ccCCCCCCEEeCcCCcccccCchhhhcCCC
Q 038011 418 MGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447 (448)
Q Consensus 418 ~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~ 447 (448)
+.++..|++|+||+|.++ .+|+++.++..
T Consensus 403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred HhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 788899999999999999 89988877654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=198.14 Aligned_cols=265 Identities=25% Similarity=0.347 Sum_probs=210.8
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
..-..|+++++.++ .+| ..+. ++|+.|++++|.++ .+|. ..++|++|++++|+++. +|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP-~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCC-cchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceee
Confidence 45778999999998 888 4454 48999999999998 4664 25789999999999984 4542 46899999
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
+++|.++ .+|..+ ++|+.|++++|+++. +|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.+++
T Consensus 269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchh-hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 9999987 455533 578899999999984 454 24789999999999984 4432 3468899999999984
Q ss_pred cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349 (448)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 349 (448)
+|.. ..+|++|++++|++++ +|.. .++|+.|++++|.+..++. + ..+|+.|++++|.+++ +|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~--l--~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA--L--PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred -cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc--c--ccccceEEecCCcccC-CCCc---
Confidence 4432 2479999999999984 5543 4678899999999986543 1 2379999999999985 4432
Q ss_pred CCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccc
Q 038011 350 QTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETM 418 (448)
Q Consensus 350 ~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 418 (448)
.++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 401 ~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3689999999999985 5543 235899999999999 899999999999999999999999877766
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-23 Score=184.50 Aligned_cols=274 Identities=23% Similarity=0.242 Sum_probs=217.8
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEccc-CCCCCccchhccCCCCCCEEE
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST-NAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~ 189 (448)
....++|..|+|+ .||..+|+.+++|+.|||++|.|+.+.|++|..+++|..|-+.+ |+|+......|+++..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5678899999999 99999999999999999999999999999999999987776655 899877667899999999999
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC------------CCCccccCCCCC
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG------------EIPNDIGILANM 257 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~L 257 (448)
+..|++.-...+.|..++++..|.+.+|.+...--..|..+..++.+++..|.+.. ..|..+++..-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999998888899999999999999999885433478888999999988877321 122233334334
Q ss_pred CEEEcccCcCcccchhhhhCCCCCcEE--ec-cCCccccccc-hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEE
Q 038011 258 TTLALSNNALTGAIPQSIRDMTKLVTL--RL-DSNVLAGEIP-TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS 333 (448)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L--~l-~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 333 (448)
.-..+.+.++....+..|... ++.+ .+ +.+...+..| ..|..+++|++|++++|+++.+....|.....+++|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 444444444443444444322 2222 11 2222333333 4688899999999999999999999999999999999
Q ss_pred ccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc-ccEEEccCCccc
Q 038011 334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLT 387 (448)
Q Consensus 334 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~ 387 (448)
|..|++...-...|..+..|+.|++.+|+|+...|..|.... |.+|++-.|.+.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999877778899999999999999999988888887755 999999988765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=4.1e-20 Score=188.55 Aligned_cols=245 Identities=26% Similarity=0.372 Sum_probs=115.0
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011 137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216 (448)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 216 (448)
...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 344444444444 2333332 24445555555444 2233222 24555555555444 3333332 2455555555
Q ss_pred CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccc
Q 038011 217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP 296 (448)
Q Consensus 217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 296 (448)
|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 5544 2333332 24555555555554 2333321 345555555555542 222221 245555555555552 33
Q ss_pred hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcc
Q 038011 297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNL 376 (448)
Q Consensus 297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L 376 (448)
..+ .++|+.|++++|.++.++. .++ .+|+.|++++|++.. +|..+ .++|+.|++++|.++. +|..+. ..|
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~LP~-~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~-~sL 390 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTSLPA-SLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP-AAL 390 (754)
T ss_pred ccc--cccceeccccCCccccCCh-hhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH-HHH
Confidence 222 2455556666665554332 111 256666666666552 34333 2466666666666653 333221 236
Q ss_pred cEEEccCCcccccCChhh----cCCCCCCEEECcCCccc
Q 038011 377 GTVILSDNMLTGSLPPRL----FESRNLSVLVLSRNNFS 411 (448)
Q Consensus 377 ~~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~ 411 (448)
+.|++++|++. .+|..+ ..++++..|++.+|++.
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 66666666665 444333 22355666666666665
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=4.6e-21 Score=181.30 Aligned_cols=91 Identities=29% Similarity=0.308 Sum_probs=60.3
Q ss_pred chhhhcCCCCCEEeCCCCccccccCccc----C--CCcccEEEccCCcccc----cCChhhcCCCCCCEEECcCCccccc
Q 038011 344 PLWLSNQTELAFLDLSENELEGTYPQWL----A--EPNLGTVILSDNMLTG----SLPPRLFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 344 ~~~~~~~~~L~~L~ls~n~~~~~~~~~~----~--~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~ 413 (448)
...+..+++|++|++++|.+++.....+ . ...|++|++++|.+++ .+...+..+++|+++++++|.+...
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3445667778888888887765222211 1 2458888888888762 2344556668899999999988854
Q ss_pred ----CcccccCC-CCCCEEeCcCCcc
Q 038011 414 ----LPETMGQS-TSVMVLMLSSNNF 434 (448)
Q Consensus 414 ----~~~~~~~l-~~L~~L~l~~n~i 434 (448)
+...+... +.|+++++.+|++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCCC
Confidence 33344444 6888888888764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.1e-19 Score=185.48 Aligned_cols=290 Identities=23% Similarity=0.369 Sum_probs=207.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
.+.+.|+++++.++ .+| ..+ .++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIP-ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCC-ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 46789999999988 777 333 258999999999998 5676554 58999999999987 4565543 4799999
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
+++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.++.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc
Confidence 9999998 6777664 58999999999998 4666553 589999999999884 45443 2578999999999984
Q ss_pred cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349 (448)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 349 (448)
+|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|++...+. .++ .+|++|++++|+++. +|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~-LP~~l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTN-LPENLP- 387 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCC-CCHhHH-
Confidence 44433 3689999999999985 66655 3789999999999886543 232 479999999999985 455443
Q ss_pred CCCCCEEeCCCCccccccCccc----C-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc-cCcccccCCCC
Q 038011 350 QTELAFLDLSENELEGTYPQWL----A-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG-ELPETMGQSTS 423 (448)
Q Consensus 350 ~~~L~~L~ls~n~~~~~~~~~~----~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~ 423 (448)
..|+.|++++|+++ .+|..+ . .+.+..+++.+|++.. ..+.+|+.| ++.+.+.| .++..++.+.+
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~ 458 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSI 458 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCccccccccccc
Confidence 36999999999998 444322 2 2558899999999872 233445555 33444433 34444445555
Q ss_pred CCEEeCcCCcccccC
Q 038011 424 VMVLMLSSNNFSGHV 438 (448)
Q Consensus 424 L~~L~l~~n~i~~~~ 438 (448)
++....-.+-+.+.+
T Consensus 459 l~~~~~l~~a~~~Wl 473 (754)
T PRK15370 459 VRVTRPLHQAVQGWL 473 (754)
T ss_pred ccccchHHHHHhccC
Confidence 554333333344333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=8.7e-21 Score=179.40 Aligned_cols=86 Identities=30% Similarity=0.428 Sum_probs=36.8
Q ss_pred CCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccCCcccccc----chh
Q 038011 231 RELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDSNVLAGEI----PTW 298 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~ 298 (448)
++|+.|++++|.+++. +...+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.. ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4455555555544421 112223334455555555544421 1222333345555555555544221 222
Q ss_pred hhCCCCCCEEEccCCcCC
Q 038011 299 LFDLHDMKSLFLGGNKLK 316 (448)
Q Consensus 299 l~~~~~L~~L~L~~n~l~ 316 (448)
+..+++|++|++++|.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 334445555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=2e-19 Score=144.21 Aligned_cols=156 Identities=31% Similarity=0.502 Sum_probs=87.7
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
..+..++.|.+++|.++ .+| ..+..+.+|+.|++++|++. .+|..++.++.|++|+++-|++. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 34445555666666665 444 34556666666666666665 45556666666666666666554 5555666666666
Q ss_pred EEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 187 QLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 187 ~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
+|++..|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 66666555432 34555555555555555555555 44555555555555555555544 44555555555555555555
Q ss_pred cCc
Q 038011 266 ALT 268 (448)
Q Consensus 266 ~l~ 268 (448)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.2e-19 Score=141.05 Aligned_cols=165 Identities=30% Similarity=0.520 Sum_probs=132.4
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCC
Q 038011 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLH 210 (448)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 210 (448)
+..+.+++.|.+++|.++ ..|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 455677888888888888 67778888888888888888886 67888888888888888888887 7888888888888
Q ss_pred eEecccCcccc-ccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCC
Q 038011 211 KLLLLQNEFSG-GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289 (448)
Q Consensus 211 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 289 (448)
.|++.+|.+.. .+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 88888887764 56777777888888888888886 77778888888888888888876 67788888888888888888
Q ss_pred ccccccchhhhC
Q 038011 290 VLAGEIPTWLFD 301 (448)
Q Consensus 290 ~l~~~~~~~l~~ 301 (448)
.++ .+|..+++
T Consensus 184 rl~-vlppel~~ 194 (264)
T KOG0617|consen 184 RLT-VLPPELAN 194 (264)
T ss_pred eee-ecChhhhh
Confidence 887 45554443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=8.1e-14 Score=141.94 Aligned_cols=153 Identities=27% Similarity=0.418 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCc----cceeEEeCCC--CCcceEEEEeCCCCCCCCC
Q 038011 23 LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCC----HWEMVRCFSR--GSSKEVTGLDLSNLFPLDS 96 (448)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c----~w~~v~c~~~--~~~~~v~~l~l~~~~~~~~ 96 (448)
..+.++|.+||+.+|+.+. ++. ..+|.. ..|+ .|.|+.|... .....|+.++|++ +
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~-----------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL-----------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----Q 428 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc-----------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCC-----C
Confidence 3466789999999999886 322 136864 3342 6999999532 2223588888887 7
Q ss_pred CcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc
Q 038011 97 NVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS 176 (448)
Q Consensus 97 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 176 (448)
.+.|.+|..+..+++|+.|+|++|.+.|.+| ..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus 429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 7888888888888888888888888877777 567778888888888888877777777778888888888887777777
Q ss_pred hhccCC-CCCCEEEccCcc
Q 038011 177 SSVAGL-KNLEQLILNGNS 194 (448)
Q Consensus 177 ~~~~~l-~~L~~L~l~~n~ 194 (448)
..+... .++..+++.+|.
T Consensus 508 ~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred hHHhhccccCceEEecCCc
Confidence 766542 345566666654
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3.7e-13 Score=120.33 Aligned_cols=230 Identities=24% Similarity=0.315 Sum_probs=147.8
Q ss_pred eEEEEeCCCCCCCCCCcccccc----hhhcCCCCCCEEECCCCC---CCCCCCc------cccCCCCCCCEEeCCCCccC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVL----KLIFRIRSLMTLDLSYNA---MKGEIPR------TGFANLTKLVYLDLNNNNLN 148 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~----~~~~~l~~L~~L~L~~n~---~~~~~~~------~~~~~l~~L~~L~Ls~n~l~ 148 (448)
.++.+++++ +.+..... +.+.+.++|+..++++-. ...++|. .++.++++|++|+||+|.+.
T Consensus 31 s~~~l~lsg-----nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 31 SLTKLDLSG-----NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ceEEEeccC-----CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 789999998 77765443 456677888888887642 1123331 45667789999999999887
Q ss_pred ccCCcc----ccCCCCCCEEEcccCCCCCccc-------------hhccCCCCCCEEEccCccCCC----CCccccCCCC
Q 038011 149 GSIPSQ----LFSLRYLEFLDLSTNAIGGKLS-------------SSVAGLKNLEQLILNGNSIQG----QIPAEIGNLT 207 (448)
Q Consensus 149 ~~~~~~----~~~l~~L~~L~L~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~i~~----~~~~~l~~l~ 207 (448)
...+.. +.++..|++|.|.+|.+..... .....-++|+++...+|++.. .+...++..+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 554443 3467889999998887642211 122445678888888887653 2334456667
Q ss_pred CCCeEecccCcccc----ccchhccCCCCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCcccchhhh----
Q 038011 208 NLHKLLLLQNEFSG----GIPLSLLQLRELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGAIPQSI---- 275 (448)
Q Consensus 208 ~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---- 275 (448)
.|+.+.+..|.+.. .....+..++.|++||+.+|.++.. +...+..+++|+.|++++|.+.......|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 78888888877652 1234566778888888888776532 23345566777777777777764433322
Q ss_pred -hCCCCCcEEeccCCcccccc----chhhhCCCCCCEEEccCCcCC
Q 038011 276 -RDMTKLVTLRLDSNVLAGEI----PTWLFDLHDMKSLFLGGNKLK 316 (448)
Q Consensus 276 -~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~ 316 (448)
...|.|+.+.+.+|.++... ...+...+.|+.|++++|.+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22567777777777776422 223344667777777777763
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=3.7e-13 Score=120.37 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccCcCcc----cchhhhhCCCCCcEEeccCCccccc----cchh
Q 038011 231 RELETLDLRRNSLSGEI----PNDIGILANMTTLALSNNALTG----AIPQSIRDMTKLVTLRLDSNVLAGE----IPTW 298 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 298 (448)
+.|+++...+|++.... ...+...+.|+.+.++.|.+.. .....+..+++|+.||+.+|.++.. +.+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 44555555555443211 1122333445555555554431 1223445555555555555555432 1223
Q ss_pred hhCCCCCCEEEccCCcCCCCC
Q 038011 299 LFDLHDMKSLFLGGNKLKWNN 319 (448)
Q Consensus 299 l~~~~~L~~L~L~~n~l~~~~ 319 (448)
+..+++|+.|++++|.+...+
T Consensus 237 L~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred hcccchheeeccccccccccc
Confidence 334445555555555544433
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=1e-11 Score=120.88 Aligned_cols=197 Identities=34% Similarity=0.501 Sum_probs=108.2
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC-CCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK-NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN 217 (448)
Q Consensus 139 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 217 (448)
.+++..+.+. .....+..++.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555553 12223344455666666666665 3444444443 6666666666665 44445566666666666666
Q ss_pred ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccch
Q 038011 218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPT 297 (448)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 297 (448)
++.. ++......+.|+.|++++|.++ .+|........|+++.+++|... ..+..+..+..+..+.+.+|++. ..+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 6663 3333335566666666666665 44443334445666666666432 23344555566666666666654 2245
Q ss_pred hhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc
Q 038011 298 WLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP 344 (448)
Q Consensus 298 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 344 (448)
.+..++++++|++++|.+..... +....+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 55566666666666666665443 4444455566665555554433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=1.4e-11 Score=120.01 Aligned_cols=201 Identities=34% Similarity=0.425 Sum_probs=153.5
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCC-CCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT-NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 240 (448)
..+++..+.+.. ....+..++.++.+++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 367787777642 2344556688999999999998 6666676664 9999999999998 4556688899999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 320 (448)
|.++ .++......+.|+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++... .
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence 9998 55555557889999999999998 55555556667999999999543 4566788888999999888887653 1
Q ss_pred cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCccc
Q 038011 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL 371 (448)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 371 (448)
..+....+++.|++++|.++.... ++...+++.|++++|.+....+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 234445568899999998875444 7788889999999888876555443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2.7e-13 Score=128.33 Aligned_cols=158 Identities=32% Similarity=0.486 Sum_probs=70.9
Q ss_pred cchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccC
Q 038011 102 VLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG 181 (448)
Q Consensus 102 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 181 (448)
+|..+..|..|+.+.++.|.+. .+| ..+..+..|++|+++.|++. .+|..++.|+ |+.|.+++|+++ .+|..++.
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r-~ip-~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIR-TIP-EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred CchHHHHHHHHHHHHHHhccce-ecc-hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 3334444444444444444444 344 34444444444444444444 3444444433 444444444443 34444444
Q ss_pred CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEE
Q 038011 182 LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLA 261 (448)
Q Consensus 182 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 261 (448)
...|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+|..|..++.|++|-
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeee
Confidence 444444444444444 33444444444444444444444 233333322 2444444444444 4444444444444444
Q ss_pred cccCcCc
Q 038011 262 LSNNALT 268 (448)
Q Consensus 262 l~~n~l~ 268 (448)
|.+|.+.
T Consensus 241 LenNPLq 247 (722)
T KOG0532|consen 241 LENNPLQ 247 (722)
T ss_pred eccCCCC
Confidence 4444444
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=6.1e-13 Score=125.99 Aligned_cols=195 Identities=28% Similarity=0.365 Sum_probs=149.5
Q ss_pred CCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEE
Q 038011 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF 309 (448)
Q Consensus 230 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 309 (448)
+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+++++.|+++ ..|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334456788888887 77888888888888888888887 67778888889999999999987 6777787777 88899
Q ss_pred ccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccccc
Q 038011 310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS 389 (448)
Q Consensus 310 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 389 (448)
+++|+++..+.. +.....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.. +|..+....|..||++.|++. .
T Consensus 150 ~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccccCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee-e
Confidence 999988865543 224457888888888887 466778888888888888888874 444444666888888888888 7
Q ss_pred CChhhcCCCCCCEEECcCCcccccCcccccCCC---CCCEEeCcCCc
Q 038011 390 LPPRLFESRNLSVLVLSRNNFSGELPETMGQST---SVMVLMLSSNN 433 (448)
Q Consensus 390 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~ 433 (448)
+|..|..++.|++|-|.+|++. +.|..++-.- -.++|+..-|+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8888888888888888888888 5666554322 23566666664
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=4.1e-12 Score=111.42 Aligned_cols=133 Identities=28% Similarity=0.376 Sum_probs=88.6
Q ss_pred ccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCC
Q 038011 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306 (448)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 306 (448)
+..++.|+.+|+++|.++ .+.+.+.-.|.++.|++++|.+... ..++.+++|+.||+++|.++ .+..+-..+-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344566777777777776 5555666677777788877777633 33667777888888887776 3444445667777
Q ss_pred EEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC-cchhhhcCCCCCEEeCCCCcccc
Q 038011 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP-MPLWLSNQTELAFLDLSENELEG 365 (448)
Q Consensus 307 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~ 365 (448)
+|.+++|.+.... .+..+.+|..|++++|++... ....++++|.|+.+.+.+|.+.+
T Consensus 356 tL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7888877766432 333444677777777777532 22346777888888888887764
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-11 Score=113.73 Aligned_cols=206 Identities=22% Similarity=0.205 Sum_probs=107.2
Q ss_pred cCCCCCCEEEcccCcCCCCCC--ccccCCCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCccccccch-hhhCC
Q 038011 228 LQLRELETLDLRRNSLSGEIP--NDIGILANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNVLAGEIPT-WLFDL 302 (448)
Q Consensus 228 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~ 302 (448)
.++.+|+.+.+.++... ..+ .....+++++.|+++.|-+... +......+|+|+.|+++.|.+.....+ .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35677888888877664 222 2455677777777777765532 223345567777777777766522111 11235
Q ss_pred CCCCEEEccCCcCCCCCCccc-CCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc--CcccCCCcccEE
Q 038011 303 HDMKSLFLGGNKLKWNNNVSI-VPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY--PQWLAEPNLGTV 379 (448)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~L~~L 379 (448)
+.|+.|.+++|.++.-....+ ..+++++.|++..|............+..|+.||+++|++.... +.....+.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 566666666666654332221 22335666666666422222222334455666666666654221 222223446666
Q ss_pred EccCCccccc-CChh-----hcCCCCCCEEECcCCcccccCc--ccccCCCCCCEEeCcCCccc
Q 038011 380 ILSDNMLTGS-LPPR-----LFESRNLSVLVLSRNNFSGELP--ETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 380 ~L~~n~l~~~-~~~~-----~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~i~ 435 (448)
+++.+.+... .|+. ....++|+.|+++.|++.+ ++ ..+..+++|+.|.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence 6666655521 2221 2334566666666666642 21 22334555566665555555
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.9e-12 Score=116.35 Aligned_cols=207 Identities=25% Similarity=0.252 Sum_probs=89.8
Q ss_pred CCCCCEEECCCCCCCCCCC-ccccCCCCCCCEEeCCCCccCcc--CCccccCCCCCCEEEcccCCCCCccchh-ccCCCC
Q 038011 109 IRSLMTLDLSYNAMKGEIP-RTGFANLTKLVYLDLNNNNLNGS--IPSQLFSLRYLEFLDLSTNAIGGKLSSS-VAGLKN 184 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~ 184 (448)
+.+|+.+.|.++.+. ..+ ......|++++.|||+.|-+... .......+|+|+.|+++.|++....... -..+++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445555555555544 211 12344555555555555554421 1122334555555555555543111111 123445
Q ss_pred CCEEEccCccCCCC-CccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEEc
Q 038011 185 LEQLILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLAL 262 (448)
Q Consensus 185 L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l 262 (448)
|+.|.++.|.++.. +...+..+|+|+.|++..|............++.|+.|++++|.+-... -...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 55555555555421 1122234455555555555321122222233445555555555543211 123344555555555
Q ss_pred ccCcCccc-chhh-----hhCCCCCcEEeccCCcccc-ccchhhhCCCCCCEEEccCCcCC
Q 038011 263 SNNALTGA-IPQS-----IRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMKSLFLGGNKLK 316 (448)
Q Consensus 263 ~~n~l~~~-~~~~-----~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~ 316 (448)
+.+.+... .|+. ...+++|++|++..|++.+ .....+..+++|+.|.+..|.+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55554422 1111 2334555555555555531 11122333445555555555444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=9.8e-11 Score=98.33 Aligned_cols=126 Identities=30% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhc-cCCCCC
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNL 185 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L 185 (448)
+...++.|+|++|.|+ .+. .+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|+++... +.+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred cccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 3445777888888777 453 243 56778888888888773 2 34667777888888888776432 233 357778
Q ss_pred CEEEccCccCCCC-CccccCCCCCCCeEecccCcccccc---chhccCCCCCCEEEcc
Q 038011 186 EQLILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGI---PLSLLQLRELETLDLR 239 (448)
Q Consensus 186 ~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~ 239 (448)
++|++++|+|... .-..+..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888887777531 1234556677777777777665321 1134456666666544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2e-11 Score=107.23 Aligned_cols=86 Identities=27% Similarity=0.304 Sum_probs=39.4
Q ss_pred hhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc-CcccccCCCCC
Q 038011 347 LSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE-LPETMGQSTSV 424 (448)
Q Consensus 347 ~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L 424 (448)
+..+++|+.||+|+|.++. ...|-. .-+++.|.|++|.+. . -..+..+-+|..||+++|+|... -...++++|-|
T Consensus 325 La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 4444555555555555442 222221 223555555555544 1 12234444555555555555421 11334555555
Q ss_pred CEEeCcCCccc
Q 038011 425 MVLMLSSNNFS 435 (448)
Q Consensus 425 ~~L~l~~n~i~ 435 (448)
+.+.|.+|.+.
T Consensus 402 E~l~L~~NPl~ 412 (490)
T KOG1259|consen 402 ETLRLTGNPLA 412 (490)
T ss_pred HHHhhcCCCcc
Confidence 55555555555
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=6.5e-11 Score=123.55 Aligned_cols=325 Identities=24% Similarity=0.224 Sum_probs=163.9
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc--cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN--LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
....+.+.+-+|.+. .++ . -..+++|++|-+..|. +.....+.|..++.|++||+++|.-.+.+|..++.+-+|+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~-~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIA-G-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchh-hcc-C-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 345566666666554 333 1 2233467777666664 4433334466677777777777665566777777777777
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC--CCCCccccCCCCCCEEEccc
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS--GEIPNDIGILANMTTLALSN 264 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~ 264 (448)
+|+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 7777777776 67777777777777777766554444555555777777776654311 11112223344444444322
Q ss_pred CcCcccchhhhhCCCCCc----EEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCC------CccccEEEc
Q 038011 265 NALTGAIPQSIRDMTKLV----TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP------KCMLTELSL 334 (448)
Q Consensus 265 n~l~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l 334 (448)
... .+...+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+........ ..++..+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 221 0111112222222 2222222222 33445666777888888777765432211111 112333333
Q ss_pred cCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCccccc-CChhhcCCCCCCEEECcCCcccc
Q 038011 335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 335 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~ 412 (448)
.++... ..+.+....++|+.|.+..+.....+.+.... ..++.+.+..+.+.+. .......++++..+.+.+=.+..
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~ 833 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEE 833 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhh
Confidence 333222 23334445688888888877655444333322 3355555666665543 23334444544444444433221
Q ss_pred cCcc---cccCCCCCCEEeCcCC-cccccCchh
Q 038011 413 ELPE---TMGQSTSVMVLMLSSN-NFSGHVPKS 441 (448)
Q Consensus 413 ~~~~---~~~~l~~L~~L~l~~n-~i~~~~p~~ 441 (448)
...+ ....+|.+..+.+.+| ..--..|+.
T Consensus 834 ~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 834 LIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred eehhcCcccccCccccccceeccccceeecCCc
Confidence 1111 1244566666666664 322245543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=3.8e-10 Score=115.25 Aligned_cols=112 Identities=28% Similarity=0.409 Sum_probs=97.6
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECc
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLS 406 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 406 (448)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+.. .+|+.|+|++|+++|.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999999999999999999999999999988876655 449999999999999999999999999999999
Q ss_pred CCcccccCcccccCC-CCCCEEeCcCCcccccCc
Q 038011 407 RNNFSGELPETMGQS-TSVMVLMLSSNNFSGHVP 439 (448)
Q Consensus 407 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~p 439 (448)
+|+++|.+|..+... .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999888653 467788999987554444
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=8.6e-11 Score=122.61 Aligned_cols=253 Identities=26% Similarity=0.267 Sum_probs=163.7
Q ss_pred CCCCCCEEECCCCC--CCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011 108 RIRSLMTLDLSYNA--MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL 185 (448)
Q Consensus 108 ~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 185 (448)
.+++|++|-+.+|. +. .++...|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++..|
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 34579999998886 44 666567899999999999998876789999999999999999999987 889999999999
Q ss_pred CEEEccCccCCCCCccccCCCCCCCeEecccCccc--cccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC----E
Q 038011 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT----T 259 (448)
Q Consensus 186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~ 259 (448)
.+|++..+.....+|.....+++|++|.+...... ...-..+..+..|+.+....... .+-..+..+..|. .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 99999987755456777777999999998775422 22223345555666555543322 1111222233322 2
Q ss_pred EEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhC------CCCCCEEEccCCcCCCCCCcccCCCccccEEE
Q 038011 260 LALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD------LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS 333 (448)
Q Consensus 260 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 333 (448)
+.+..+... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++....... .....++|+.|.
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLS 776 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccEEE
Confidence 222222222 34456677888999999888876432222111 2223333333322211111 112234899999
Q ss_pred ccCCcCcCCcchhhhcCCCCCEEeCCCCccccc
Q 038011 334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366 (448)
Q Consensus 334 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 366 (448)
+..|.....+......+..+..+.+..+.+.+.
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccc
Confidence 999987766666666666677666666666544
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.3e-10 Score=97.61 Aligned_cols=108 Identities=36% Similarity=0.443 Sum_probs=25.1
Q ss_pred cCCCCCCCEEeCCCCccCccCCcccc-CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCcccc-CCCCC
Q 038011 131 FANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTN 208 (448)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~ 208 (448)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3344456666666666652 2 2343 355666666666666532 235555666666666666653 22222 23555
Q ss_pred CCeEecccCccccc-cchhccCCCCCCEEEcccCcC
Q 038011 209 LHKLLLLQNEFSGG-IPLSLLQLRELETLDLRRNSL 243 (448)
Q Consensus 209 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l 243 (448)
|++|++++|++... .-..+..+++|++|++.+|.+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 66666655555421 112233444455555544444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.4e-10 Score=113.15 Aligned_cols=224 Identities=27% Similarity=0.248 Sum_probs=98.7
Q ss_pred cCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCE
Q 038011 180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTT 259 (448)
Q Consensus 180 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 259 (448)
..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|++++|.++.. ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 334444444444444431 111133444455555555544432 1233344455555555554421 12333455555
Q ss_pred EEcccCcCcccch-hhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCc
Q 038011 260 LALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS 338 (448)
Q Consensus 260 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 338 (448)
+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.+.............|+.+++++|.
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR 243 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence 5555555543322 1 3445555666666655542 1222333333334555555543221111111125666666665
Q ss_pred CcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccccc---CChh-hcCCCCCCEEECcCCccccc
Q 038011 339 VRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS---LPPR-LFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~-~~~~~~L~~L~L~~n~l~~~ 413 (448)
+... +..+..+..+..+++.+|++... ...-..+.+..+....+++... .... ....+.++...+..|++...
T Consensus 244 i~~~-~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 ISRS-PEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccc-cccccccccccccchhhcccccc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 5422 13345556666666666666522 1112222344455555554421 1111 23345666666666665543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-10 Score=113.45 Aligned_cols=247 Identities=27% Similarity=0.297 Sum_probs=157.2
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
..+..++.+.+..|.+. .+. ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchh
Confidence 35566777778888776 332 457788889999999988873 333367788899999999988644 3466777788
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
.|++.+|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+.....+..+++..|
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 889998888732 345567888888888888875433 1 46677888888888877532 22333444555566666
Q ss_pred cCcccchhhhhCCC--CCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC-
Q 038011 266 ALTGAIPQSIRDMT--KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP- 342 (448)
Q Consensus 266 ~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~- 342 (448)
.++..- .+.... +|+.+++.+|.+. ..+..+..+..+..+++..|++.... .+.....+..+....+.+...
T Consensus 219 ~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 219 KISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred cceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence 665221 112222 3778888888776 33345566777778888877776543 223333455555555554321
Q ss_pred --cchh-hhcCCCCCEEeCCCCccccccC
Q 038011 343 --MPLW-LSNQTELAFLDLSENELEGTYP 368 (448)
Q Consensus 343 --~~~~-~~~~~~L~~L~ls~n~~~~~~~ 368 (448)
.... ....+.++.+.+..|.+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhccccccccccccccccccCccccccc
Confidence 1111 3445667777777776655443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.3e-09 Score=73.95 Aligned_cols=59 Identities=47% Similarity=0.675 Sum_probs=32.7
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCC
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 170 (448)
+|++|++++|.+. .++...|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555 4554555555555555555555554444555555555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.5e-09 Score=72.53 Aligned_cols=61 Identities=36% Similarity=0.444 Sum_probs=39.2
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccC
Q 038011 135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195 (448)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 195 (448)
++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766655555666666666666666666655555666666666666666653
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.55 E-value=8.9e-08 Score=60.44 Aligned_cols=41 Identities=41% Similarity=0.737 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCC--CCCccceeEEeC
Q 038011 26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSS--SDCCHWEMVRCF 75 (448)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~~v~c~ 75 (448)
+++|++||++||+.+..++.. .+.+|+.+ .+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~---------~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSG---------VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-C---------CCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCc---------ccccCCCcCCCCCeeeccEEeC
Confidence 367999999999999965544 68999987 799999999995
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=2e-08 Score=87.45 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=94.2
Q ss_pred eEEEEeCCCCCCCCCCcccccch----hhcCCCCCCEEECCCCCCC---CCCC------ccccCCCCCCCEEeCCCCccC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLK----LIFRIRSLMTLDLSYNAMK---GEIP------RTGFANLTKLVYLDLNNNNLN 148 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~---~~~~------~~~~~~l~~L~~L~Ls~n~l~ 148 (448)
.++.++||+ +.+...... .+.+-++|+..+++.-... +.++ ..++-+||+|+..+||.|.|.
T Consensus 31 ~~~evdLSG-----NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 31 ELVEVDLSG-----NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred ceeEEeccC-----CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 677888888 766655443 3455667777777654321 1111 134567777777777777776
Q ss_pred ccCCcc----ccCCCCCCEEEcccCCCCCccch-------------hccCCCCCCEEEccCccCCCCCcc-----ccCCC
Q 038011 149 GSIPSQ----LFSLRYLEFLDLSTNAIGGKLSS-------------SVAGLKNLEQLILNGNSIQGQIPA-----EIGNL 206 (448)
Q Consensus 149 ~~~~~~----~~~l~~L~~L~L~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~i~~~~~~-----~l~~l 206 (448)
...|+. +++-..|.+|.+++|.+...... ...+-|.|+++....|++.. .+. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 555543 34556677777777765311111 11233556666666665542 111 12222
Q ss_pred CCCCeEecccCccccc-----cchhccCCCCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccCcCc
Q 038011 207 TNLHKLLLLQNEFSGG-----IPLSLLQLRELETLDLRRNSLSGEI----PNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 207 ~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~ 268 (448)
.+|+.+.+..|.|... ....+..+.+|++||+.+|.++... ...+..++.|++|.+.+|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 3555666666555421 1112334555666666665554221 122334445555555555444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-09 Score=95.88 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCC-CCc-cchhccCCCCCCEE
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI-GGK-LSSSVAGLKNLEQL 188 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~-~~~-~~~~~~~l~~L~~L 188 (448)
.|++|||+...++..-....+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+.- +.. ..-.+.+++.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3556666665554332223345556666666666666555555555556666666665432 111 11123455666666
Q ss_pred EccCccCCCCCccc-cC-CCCCCCeEecccCccc---cccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEc
Q 038011 189 ILNGNSIQGQIPAE-IG-NLTNLHKLLLLQNEFS---GGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLAL 262 (448)
Q Consensus 189 ~l~~n~i~~~~~~~-l~-~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 262 (448)
+++.+.+....... +. --++|+.|++++++-. ..+..-..++++|.+||+++|. ++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66655543211110 00 0134555555554211 0111112345555555555543 22222233344555555555
Q ss_pred ccCc
Q 038011 263 SNNA 266 (448)
Q Consensus 263 ~~n~ 266 (448)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.4e-09 Score=91.19 Aligned_cols=178 Identities=25% Similarity=0.272 Sum_probs=107.0
Q ss_pred CCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCc-cccc-cchhccCCCCCCEE
Q 038011 160 YLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE-FSGG-IPLSLLQLRELETL 236 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L 236 (448)
.|+++||++..++.. .-..+..+.+|+.|.+.++++.+.+...+....+|+.++++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 478888887766522 22335667788888888888877777777777888888887753 3321 11235677888888
Q ss_pred EcccCcCCCCCCcc-c-cCCCCCCEEEcccCcCc--cc-chhhhhCCCCCcEEeccCCc-cccccchhhhCCCCCCEEEc
Q 038011 237 DLRRNSLSGEIPND-I-GILANMTTLALSNNALT--GA-IPQSIRDMTKLVTLRLDSNV-LAGEIPTWLFDLHDMKSLFL 310 (448)
Q Consensus 237 ~l~~n~l~~~~~~~-~-~~~~~L~~L~l~~n~l~--~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L 310 (448)
++++|.+....... + .--++|+.|+++++.-. .. +.-....+++|.+||+++|. ++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765432211 1 12356777888776321 11 22223567888888887753 34344455667777777777
Q ss_pred cCCcCCC-CCCcccCCCccccEEEccCC
Q 038011 311 GGNKLKW-NNNVSIVPKCMLTELSLRSC 337 (448)
Q Consensus 311 ~~n~l~~-~~~~~~~~~~~L~~L~l~~n 337 (448)
+.|..-. .....+...++|.+|++-++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7765321 11223334445666666555
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=9.7e-09 Score=100.64 Aligned_cols=198 Identities=26% Similarity=0.231 Sum_probs=130.2
Q ss_pred CCCCCCEEEccCccCCCCC-ccccCCCCCCCeEecccCccccccchhccCC-CCCCEEEcccCc------CC---CCCCc
Q 038011 181 GLKNLEQLILNGNSIQGQI-PAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL-RELETLDLRRNS------LS---GEIPN 249 (448)
Q Consensus 181 ~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~------l~---~~~~~ 249 (448)
-+++++.+.+-.-.-.+.. |-.+..+..|++|.+.++.+.. ..++..+ ..|++|-..+.- ++ +.+..
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 3444555554333222222 5566777899999999988763 1112111 233443222110 00 11111
Q ss_pred cccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccc
Q 038011 250 DIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCML 329 (448)
Q Consensus 250 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 329 (448)
.+ .+..|...+.++|.+. .+...+.-++.++.|++++|+++.. +.+..+++|+.|||++|.+..++......+ .|
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KL 234 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hh
Confidence 11 2346888888999887 5556777789999999999999843 478899999999999999987665443333 59
Q ss_pred cEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc--CcccCCCcccEEEccCCccc
Q 038011 330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY--PQWLAEPNLGTVILSDNMLT 387 (448)
Q Consensus 330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~L~~L~L~~n~l~ 387 (448)
..|.+++|.++.. ..+.++.+|+.||+++|-+.+.- ........|+.|.|.||++.
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999988743 24678899999999999887532 12223344899999999886
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.2e-08 Score=87.24 Aligned_cols=211 Identities=22% Similarity=0.199 Sum_probs=107.3
Q ss_pred cCCCCCCEEECCCCCCCCCCCcccc-CCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGF-ANLTKLVYLDLNNNNLNG--SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK 183 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 183 (448)
+..+.++.+.+.++.|...-....| ..++.++.+||.+|.+++ .+...+.++|+|++|+++.|++...+...=....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 3334455555566655432222222 235677777777777763 2333345677777777777776533322113455
Q ss_pred CCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccc--cchhccC-CCCCCEEEcccCcCCC--CCCccccCCCCC
Q 038011 184 NLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGG--IPLSLLQ-LRELETLDLRRNSLSG--EIPNDIGILANM 257 (448)
Q Consensus 184 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~~~~L 257 (448)
+|++|.+.+..+.. .....+..+|.+++|.++.|.+... -...... -+.+++++...|.... .....-.-++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 67777776665532 2223445666677777776643210 0011111 1234444444432110 000111234566
Q ss_pred CEEEcccCcCcccc-hhhhhCCCCCcEEeccCCcccc-ccchhhhCCCCCCEEEccCCcCCC
Q 038011 258 TTLALSNNALTGAI-PQSIRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 258 ~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
..+.+..|++.... .+.+..++.+..|.++.+++.. ...+.+..++.|+.|.++++.+.+
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66666666554322 2334445566666777766653 123455667777777777766654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=6e-09 Score=102.07 Aligned_cols=196 Identities=26% Similarity=0.322 Sum_probs=88.5
Q ss_pred CCCCCEEECCCCCCCCCC-CccccCCCCCCCEEeCCCCccCccCCccccCC-CCCCEEEcccCCCC---Cccch---hcc
Q 038011 109 IRSLMTLDLSYNAMKGEI-PRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL-RYLEFLDLSTNAIG---GKLSS---SVA 180 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~---~~~~~---~~~ 180 (448)
+++++.|.+-...-.+.. | -.+..+..|++|.+.++.+.. ...+..+ ..|++|.-.+ .+. ..+.. .+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~p-i~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEP-ISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCC-ceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccc
Confidence 445555555443322222 3 457788899999999998762 1111111 1233332211 110 00000 000
Q ss_pred C---CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCc-cccCCCC
Q 038011 181 G---LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPN-DIGILAN 256 (448)
Q Consensus 181 ~---l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ 256 (448)
+ --.|.+.+.+.|.+. .+..++.-++.++.|+|++|+++.. ..+..+++|++||++.|.++ .+|. ....+.
T Consensus 159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-
Confidence 0 013444555555554 4444455555555555555555532 24455555555555555554 2221 111222
Q ss_pred CCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccc-cchhhhCCCCCCEEEccCCcC
Q 038011 257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLHDMKSLFLGGNKL 315 (448)
Q Consensus 257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l 315 (448)
|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+. -...+..+..|+.|+|.||.+
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555555555421 2344455555555555544431 111233344455555555544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.2e-07 Score=83.69 Aligned_cols=201 Identities=23% Similarity=0.165 Sum_probs=104.2
Q ss_pred CCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc-ccchhhhCCCCCC
Q 038011 230 LRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMK 306 (448)
Q Consensus 230 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~ 306 (448)
++.++.+|+.+|.+++ .+...+.++|.|+.|+++.|++...+-..-....+|++|.+.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555555442 122223455555555555555543221111233456666665555431 1223344566666
Q ss_pred EEEccCCcCCCC---CCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCccccccCccc--CCCcccEE
Q 038011 307 SLFLGGNKLKWN---NNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENELEGTYPQWL--AEPNLGTV 379 (448)
Q Consensus 307 ~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~--~~~~L~~L 379 (448)
+|.++.|.+... ....-+..+.++.+.+..|...- ..-.--..+|++..+-+..|.+...-.+-- ..+.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 666666632211 11111122245555555553321 111112346788888888887764332221 12346678
Q ss_pred EccCCccccc-CChhhcCCCCCCEEECcCCcccccCccc------ccCCCCCCEEeCc
Q 038011 380 ILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSGELPET------MGQSTSVMVLMLS 430 (448)
Q Consensus 380 ~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l~ 430 (448)
+|+.+++... -.+.+..+++|.-|.+++|++.+.+-.. ++.+++++.|+=+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8888888732 2245677888999999999887544322 3556777776544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=4.1e-07 Score=79.37 Aligned_cols=213 Identities=20% Similarity=0.228 Sum_probs=121.2
Q ss_pred hhcCCCCCCEEECCCCCCCCCCCc---cccCCCCCCCEEeCCCCccC---ccC-------CccccCCCCCCEEEcccCCC
Q 038011 105 LIFRIRSLMTLDLSYNAMKGEIPR---TGFANLTKLVYLDLNNNNLN---GSI-------PSQLFSLRYLEFLDLSTNAI 171 (448)
Q Consensus 105 ~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~L~~n~~ 171 (448)
.+..+..++.++||+|.|..+-.. ..+.+-.+|+..+++.-... +.+ ..++.+||+|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344577889999999988743221 33455677888877764221 112 23455788888888888887
Q ss_pred CCccchh----ccCCCCCCEEEccCccCCCC----Cccc---------cCCCCCCCeEecccCccccccc----hhccCC
Q 038011 172 GGKLSSS----VAGLKNLEQLILNGNSIQGQ----IPAE---------IGNLTNLHKLLLLQNEFSGGIP----LSLLQL 230 (448)
Q Consensus 172 ~~~~~~~----~~~l~~L~~L~l~~n~i~~~----~~~~---------l~~l~~L~~L~l~~n~~~~~~~----~~l~~l 230 (448)
....|+. ++.-..|.+|.+++|.+... +..+ ..+-|.|+.+....|++..... ..+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 6655543 45667788888888876421 1111 1234667777777777652111 122333
Q ss_pred CCCCEEEcccCcCCCCCC-----ccccCCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccCCccccccchhhh-
Q 038011 231 RELETLDLRRNSLSGEIP-----NDIGILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDSNVLAGEIPTWLF- 300 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~- 300 (448)
..|+.+.+..|.+..... ..+..+.+|+.|++.+|.++.. ....+...+.|++|.+.+|-++......+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 467777777776552211 1122456677777777666522 223444555666666666666543332221
Q ss_pred -----CCCCCCEEEccCCcCCC
Q 038011 301 -----DLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 301 -----~~~~L~~L~L~~n~l~~ 317 (448)
..|+|..|...+|.+.+
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HhhhhcCCCccccccchhhhcC
Confidence 24556666666655443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.9e-06 Score=54.45 Aligned_cols=37 Identities=35% Similarity=0.494 Sum_probs=24.3
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011 398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 398 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
++|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777777 45555677777777777777776
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=3.8e-07 Score=71.36 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=15.4
Q ss_pred cEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011 330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 364 (448)
+.|++++|.++ .+|..+..++.|+.|++++|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 33444444443 23333455555555555555554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.4e-05 Score=50.48 Aligned_cols=36 Identities=44% Similarity=0.639 Sum_probs=15.2
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCC
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIG 172 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 172 (448)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=1e-06 Score=69.04 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=45.0
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
....|+..+|++|.+. .+|...-.+++..+.|++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++-.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3344555555555555 444333344445555555555555 44555555555555555555554 34444444555555
Q ss_pred EEccCccCC
Q 038011 188 LILNGNSIQ 196 (448)
Q Consensus 188 L~l~~n~i~ 196 (448)
|+..+|.+.
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 555555444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5.6e-05 Score=71.71 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=71.6
Q ss_pred ccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCC-ccccccchhhhCCCCC
Q 038011 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN-VLAGEIPTWLFDLHDM 305 (448)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L 305 (448)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.--..+|..+ .++|++|++++| .+. .+| +.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 445678888888888776 4452 23468888887753323455444 247888888877 433 333 346
Q ss_pred CEEEccCCcCCCCCCcccCCCccccEEEccCCcCc--CCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccC
Q 038011 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR--GPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSD 383 (448)
Q Consensus 306 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~ 383 (448)
+.|++..+....++ .+|. +|+.|.+.+++.. ...|.. -.++|+.|++++|... ..|..+ +.+|+.|.++.
T Consensus 115 e~L~L~~n~~~~L~--~LPs--sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L-P~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDSIK--NVPN--GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL-PESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcccc--cCcc--hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc-cccCcEEEecc
Confidence 66776655543211 2221 4666666432211 001100 1145666666665543 222211 13366666655
Q ss_pred C
Q 038011 384 N 384 (448)
Q Consensus 384 n 384 (448)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=3.2e-05 Score=64.90 Aligned_cols=103 Identities=31% Similarity=0.294 Sum_probs=53.1
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCC-CccccCCCCCCCeEec
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQ-IPAEIGNLTNLHKLLL 214 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l 214 (448)
+...+|+++|.+.. ...|..++.|.+|.+.+|+|+.+.|.--..+++|++|.+.+|++... .-+-+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45556666666542 13455566666666666666655554444555666666666665410 0122344555666665
Q ss_pred ccCcccccc---chhccCCCCCCEEEccc
Q 038011 215 LQNEFSGGI---PLSLLQLRELETLDLRR 240 (448)
Q Consensus 215 ~~n~~~~~~---~~~l~~l~~L~~L~l~~ 240 (448)
-+|.++..- ...+..+|+|+.||++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555544210 11234455555555543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=1e-05 Score=82.99 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=59.2
Q ss_pred CCCCEEeCCCCccC-ccCCcccc-CCCCCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011 135 TKLVYLDLNNNNLN-GSIPSQLF-SLRYLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK 211 (448)
Q Consensus 135 ~~L~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 211 (448)
.+|++|++++...- ..=|..++ .+|+|+.|.+++-.+... ......++++|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777765422 11111222 467777777766554322 223345667777777777776632 55666777777
Q ss_pred EecccCcccc-ccchhccCCCCCCEEEcccCc
Q 038011 212 LLLLQNEFSG-GIPLSLLQLRELETLDLRRNS 242 (448)
Q Consensus 212 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~ 242 (448)
|.+.+-.+.. ..-..+..+++|++||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 7666555442 112245556677777776544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.0001 Score=69.97 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=78.3
Q ss_pred hhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc-CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCC
Q 038011 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK-LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352 (448)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 352 (448)
.+..+.+++.|++++|.++ .+|. -.++|++|.++++. +...+ ..+| .+|++|++++|.....+| ++
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP-~~LP--~nLe~L~Ls~Cs~L~sLP------~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLP-GSIP--EGLEKLTVCHCPEISGLP------ES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCC-chhh--hhhhheEccCcccccccc------cc
Confidence 3555788999999999887 4552 24569999998743 43322 1232 379999999984323344 35
Q ss_pred CCEEeCCCCccccccCcccCCCcccEEEccCCccc--ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCc
Q 038011 353 LAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT--GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLS 430 (448)
Q Consensus 353 L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 430 (448)
|+.|+++.+.... ++. .+++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|.++
T Consensus 114 Le~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 VRSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred cceEEeCCCCCcc-ccc--CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7777777655431 111 1123666666433211 011111 1246777777776654 3343332 366666666
Q ss_pred CC
Q 038011 431 SN 432 (448)
Q Consensus 431 ~n 432 (448)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.69 E-value=0.00012 Score=58.83 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=29.0
Q ss_pred cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCC
Q 038011 129 TGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTN 208 (448)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 208 (448)
.+|.++++|+.+.+.. .+......+|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3444444555555442 233233334444444555554442 3222223344444455555433 222122233444444
Q ss_pred CCeEecc
Q 038011 209 LHKLLLL 215 (448)
Q Consensus 209 L~~L~l~ 215 (448)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.64 E-value=0.00012 Score=58.83 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=63.8
Q ss_pred hhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011 104 KLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK 183 (448)
Q Consensus 104 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 183 (448)
..|.++++|+.+.+.. .+. .+....|.++++|+.+.+.++ +......+|.+++.++.+.+.. .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3567777888888875 455 666677888888888888775 5545556677887888888865 44334445677788
Q ss_pred CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL 233 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 233 (448)
+++.+.+..+ +.......+.++ +|+.+.+.. .+.......|..+++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 8888888664 443344556665 777777765 3333334455555555
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.2e-05 Score=80.66 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=34.9
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC-ccchhccCCCCCCE
Q 038011 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG-KLSSSVAGLKNLEQ 187 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~ 187 (448)
+|.|+.|.+++-.+...=-.....++|+|+.||+|+++++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 445555555444332110012234445555555555554422 344445555555444433321 11123344555555
Q ss_pred EEccCc
Q 038011 188 LILNGN 193 (448)
Q Consensus 188 L~l~~n 193 (448)
||++..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.0002 Score=60.27 Aligned_cols=83 Identities=28% Similarity=0.283 Sum_probs=44.8
Q ss_pred CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccc-cchhccCCCCCCEEEc
Q 038011 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG-IPLSLLQLRELETLDL 238 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l 238 (448)
+...+|+++|.+.. -..|..++.|.+|.+++|+|+.+-|.--..+++|..|.+.+|.+... --..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666666531 13455556666666666666654444444455666666666655421 0112445566666666
Q ss_pred ccCcCC
Q 038011 239 RRNSLS 244 (448)
Q Consensus 239 ~~n~l~ 244 (448)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 655544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.41 E-value=6e-06 Score=76.53 Aligned_cols=296 Identities=22% Similarity=0.134 Sum_probs=137.4
Q ss_pred CCCEEECCCCCCCCCCC-ccccCCCCCCCEEeCCCCc-cCccCCccc-cCCCCCCEEEcccCC-CCCccch-hccCCCCC
Q 038011 111 SLMTLDLSYNAMKGEIP-RTGFANLTKLVYLDLNNNN-LNGSIPSQL-FSLRYLEFLDLSTNA-IGGKLSS-SVAGLKNL 185 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-~~~~~~~-~~~~l~~L 185 (448)
.|+.|.+.++.-.+.-+ ...-..++++++|.+.++. +++..-..+ ..++.|+++++..|. ++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777777775332221 1333567777777777765 222211122 246677777777643 3322222 22456677
Q ss_pred CEEEccCcc-CCCC-CccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011 186 EQLILNGNS-IQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS 263 (448)
Q Consensus 186 ~~L~l~~n~-i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 263 (448)
++++++.+. +++. +-....++..++.+.+.++.=.+ -+.+.. .-+....+.++++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~--------------------~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLK--------------------AAAYCLEILKLNLQ 276 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHH--------------------HhccChHhhccchh
Confidence 777776653 2221 11112233334444333321100 000000 00111223333333
Q ss_pred cC-cCcccchhhh-hCCCCCcEEeccCCcccc-ccchhh-hCCCCCCEEEccCCc-CCCCCCcccCCC-ccccEEEccCC
Q 038011 264 NN-ALTGAIPQSI-RDMTKLVTLRLDSNVLAG-EIPTWL-FDLHDMKSLFLGGNK-LKWNNNVSIVPK-CMLTELSLRSC 337 (448)
Q Consensus 264 ~n-~l~~~~~~~~-~~~~~L~~L~l~~n~l~~-~~~~~l-~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~l~~n 337 (448)
.| .+++...-.+ ..+..|+.++.+++.-.+ ..-..+ .++++|+.+.+.+++ ++..+...+... ..|+.+++..+
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 32 2222211111 223455666655543221 111222 245666666666654 333333333322 25666666666
Q ss_pred cCcC--CcchhhhcCCCCCEEeCCCCcc-ccccCccc-----CCCcccEEEccCCccc-ccCChhhcCCCCCCEEECcCC
Q 038011 338 SVRG--PMPLWLSNQTELAFLDLSENEL-EGTYPQWL-----AEPNLGTVILSDNMLT-GSLPPRLFESRNLSVLVLSRN 408 (448)
Q Consensus 338 ~~~~--~~~~~~~~~~~L~~L~ls~n~~-~~~~~~~~-----~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n 408 (448)
.... .+...-.+++.|+.+.++++.. ++.....+ ....++.+.+++++.+ +..-..+..+++|+.+++-++
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4321 1222225677888888887754 22211111 1233777888888754 334456677788888888887
Q ss_pred cc-cc-cCcccccCCCCCCEEe
Q 038011 409 NF-SG-ELPETMGQSTSVMVLM 428 (448)
Q Consensus 409 ~l-~~-~~~~~~~~l~~L~~L~ 428 (448)
+- +. .+...-.++|+++..-
T Consensus 437 q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhHHHHhhCccceehh
Confidence 63 21 2333344566665543
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.22 E-value=1.6e-05 Score=73.80 Aligned_cols=254 Identities=18% Similarity=0.084 Sum_probs=140.2
Q ss_pred cCCCCCCEEEccCcc-CCCCCc-cccCCCCCCCeEecccC-ccccccch-hccCCCCCCEEEcccCc-CCCC-CCccccC
Q 038011 180 AGLKNLEQLILNGNS-IQGQIP-AEIGNLTNLHKLLLLQN-EFSGGIPL-SLLQLRELETLDLRRNS-LSGE-IPNDIGI 253 (448)
Q Consensus 180 ~~l~~L~~L~l~~n~-i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~ 253 (448)
..++++++|.+.++. +++..- ..-..+++|+++++..+ .++...-. ....+++|+++++++|. +++. +.....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345555555555443 111111 11124556666666552 23322212 22346777777777765 2221 1122345
Q ss_pred CCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCc-ccccc-chhhhCCCCCCEEEccCCcCC-CCCCcccC-CCc
Q 038011 254 LANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNV-LAGEI-PTWLFDLHDMKSLFLGGNKLK-WNNNVSIV-PKC 327 (448)
Q Consensus 254 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-~~~ 327 (448)
++.++.+...+|.-.+. +-..=..+..+.++++..+. +++.. ...-..+..|+.++.+++... ......+. ...
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 55566665555432111 11111334556667765553 33221 122235788999999886542 22222222 234
Q ss_pred cccEEEccCCc-CcCCcchhh-hcCCCCCEEeCCCCcccccc--Cc-ccCCCcccEEEccCCccc-ccC----ChhhcCC
Q 038011 328 MLTELSLRSCS-VRGPMPLWL-SNQTELAFLDLSENELEGTY--PQ-WLAEPNLGTVILSDNMLT-GSL----PPRLFES 397 (448)
Q Consensus 328 ~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~--~~-~~~~~~L~~L~L~~n~l~-~~~----~~~~~~~ 397 (448)
+|+.+.++.|+ ++..-...+ .+++.|+.+++..+...... -. ....+.|+.+.++++... +.. ...-...
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 89999999996 333222223 56789999999987653222 11 112245999999988743 321 2222445
Q ss_pred CCCCEEECcCCc-ccccCcccccCCCCCCEEeCcCCc
Q 038011 398 RNLSVLVLSRNN-FSGELPETMGQSTSVMVLMLSSNN 433 (448)
Q Consensus 398 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 433 (448)
..|+.+.|++++ +++...+.+..+++|+.+++-+++
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 789999999998 455666778889999999999885
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00042 Score=60.79 Aligned_cols=102 Identities=23% Similarity=0.140 Sum_probs=61.8
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCC--ccccccCccc-CCCcccEEEccCCccccc-CChhhcCCCCCCEE
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN--ELEGTYPQWL-AEPNLGTVILSDNMLTGS-LPPRLFESRNLSVL 403 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n--~~~~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L 403 (448)
.++.+++.+..++.. ..+-.+++|++|+++.| ++.+.++... ..|+|+++++++|++... --..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 566677777666532 23456778888888888 5544433322 237788888888887730 11223455678888
Q ss_pred ECcCCcccccCc---ccccCCCCCCEEeCcC
Q 038011 404 VLSRNNFSGELP---ETMGQSTSVMVLMLSS 431 (448)
Q Consensus 404 ~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 431 (448)
|+.+|..+..-- ..|.-+++|++||-..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888887664111 1233467777765443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00052 Score=60.23 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=17.1
Q ss_pred cCCCCCCCEEeCCCC--ccCccCCccccCCCCCCEEEcccCCC
Q 038011 131 FANLTKLVYLDLNNN--NLNGSIPSQLFSLRYLEFLDLSTNAI 171 (448)
Q Consensus 131 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~~ 171 (448)
+..+++|++|.++.| ++.+.++.-...+|+|++++++.|++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 334444555555544 23322222223334444444444444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.83 E-value=0.00048 Score=36.15 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=15.6
Q ss_pred CCCEEeCcCCcccccCchhhhcC
Q 038011 423 SVMVLMLSSNNFSGHVPKSISNL 445 (448)
Q Consensus 423 ~L~~L~l~~n~i~~~~p~~~~~l 445 (448)
+|++||+++|+|+ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677788888877 777777654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=0.00021 Score=71.48 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=26.7
Q ss_pred CCCCCCEEEccCcc-CCCCCccccC-CCCCCCeEecccCc-cccc-cchhccCCCCCCEEEcccCc
Q 038011 181 GLKNLEQLILNGNS-IQGQIPAEIG-NLTNLHKLLLLQNE-FSGG-IPLSLLQLRELETLDLRRNS 242 (448)
Q Consensus 181 ~l~~L~~L~l~~n~-i~~~~~~~l~-~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~ 242 (448)
.+++|+.++++.+. +++..-..+. .+++|++|.+.++. +++. +......++.|++|+++.|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34455555555544 3322222222 24555555544444 3321 11222345556666665544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00033 Score=70.16 Aligned_cols=62 Identities=26% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCCCEEEcccCc-CCCCCCcccc-CCCCCCEEEcccCc-Ccccc-hhhhhCCCCCcEEeccCCcc
Q 038011 230 LRELETLDLRRNS-LSGEIPNDIG-ILANMTTLALSNNA-LTGAI-PQSIRDMTKLVTLRLDSNVL 291 (448)
Q Consensus 230 l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~l~~n~l 291 (448)
+.+|+.++++.+. +++..-..+. .+++|++|.+..+. +++.. ......++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555555554 3322212222 24556666655544 33221 22233455566666665544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00021 Score=63.14 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEE
Q 038011 183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLA 261 (448)
Q Consensus 183 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ 261 (448)
.+.+.|+..++.++++ .....|+.|+.|.|+-|.++.. ..+..|++|++|+|..|.+.... -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555422 2334555556666665555532 22455555555555555544211 11233445555555
Q ss_pred cccCc
Q 038011 262 LSNNA 266 (448)
Q Consensus 262 l~~n~ 266 (448)
+..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00029 Score=62.27 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccC-ChhhcCCCCCCEEECc
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSL-PPRLFESRNLSVLVLS 406 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~ 406 (448)
+.+.|++.+|.+.++ .....++.|+.|.+|-|.|+..- ..-....|++|.|..|.|.+.. -..+.++++|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 455666666666532 34566777888888888777332 2333344778888887776311 1355677888888888
Q ss_pred CCcccccCccc-----ccCCCCCCEEe
Q 038011 407 RNNFSGELPET-----MGQSTSVMVLM 428 (448)
Q Consensus 407 ~n~l~~~~~~~-----~~~l~~L~~L~ 428 (448)
.|+-.|.-+.. +.-+|+|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 88766654433 34467777764
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0063 Score=31.82 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=10.4
Q ss_pred CCEEECcCCcccccCccccc
Q 038011 400 LSVLVLSRNNFSGELPETMG 419 (448)
Q Consensus 400 L~~L~L~~n~l~~~~~~~~~ 419 (448)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666555 4554443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.76 E-value=0.00023 Score=70.02 Aligned_cols=85 Identities=29% Similarity=0.311 Sum_probs=43.8
Q ss_pred cccEEEccCCcCcCC----cchhhhcCCC-CCEEeCCCCcccccc----CcccCCC--cccEEEccCCcccccC----Ch
Q 038011 328 MLTELSLRSCSVRGP----MPLWLSNQTE-LAFLDLSENELEGTY----PQWLAEP--NLGTVILSDNMLTGSL----PP 392 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~ls~n~~~~~~----~~~~~~~--~L~~L~L~~n~l~~~~----~~ 392 (448)
++++|.+++|.++.. ....+...+. +..+++.+|.+.+.. ...+..+ .+++++++.|.+++.. ..
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 555566666555421 2223344444 555666666665331 1112222 3666677777666432 33
Q ss_pred hhcCCCCCCEEECcCCcccc
Q 038011 393 RLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 393 ~~~~~~~L~~L~L~~n~l~~ 412 (448)
.+..+++++.+.+++|++.+
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhhhHHHHHhhcccCcccc
Confidence 44445667777777776654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.68 E-value=0.018 Score=27.91 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=5.7
Q ss_pred CCCEEeCcCCccc
Q 038011 423 SVMVLMLSSNNFS 435 (448)
Q Consensus 423 ~L~~L~l~~n~i~ 435 (448)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555566665555
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.91 E-value=0.0003 Score=69.24 Aligned_cols=182 Identities=25% Similarity=0.257 Sum_probs=108.7
Q ss_pred CCCEEEcccCCCCCccch----hccCCCCCCEEEccCccCCCCCc----cccCCC-CCCCeEecccCccccc----cchh
Q 038011 160 YLEFLDLSTNAIGGKLSS----SVAGLKNLEQLILNGNSIQGQIP----AEIGNL-TNLHKLLLLQNEFSGG----IPLS 226 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l-~~L~~L~l~~n~~~~~----~~~~ 226 (448)
.+.++.+.+|.+...... .+...+.|+.|++++|.+.+.-. ..+... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 478888999988654333 34667889999999998874222 222232 4567777777777642 3344
Q ss_pred ccCCCCCCEEEcccCcCCC----CCCccc----cCCCCCCEEEcccCcCcccc----hhhhhCCCC-CcEEeccCCcccc
Q 038011 227 LLQLRELETLDLRRNSLSG----EIPNDI----GILANMTTLALSNNALTGAI----PQSIRDMTK-LVTLRLDSNVLAG 293 (448)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~----~~~~~~----~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~l~~n~l~~ 293 (448)
+.....++.++++.|.+.. .++..+ ....++++|++++|.++... ...+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556778888888887631 112222 23567777888777766321 123333444 5667777777654
Q ss_pred cc----chhhhCC-CCCCEEEccCCcCCCCCCccc----CCCccccEEEccCCcCcC
Q 038011 294 EI----PTWLFDL-HDMKSLFLGGNKLKWNNNVSI----VPKCMLTELSLRSCSVRG 341 (448)
Q Consensus 294 ~~----~~~l~~~-~~L~~L~L~~n~l~~~~~~~~----~~~~~L~~L~l~~n~~~~ 341 (448)
.. .+.+..+ +.++.++++.|.+++.+...+ .....++++.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 2223334 566777777777776554322 233367777777776654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.22 E-value=0.0018 Score=55.85 Aligned_cols=93 Identities=26% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011 125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204 (448)
Q Consensus 125 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~ 204 (448)
++|...+..+.+.+.||++.|++. ..-..|..++.|..|+++.|.+. ..|..+.....+..+++..|..+ ..|.++.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 344344555566666666666654 23334555556666666666654 45556666566666666666655 5666666
Q ss_pred CCCCCCeEecccCccc
Q 038011 205 NLTNLHKLLLLQNEFS 220 (448)
Q Consensus 205 ~l~~L~~L~l~~n~~~ 220 (448)
..+.++++++..+.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 6677777666666654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.49 E-value=0.18 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=14.1
Q ss_pred CCCCCEEeCcCCcccccCchh
Q 038011 421 STSVMVLMLSSNNFSGHVPKS 441 (448)
Q Consensus 421 l~~L~~L~l~~n~i~~~~p~~ 441 (448)
+++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777888888877 66654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.49 E-value=0.18 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=14.1
Q ss_pred CCCCCEEeCcCCcccccCchh
Q 038011 421 STSVMVLMLSSNNFSGHVPKS 441 (448)
Q Consensus 421 l~~L~~L~l~~n~i~~~~p~~ 441 (448)
+++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777888888877 66654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.38 E-value=0.068 Score=28.47 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=7.8
Q ss_pred CCCCEEeCcCCcccccC
Q 038011 422 TSVMVLMLSSNNFSGHV 438 (448)
Q Consensus 422 ~~L~~L~l~~n~i~~~~ 438 (448)
++|+.|+|++|+|++.-
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 44555555555555433
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.47 E-value=0.048 Score=46.33 Aligned_cols=81 Identities=22% Similarity=0.129 Sum_probs=46.5
Q ss_pred CCcEEeccCCccccccchhhhCCCCCCEEEccCCcCC-CCCCcccC-CCccccEEEccCC-cCcCCcchhhhcCCCCCEE
Q 038011 280 KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK-WNNNVSIV-PKCMLTELSLRSC-SVRGPMPLWLSNQTELAFL 356 (448)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L 356 (448)
.++.++-++..+..+..+.+..++.++.|.+.+++-- +.....+. ...+|+.|++++| .|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666665555555566666666666655421 11111111 2336777777776 4665555667777888877
Q ss_pred eCCC
Q 038011 357 DLSE 360 (448)
Q Consensus 357 ~ls~ 360 (448)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7755
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.04 E-value=0.0091 Score=51.64 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=42.4
Q ss_pred cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEe
Q 038011 349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLM 428 (448)
Q Consensus 349 ~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 428 (448)
.....+.||++.|++......+-....+..|+++.|++. ..|..++....+..+++.+|..+ -.|.++...+++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 334445555555544322221111222455555555554 45555555555555555555555 4555555566666666
Q ss_pred CcCCccc
Q 038011 429 LSSNNFS 435 (448)
Q Consensus 429 l~~n~i~ 435 (448)
+.+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6655554
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.96 E-value=0.33 Score=26.32 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=9.9
Q ss_pred CCCCEEECCCCCCCCCCCcc
Q 038011 110 RSLMTLDLSYNAMKGEIPRT 129 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~ 129 (448)
++|+.|+|++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.96 E-value=0.33 Score=26.32 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=9.9
Q ss_pred CCCCEEECCCCCCCCCCCcc
Q 038011 110 RSLMTLDLSYNAMKGEIPRT 129 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~ 129 (448)
++|+.|+|++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=0.093 Score=44.64 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNA 121 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 121 (448)
.|..+|-++ ..+..+--+.+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsd-----s~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASD-----SSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCC-----chHHHHHHHHHhccchhhhheecccc
Confidence 566666666 56666555666666666666666654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.82 E-value=0.51 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=13.9
Q ss_pred CCCCEEeCcCCcccccCch
Q 038011 422 TSVMVLMLSSNNFSGHVPK 440 (448)
Q Consensus 422 ~~L~~L~l~~n~i~~~~p~ 440 (448)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36778888888888 7775
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.48 E-value=15 Score=35.92 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=51.3
Q ss_pred cccEEEccCCcCcCCcch--hhhcCCCCCEEeCCCCccccc-cCccc-------CC-Cc-ccEEEccCCcccccCC---h
Q 038011 328 MLTELSLRSCSVRGPMPL--WLSNQTELAFLDLSENELEGT-YPQWL-------AE-PN-LGTVILSDNMLTGSLP---P 392 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~ls~n~~~~~-~~~~~-------~~-~~-L~~L~L~~n~l~~~~~---~ 392 (448)
.+++|....|...+.... .+..-+..+.+++....-... .+... .. -. +..+.++.++.....- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 567777777766543322 233445566666654332110 01100 00 11 6677777777663222 2
Q ss_pred hhcCCCCCCEEECcCCcccc----cCcccccCCCCCCEEeCcCCc
Q 038011 393 RLFESRNLSVLVLSRNNFSG----ELPETMGQSTSVMVLMLSSNN 433 (448)
Q Consensus 393 ~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~ 433 (448)
....-+.+..|++++|.... .+|.....-.+++.+-.+.|.
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 22334667778888876543 233333333344444444443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.64 E-value=23 Score=34.68 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=10.5
Q ss_pred CCCCEEeCCCCccCccCCc
Q 038011 135 TKLVYLDLNNNNLNGSIPS 153 (448)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~~ 153 (448)
+.+++++++.|.+....|.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 4556666666665544443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.66 E-value=4.5 Score=22.02 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=11.3
Q ss_pred CCCCCEEeCcCCccc
Q 038011 421 STSVMVLMLSSNNFS 435 (448)
Q Consensus 421 l~~L~~L~l~~n~i~ 435 (448)
+.+|+.|++++|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888886
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.46 E-value=4.2 Score=22.48 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=10.8
Q ss_pred CCCCEEeCcCCccc
Q 038011 422 TSVMVLMLSSNNFS 435 (448)
Q Consensus 422 ~~L~~L~l~~n~i~ 435 (448)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888876
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.40 E-value=12 Score=37.36 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=6.6
Q ss_pred cccEEEccCCcCc
Q 038011 328 MLTELSLRSCSVR 340 (448)
Q Consensus 328 ~L~~L~l~~n~~~ 340 (448)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3455555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.65 E-value=12 Score=37.33 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=21.5
Q ss_pred cCCCCCEEeCCCC--ccccccCc--ccCCCcccEEEccCCccccc
Q 038011 349 NQTELAFLDLSEN--ELEGTYPQ--WLAEPNLGTVILSDNMLTGS 389 (448)
Q Consensus 349 ~~~~L~~L~ls~n--~~~~~~~~--~~~~~~L~~L~L~~n~l~~~ 389 (448)
..|+|..|+|++| .+. ..++ .+....|++|.+.||++...
T Consensus 242 ~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence 3466677777766 322 1111 12234477777777776643
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.69 E-value=13 Score=19.87 Aligned_cols=12 Identities=42% Similarity=0.274 Sum_probs=6.4
Q ss_pred CCCCEEECcCCc
Q 038011 398 RNLSVLVLSRNN 409 (448)
Q Consensus 398 ~~L~~L~L~~n~ 409 (448)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 94
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.46 E-value=19 Score=26.86 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhcc
Q 038011 5 SLLLATLLLSFSILKST 21 (448)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (448)
+++++++|+++++.++.
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555555544444433
No 95
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=35.99 E-value=49 Score=21.49 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHHHHHhhccCC
Q 038011 1 MTNLSLLLATLLLSFSILKSTCL 23 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (448)
|+++.++.|++++.+-+.+-...
T Consensus 1 MRTL~LLaAlLLlAlqaQAepl~ 23 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQAEPLQ 23 (52)
T ss_pred CcHHHHHHHHHHHHHHHhccccc
Confidence 77777777877776665554443
No 96
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=28.70 E-value=48 Score=21.99 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHHHHhhccCC
Q 038011 1 MTNLSLLLATLLLSFSILKSTCL 23 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (448)
|++.++.+|++-+.++...+++.
T Consensus 1 MA~Kl~vialLC~aLva~vQ~AP 23 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAP 23 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCc
Confidence 77888777666555555444443
No 97
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=26.43 E-value=76 Score=22.66 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHhhccC
Q 038011 1 MTNLSLLLATLLLSFSILKSTC 22 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (448)
|.+-+|++.++.+.++++.++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 7888888888777776666555
No 98
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=24.36 E-value=1e+02 Score=18.30 Aligned_cols=14 Identities=57% Similarity=0.662 Sum_probs=7.8
Q ss_pred CchhHHHHHHHHHH
Q 038011 1 MTNLSLLLATLLLS 14 (448)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (448)
||.+.+.+++.++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 77776644444443
No 99
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=23.09 E-value=39 Score=23.71 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=4.5
Q ss_pred CCCCccc
Q 038011 63 SSDCCHW 69 (448)
Q Consensus 63 ~~~~c~w 69 (448)
+.+||.|
T Consensus 61 ~~~CC~~ 67 (75)
T PF02950_consen 61 NSECCSG 67 (75)
T ss_dssp TTCBSSS
T ss_pred CCCCCCC
Confidence 3467776
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.08 E-value=69 Score=38.85 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCccccCCCCCCCEEeCCCCccC
Q 038011 116 DLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLN 148 (448)
Q Consensus 116 ~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 148 (448)
||++|+|. .++...|..+++|++|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Done!