Query 038011
Match_columns 448
No_of_seqs 463 out of 4580
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-52 8.7E-57 438.0 32.2 403 22-448 6-540 (768)
2 4eco_A Uncharacterized protein 100.0 5E-51 1.7E-55 419.0 27.5 405 26-448 28-568 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.1E-48 7.2E-53 406.6 29.7 392 24-448 265-808 (876)
4 3rgz_A Protein brassinosteroid 100.0 4.8E-47 1.6E-51 398.0 27.1 337 110-447 294-705 (768)
5 3t6q_A CD180 antigen; protein- 100.0 2E-41 6.8E-46 347.2 34.6 365 77-448 29-502 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-42 1.3E-46 352.5 27.7 372 67-446 18-544 (606)
7 3v47_A TOLL-like receptor 5B a 100.0 7.6E-42 2.6E-46 338.1 28.8 355 80-439 29-412 (455)
8 3t6q_A CD180 antigen; protein- 100.0 1.2E-40 4.1E-45 341.4 34.3 362 80-448 56-526 (606)
9 4eco_A Uncharacterized protein 100.0 2.4E-42 8.1E-47 354.6 20.7 337 97-442 194-585 (636)
10 2z63_A TOLL-like receptor 4, v 100.0 6.5E-41 2.2E-45 340.9 27.4 156 67-228 14-170 (570)
11 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-41 3.6E-46 319.7 18.3 275 24-317 2-282 (313)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1E-40 3.6E-45 337.8 24.5 353 79-447 24-498 (549)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-39 4E-44 338.5 32.8 160 79-244 23-184 (680)
14 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-40 1.8E-44 336.5 29.0 362 70-439 45-562 (606)
15 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.9E-44 321.8 27.9 338 110-448 30-397 (455)
16 4ecn_A Leucine-rich repeat pro 100.0 3.2E-40 1.1E-44 344.9 22.0 330 102-441 440-824 (876)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-39 3.8E-44 345.5 25.5 289 68-365 15-376 (844)
18 2z63_A TOLL-like receptor 4, v 100.0 1.7E-38 5.9E-43 323.0 29.8 353 79-439 50-535 (570)
19 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-38 2E-42 325.7 33.0 189 81-275 49-292 (680)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-38 4.1E-43 320.6 26.3 341 81-438 21-484 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-38 1.6E-42 316.3 30.2 344 84-448 3-470 (520)
22 3o6n_A APL1; leucine-rich repe 100.0 2.9E-38 9.9E-43 306.0 25.9 351 57-437 3-354 (390)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-38 2.3E-42 317.8 29.3 344 79-439 50-514 (562)
24 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-38 9.1E-43 335.0 25.3 359 79-445 46-549 (844)
25 2id5_A Lingo-1, leucine rich r 100.0 6.6E-37 2.2E-41 304.5 30.6 302 110-412 32-334 (477)
26 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-37 1.3E-41 311.7 27.8 346 78-439 47-514 (549)
27 3oja_B Anopheles plasmodium-re 100.0 2.2E-37 7.4E-42 315.9 25.2 312 108-437 49-360 (597)
28 2id5_A Lingo-1, leucine rich r 100.0 6.3E-37 2.2E-41 304.6 26.7 334 78-418 29-363 (477)
29 1o6v_A Internalin A; bacterial 100.0 9.7E-36 3.3E-40 295.0 34.1 321 82-436 69-389 (466)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-36 1.1E-40 305.6 29.4 344 84-448 34-499 (562)
31 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-36 2.1E-40 308.0 31.3 364 76-445 47-565 (635)
32 4fmz_A Internalin; leucine ric 100.0 4E-35 1.4E-39 279.5 31.5 307 106-435 40-346 (347)
33 1o6v_A Internalin A; bacterial 100.0 4.5E-34 1.5E-38 283.0 33.2 331 82-448 47-377 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-34 5.8E-39 284.2 29.5 324 82-443 43-395 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 5.4E-34 1.9E-38 276.0 25.3 310 81-413 45-354 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-33 5.2E-38 277.4 28.4 306 101-436 33-353 (457)
37 4fmz_A Internalin; leucine ric 100.0 7.6E-33 2.6E-37 263.7 31.0 301 82-411 45-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.7E-33 9.4E-38 285.6 26.7 335 56-413 8-360 (597)
39 4g8a_A TOLL-like receptor 4; l 100.0 1E-32 3.5E-37 283.9 29.8 338 110-448 52-544 (635)
40 1jl5_A Outer protein YOPM; leu 100.0 4.8E-34 1.6E-38 280.7 17.3 322 82-445 35-421 (454)
41 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-34 2.1E-38 266.9 16.3 252 159-436 50-306 (313)
42 4fcg_A Uncharacterized protein 100.0 2.5E-34 8.7E-39 271.1 13.0 274 24-317 23-315 (328)
43 1xku_A Decorin; proteoglycan, 100.0 5.4E-32 1.9E-36 255.9 27.7 274 136-433 53-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-32 1E-36 257.9 25.7 288 111-433 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-32 1.1E-36 257.8 25.5 294 82-409 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 6.9E-32 2.4E-36 255.2 27.3 278 136-447 32-320 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-35 4.2E-40 294.1 -1.3 182 231-412 199-412 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.6E-39 286.6 1.4 351 81-437 3-413 (461)
49 1jl5_A Outer protein YOPM; leu 100.0 1.8E-31 6.1E-36 262.4 18.4 315 81-440 11-354 (454)
50 2z80_A TOLL-like receptor 2, v 100.0 4.1E-30 1.4E-34 245.3 19.3 288 107-439 28-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 4.6E-30 1.6E-34 240.1 18.9 230 110-341 28-262 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.7E-34 242.4 19.7 285 71-390 27-317 (353)
53 2z66_A Variable lymphocyte rec 100.0 3.5E-29 1.2E-33 234.0 18.9 279 113-420 10-296 (306)
54 1ozn_A Reticulon 4 receptor; N 100.0 5.3E-29 1.8E-33 230.4 19.7 180 136-315 33-213 (285)
55 3zyj_A Leucine-rich repeat-con 100.0 3E-28 1E-32 239.4 20.1 228 110-340 64-292 (440)
56 3zyi_A Leucine-rich repeat-con 100.0 3E-28 1E-32 240.2 20.1 229 110-341 75-304 (452)
57 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.5E-32 235.6 24.4 248 112-365 56-304 (452)
58 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 5.9E-32 234.0 24.7 246 114-365 47-293 (440)
59 3g06_A SSPH2 (leucine-rich rep 100.0 7.2E-27 2.5E-31 236.6 29.1 295 56-419 11-305 (622)
60 1ozn_A Reticulon 4 receptor; N 100.0 4.4E-28 1.5E-32 224.2 18.4 208 109-317 31-239 (285)
61 4fcg_A Uncharacterized protein 100.0 7.7E-28 2.6E-32 226.7 20.1 236 108-364 79-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 100.0 2.3E-26 8E-31 232.9 26.9 263 83-395 42-305 (622)
63 3o53_A Protein LRIM1, AGAP0063 100.0 6.4E-29 2.2E-33 233.3 7.2 264 139-416 14-281 (317)
64 1wwl_A Monocyte differentiatio 99.9 8.2E-29 2.8E-33 232.0 7.3 201 230-436 94-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-28 7.5E-33 229.7 9.8 266 161-439 12-280 (317)
66 1wwl_A Monocyte differentiatio 99.9 4.2E-29 1.4E-33 234.0 3.6 251 130-412 38-310 (312)
67 2o6q_A Variable lymphocyte rec 99.9 2E-26 6.8E-31 211.2 20.2 216 64-291 2-217 (270)
68 3oja_A Leucine-rich immune mol 99.9 1.5E-26 5.2E-31 229.4 14.5 225 184-445 35-261 (487)
69 3ogk_B Coronatine-insensitive 99.9 1.3E-28 4.5E-33 251.3 -0.6 303 133-437 162-528 (592)
70 3oja_A Leucine-rich immune mol 99.9 9.1E-27 3.1E-31 231.1 11.0 233 160-406 35-270 (487)
71 3ogk_B Coronatine-insensitive 99.9 7.9E-28 2.7E-32 245.6 2.8 324 107-432 161-548 (592)
72 2z62_A TOLL-like receptor 4, v 99.9 6.7E-25 2.3E-29 201.8 21.4 224 115-367 12-240 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 8.3E-25 2.8E-29 201.2 20.1 207 184-414 29-240 (276)
74 2o6q_A Variable lymphocyte rec 99.9 9.1E-24 3.1E-28 193.5 23.4 203 111-317 17-219 (270)
75 3rfs_A Internalin B, repeat mo 99.9 1E-24 3.4E-29 200.0 14.6 207 205-446 39-246 (272)
76 3goz_A Leucine-rich repeat-con 99.9 2.2E-25 7.4E-30 213.2 9.0 253 163-415 2-301 (362)
77 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.6E-28 193.0 21.5 205 105-317 5-209 (290)
78 2p1m_B Transport inhibitor res 99.9 6E-27 2E-31 239.1 -2.4 347 82-436 106-520 (594)
79 3rfs_A Internalin B, repeat mo 99.9 1.7E-24 5.9E-29 198.5 14.3 222 114-349 23-244 (272)
80 2ast_B S-phase kinase-associat 99.9 5.8E-26 2E-30 215.0 3.5 236 64-313 34-282 (336)
81 3goz_A Leucine-rich repeat-con 99.9 1E-25 3.6E-30 215.4 5.1 224 114-338 2-264 (362)
82 2ca6_A RAN GTPase-activating p 99.9 4E-25 1.4E-29 213.4 4.9 245 175-438 24-319 (386)
83 2ca6_A RAN GTPase-activating p 99.9 1.6E-25 5.6E-30 216.1 2.1 188 180-367 91-319 (386)
84 2ast_B S-phase kinase-associat 99.9 1.7E-24 5.7E-29 205.0 8.6 255 110-395 47-314 (336)
85 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4.3E-27 187.6 20.2 204 155-365 6-209 (290)
86 3m19_A Variable lymphocyte rec 99.9 9.5E-23 3.2E-27 184.6 19.0 190 65-268 3-192 (251)
87 2p1m_B Transport inhibitor res 99.9 1.1E-25 3.6E-30 229.9 -1.4 331 106-439 101-498 (594)
88 4glp_A Monocyte differentiatio 99.9 6.1E-23 2.1E-27 191.9 14.5 201 231-436 91-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5.2E-27 181.8 15.2 200 208-433 32-237 (239)
90 1h6u_A Internalin H; cell adhe 99.9 4.9E-22 1.7E-26 185.4 18.4 196 107-319 38-233 (308)
91 4glp_A Monocyte differentiatio 99.9 1E-22 3.5E-27 190.4 13.2 200 160-364 92-307 (310)
92 2xwt_C Thyrotropin receptor; s 99.9 2.2E-22 7.5E-27 180.8 14.8 196 111-313 32-236 (239)
93 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 176.0 19.4 178 111-292 15-192 (251)
94 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.4E-26 182.6 18.0 195 203-412 37-231 (308)
95 2o6s_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 166.8 15.7 162 110-279 28-189 (208)
96 2o6s_A Variable lymphocyte rec 99.8 2E-20 7E-25 164.2 16.6 181 113-304 10-190 (208)
97 3cvr_A Invasion plasmid antige 99.8 1.9E-20 6.4E-25 187.5 17.4 186 208-420 60-252 (571)
98 4ay9_X Follicle-stimulating ho 99.8 3.1E-20 1.1E-24 176.5 17.8 221 136-361 31-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5.1E-25 188.2 13.3 207 58-302 34-253 (571)
100 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6E-24 171.3 18.5 240 138-384 12-256 (350)
101 3e6j_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 157.1 17.7 163 58-244 10-172 (229)
102 1h6t_A Internalin B; cell adhe 99.8 3.1E-19 1E-23 165.0 15.8 173 132-318 43-215 (291)
103 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.8E-23 161.2 15.6 173 106-293 42-214 (291)
104 1m9s_A Internalin B; cell inva 99.8 8.7E-19 3E-23 177.3 15.8 172 133-318 41-212 (605)
105 2v9t_B SLIT homolog 2 protein 99.8 2.4E-18 8.4E-23 152.1 16.5 133 135-267 32-164 (220)
106 2xot_A Amphoterin-induced prot 99.8 1.2E-18 4.2E-23 166.2 14.9 177 113-293 21-203 (361)
107 2xot_A Amphoterin-induced prot 99.8 1.9E-18 6.6E-23 164.8 16.2 176 85-269 22-203 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 5.5E-18 1.9E-22 149.8 16.8 151 114-268 15-166 (220)
109 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5.3E-23 175.5 14.9 174 106-294 39-212 (605)
110 2v9t_B SLIT homolog 2 protein 99.8 4E-18 1.4E-22 150.7 15.5 152 138-292 14-165 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-18 1.5E-22 150.5 15.6 153 138-293 14-167 (220)
112 3e6j_A Variable lymphocyte rec 99.8 1.5E-17 5.2E-22 148.0 17.8 153 112-269 21-173 (229)
113 4ezg_A Putative uncharacterize 99.8 5.8E-18 2E-22 147.1 12.8 130 133-268 42-172 (197)
114 4ezg_A Putative uncharacterize 99.8 3.6E-18 1.2E-22 148.4 11.1 153 107-268 41-194 (197)
115 4b8c_D Glucose-repressible alc 99.7 1.8E-19 6.3E-24 186.7 -0.0 261 25-316 129-404 (727)
116 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 153.5 8.8 168 206-387 18-185 (263)
117 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.1E-22 150.7 10.2 171 229-413 17-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 9.2E-20 3.1E-24 183.3 -7.2 209 204-429 346-567 (567)
119 1dce_A Protein (RAB geranylger 99.7 7.1E-19 2.4E-23 176.9 -4.5 181 252-439 346-550 (567)
120 3sb4_A Hypothetical leucine ri 99.7 2.5E-17 8.5E-22 155.1 6.2 261 109-380 48-327 (329)
121 4fdw_A Leucine rich hypothetic 99.7 4.5E-15 1.5E-19 142.8 21.3 266 108-387 111-383 (401)
122 2ell_A Acidic leucine-rich nuc 99.7 4.1E-16 1.4E-20 131.7 12.1 134 108-244 22-160 (168)
123 1w8a_A SLIT protein; signaling 99.7 7.9E-16 2.7E-20 132.9 13.8 128 113-244 11-139 (192)
124 2je0_A Acidic leucine-rich nuc 99.7 3.8E-16 1.3E-20 129.1 10.1 128 109-239 16-148 (149)
125 3sb4_A Hypothetical leucine ri 99.6 5.5E-16 1.9E-20 145.8 12.1 284 108-428 23-327 (329)
126 2ell_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 131.0 10.6 109 134-244 23-133 (168)
127 4b8c_D Glucose-repressible alc 99.6 4.7E-17 1.6E-21 168.6 4.9 191 110-313 173-369 (727)
128 1w8a_A SLIT protein; signaling 99.6 1.6E-15 5.3E-20 131.0 13.5 130 138-270 11-141 (192)
129 2je0_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 127.8 8.8 109 134-244 16-126 (149)
130 4fdw_A Leucine rich hypothetic 99.6 2.5E-14 8.4E-19 137.7 21.3 268 132-411 110-383 (401)
131 2wfh_A SLIT homolog 2 protein 99.6 7.3E-15 2.5E-19 126.8 14.2 125 114-243 14-138 (193)
132 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 123.3 14.5 86 135-220 28-113 (177)
133 4fs7_A Uncharacterized protein 99.6 7E-14 2.4E-18 134.8 20.4 325 102-446 63-388 (394)
134 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.8E-19 124.5 14.1 127 138-268 13-139 (193)
135 2o6r_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 121.1 14.7 131 137-270 9-139 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-14 3.8E-19 123.8 9.9 132 105-243 14-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 3.1E-16 1.1E-20 136.2 -4.3 152 278-435 17-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.1E-14 2.4E-18 118.8 9.6 62 131-196 15-77 (176)
139 4fs7_A Uncharacterized protein 99.5 2E-12 6.8E-17 124.6 20.8 307 125-448 61-368 (394)
140 1ds9_A Outer arm dynein; leuci 99.5 2.6E-16 9E-21 136.7 -6.9 86 154-244 43-128 (198)
141 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 110.4 12.5 104 113-220 12-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 109.2 12.6 104 113-220 15-118 (174)
143 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 108.7 12.1 105 137-244 11-115 (170)
144 4gt6_A Cell surface protein; l 99.4 5.2E-11 1.8E-15 114.7 22.6 318 103-435 56-391 (394)
145 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 134.9 0.0 185 231-435 72-283 (372)
146 2r9u_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 107.7 11.9 104 138-244 15-118 (174)
147 3un9_A NLR family member X1; l 99.4 7E-14 2.4E-18 133.2 0.4 164 280-443 73-260 (372)
148 4gt6_A Cell surface protein; l 99.3 9.4E-11 3.2E-15 112.8 21.3 301 97-411 74-391 (394)
149 2ifg_A High affinity nerve gro 99.2 8.7E-11 3E-15 111.1 11.9 92 102-196 24-116 (347)
150 2ifg_A High affinity nerve gro 99.2 1.2E-10 4.1E-15 110.1 11.0 104 114-221 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 7.8E-09 2.7E-13 98.8 23.0 300 107-421 43-355 (379)
152 4h09_A Hypothetical leucine ri 99.1 4.6E-09 1.6E-13 100.4 20.8 297 82-398 47-356 (379)
153 2ra8_A Uncharacterized protein 99.1 2.9E-10 9.8E-15 107.4 8.4 137 297-436 166-321 (362)
154 2ra8_A Uncharacterized protein 99.0 1E-09 3.6E-14 103.5 8.3 138 177-317 166-321 (362)
155 3rw6_A Nuclear RNA export fact 98.6 3.1E-10 1.1E-14 101.7 -7.0 80 156-237 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5.2E-13 86.3 2.8 121 295-435 28-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.5 5.1E-08 1.7E-12 83.0 3.7 19 346-364 146-164 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4.1E-11 78.4 5.8 82 276-358 167-258 (267)
159 3e4g_A ATP synthase subunit S, 98.2 8.2E-07 2.8E-11 73.8 3.2 84 328-411 62-153 (176)
160 3e4g_A ATP synthase subunit S, 98.1 2.5E-06 8.4E-11 70.9 5.0 82 232-313 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 4.2E-05 1.4E-09 64.7 3.2 119 297-435 35-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 5.7E-05 2E-09 63.9 3.6 19 345-363 151-169 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0037 1.3E-07 49.1 6.4 57 354-411 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0067 2.3E-07 47.6 6.4 33 137-169 33-65 (130)
165 2lz0_A Uncharacterized protein 67.8 15 0.0005 26.7 6.2 43 125-168 10-52 (100)
166 2lz0_A Uncharacterized protein 51.2 45 0.0015 24.0 6.3 36 178-214 15-50 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-52 Score=438.01 Aligned_cols=403 Identities=31% Similarity=0.434 Sum_probs=218.4
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccc
Q 038011 22 CLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSD 101 (448)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~ 101 (448)
+..+.++|++||++||+++. |+. .+.+|..+++||.|+||+|+ .+ +|+.+++++ ..+.|.
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~----------~l~~W~~~~~~C~w~gv~C~-~~---~v~~L~L~~-----~~l~g~ 65 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN----------LLPDWSSNKNPCTFDGVTCR-DD---KVTSIDLSS-----KPLNVG 65 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT----------SSTTCCTTSCGGGSTTEEEE-TT---EEEEEECTT-----SCCCEE
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc----------cccCCCCCCCCcCCcceEEC-CC---cEEEEECCC-----CCcCCc
Confidence 33457889999999999997 654 37899988899999999998 33 999999987 455443
Q ss_pred ---cc-----------------------hhhcCCCCCCEEECCCCCCCCCCCcc--ccCCCCCCCEEeCCCCccCccCCc
Q 038011 102 ---VL-----------------------KLIFRIRSLMTLDLSYNAMKGEIPRT--GFANLTKLVYLDLNNNNLNGSIPS 153 (448)
Q Consensus 102 ---~~-----------------------~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 153 (448)
++ +.+..+++|++|++++|.+.+.+| . .+.++++|++|++++|.+.+..|.
T Consensus 66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 22 345566666666666666665555 3 455555666666665555544443
Q ss_pred cc-cCCCCCCEEEcccCCC-------------------------------------------------CCccchhccCCC
Q 038011 154 QL-FSLRYLEFLDLSTNAI-------------------------------------------------GGKLSSSVAGLK 183 (448)
Q Consensus 154 ~~-~~l~~L~~L~L~~n~~-------------------------------------------------~~~~~~~~~~l~ 183 (448)
.+ .++++|++|++++|.+ .+..|. +++++
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 32 3334444444444333 322222 33444
Q ss_pred CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCC-CCCCEEEc
Q 038011 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL-ANMTTLAL 262 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l 262 (448)
+|++|++++|.+++.+|..+.++++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..+... ++|++|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 4444444444444444444444444444444444333322211 22233333333333333344444332 55666666
Q ss_pred ccCcCcccchhhhhCCCCCcEEeccCCccccccchh-hhCCCCCCEEEccCCcCC-------------------------
Q 038011 263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTW-LFDLHDMKSLFLGGNKLK------------------------- 316 (448)
Q Consensus 263 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~------------------------- 316 (448)
++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 666555555555555555555555555555444433 444444555554444443
Q ss_pred CCC--------------------------CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc
Q 038011 317 WNN--------------------------NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW 370 (448)
Q Consensus 317 ~~~--------------------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 370 (448)
+.. ...+..+.+|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 111 111112224444444444444444444455555555555555555444444
Q ss_pred cCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011 371 LAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 371 ~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l 448 (448)
+.. ++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++++++|
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 432 336666666666666666666666666666666666666666666666666666666666666666666665543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-51 Score=418.99 Aligned_cols=405 Identities=21% Similarity=0.221 Sum_probs=334.8
Q ss_pred hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccc---eeEEeCCCCCcceEEEEeCCCCCCCCCCccccc
Q 038011 26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHW---EMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDV 102 (448)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w---~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~ 102 (448)
...|+.||.++++++.++.|.... ...+...+|+.+.+||.| .||+|+..+ +|+.++|++ +.+.|.+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~---~V~~L~L~~-----~~l~g~l 97 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQG--FGTQPGANWNFNKELDMWGAQPGVSLNSNG---RVTGLSLEG-----FGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC--------CCCCCSSCGGGTTCCTTEEECTTC---CEEEEECTT-----SCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccCC--cCCccCCCCCCCCCcccccCCCCeEEcCCC---CEEEEEecC-----cccCCcC
Confidence 346899999999999866554211 112234589998999999 999998664 999999999 9999999
Q ss_pred chhhcCCCCCCEEECCCCCC------------------------------------------------------------
Q 038011 103 LKLIFRIRSLMTLDLSYNAM------------------------------------------------------------ 122 (448)
Q Consensus 103 ~~~~~~l~~L~~L~L~~n~~------------------------------------------------------------ 122 (448)
|+.++++++|++|++++|.+
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 99999999999999998843
Q ss_pred ------------------CCCCCccccCCCCCCCEEeCCCCccCcc-----------------CCcccc--CCCCCCEEE
Q 038011 123 ------------------KGEIPRTGFANLTKLVYLDLNNNNLNGS-----------------IPSQLF--SLRYLEFLD 165 (448)
Q Consensus 123 ------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~ 165 (448)
++ +| ..+.++++|++|++++|.+++. +|..++ ++++|++|+
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 23 66 5688999999999999999975 899999 999999999
Q ss_pred cccCCCCCccchhccCCCCCCEEEccCcc-CCC-CCccccCCC------CCCCeEecccCccccccch--hccCCCCCCE
Q 038011 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQG-QIPAEIGNL------TNLHKLLLLQNEFSGGIPL--SLLQLRELET 235 (448)
Q Consensus 166 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~ 235 (448)
+++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+..+++|++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 99999999999999999999999999998 887 788888776 89999999999999 7887 8999999999
Q ss_pred EEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCC-CcEEeccCCccccccchhhhCCC--CCCEEEccC
Q 038011 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK-LVTLRLDSNVLAGEIPTWLFDLH--DMKSLFLGG 312 (448)
Q Consensus 236 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~L~~ 312 (448)
|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 9999999998888 8888999999999999998 77778888888 999999999998 6777766654 899999999
Q ss_pred CcCCCCCCcccC-------CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC--------ccc
Q 038011 313 NKLKWNNNVSIV-------PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP--------NLG 377 (448)
Q Consensus 313 n~l~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~--------~L~ 377 (448)
|.+.+..+..++ ...+|++|++++|.+++..+..+..+++|+.|++++|.++...+..+... +|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 998876655566 55588999999998886555566778888888888888883333333322 688
Q ss_pred EEEccCCcccccCChhhc--CCCCCCEEECcCCcccccCcccccCCCCCCEEeC------cCCcccccCchhhhcCCCC
Q 038011 378 TVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLML------SSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 378 ~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~n~i~~~~p~~~~~l~~l 448 (448)
+|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+++++.|
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 8888888888 6777776 77888888888888886 7777888888888888 4577777888887777654
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-48 Score=406.59 Aligned_cols=392 Identities=22% Similarity=0.230 Sum_probs=320.6
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCC-----CC--ccc------------eeEEeCCCCCcceEE
Q 038011 24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSS-----DC--CHW------------EMVRCFSRGSSKEVT 84 (448)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~v~c~~~~~~~~v~ 84 (448)
.+..+|++||++||+++. ++ +|+.+. ++ |.| .||+|+..+ +|+
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~---~V~ 326 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG---RVT 326 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTS---CEE
T ss_pred ccchHHHHHHHHHHHHcC-CC--------------CCCcCCCcccccCCccccccccccccccCcCceEecCCC---CEE
Confidence 355689999999999987 32 354332 55 999 999998743 999
Q ss_pred EEeCCCCCCCCCCcccccchhhcCCCCCCEEEC-CCCCCCCC--------------------------------------
Q 038011 85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL-SYNAMKGE-------------------------------------- 125 (448)
Q Consensus 85 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~-------------------------------------- 125 (448)
.++|++ +.+.|.+|+.++++++|+.|+| ++|.+.|.
T Consensus 327 ~L~Ls~-----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 327 GLSLAG-----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp EEECTT-----TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred EEECcc-----CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 999999 9999999999999999999999 66643322
Q ss_pred --------------------------------------CCccccCCCCCCCEEeCCCCccCc-----------------c
Q 038011 126 --------------------------------------IPRTGFANLTKLVYLDLNNNNLNG-----------------S 150 (448)
Q Consensus 126 --------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~ 150 (448)
+| ..+.++++|++|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchh-HHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 66 568899999999999999997 3
Q ss_pred CCcccc--CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc-CCC-CCccccCCC-------CCCCeEecccCcc
Q 038011 151 IPSQLF--SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQG-QIPAEIGNL-------TNLHKLLLLQNEF 219 (448)
Q Consensus 151 ~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l-------~~L~~L~l~~n~~ 219 (448)
+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.++ ++|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888888 99999999999999999999999999999999999998 887 678766554 4999999999999
Q ss_pred ccccch--hccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCC-CcEEeccCCccccccc
Q 038011 220 SGGIPL--SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK-LVTLRLDSNVLAGEIP 296 (448)
Q Consensus 220 ~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~ 296 (448)
+ .+|. .+..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 9 7888 8999999999999999998 777 8899999999999999999 78888888998 999999999998 678
Q ss_pred hhhhCCC--CCCEEEccCCcCCCCCCcccC------CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccC
Q 038011 297 TWLFDLH--DMKSLFLGGNKLKWNNNVSIV------PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP 368 (448)
Q Consensus 297 ~~l~~~~--~L~~L~L~~n~l~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 368 (448)
..+...+ +|+.|++++|.+.+... .++ ...+|+.|++++|.+....+..+..+++|+.|++++|.++ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 7776654 49999999999876422 111 2237888999988888544444567888888888888887 444
Q ss_pred c-ccCCC--------cccEEEccCCcccccCChhhc--CCCCCCEEECcCCcccccCcccccCCCCCCEEeCcC------
Q 038011 369 Q-WLAEP--------NLGTVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSS------ 431 (448)
Q Consensus 369 ~-~~~~~--------~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~------ 431 (448)
. .+... +|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 3 33322 6888888888888 6777776 77888888888888885 677777888888888865
Q ss_pred CcccccCchhhhcCCCC
Q 038011 432 NNFSGHVPKSISNLTLI 448 (448)
Q Consensus 432 n~i~~~~p~~~~~l~~l 448 (448)
|++.+.+|..|++++.|
T Consensus 792 N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSL 808 (876)
T ss_dssp CBCCCCCCTTGGGCSSC
T ss_pred ccccccChHHHhcCCCC
Confidence 77777888877777654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-47 Score=398.01 Aligned_cols=337 Identities=35% Similarity=0.493 Sum_probs=162.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcc-ccCCCCCCEEEcccCCCCCccchhccCCC-CCCE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQ-LFSLRYLEFLDLSTNAIGGKLSSSVAGLK-NLEQ 187 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~ 187 (448)
++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.+|..+..++ +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 344444444443333333 33333444444444444433333322 33344444444444433333333333332 3333
Q ss_pred EEccCccCCCCCccccCC--CCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 188 LILNGNSIQGQIPAEIGN--LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 188 L~l~~n~i~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
|++++|.+++..|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 333333333333333322 344555555555554445555555555555555555555555555555555555555555
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 345 (448)
.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+..+..+..+.+|++|++++|++.+.+|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 55555555555555555555555555555555555555555555555555543333344444555555555555555555
Q ss_pred hhhcCCCCCEEeCCCCccccccCcccCC----------------------------------------------------
Q 038011 346 WLSNQTELAFLDLSENELEGTYPQWLAE---------------------------------------------------- 373 (448)
Q Consensus 346 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~---------------------------------------------------- 373 (448)
.+..+++|+.|++++|.++|.+|..+..
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 5555555555555555555444432110
Q ss_pred -------------------CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcc
Q 038011 374 -------------------PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434 (448)
Q Consensus 374 -------------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 434 (448)
.+|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 1244555555555555555555555555555555555555555555555555555555555
Q ss_pred cccCchhhhcCCC
Q 038011 435 SGHVPKSISNLTL 447 (448)
Q Consensus 435 ~~~~p~~~~~l~~ 447 (448)
+|.+|..++++++
T Consensus 693 ~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 693 DGRIPQAMSALTM 705 (768)
T ss_dssp EECCCGGGGGCCC
T ss_pred cCcCChHHhCCCC
Confidence 5555555555443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-41 Score=347.16 Aligned_cols=365 Identities=19% Similarity=0.155 Sum_probs=239.4
Q ss_pred CCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 038011 77 RGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF 156 (448)
Q Consensus 77 ~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 156 (448)
.+.+..++.+++++ +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+..|..|+
T Consensus 29 ~~l~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 29 GTLPNSTECLEFSF-----NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp TTSCTTCCEEECTT-----CCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCCCCcCcEEEccC-----CccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhc
Confidence 34456789999998 88888888889999999999999999884444 7889999999999999999888888888
Q ss_pred CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCC--
Q 038011 157 SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE-- 234 (448)
Q Consensus 157 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-- 234 (448)
++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999999988876677788888888888888888753333344477777777777777655555555555555
Q ss_pred EEEcccCcCCCCC-------------------------------------------------------------------
Q 038011 235 TLDLRRNSLSGEI------------------------------------------------------------------- 247 (448)
Q Consensus 235 ~L~l~~n~l~~~~------------------------------------------------------------------- 247 (448)
.|++++|.+++..
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 4444444333211
Q ss_pred --------CccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh-------------------
Q 038011 248 --------PNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF------------------- 300 (448)
Q Consensus 248 --------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------------------- 300 (448)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 122334445555555555544 3344444445555555555544443333444
Q ss_pred ------CCCCCCEEEccCCcCCCCC--CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc-c
Q 038011 301 ------DLHDMKSLFLGGNKLKWNN--NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW-L 371 (448)
Q Consensus 301 ------~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~ 371 (448)
.+++|++|++++|.+.+.. ...+..+.+|++|++++|.+.+..|..+..+++|+.|++++|.+++..+.. +
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 4444444444444444332 223344445666666666665555566666666666666666666544332 3
Q ss_pred C-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc---CcccccCCCCCCEEeCcCCcccccCchhhhcCCC
Q 038011 372 A-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE---LPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447 (448)
Q Consensus 372 ~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~ 447 (448)
. .++|++|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..|++++.
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 2 24477777777777766666677777777777777777652 2245677777888888888877777777776655
Q ss_pred C
Q 038011 448 I 448 (448)
Q Consensus 448 l 448 (448)
|
T Consensus 502 L 502 (606)
T 3t6q_A 502 M 502 (606)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-42 Score=352.53 Aligned_cols=372 Identities=22% Similarity=0.166 Sum_probs=260.2
Q ss_pred ccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 038011 67 CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN 146 (448)
Q Consensus 67 c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~ 146 (448)
|++.+.+..+.+.+.+++.+++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.
T Consensus 18 c~~~~l~~ip~~~~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 18 CMDQKLSKVPDDIPSSTKNIDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp CTTSCCSSCCTTSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred ccCCCcccCCCCCCCCcCEEECCC-----CCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCc
Confidence 444444444555567899999999 8898888889999999999999999998 5544789999999999999999
Q ss_pred cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccch
Q 038011 147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPL 225 (448)
Q Consensus 147 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 225 (448)
+.+..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|++++..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 998889999999999999999999987777889999999999999999986 5689999999999999999998876555
Q ss_pred hccCCC---------------------------CCCEEEcccCcCC----------------------------------
Q 038011 226 SLLQLR---------------------------ELETLDLRRNSLS---------------------------------- 244 (448)
Q Consensus 226 ~l~~l~---------------------------~L~~L~l~~n~l~---------------------------------- 244 (448)
.++.++ +|+.|++++|.+.
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 443322 2333333333221
Q ss_pred --------------------------------------------------------------------CCCCc-------
Q 038011 245 --------------------------------------------------------------------GEIPN------- 249 (448)
Q Consensus 245 --------------------------------------------------------------------~~~~~------- 249 (448)
+.+|.
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~ 331 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCC
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccc
Confidence 01110
Q ss_pred -------------cccCCCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011 250 -------------DIGILANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314 (448)
Q Consensus 250 -------------~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 314 (448)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 011223334444444443322 13444455555555555555442 33445555666666666666
Q ss_pred CCCCCC-cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc-cCcccCC-CcccEEEccCCcccccCC
Q 038011 315 LKWNNN-VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT-YPQWLAE-PNLGTVILSDNMLTGSLP 391 (448)
Q Consensus 315 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~-~~L~~L~L~~n~l~~~~~ 391 (448)
+.+... ..+..+.+|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+.. ++|++|++++|++++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 555433 3445555777777777777766666777777777777777777663 4554443 447777777777776667
Q ss_pred hhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011 392 PRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446 (448)
Q Consensus 392 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~ 446 (448)
..+..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 77777777777777777777777777777777777777777777 6776666553
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-42 Score=338.13 Aligned_cols=355 Identities=22% Similarity=0.192 Sum_probs=310.5
Q ss_pred cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 038011 80 SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLR 159 (448)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 159 (448)
+.+++.+++++ +.+.+..+..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+.+..|..|.+++
T Consensus 29 ~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 29 PAHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CTTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 45799999999 8999888999999999999999999998788768899999999999999999988899999999
Q ss_pred CCCEEEcccCCCCCccchh--ccCCCCCCEEEccCccCCCCCccc-cCCCCCCCeEecccCccccccchhccCC--CCCC
Q 038011 160 YLEFLDLSTNAIGGKLSSS--VAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFSGGIPLSLLQL--RELE 234 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~ 234 (448)
+|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999999998765555 899999999999999999877776 8899999999999999998888777765 7899
Q ss_pred EEEcccCcCCCCCCcc--------ccCCCCCCEEEcccCcCcccchhhhhCC---CCCcEEeccCCcccccc--------
Q 038011 235 TLDLRRNSLSGEIPND--------IGILANMTTLALSNNALTGAIPQSIRDM---TKLVTLRLDSNVLAGEI-------- 295 (448)
Q Consensus 235 ~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~-------- 295 (448)
.+++++|.+.+..+.. +..+++|++|++++|.+++..+..+... ++|+.|++++|...+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 9999999988654433 2356889999999999998888777654 78999999988654321
Q ss_pred --chhhh--CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCccc
Q 038011 296 --PTWLF--DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL 371 (448)
Q Consensus 296 --~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 371 (448)
+..+. ..++|++|++++|.+.+.....+....+|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 11122 24789999999999998777778888899999999999998888899999999999999999998877777
Q ss_pred CC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCc
Q 038011 372 AE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP 439 (448)
Q Consensus 372 ~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p 439 (448)
.. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 65 559999999999998889999999999999999999997777778999999999999999999888
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-40 Score=341.36 Aligned_cols=362 Identities=20% Similarity=0.146 Sum_probs=249.5
Q ss_pred cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 038011 80 SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLR 159 (448)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 159 (448)
..+++.+++++ +.+.+..|..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+..+..+.+++
T Consensus 56 l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 56 LINLTFLDLTR-----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp CTTCSEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred CccceEEECCC-----CccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccCCcchhccCC
Confidence 34566777776 66666666666666677777776666663333 5566666666666666666654455566666
Q ss_pred CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCC---------------------------------
Q 038011 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNL--------------------------------- 206 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--------------------------------- 206 (448)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 66666666666554332333335555555555555443333333333
Q ss_pred --------------------------------------------------------------------CCCCeEecccCc
Q 038011 207 --------------------------------------------------------------------TNLHKLLLLQNE 218 (448)
Q Consensus 207 --------------------------------------------------------------------~~L~~L~l~~n~ 218 (448)
++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 344444444444
Q ss_pred cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccch-hhhhCCCCCcEEeccCCcccccc--
Q 038011 219 FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGEI-- 295 (448)
Q Consensus 219 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~-- 295 (448)
++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence 43 233344444444444444444443334444444555555555554443332 23566777777777777776544
Q ss_pred chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc-hhhhcCCCCCEEeCCCCccccccCcccCC-
Q 038011 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP-LWLSNQTELAFLDLSENELEGTYPQWLAE- 373 (448)
Q Consensus 296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~- 373 (448)
+..+..+++|++|++++|.+.+.....+....+|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 6678899999999999999988777778888899999999999987655 45899999999999999999888877664
Q ss_pred CcccEEEccCCccccc---CChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011 374 PNLGTVILSDNMLTGS---LPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 374 ~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l 448 (448)
++|++|++++|++++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 5599999999999863 33578889999999999999998889999999999999999999999999999988764
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-42 Score=354.58 Aligned_cols=337 Identities=20% Similarity=0.279 Sum_probs=265.3
Q ss_pred CcccccchhhcCCCCCCEEECCCCCCCCC-----------------CCccccC--CCCCCCEEeCCCCccCccCCccccC
Q 038011 97 NVTSDVLKLIFRIRSLMTLDLSYNAMKGE-----------------IPRTGFA--NLTKLVYLDLNNNNLNGSIPSQLFS 157 (448)
Q Consensus 97 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~ 157 (448)
.+.+ +|+.+.++++|++|++++|.+++. +| ..+. ++++|++|++++|.+.+.+|..+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 4456 788899999999999999999975 88 7788 9999999999999999999999999
Q ss_pred CCCCCEEEcccCC-CCC-ccchhccCC------CCCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccchhc
Q 038011 158 LRYLEFLDLSTNA-IGG-KLSSSVAGL------KNLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPLSL 227 (448)
Q Consensus 158 l~~L~~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l 227 (448)
+++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+.++++|++|++++|.++|.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 9999999999998 887 788888776 89999999999999 7888 89999999999999999998788 78
Q ss_pred cCCCCCCEEEcccCcCCCCCCccccCCCC-CCEEEcccCcCcccchhhhhCCC--CCcEEeccCCccccccchhhh----
Q 038011 228 LQLRELETLDLRRNSLSGEIPNDIGILAN-MTTLALSNNALTGAIPQSIRDMT--KLVTLRLDSNVLAGEIPTWLF---- 300 (448)
Q Consensus 228 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~---- 300 (448)
..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.... +|++|++++|.+++..|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 88888888888888887 67777878887 888888888887 5666665543 788888888888777776666
Q ss_pred ---CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCC-------CCCEEeCCCCccccccCcc
Q 038011 301 ---DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT-------ELAFLDLSENELEGTYPQW 370 (448)
Q Consensus 301 ---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~ls~n~~~~~~~~~ 370 (448)
.+++|++|++++|.+...+...+....+|++|++++|.++...+..+.... +|+.|++++|.++ .+|..
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 667778888888877765555455556777777777777733333333222 7777777777777 45544
Q ss_pred c---CCCcccEEEccCCcccccCChhhcCCCCCCEEEC------cCCcccccCcccccCCCCCCEEeCcCCcccccCchh
Q 038011 371 L---AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVL------SRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441 (448)
Q Consensus 371 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 441 (448)
+ ..++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 4 34557777777777775 7777777777777777 45666777777777777777777777777 467765
Q ss_pred h
Q 038011 442 I 442 (448)
Q Consensus 442 ~ 442 (448)
+
T Consensus 585 ~ 585 (636)
T 4eco_A 585 I 585 (636)
T ss_dssp C
T ss_pred H
Confidence 4
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=340.87 Aligned_cols=156 Identities=24% Similarity=0.216 Sum_probs=118.8
Q ss_pred ccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 038011 67 CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN 146 (448)
Q Consensus 67 c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~ 146 (448)
|...+.+-.+...+.+++.+++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 14 CMELNFYKIPDNLPFSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp CCSSCCSSCCSSSCSSCCEEECCS-----CCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred eCCCCccccCCCccccccEEEccC-----CccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCc
Confidence 333344333444455788889988 8888877788888888999999988887 5554778888889999998888
Q ss_pred cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccch
Q 038011 147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPL 225 (448)
Q Consensus 147 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 225 (448)
+.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 887777788888888888888888876555568888888888888888875 3678888888888888888877654444
Q ss_pred hcc
Q 038011 226 SLL 228 (448)
Q Consensus 226 ~l~ 228 (448)
.+.
T Consensus 168 ~~~ 170 (570)
T 2z63_A 168 DLR 170 (570)
T ss_dssp GGH
T ss_pred Hcc
Confidence 333
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-41 Score=319.70 Aligned_cols=275 Identities=31% Similarity=0.475 Sum_probs=239.2
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCcc--ceeEEeCCCCCcceEEEEeCCCCCCCCCCccc-
Q 038011 24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTS- 100 (448)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~- 100 (448)
.|.++|++||++||+++. |+. .+.+|..+.+||. |.||+|.......+|+.+++++ +.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~----------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc----------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCC
Confidence 589999999999999986 543 3688988889998 9999998654334899999999 88888
Q ss_pred -ccchhhcCCCCCCEEECCC-CCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011 101 -DVLKLIFRIRSLMTLDLSY-NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS 178 (448)
Q Consensus 101 -~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 178 (448)
.+|+.+.++++|++|++++ |.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 8899999999999999995 88887888 77899999999999999998888999999999999999999998888888
Q ss_pred ccCCCCCCEEEccCccCCCCCccccCCCC-CCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC
Q 038011 179 VAGLKNLEQLILNGNSIQGQIPAEIGNLT-NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM 257 (448)
Q Consensus 179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 257 (448)
+..+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..++ |+.|++++|.+++..+..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 99999999999999999888888888887 899999999999888888888887 9999999998888888888888899
Q ss_pred CEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
++|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 9999999988866554 7778888888888888888888888888888888888887764
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-40 Score=337.85 Aligned_cols=353 Identities=22% Similarity=0.253 Sum_probs=225.0
Q ss_pred CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011 79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158 (448)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 158 (448)
...+++.+++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+.+..+..|+++
T Consensus 24 ~~~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 24 LTAAMKSLDLSF-----NKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCTTCCEEECCS-----SCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCCccEEECcC-----CccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 345799999999 8888888889999999999999999998 4444789999999999999999997777779999
Q ss_pred CCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccCccccccchhccC-------
Q 038011 159 RYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIPLSLLQ------- 229 (448)
Q Consensus 159 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~------- 229 (448)
++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 999999999999876 356778999999999999998443444 67888999999999999988777766654
Q ss_pred -----------------CCCCCEEEcccCcCCCCC--Cc-cccCCC----------------------------------
Q 038011 230 -----------------LRELETLDLRRNSLSGEI--PN-DIGILA---------------------------------- 255 (448)
Q Consensus 230 -----------------l~~L~~L~l~~n~l~~~~--~~-~~~~~~---------------------------------- 255 (448)
+++|++|++++|.+++.. +. ....++
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 456666666666655421 00 001111
Q ss_pred -----------------------------------------------------CCCEEEcccCcCcccchhhh-hCCCCC
Q 038011 256 -----------------------------------------------------NMTTLALSNNALTGAIPQSI-RDMTKL 281 (448)
Q Consensus 256 -----------------------------------------------------~L~~L~l~~n~l~~~~~~~~-~~~~~L 281 (448)
+|++|++++|.+. .+|..+ ..+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence 2233333333332 122222 345556
Q ss_pred cEEeccCCccccccch---hhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEE
Q 038011 282 VTLRLDSNVLAGEIPT---WLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFL 356 (448)
Q Consensus 282 ~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 356 (448)
++|++++|.+++.+|. .+..+++|++|++++|.+++.+. ..+..+.+|++|++++|+++ .+|..+..+++|++|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 6666666655544332 24455556666666665554321 12334445666666666555 344455555556666
Q ss_pred eCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 357 DLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 357 ~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
++++|.+++. +... .++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++
T Consensus 416 ~Ls~N~l~~l-~~~~-~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 416 NLSSTGIRVV-KTCI-PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp ECTTSCCSCC-CTTS-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred ECCCCCcccc-cchh-cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 6665555422 2111 123455555555444321 24566666666666666 4554 3456666666666666666
Q ss_pred cCchhhhcCCC
Q 038011 437 HVPKSISNLTL 447 (448)
Q Consensus 437 ~~p~~~~~l~~ 447 (448)
..|..+.+++.
T Consensus 488 ~~~~~~~~l~~ 498 (549)
T 2z81_A 488 VPDGIFDRLTS 498 (549)
T ss_dssp CCTTGGGGCTT
T ss_pred cCHHHHhcCcc
Confidence 55555655544
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-39 Score=338.48 Aligned_cols=160 Identities=24% Similarity=0.235 Sum_probs=97.8
Q ss_pred CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011 79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158 (448)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 158 (448)
.+.+++.+++++ +.+.+..+..|.++++|++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..|.++
T Consensus 23 ~~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 23 LPTNITVLNLTH-----NQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp SCTTCSEEECCS-----SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCCcEEECCC-----CCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccC
Confidence 344677777777 66666666666777777777777776663333 556666677777777666664444456666
Q ss_pred CCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc--CCCCCCEE
Q 038011 159 RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL--QLRELETL 236 (448)
Q Consensus 159 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L 236 (448)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|+.|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 6667777666666655555666666666666666666655556666666666666666665544333322 23444444
Q ss_pred EcccCcCC
Q 038011 237 DLRRNSLS 244 (448)
Q Consensus 237 ~l~~n~l~ 244 (448)
++++|.++
T Consensus 177 ~L~~n~l~ 184 (680)
T 1ziw_A 177 ELSSNQIK 184 (680)
T ss_dssp ECTTCCCC
T ss_pred ECCCCccc
Confidence 44444443
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-40 Score=336.55 Aligned_cols=362 Identities=23% Similarity=0.196 Sum_probs=296.7
Q ss_pred eeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCc
Q 038011 70 EMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG 149 (448)
Q Consensus 70 ~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 149 (448)
.++.-.......+++.+++++ +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+
T Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~ 118 (606)
T 3vq2_A 45 KILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLAS 118 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCC
T ss_pred CEeChhhccCCccCcEEeCCC-----CcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCcccc
Confidence 333332334455899999998 88888888899999999999999999984445 889999999999999999987
Q ss_pred cCCccccCCCCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCC---------------------
Q 038011 150 SIPSQLFSLRYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT--------------------- 207 (448)
Q Consensus 150 ~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--------------------- 207 (448)
..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+..+..++
T Consensus 119 ~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 777889999999999999999876 5688999999999999999988765554332221
Q ss_pred ------CCCeEecccCccc-------------------------------------------------------------
Q 038011 208 ------NLHKLLLLQNEFS------------------------------------------------------------- 220 (448)
Q Consensus 208 ------~L~~L~l~~n~~~------------------------------------------------------------- 220 (448)
+|++|++++|.+.
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence 3344444443221
Q ss_pred -----------------------------------------cccc--------------------hhccCCCCCCEEEcc
Q 038011 221 -----------------------------------------GGIP--------------------LSLLQLRELETLDLR 239 (448)
Q Consensus 221 -----------------------------------------~~~~--------------------~~l~~l~~L~~L~l~ 239 (448)
+.+| ..+..+++|+.|+++
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 358 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECC
T ss_pred cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECc
Confidence 1111 012245567777777
Q ss_pred cCcCCCC--CCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccc-hhhhCCCCCCEEEccCCcCC
Q 038011 240 RNSLSGE--IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP-TWLFDLHDMKSLFLGGNKLK 316 (448)
Q Consensus 240 ~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~ 316 (448)
+|.+++. .+..+..+++|++|++++|.+++ .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 7776644 36778899999999999999885 55788999999999999999998777 68889999999999999999
Q ss_pred CCCCcccCCCccccEEEccCCcCcC-CcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhh
Q 038011 317 WNNNVSIVPKCMLTELSLRSCSVRG-PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL 394 (448)
Q Consensus 317 ~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 394 (448)
+.....+....+|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..+.. ++|++|++++|++++..|..+
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 8777778888899999999999987 47888999999999999999999888877765 559999999999998889999
Q ss_pred cCCCCCCEEECcCCcccccCcccccCCC-CCCEEeCcCCcccccCc
Q 038011 395 FESRNLSVLVLSRNNFSGELPETMGQST-SVMVLMLSSNNFSGHVP 439 (448)
Q Consensus 395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~p 439 (448)
..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|
T Consensus 518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999 7888788887 69999999999997554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=321.83 Aligned_cols=338 Identities=23% Similarity=0.223 Sum_probs=290.2
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEEcccCCCCCccchhccCCCCCCEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSI-PSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL 188 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 188 (448)
++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 689999999999984445 78999999999999999987544 6679999999999999999998889999999999999
Q ss_pred EccCccCCCCCccc--cCCCCCCCeEecccCccccccchh-ccCCCCCCEEEcccCcCCCCCCccccCC--CCCCEEEcc
Q 038011 189 ILNGNSIQGQIPAE--IGNLTNLHKLLLLQNEFSGGIPLS-LLQLRELETLDLRRNSLSGEIPNDIGIL--ANMTTLALS 263 (448)
Q Consensus 189 ~l~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~ 263 (448)
++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+ .+++.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755554 889999999999999999876765 7899999999999999998888777765 789999999
Q ss_pred cCcCcccchhh--------hhCCCCCcEEeccCCccccccchhhhCC---CCCCEEEccCCcCCCCCC----------cc
Q 038011 264 NNALTGAIPQS--------IRDMTKLVTLRLDSNVLAGEIPTWLFDL---HDMKSLFLGGNKLKWNNN----------VS 322 (448)
Q Consensus 264 ~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~L~~n~l~~~~~----------~~ 322 (448)
+|.+.+..+.. +..+++|++|++++|.+++..+..+... ++|+.|++++|...+... ..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99998654433 2356889999999999998888777654 899999999986554221 11
Q ss_pred cCC--CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCC
Q 038011 323 IVP--KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRN 399 (448)
Q Consensus 323 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~ 399 (448)
+.. ..+|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 111 247999999999999999999999999999999999999888877755 55999999999999877889999999
Q ss_pred CCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011 400 LSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 400 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l 448 (448)
|++|++++|++++..|..+..+++|++|++++|++++..|..|.++++|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 9999999999998889999999999999999999996555556776654
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-40 Score=344.89 Aligned_cols=330 Identities=19% Similarity=0.259 Sum_probs=233.9
Q ss_pred cchhhcCCCCCCEEECCCCCCCC-----------------CCCccccC--CCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011 102 VLKLIFRIRSLMTLDLSYNAMKG-----------------EIPRTGFA--NLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162 (448)
Q Consensus 102 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 162 (448)
+|+.+.++++|+.|+|++|.+++ .+| ..+. ++++|++|++++|.+.+.+|..+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 78889999999999999999997 288 6666 999999999999999999999999999999
Q ss_pred EEEcccCC-CCC-ccchhccCC-------CCCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccchhccCCC
Q 038011 163 FLDLSTNA-IGG-KLSSSVAGL-------KNLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPLSLLQLR 231 (448)
Q Consensus 163 ~L~L~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 231 (448)
+|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 99999998 887 778766554 49999999999999 7888 8999999999999999998 677 788899
Q ss_pred CCCEEEcccCcCCCCCCccccCCCC-CCEEEcccCcCcccchhhhhCCCC--CcEEeccCCccccccchhh---h--CCC
Q 038011 232 ELETLDLRRNSLSGEIPNDIGILAN-MTTLALSNNALTGAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWL---F--DLH 303 (448)
Q Consensus 232 ~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~l---~--~~~ 303 (448)
+|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+. |+.|++++|.+++.+|... . .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999988 77878888888 999999999888 56666655433 7777777777765443211 1 233
Q ss_pred CCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc--------CCCCCEEeCCCCccccccCccc---C
Q 038011 304 DMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN--------QTELAFLDLSENELEGTYPQWL---A 372 (448)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~ls~n~~~~~~~~~~---~ 372 (448)
+|+.|++++|.+...+...+..+.+|+.|++++|.+. .+|..+.. +++|+.|++++|+++ .+|..+ .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 5666666666665444333334445566666666555 23322211 125666666666555 334333 2
Q ss_pred CCcccEEEccCCcccccCChhhcCCCCCCEEECcC------CcccccCcccccCCCCCCEEeCcCCcccccCchh
Q 038011 373 EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR------NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441 (448)
Q Consensus 373 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 441 (448)
.++|+.|++++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 3446666666666554 555555556666665544 445555555555566666666666665 355554
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=345.51 Aligned_cols=289 Identities=20% Similarity=0.164 Sum_probs=225.9
Q ss_pred cceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCcc
Q 038011 68 HWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNL 147 (448)
Q Consensus 68 ~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 147 (448)
.|..|.+ .+.+++.++|++ +.+.+..+..|.++++|++|++++|...+.++...|.++++|++|++++|.+
T Consensus 15 ~L~~vP~----lp~~l~~LdLs~-----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 15 NLTQVPQ----VLNTTERLLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CSSCCCS----SCTTCCEEEEES-----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCC----CCCCcCEEECCC-----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 3444444 345899999998 8888888889999999999999999776678668899999999999999999
Q ss_pred CccCCccccCCCCCCEEEcccCCCCCccchh--ccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccCccccccc
Q 038011 148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS--VAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIP 224 (448)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 224 (448)
.+..|..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9888999999999999999999998766654 8899999999999999886544 578899999999999998876655
Q ss_pred hhccCC--CC------------------------------CCEEEcccCcCCCCCCcccc--------------------
Q 038011 225 LSLLQL--RE------------------------------LETLDLRRNSLSGEIPNDIG-------------------- 252 (448)
Q Consensus 225 ~~l~~l--~~------------------------------L~~L~l~~n~l~~~~~~~~~-------------------- 252 (448)
..+..+ ++ |+.|++++|.+++..+..+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 555433 33 55555655544433322211
Q ss_pred ----------------C--CCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011 253 ----------------I--LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314 (448)
Q Consensus 253 ----------------~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 314 (448)
. .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 1 2467777777777776667777788888888888888887777778888888888888888
Q ss_pred CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365 (448)
Q Consensus 315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 365 (448)
+.+.....+..+.+|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 887766677777788888888888887777778888888888888887764
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=323.00 Aligned_cols=353 Identities=22% Similarity=0.195 Sum_probs=235.1
Q ss_pred CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011 79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158 (448)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 158 (448)
...+++.+++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+.+..+..++++
T Consensus 50 ~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 50 SFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TCSSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred CCCCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccc
Confidence 345788888888 7777777778888888888888888887 4554778888888888888888886555568888
Q ss_pred CCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCC----CeEecccCcccccc----------
Q 038011 159 RYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL----HKLLLLQNEFSGGI---------- 223 (448)
Q Consensus 159 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L----~~L~l~~n~~~~~~---------- 223 (448)
++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++| +++++++|.+.+..
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 888888888888875 357788888888888888887765555544444444 44444444333211
Q ss_pred -----------------------------------------------------------------------chhccCCCC
Q 038011 224 -----------------------------------------------------------------------PLSLLQLRE 232 (448)
Q Consensus 224 -----------------------------------------------------------------------~~~l~~l~~ 232 (448)
+..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 122233344
Q ss_pred CCEEEcccCcCCCCCCccc------------------------------------------cCCCCCCEEEcccCcCccc
Q 038011 233 LETLDLRRNSLSGEIPNDI------------------------------------------GILANMTTLALSNNALTGA 270 (448)
Q Consensus 233 L~~L~l~~n~l~~~~~~~~------------------------------------------~~~~~L~~L~l~~n~l~~~ 270 (448)
|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.
T Consensus 284 L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp CSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence 555555444443 222222 2345555555555555533
Q ss_pred c--hhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC-cccCCCccccEEEccCCcCcCCcchhh
Q 038011 271 I--PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN-VSIVPKCMLTELSLRSCSVRGPMPLWL 347 (448)
Q Consensus 271 ~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~ 347 (448)
. +..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+... ..+..+.+|++|++++|.+.+..|..+
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 2 45556666666666666666543333 6666677777777776665433 345555677777777777777677777
Q ss_pred hcCCCCCEEeCCCCccc-cccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCC
Q 038011 348 SNQTELAFLDLSENELE-GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM 425 (448)
Q Consensus 348 ~~~~~L~~L~ls~n~~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 425 (448)
..+++|++|++++|.++ +.+|..+.. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 77777777777777776 345555543 3477777777777766677777777777777777777766666677777777
Q ss_pred EEeCcCCcccccCc
Q 038011 426 VLMLSSNNFSGHVP 439 (448)
Q Consensus 426 ~L~l~~n~i~~~~p 439 (448)
.|++++|++++..|
T Consensus 522 ~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 522 KIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEecCCcccCCCc
Confidence 77777777777666
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-38 Score=325.68 Aligned_cols=189 Identities=25% Similarity=0.325 Sum_probs=123.9
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
.+++.+++++ +.+.+..+..+.++++|++|++++|.+. .+|...|.++++|++|++++|.+.+..|..|+++++
T Consensus 49 ~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 49 SQLTSLDVGF-----NTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp TTCSEEECCS-----SCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CcCcEEECCC-----CccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 3677888887 7777777777788888888888888877 666556778888888888888877666667777888
Q ss_pred CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC--CCCCCCeEecccCccccccc--------------
Q 038011 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG--NLTNLHKLLLLQNEFSGGIP-------------- 224 (448)
Q Consensus 161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~-------------- 224 (448)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 88888888877766666777777777777777776654444332 33455555555554443332
Q ss_pred -------------------------------------hhccCCC--CCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 225 -------------------------------------LSLLQLR--ELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 225 -------------------------------------~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
..+..++ +|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence 2333332 2666666666665555555666666666666666
Q ss_pred cCcccchhhh
Q 038011 266 ALTGAIPQSI 275 (448)
Q Consensus 266 ~l~~~~~~~~ 275 (448)
.+++..+..+
T Consensus 283 ~l~~~~~~~~ 292 (680)
T 1ziw_A 283 NIQHLFSHSL 292 (680)
T ss_dssp CBSEECTTTT
T ss_pred ccCccChhhh
Confidence 6554444333
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=320.56 Aligned_cols=341 Identities=21% Similarity=0.255 Sum_probs=236.4
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
.+++.+++++ +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.++ .+|.. .+++
T Consensus 21 ~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLV-KISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred ccccEEECCC-----CcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence 4788889988 88888777888889999999999998884334 77888899999999999888 45555 7888
Q ss_pred CCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCC--CeEecccCcc--ccccchhccCC-----
Q 038011 161 LEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL--HKLLLLQNEF--SGGIPLSLLQL----- 230 (448)
Q Consensus 161 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l----- 230 (448)
|++|++++|.+++ ..|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 9999999998876 467888888889999888888764 345556666 7777777776 44444433332
Q ss_pred ------------------------------------------------------------------------------CC
Q 038011 231 ------------------------------------------------------------------------------RE 232 (448)
Q Consensus 231 ------------------------------------------------------------------------------~~ 232 (448)
++
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 25
Q ss_pred CCEEEcccCcCCCCCCccc-----cCCCCCCEEEcccCcCcccch-hhh-------------------------hCCCCC
Q 038011 233 LETLDLRRNSLSGEIPNDI-----GILANMTTLALSNNALTGAIP-QSI-------------------------RDMTKL 281 (448)
Q Consensus 233 L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~-------------------------~~~~~L 281 (448)
|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+ ..+++|
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 6677777777766666666 5666666666666555 122 111 456667
Q ss_pred cEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcch-hhhcCCCCCEEeC
Q 038011 282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMPL-WLSNQTELAFLDL 358 (448)
Q Consensus 282 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l 358 (448)
++|++++|.+++..|..+..+++|++|++++|.+.+.+. ..+..+.+|++|++++|.+.+.+|. .+..+++|+.|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 777777777776666666777777777777777765332 2345556677777777777663443 3566677777777
Q ss_pred CCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCCCCEEeCcCCccccc
Q 038011 359 SENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTSVMVLMLSSNNFSGH 437 (448)
Q Consensus 359 s~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~i~~~ 437 (448)
++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 407 s~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 407 SSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 77777665555443 45777777777777 66766667777777777777777 44443 66677777777777777754
Q ss_pred C
Q 038011 438 V 438 (448)
Q Consensus 438 ~ 438 (448)
.
T Consensus 484 c 484 (520)
T 2z7x_B 484 C 484 (520)
T ss_dssp H
T ss_pred C
Confidence 3
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=316.31 Aligned_cols=344 Identities=23% Similarity=0.232 Sum_probs=274.3
Q ss_pred EEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011 84 TGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF 163 (448)
Q Consensus 84 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 163 (448)
+.+|+++ +.+. .+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+++..|..|.++++|++
T Consensus 3 ~~l~ls~-----n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSK-----NGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTT-----SCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCC-----CCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 3678887 7776 4565554 89999999999998 555578999999999999999999888999999999999
Q ss_pred EEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC--CEEEccc
Q 038011 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL--ETLDLRR 240 (448)
Q Consensus 164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~ 240 (448)
|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++
T Consensus 74 L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 74 LDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999999998 56655 89999999999999987 478899999999999999999986 346677788 9999999
Q ss_pred CcC--CCCCCccccCCC---------------------------------------------------------------
Q 038011 241 NSL--SGEIPNDIGILA--------------------------------------------------------------- 255 (448)
Q Consensus 241 n~l--~~~~~~~~~~~~--------------------------------------------------------------- 255 (448)
|.+ .+..|..+..+.
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 988 555555554422
Q ss_pred --------------------CCCEEEcccCcCcccchhhh-----hCCCCCcEEeccCCccccccc-hh-----------
Q 038011 256 --------------------NMTTLALSNNALTGAIPQSI-----RDMTKLVTLRLDSNVLAGEIP-TW----------- 298 (448)
Q Consensus 256 --------------------~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~----------- 298 (448)
+|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 45566666666655555555 5555555555555544 122 11
Q ss_pred --------------hhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCc
Q 038011 299 --------------LFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENE 362 (448)
Q Consensus 299 --------------l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~ 362 (448)
+..+++|++|++++|.+.+.....+..+.+|++|++++|++++ .+|..+..+++|+.|++++|.
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 1567889999999999988666667777799999999999986 566788999999999999999
Q ss_pred cccccCcc-cC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCch
Q 038011 363 LEGTYPQW-LA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440 (448)
Q Consensus 363 ~~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 440 (448)
+++.+|.. +. .++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 98755543 33 35599999999999887776653 78999999999999 88888889999999999999999 6887
Q ss_pred h-hhcCCCC
Q 038011 441 S-ISNLTLI 448 (448)
Q Consensus 441 ~-~~~l~~l 448 (448)
. |.+++.|
T Consensus 462 ~~~~~l~~L 470 (520)
T 2z7x_B 462 GIFDRLTSL 470 (520)
T ss_dssp TTTTTCTTC
T ss_pred HHhccCCcc
Confidence 6 7766553
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-38 Score=306.04 Aligned_cols=351 Identities=17% Similarity=0.123 Sum_probs=280.4
Q ss_pred CCCCCCCCCCcc-ceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCC
Q 038011 57 LETWNSSSDCCH-WEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT 135 (448)
Q Consensus 57 ~~~w~~~~~~c~-w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 135 (448)
+++|..+.+||. |.+..|...+ +.+.. ..........-..+++++.|+++++.+. .+|...+.+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-------~~i~~-----~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~ 69 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-------VHIDM-----QTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 69 (390)
T ss_dssp ----CCEECBCC------EEEES-------CEECS-----SCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCC
T ss_pred cCCCCCccceehhhhhhccceee-------eeeec-----ccccccccccccccCCceEEEecCCchh-hCChhHhcccc
Confidence 567888778875 5555553211 11121 1111111112235689999999999988 78867789999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 215 (448)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+.++++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 99999999999997777899999999999999999998888889999999999999999995544557899999999999
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (448)
+|.+++..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+++. ...++|++|++++|.+...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~- 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV- 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-
Confidence 9999987788899999999999999998854 356789999999999988743 3456899999999999854
Q ss_pred chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN 375 (448)
Q Consensus 296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 375 (448)
+. ...++|++|++++|.+++.+ .+....+|++|++++|.+.+..|..+..+++|+.|++++|++++........++
T Consensus 221 ~~--~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 296 (390)
T 3o6n_A 221 RG--PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296 (390)
T ss_dssp EC--CCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTT
T ss_pred cc--cccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCC
Confidence 33 23578999999999998753 566677999999999999988899999999999999999999865444444567
Q ss_pred ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccccc
Q 038011 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGH 437 (448)
Q Consensus 376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 437 (448)
|++|++++|+++ .+|..+..+++|++|++++|++++ ++ +..+++|++|++++|++++.
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 999999999998 678888889999999999999984 43 67789999999999999854
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-38 Score=317.81 Aligned_cols=344 Identities=22% Similarity=0.260 Sum_probs=259.1
Q ss_pred CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011 79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158 (448)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 158 (448)
.+.+++.+++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.++ .+|.. .+
T Consensus 50 ~~~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 50 LPPRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp SCTTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 345788999998 8888888888999999999999999988 444377889999999999999988 56655 78
Q ss_pred CCCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCC--CeEecccCcc--ccccchhccCCC--
Q 038011 159 RYLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL--HKLLLLQNEF--SGGIPLSLLQLR-- 231 (448)
Q Consensus 159 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l~-- 231 (448)
++|++|++++|++++. .|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 8999999999998763 457888999999999999988753 34444555 9999999887 554444443322
Q ss_pred -------------------------------------------------------------------------------C
Q 038011 232 -------------------------------------------------------------------------------E 232 (448)
Q Consensus 232 -------------------------------------------------------------------------------~ 232 (448)
+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 5
Q ss_pred CCEEEcccCcCCCCCCccc-----cCCC--------------------------CCCEEEcccCcCcccchhhhhCCCCC
Q 038011 233 LETLDLRRNSLSGEIPNDI-----GILA--------------------------NMTTLALSNNALTGAIPQSIRDMTKL 281 (448)
Q Consensus 233 L~~L~l~~n~l~~~~~~~~-----~~~~--------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L 281 (448)
|++|++++|.+++.+|..+ ..++ ++++|++++|.+.... ....+++|
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L 355 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSF 355 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCc
Confidence 5566666666665555544 2222 2444444444433111 11567888
Q ss_pred cEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcc-hhhhcCCCCCEEeC
Q 038011 282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMP-LWLSNQTELAFLDL 358 (448)
Q Consensus 282 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l 358 (448)
++|++++|.+++..|..+..+++|++|++++|++++.+. ..+....+|++|++++|.+.+.+| ..+..+++|+.|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 999999999888788888888999999999998887553 345666789999999998887444 45778889999999
Q ss_pred CCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCCCCEEeCcCCccccc
Q 038011 359 SENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTSVMVLMLSSNNFSGH 437 (448)
Q Consensus 359 s~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~i~~~ 437 (448)
++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++.
T Consensus 436 ~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 436 SSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99998877665544 56999999999988 78887778899999999999998 56655 88889999999999998876
Q ss_pred Cc
Q 038011 438 VP 439 (448)
Q Consensus 438 ~p 439 (448)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=334.97 Aligned_cols=359 Identities=20% Similarity=0.201 Sum_probs=254.3
Q ss_pred CcceEEEEeCCCCCCCCCCccccc-chhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcc--c
Q 038011 79 SSKEVTGLDLSNLFPLDSNVTSDV-LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQ--L 155 (448)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~ 155 (448)
...+++.+++++ +...+.+ +..|.++++|++|+|++|.+.+..| ..|.++++|++|++++|.+.+..|.. +
T Consensus 46 ~l~~L~~LdLs~-----n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 46 FLEQLQLLELGS-----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SCCSCSEEEECT-----TCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccccCeEEeCCC-----CCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccc
Confidence 344777888887 5455444 6678888888888888888874445 77888888888888888887655554 7
Q ss_pred cCCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCC--------------------------CCC
Q 038011 156 FSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGN--------------------------LTN 208 (448)
Q Consensus 156 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--------------------------l~~ 208 (448)
.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+.. +++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 788888888888888876544 56788888888888888776555444332 222
Q ss_pred ------CCeEecccCccccccchhccC--------------------------------------CCCCCEEEcccCcCC
Q 038011 209 ------LHKLLLLQNEFSGGIPLSLLQ--------------------------------------LRELETLDLRRNSLS 244 (448)
Q Consensus 209 ------L~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~ 244 (448)
|++|++++|.+++..+..+.. .++|+.|++++|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 777777777655433332221 267999999999999
Q ss_pred CCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccC
Q 038011 245 GEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIV 324 (448)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 324 (448)
+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+...+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 88888899999999999999999988889999999999999999999988888999999999999999999988877788
Q ss_pred CCccccEEEccCCcCcCCc----------------------------------------chhhhcCCCCCEEeCCCCccc
Q 038011 325 PKCMLTELSLRSCSVRGPM----------------------------------------PLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 325 ~~~~L~~L~l~~n~~~~~~----------------------------------------~~~~~~~~~L~~L~ls~n~~~ 364 (448)
...+|++|++++|.+++.. +..+..+++|+.|++++|.++
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 8888999999888776421 122446788888888888877
Q ss_pred cccCcc--cCCCcccE-----------------------------EEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011 365 GTYPQW--LAEPNLGT-----------------------------VILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 365 ~~~~~~--~~~~~L~~-----------------------------L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 413 (448)
+..+.. ...++|++ |++++|++++..|..+..+++|+.|+|++|++++.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 533221 11122444 44444444444444444555555555555555543
Q ss_pred CcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011 414 LPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445 (448)
Q Consensus 414 ~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l 445 (448)
.+..+. ++|+.|++++|++++..|+.|.++
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred Chhhhh--ccccEEECCCCcCCCCChhHhCCc
Confidence 333332 455555555555555555544443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=304.50 Aligned_cols=302 Identities=21% Similarity=0.184 Sum_probs=227.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
++++.|++++|.+. .++...|.++++|++|++++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57888888888887 44446788888888888888888877778888888888888888888766556677888888888
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
+++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 88888877777778888888888888888877777777788888888888888876655667778888888888888877
Q ss_pred cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349 (448)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 349 (448)
..+..|..+++|++|++++|...+.++.......+|++|++++|.++..+...+..+.+|++|++++|.+.+..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 76677777888888888887776666666666667888888887777666555666667777777777777666666777
Q ss_pred CCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011 350 QTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 350 ~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 412 (448)
+++|+.|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 777777777777777666655544 347777777777775444556666777777777777664
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-37 Score=311.70 Aligned_cols=346 Identities=23% Similarity=0.267 Sum_probs=275.9
Q ss_pred CCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCc-cCCcccc
Q 038011 78 GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG-SIPSQLF 156 (448)
Q Consensus 78 ~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~ 156 (448)
....+++.+++++ +.+.+..+..|..+++|++|++++|.+. .++...+.++++|++|++++|.+.+ ..|..+.
T Consensus 47 ~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 47 RACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp SSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hcCCcccEEECCC-----CCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 3445899999999 8888888889999999999999999998 5564779999999999999999986 3567889
Q ss_pred CCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCC------------------------CCCCCe
Q 038011 157 SLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGN------------------------LTNLHK 211 (448)
Q Consensus 157 ~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~------------------------l~~L~~ 211 (448)
++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+.. +++|++
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccE
Confidence 99999999999998444444 57889999999999999988766666544 567777
Q ss_pred EecccCcccccc--ch-----------------------------hccC-------------------------------
Q 038011 212 LLLLQNEFSGGI--PL-----------------------------SLLQ------------------------------- 229 (448)
Q Consensus 212 L~l~~n~~~~~~--~~-----------------------------~l~~------------------------------- 229 (448)
|++++|++++.. +. .+..
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 777777776521 00 0011
Q ss_pred ----------------------------CCCCCEEEcccCcCCCCCCccc-cCCCCCCEEEcccCcCcccchh---hhhC
Q 038011 230 ----------------------------LRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQ---SIRD 277 (448)
Q Consensus 230 ----------------------------l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~ 277 (448)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++..+. .+..
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 123555555555554 345444 4789999999999999976643 3678
Q ss_pred CCCCcEEeccCCccccccc--hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCE
Q 038011 278 MTKLVTLRLDSNVLAGEIP--TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355 (448)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 355 (448)
+++|++|++++|.+++..+ ..+..+++|++|++++|+++..+. .+....+|++|++++|.+++. |..+ .++|+.
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~ 435 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEV 435 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccc-cchh--cCCceE
Confidence 8999999999999986432 568899999999999999986543 344566899999999998753 3322 368999
Q ss_pred EeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011 356 LDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 356 L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
|++++|++++.. ...++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 436 L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 436 LDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred EECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 999999998753 23466999999999999 7776 467899999999999999888888999999999999999999
Q ss_pred ccCc
Q 038011 436 GHVP 439 (448)
Q Consensus 436 ~~~p 439 (448)
+..|
T Consensus 511 ~~~~ 514 (549)
T 2z81_A 511 CSCP 514 (549)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 8877
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-37 Score=315.91 Aligned_cols=312 Identities=18% Similarity=0.137 Sum_probs=269.6
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
.+.+++.+++++|.+. .+|...+.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999988 778677889999999999999999888889999999999999999999888888999999999
Q ss_pred EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267 (448)
Q Consensus 188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 267 (448)
|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999966666678999999999999999988888899999999999999998864 355688999999999988
Q ss_pred cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011 268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347 (448)
Q Consensus 268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 347 (448)
++. ...++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+..+.+|++|++++|.+.+..|..+
T Consensus 205 ~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 STL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 743 3456899999999998743322 247899999999999874 356667799999999999999889999
Q ss_pred hcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEE
Q 038011 348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVL 427 (448)
Q Consensus 348 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 427 (448)
..+++|+.|++++|.+++..+.....++|+.|++++|.++ .+|..+..+++|+.|++++|++++. + +..+++|+.|
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 9999999999999999975444444567999999999999 7888888899999999999999854 3 6778999999
Q ss_pred eCcCCccccc
Q 038011 428 MLSSNNFSGH 437 (448)
Q Consensus 428 ~l~~n~i~~~ 437 (448)
++++|++++.
T Consensus 351 ~l~~N~~~~~ 360 (597)
T 3oja_B 351 TLSHNDWDCN 360 (597)
T ss_dssp ECCSSCEEHH
T ss_pred EeeCCCCCCh
Confidence 9999999864
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=304.64 Aligned_cols=334 Identities=22% Similarity=0.154 Sum_probs=268.3
Q ss_pred CCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccC
Q 038011 78 GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS 157 (448)
Q Consensus 78 ~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 157 (448)
+.+.+++.+++++ +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+....+..|.+
T Consensus 29 ~~~~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 29 GIPTETRLLDLGK-----NRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCCTTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCCCcEEECCC-----CccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCcccccC
Confidence 3455788899998 88888888889999999999999998884434 78899999999999999988666667888
Q ss_pred CCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEE
Q 038011 158 LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLD 237 (448)
Q Consensus 158 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 237 (448)
+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 99999999999998877788888999999999999998877788888999999999999998876667788899999999
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 238 LRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 238 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
+++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 99999887777788888999999999988776666666666689999999999886555678889999999999999888
Q ss_pred CCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcC
Q 038011 318 NNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFE 396 (448)
Q Consensus 318 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 396 (448)
.+...+..+.+|++|++++|++.+..|..|..+++|+.|++++|.+++..+..+.. ++|++|++++|++.......+ -
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~ 341 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-V 341 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-H
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-H
Confidence 77777888888999999999998888888889999999999999998766666654 459999999998874322111 1
Q ss_pred CCCCCEEECcCCcccccCcccc
Q 038011 397 SRNLSVLVLSRNNFSGELPETM 418 (448)
Q Consensus 397 ~~~L~~L~L~~n~l~~~~~~~~ 418 (448)
......+++.++......|..+
T Consensus 342 ~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 342 FRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp HTTTTSSCCTTCCCBEEESGGG
T ss_pred HhhhhccccCccCceeCCchHH
Confidence 1223334455554443344433
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-36 Score=294.96 Aligned_cols=321 Identities=28% Similarity=0.391 Sum_probs=239.8
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++.+++++ +.+.+..+ +..+++|++|++++|.+. .++ . +.++++|++|++++|.+.+. +. +.++++|
T Consensus 69 ~L~~L~Ls~-----n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 136 (466)
T 1o6v_A 69 NLTQINFSN-----NQLTDITP--LKNLTKLVDILMNNNQIA-DIT-P-LANLTNLTGLTLFNNQITDI-DP-LKNLTNL 136 (466)
T ss_dssp TCCEEECCS-----SCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred CCCEEECCC-----CccCCchh--hhccccCCEEECCCCccc-cCh-h-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence 566666666 55544433 666666777777766666 333 1 66666777777776666643 22 6666677
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 241 (448)
++|++++|.+.+. + .+..+++|++|+++ +.+.+. + .+.++++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 7777776666532 2 36666677777765 333322 2 377888888888888888753 34778888999999988
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011 242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321 (448)
Q Consensus 242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 321 (448)
.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.+.
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 8876544 66788899999999988754 357788899999999999886544 7888999999999999887654
Q ss_pred ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCC
Q 038011 322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLS 401 (448)
Q Consensus 322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 401 (448)
+..+.+|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ ....++|++|++++|++++. ..+..+++|+
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 6667789999999999887554 7889999999999999987665 44556699999999999854 4678899999
Q ss_pred EEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 402 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
.|++++|++++..| +..+++|+.|++++|++++
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999997776 7889999999999999986
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-36 Score=305.59 Aligned_cols=344 Identities=24% Similarity=0.248 Sum_probs=266.8
Q ss_pred EEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011 84 TGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF 163 (448)
Q Consensus 84 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 163 (448)
+.+++++ +.+.+ +|..+. +++++|++++|.+. .++...|.++++|++|++++|.+++..|..|.++++|++
T Consensus 34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 7899998 77775 555443 89999999999999 666588999999999999999999888999999999999
Q ss_pred EEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC--CEEEccc
Q 038011 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL--ETLDLRR 240 (448)
Q Consensus 164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~ 240 (448)
|++++|+++ .+|.. .+++|++|++++|++++ ..|..+.++++|++|++++|.+++. .+..+++| +.|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 999999998 55655 89999999999999986 3468999999999999999999863 34555566 9999999
Q ss_pred CcC--CCCCCccccCCC---------------------------------------------------------------
Q 038011 241 NSL--SGEIPNDIGILA--------------------------------------------------------------- 255 (448)
Q Consensus 241 n~l--~~~~~~~~~~~~--------------------------------------------------------------- 255 (448)
|.+ ++..|..+..+.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 998 666555554322
Q ss_pred ------------------CCCEEEcccCcCcccchhhh-----hCC--------------------------CCCcEEec
Q 038011 256 ------------------NMTTLALSNNALTGAIPQSI-----RDM--------------------------TKLVTLRL 286 (448)
Q Consensus 256 ------------------~L~~L~l~~n~l~~~~~~~~-----~~~--------------------------~~L~~L~l 286 (448)
+|++|++++|.+++.+|..+ ..+ .+|++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 34444444444443333322 111 12333333
Q ss_pred cCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCccc
Q 038011 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 287 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~ 364 (448)
++|.+.... ....+++|++|++++|.+.+.....+....+|++|++++|++++ ..|..+..+++|+.|++++|.++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 333332111 01578899999999999998666677777899999999999986 34567899999999999999999
Q ss_pred cccCc-ccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchh-
Q 038011 365 GTYPQ-WLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS- 441 (448)
Q Consensus 365 ~~~~~-~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~- 441 (448)
+.+|. .+. .++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 75554 343 35599999999999887776553 78999999999999 78887889999999999999999 68876
Q ss_pred hhcCCCC
Q 038011 442 ISNLTLI 448 (448)
Q Consensus 442 ~~~l~~l 448 (448)
+..++.|
T Consensus 493 ~~~l~~L 499 (562)
T 3a79_B 493 FDRLTSL 499 (562)
T ss_dssp TTTCTTC
T ss_pred HhcCCCC
Confidence 7766543
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-36 Score=307.97 Aligned_cols=364 Identities=23% Similarity=0.185 Sum_probs=247.7
Q ss_pred CCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccc
Q 038011 76 SRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL 155 (448)
Q Consensus 76 ~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 155 (448)
+.+.+..++.+||++ +.+.+..+..|.++++|++|+|++|.+. .++..+|.++++|++|+|++|.+++..+..|
T Consensus 47 P~~lp~~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CSSSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCCCcCCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 344556899999999 9999888889999999999999999998 6776889999999999999999997777789
Q ss_pred cCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC-
Q 038011 156 FSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL- 233 (448)
Q Consensus 156 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L- 233 (448)
.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 999999999999999997777789999999999999999975 467888999999999999999876555444322111
Q ss_pred ---CEEEcccCcCCCCC---------------------------------------------------------------
Q 038011 234 ---ETLDLRRNSLSGEI--------------------------------------------------------------- 247 (448)
Q Consensus 234 ---~~L~l~~n~l~~~~--------------------------------------------------------------- 247 (448)
..++++.|.+....
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 11222211110000
Q ss_pred ----------------------------------------CccccCCCCCCEEEcccCcCcccch---------------
Q 038011 248 ----------------------------------------PNDIGILANMTTLALSNNALTGAIP--------------- 272 (448)
Q Consensus 248 ----------------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~--------------- 272 (448)
...+.....++.|++.+|.+....+
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 0001122344455554443322111
Q ss_pred ----hhhhCCCCCcEEeccCCcccc--ccchhh-----------------------hCCCCCCEEEccCCcCCCC-CCcc
Q 038011 273 ----QSIRDMTKLVTLRLDSNVLAG--EIPTWL-----------------------FDLHDMKSLFLGGNKLKWN-NNVS 322 (448)
Q Consensus 273 ----~~~~~~~~L~~L~l~~n~l~~--~~~~~l-----------------------~~~~~L~~L~L~~n~l~~~-~~~~ 322 (448)
.....+++|+.+++++|.+.. ..+..+ ..+++|+.+++.++..... +...
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 111234566667766665532 122222 3344444555544433322 1223
Q ss_pred cCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc-cccCcccCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011 323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE-GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNL 400 (448)
Q Consensus 323 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 400 (448)
+....+++.+++++|.+.+..+..+..++.|+.|++++|.+. +..|..+.. ++|++|++++|++++..|..+..+++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 444456777777777777666777777777777777777643 334444443 347777777777776667777777777
Q ss_pred CEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011 401 SVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445 (448)
Q Consensus 401 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l 445 (448)
++|+|++|++++..+..+..+++|+.|+|++|+|++..|..+.++
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 777777777776666777777777777777777777667666554
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4e-35 Score=279.49 Aligned_cols=307 Identities=23% Similarity=0.303 Sum_probs=246.8
Q ss_pred hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL 185 (448)
Q Consensus 106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 185 (448)
+..+++|+.|+++++.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++.. +.+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 346678888888888887 555 377888888888888888743 33 88888888888888888643 358888889
Q ss_pred CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
++|++++|.+.+ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999998888874 333 7788889999998886654443 37888889999999888875433 778888999999998
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 345 (448)
.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.+.+. +....+|++|++++|.+++. .
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 8875433 7788899999999998875443 7788999999999998887654 66677899999999988764 4
Q ss_pred hhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCC
Q 038011 346 WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM 425 (448)
Q Consensus 346 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 425 (448)
.+..+++|+.|++++|.+++. +.....++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 688899999999999999864 544555679999999999998888889999999999999999997665 88899999
Q ss_pred EEeCcCCccc
Q 038011 426 VLMLSSNNFS 435 (448)
Q Consensus 426 ~L~l~~n~i~ 435 (448)
+|++++|+|+
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999986
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-34 Score=283.02 Aligned_cols=331 Identities=29% Similarity=0.353 Sum_probs=280.8
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++.+++++ +.+.. ++ .+..+++|++|++++|.+. .++ . +.++++|++|++++|.+.+..+ +.++++|
T Consensus 47 ~l~~L~l~~-----~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 114 (466)
T 1o6v_A 47 QVTTLQADR-----LGIKS-ID-GVEYLNNLTQINFSNNQLT-DIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNL 114 (466)
T ss_dssp TCCEEECCS-----SCCCC-CT-TGGGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred cccEEecCC-----CCCcc-Cc-chhhhcCCCEEECCCCccC-Cch-h-hhccccCCEEECCCCccccChh--hcCCCCC
Confidence 788999987 55544 33 4788999999999999998 555 3 9999999999999999985544 9999999
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 241 (448)
++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+.. .+..+++|+.|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 999999999986543 8999999999999999985 44 58899999999997 4554332 3889999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011 242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321 (448)
Q Consensus 242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 321 (448)
.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+...
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 98754 357889999999999999987655 77899999999999999853 468899999999999999987654
Q ss_pred ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCC
Q 038011 322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLS 401 (448)
Q Consensus 322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 401 (448)
+..+.+|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ ....++|++|++++|++++..| +..+++|+
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 6677799999999999987655 8899999999999999986544 4455679999999999997655 77899999
Q ss_pred EEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448 (448)
Q Consensus 402 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l 448 (448)
.|++++|++++. ..+..+++|+.|++++|++++..| +.+++.|
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 999999999964 468899999999999999998877 6665543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-34 Score=284.21 Aligned_cols=324 Identities=20% Similarity=0.192 Sum_probs=271.3
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++.+++++ +.+.+. | .+..+++|++|++++|.+. .++ +..+++|++|++++|.+++. + ++++++|
T Consensus 43 ~L~~L~Ls~-----n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 43 TLTSLDCHN-----SSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp TCCEEECCS-----SCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred CCCEEEccC-----CCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 788999998 777764 3 7899999999999999998 455 88999999999999999864 3 8899999
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 241 (448)
++|++++|++++. + ++.+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999999864 3 88999999999999999863 3888999999999999665554 4788999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011 242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321 (448)
Q Consensus 242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 321 (448)
.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.+..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 9986 44 78899999999999999865 37889999999999999997 55 78899999999999999987765
Q ss_pred ccCCCc-------cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc---------cCCCcccEEEccCCc
Q 038011 322 SIVPKC-------MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW---------LAEPNLGTVILSDNM 385 (448)
Q Consensus 322 ~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~---------~~~~~L~~L~L~~n~ 385 (448)
.++.+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. -..++|++|++++|+
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 555544 56777777777776666 578899999999999877665532 122459999999999
Q ss_pred ccccCChhhcCCCCCCEEECcCCcccccCccccc-------------CCCCCCEEeCcCCcccccCchhhh
Q 038011 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMG-------------QSTSVMVLMLSSNNFSGHVPKSIS 443 (448)
Q Consensus 386 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------------~l~~L~~L~l~~n~i~~~~p~~~~ 443 (448)
+++ ++ +..+++|+.|++++|++++ ++. +. .+..|..+++++|+++|.+|..+.
T Consensus 330 l~~-l~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 330 LTE-LD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccc-cc--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 997 43 8889999999999999986 221 11 234678889999999999998754
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-34 Score=276.02 Aligned_cols=310 Identities=21% Similarity=0.208 Sum_probs=265.4
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 160 (448)
.+++.+++++ +.+....+..+..+++|++|++++|.+. .++...|.++++|++|++++|.+.+..|..+.++++
T Consensus 45 ~~l~~l~l~~-----~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEES-----CEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEecC-----CchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4677888887 6666666666889999999999999998 566578999999999999999999888888999999
Q ss_pred CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240 (448)
Q Consensus 161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 240 (448)
|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.+++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 99999999999865555578999999999999999988888899999999999999999864 256789999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 320 (448)
|.+++ +...++|++|++++|.++.. +. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+...
T Consensus 196 n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred ccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 98873 34557899999999999854 32 2357899999999999854 578899999999999999998877
Q ss_pred cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCC
Q 038011 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNL 400 (448)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 400 (448)
..+....+|++|++++|.+++ ++..+..+++|++|++++|++++..+.....++|++|++++|++++ ++ +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence 788888899999999999985 5556678999999999999998554444445679999999999984 44 6778999
Q ss_pred CEEECcCCccccc
Q 038011 401 SVLVLSRNNFSGE 413 (448)
Q Consensus 401 ~~L~L~~n~l~~~ 413 (448)
+.|++++|++.+.
T Consensus 342 ~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEcCCCCccch
Confidence 9999999999864
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-33 Score=277.37 Aligned_cols=306 Identities=20% Similarity=0.157 Sum_probs=256.2
Q ss_pred ccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhcc
Q 038011 101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA 180 (448)
Q Consensus 101 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 180 (448)
..+..+.++++|++|++++|.+. .+| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 34456788999999999999998 455 589999999999999999964 4 88999999999999999864 3 88
Q ss_pred CCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEE
Q 038011 181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTL 260 (448)
Q Consensus 181 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 260 (448)
.+++|++|++++|++++ ++ +..+++|++|++++|++++. + +..+++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 99999999999999986 44 88999999999999999973 3 788999999999999655555 47789999999
Q ss_pred EcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc
Q 038011 261 ALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR 340 (448)
Q Consensus 261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 340 (448)
++++|.+++. + +..+++|++|++++|.+++. .+..+++|++|++++|++++.+ +..+.+|++|++++|+++
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCC
Confidence 9999999964 4 78899999999999999865 3788999999999999999865 556679999999999999
Q ss_pred CCcchhhhcCC-------CCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCCh--------hhcCCCCCCEEEC
Q 038011 341 GPMPLWLSNQT-------ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPP--------RLFESRNLSVLVL 405 (448)
Q Consensus 341 ~~~~~~~~~~~-------~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~L 405 (448)
+..+..+..++ +|+.|++++|.+.+.+| ....++|+.|++++|...+.+|. .+..+++|++|++
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 87655444443 45566666666665555 22336699999999987766654 2556789999999
Q ss_pred cCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 406 SRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 406 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
++|++++ ++ +..+++|+.|++++|+++|
T Consensus 326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 326 NNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 9999997 43 8899999999999999996
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.6e-33 Score=263.71 Aligned_cols=301 Identities=25% Similarity=0.322 Sum_probs=255.5
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++.+++++ +.+... +.+..+++|++|++++|.+. .++. +.++++|++|++++|.+.+ + +.+..+++|
T Consensus 45 ~L~~L~l~~-----~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 45 SITKLVVAG-----EKVASI--QGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp TCSEEECCS-----SCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cccEEEEeC-----Cccccc--hhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 688899988 555443 34888999999999999998 6663 9999999999999999985 3 469999999
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 241 (448)
++|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999985433 889999999999999766444 448999999999999999986433 888999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011 242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321 (448)
Q Consensus 242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 321 (448)
.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-- 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-- 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--
Confidence 9985433 7889999999999999986554 8889999999999999986443 889999999999999998763
Q ss_pred ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011 322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNL 400 (448)
Q Consensus 322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 400 (448)
.+....+|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+.. ++|++|++++|++++..| +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 567777999999999999865 46889999999999999999887776654 569999999999996555 7889999
Q ss_pred CEEECcCCccc
Q 038011 401 SVLVLSRNNFS 411 (448)
Q Consensus 401 ~~L~L~~n~l~ 411 (448)
++|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999986
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=285.61 Aligned_cols=335 Identities=20% Similarity=0.200 Sum_probs=276.6
Q ss_pred CCCCCCCCCCCcc----ceeEEeCC------CCC--------cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEEC
Q 038011 56 GLETWNSSSDCCH----WEMVRCFS------RGS--------SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL 117 (448)
Q Consensus 56 ~~~~w~~~~~~c~----w~~v~c~~------~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 117 (448)
.+.+|.++.+||. |..+.|.. .+. ...++.+++++ +.+....+..+..+++|+.|++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~-----~~l~~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNL 82 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS-----CEESEECTHHHHHCCCCSEEEC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC-----CCCCCcCHHHHccCCCCcEEEC
Confidence 5678988778874 66555431 111 12456666766 6666666667889999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC
Q 038011 118 SYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG 197 (448)
Q Consensus 118 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 197 (448)
++|.+. .++...|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus 83 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 999998 5554789999999999999999998888889999999999999999986666668999999999999999998
Q ss_pred CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhC
Q 038011 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRD 277 (448)
Q Consensus 198 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 277 (448)
..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.++...+..
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--- 230 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--- 230 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---
Confidence 88889999999999999999998642 5668999999999998873 345678999999999998543322
Q ss_pred CCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEe
Q 038011 278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLD 357 (448)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 357 (448)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+.+.....+..+.+|+.|++++|.+++ +|..+..+++|+.|+
T Consensus 231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 3689999999999986 4678999999999999999998877788888899999999999986 566678899999999
Q ss_pred CCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011 358 LSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 358 ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 413 (448)
+++|.+++..+.....++|+.|++++|.+++ ++ +..+++|+.|++++|++.+.
T Consensus 308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 9999999544444445679999999999984 33 66789999999999998864
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-32 Score=283.85 Aligned_cols=338 Identities=23% Similarity=0.257 Sum_probs=259.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
+++++|+|++|.++ .++...|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 47999999999999 77768899999999999999999987788899999999999999999977778899999999999
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCcccc-ccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC----CEEEccc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG-GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM----TTLALSN 264 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L----~~L~l~~ 264 (448)
+++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999997777789999999999999999975 457888999999999999999987666555332221 1233333
Q ss_pred CcCcccch------------------------------------------------------------------------
Q 038011 265 NALTGAIP------------------------------------------------------------------------ 272 (448)
Q Consensus 265 n~l~~~~~------------------------------------------------------------------------ 272 (448)
|.++...+
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 22211000
Q ss_pred -------------------------------hhhhCCCCCcEEeccCCccccccc-------------------hhhhCC
Q 038011 273 -------------------------------QSIRDMTKLVTLRLDSNVLAGEIP-------------------TWLFDL 302 (448)
Q Consensus 273 -------------------------------~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~l~~~ 302 (448)
..+.....++.|++.+|.+.+..+ .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 011222345556665554432111 112346
Q ss_pred CCCCEEEccCCcCCCCCC-------------------------cccCCCccccEEEccCCcCcCCc-chhhhcCCCCCEE
Q 038011 303 HDMKSLFLGGNKLKWNNN-------------------------VSIVPKCMLTELSLRSCSVRGPM-PLWLSNQTELAFL 356 (448)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~-------------------------~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L 356 (448)
++|+.+++++|.+..... ..+....+|+.+++.+++..... +..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 788999999887753221 11223336777777776655433 3457788999999
Q ss_pred eCCCCccccccCcccCCCc-ccEEEccCCccc-ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcc
Q 038011 357 DLSENELEGTYPQWLAEPN-LGTVILSDNMLT-GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434 (448)
Q Consensus 357 ~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 434 (448)
++++|.+.+..+..+.... ++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 9999999887777766544 999999999854 45678889999999999999999998999999999999999999999
Q ss_pred cccCchhhhcCCCC
Q 038011 435 SGHVPKSISNLTLI 448 (448)
Q Consensus 435 ~~~~p~~~~~l~~l 448 (448)
++..|..|.++++|
T Consensus 531 ~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 531 FSLDTFPYKCLNSL 544 (635)
T ss_dssp CBCCCGGGTTCTTC
T ss_pred CCCChhHHhCCCCC
Confidence 98778888887764
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.8e-34 Score=280.73 Aligned_cols=322 Identities=23% Similarity=0.286 Sum_probs=149.2
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCC-------------CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRS-------------LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLN 148 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~-------------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 148 (448)
+.+.+++++ +.+.+..|..++++++ +++|++++|.++ .+|. -.++|++|++++|.+.
T Consensus 35 ~L~~L~l~~-----n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 35 SKTEYYNAW-----SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT 104 (454)
T ss_dssp CHHHHHHHH-----HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS
T ss_pred chhhhhccC-----CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCC
Confidence 344455555 5566666776666665 478888888777 4442 1356777777777776
Q ss_pred ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc
Q 038011 149 GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228 (448)
Q Consensus 149 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 228 (448)
+ +|..+ ++|++|++++|.+++. +.. .++|++|++++|++++ +| .+.++++|++|++++|++++ +|..
T Consensus 105 ~-lp~~~---~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-- 171 (454)
T 1jl5_A 105 E-LPELP---QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-- 171 (454)
T ss_dssp S-CCCCC---TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--
T ss_pred c-ccccc---CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--
Confidence 4 44322 4455555555544321 110 1345555555555543 33 34555555555555555443 2221
Q ss_pred CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc-------------------cchhhhhCCCCCcEEeccCC
Q 038011 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG-------------------AIPQSIRDMTKLVTLRLDSN 289 (448)
Q Consensus 229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~L~~L~l~~n 289 (448)
.++|++|++++|.+++ +| .+..+++|++|++++|.+++ .+| .+..+++|++|++++|
T Consensus 172 -~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred -cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence 1244444444444443 22 24444444444444444432 233 2444455555555555
Q ss_pred ccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--Ccchhh-------------hcC-CCC
Q 038011 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWL-------------SNQ-TEL 353 (448)
Q Consensus 290 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~-------------~~~-~~L 353 (448)
++++ +|. ..++|++|++++|.+.+.+.. ..+|++|++++|.+++ ..|..+ ..+ ++|
T Consensus 248 ~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 248 LLKT-LPD---LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp CCSS-CCS---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred cCCc-ccc---cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 5442 222 123444444444444432210 1244555555554443 111111 111 356
Q ss_pred CEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc--cCcccccCC----------
Q 038011 354 AFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG--ELPETMGQS---------- 421 (448)
Q Consensus 354 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l---------- 421 (448)
+.|++++|++++ +|.. .++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 320 ~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 320 EELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp CEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred CEEECCCCcccc-cccc--CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 666666666654 3332 244777777777766 4555 35677777777777776 566666655
Q ss_pred ---CCCCEEeCcCCcccc--cCchhhhcC
Q 038011 422 ---TSVMVLMLSSNNFSG--HVPKSISNL 445 (448)
Q Consensus 422 ---~~L~~L~l~~n~i~~--~~p~~~~~l 445 (448)
++|+.|++++|+++| .+|.++..+
T Consensus 393 ~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp -----------------------------
T ss_pred cccCcCCEEECCCCcCCccccchhhHhhe
Confidence 677777777777776 677666654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.1e-34 Score=266.89 Aligned_cols=252 Identities=30% Similarity=0.451 Sum_probs=192.5
Q ss_pred CCCCEEEcccCCCCC--ccchhccCCCCCCEEEccC-ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCE
Q 038011 159 RYLEFLDLSTNAIGG--KLSSSVAGLKNLEQLILNG-NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET 235 (448)
Q Consensus 159 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 235 (448)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6777777777777777774 7777677777777777777777777777667777777777777
Q ss_pred EEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCC-CCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMT-KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314 (448)
Q Consensus 236 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 314 (448)
|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L---- 204 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL---- 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC----
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC----
Confidence 77777777766666677777777777777777666666666665 667777777766666666655554 555554
Q ss_pred CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhh
Q 038011 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRL 394 (448)
Q Consensus 315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 394 (448)
++|.+.+..|..+..+++|+.|++++|.+++.++.....++|++|++++|++++.+|..+
T Consensus 205 --------------------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 205 --------------------SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --------------------CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 445555566777888899999999999998777775555669999999999999999999
Q ss_pred cCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCc-ccc
Q 038011 395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN-FSG 436 (448)
Q Consensus 395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~ 436 (448)
..+++|++|++++|+++|.+|.. ..+++|+.+++++|+ +.|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99999999999999999999886 789999999999997 665
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.5e-34 Score=271.11 Aligned_cols=274 Identities=21% Similarity=0.267 Sum_probs=237.9
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC----CCCCCCccceeEEeCCC------CCcceEEEEeCCCCCC
Q 038011 24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETW----NSSSDCCHWEMVRCFSR------GSSKEVTGLDLSNLFP 93 (448)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~~v~c~~~------~~~~~v~~l~l~~~~~ 93 (448)
.+..+|++||++||+.+..|+.+ +...| ....++|.|.|+.|... ....+++.+++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--- 90 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--- 90 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES---
T ss_pred ccCchHHHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC---
Confidence 35567999999999988656544 55678 45668999999999521 1123789999998
Q ss_pred CCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC
Q 038011 94 LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG 173 (448)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 173 (448)
+.+. .+|+.+.++++|++|++++|.+. .+| ..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+.+
T Consensus 91 --n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 91 --VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164 (328)
T ss_dssp --SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred --CCch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence 7776 67788888999999999999998 888 67899999999999999998 789899999999999999988887
Q ss_pred ccchhccC---------CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC
Q 038011 174 KLSSSVAG---------LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 174 ~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
.+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence 88877654 899999999999998 788889999999999999999985 6667889999999999999999
Q ss_pred CCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 245 GEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+.++++|+.+++..+.+..
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 8999999999999999999999988999999999999999999999999999999999999999998877664
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.4e-32 Score=255.91 Aligned_cols=274 Identities=21% Similarity=0.235 Sum_probs=121.3
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 215 (448)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4444444444444333334444444444444444444333444444444444444444443 2232222 344444444
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 293 (448)
+|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 444443333334444444444444444431 223334444444444444444432 221111 344555555555444
Q ss_pred ccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC
Q 038011 294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE 373 (448)
Q Consensus 294 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 373 (448)
..+..+..+++|++|++++|.+.+.....+....+|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 44444444455555555544444332222222333334444444333 33444555666666666666665443333321
Q ss_pred CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc--cCcccccCCCCCCEEeCcCCc
Q 038011 374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG--ELPETMGQSTSVMVLMLSSNN 433 (448)
Q Consensus 374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 433 (448)
.. .....+.++.|++++|++.. ..|..+..+.+++.+++++|+
T Consensus 286 ~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PG-----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cc-----------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 10 00113556667777776642 445566667777777777664
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.9e-32 Score=257.93 Aligned_cols=288 Identities=23% Similarity=0.263 Sum_probs=182.7
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 190 (448)
+++.++++++.+. .+|. .+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5788888888877 6773 33 367888888888887666777888888888888888887777777888888888888
Q ss_pred cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCc
Q 038011 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 888877 4555444 677888888877776555567777777777777777642 445555555 6777777777666
Q ss_pred ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh
Q 038011 269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348 (448)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 348 (448)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+....+|++|++++|.++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4 333222 46666666666666555555666666666666666655544333433444444444444444 3333344
Q ss_pred cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcC------CCCCCEEECcCCccc--ccCcccccC
Q 038011 349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFE------SRNLSVLVLSRNNFS--GELPETMGQ 420 (448)
Q Consensus 349 ~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~--~~~~~~~~~ 420 (448)
.+++ |++|++++|++++..+..+.. ..+|+.|++++|++. +..|..+..
T Consensus 262 ~l~~-----------------------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 262 DLKL-----------------------LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp GCTT-----------------------CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred cCcc-----------------------CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 4444 555555555544332222222 355777777777766 456666777
Q ss_pred CCCCCEEeCcCCc
Q 038011 421 STSVMVLMLSSNN 433 (448)
Q Consensus 421 l~~L~~L~l~~n~ 433 (448)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777777764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.1e-32 Score=257.77 Aligned_cols=294 Identities=20% Similarity=0.198 Sum_probs=233.9
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++.+++++ +.+. .+|..+ .++++.|++++|.+. .++...+.++++|++|++++|.+.+..|..|.++++|
T Consensus 34 ~l~~l~~~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSD-----LGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCS-----SCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCC-----CCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 566788887 5554 445444 368999999999998 5654789999999999999999998889999999999
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc--ccchhccCCCCCCEEEcc
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG--GIPLSLLQLRELETLDLR 239 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~ 239 (448)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++. ..+..+..+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99999999997 4555544 799999999999997777779999999999999999963 566777777 99999999
Q ss_pred cCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCC
Q 038011 240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN 319 (448)
Q Consensus 240 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 319 (448)
+|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC
Confidence 999985 555443 79999999999999888889999999999999999999887788999999999999999999665
Q ss_pred CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccc--ccCChhhcCC
Q 038011 320 NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT--GSLPPRLFES 397 (448)
Q Consensus 320 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~~ 397 (448)
. .+....+|++|++++|.+++..+..+.... + ....+.++.+++++|++. +..|..+..+
T Consensus 258 ~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~----------------~-~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 258 A-GLPDLKLLQVVYLHTNNITKVGVNDFCPVG----------------F-GVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp T-TGGGCTTCCEEECCSSCCCBCCTTSSSCSS----------------C-CSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred h-hhhcCccCCEEECCCCCCCccChhHccccc----------------c-ccccccccceEeecCcccccccCccccccc
Confidence 4 356677999999999999876655553321 0 001233566666666654 3455566667
Q ss_pred CCCCEEECcCCc
Q 038011 398 RNLSVLVLSRNN 409 (448)
Q Consensus 398 ~~L~~L~L~~n~ 409 (448)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.9e-32 Score=255.19 Aligned_cols=278 Identities=23% Similarity=0.269 Sum_probs=193.5
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 215 (448)
++++++++++.+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666666666655 3444443 456666666666665555556666666666666666654445555555555555555
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc--
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG-- 293 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-- 293 (448)
+|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLK-------------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCS-------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCC-------------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 55544 2222221 456666666666665556666677777777777776643
Q ss_pred ccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC
Q 038011 294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE 373 (448)
Q Consensus 294 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 373 (448)
..+..+..+++|++|++++|.+...+.... .+|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 455667777778888888877776544322 47888888888888877888999999999999999999877755544
Q ss_pred -CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC------CCCCCEEeCcCCcccc--cCchhhhc
Q 038011 374 -PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ------STSVMVLMLSSNNFSG--HVPKSISN 444 (448)
Q Consensus 374 -~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~i~~--~~p~~~~~ 444 (448)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|++.. ..|..|..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 56999999999999 88888999999999999999999766666643 4789999999999863 34556665
Q ss_pred CCC
Q 038011 445 LTL 447 (448)
Q Consensus 445 l~~ 447 (448)
+..
T Consensus 318 ~~~ 320 (330)
T 1xku_A 318 VYV 320 (330)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.2e-35 Score=294.09 Aligned_cols=182 Identities=25% Similarity=0.275 Sum_probs=77.1
Q ss_pred CCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCcccch-----hhhhCCCCCcEEeccCCccccc----cch
Q 038011 231 RELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGAIP-----QSIRDMTKLVTLRLDSNVLAGE----IPT 297 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~ 297 (448)
++|++|++++|.+++. ++..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3444444444444432 22333344445555555444433211 1111244455555555544432 233
Q ss_pred hhhCCCCCCEEEccCCcCCCCCCcccCC-----CccccEEEccCCcCcCC----cchhhhcCCCCCEEeCCCCccccccC
Q 038011 298 WLFDLHDMKSLFLGGNKLKWNNNVSIVP-----KCMLTELSLRSCSVRGP----MPLWLSNQTELAFLDLSENELEGTYP 368 (448)
Q Consensus 298 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~ 368 (448)
.+..+++|++|++++|.+.+.+...+.. ..+|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 3444455555555555443322211111 12455555555544432 23334444555555555554443322
Q ss_pred cccC------CCcccEEEccCCcccc----cCChhhcCCCCCCEEECcCCcccc
Q 038011 369 QWLA------EPNLGTVILSDNMLTG----SLPPRLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 369 ~~~~------~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~ 412 (448)
..+. .++|++|++++|++++ .++..+..+++|++|++++|++++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 2211 2235555555555543 344444444555555555555443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.3e-34 Score=286.64 Aligned_cols=351 Identities=19% Similarity=0.179 Sum_probs=275.2
Q ss_pred ceEEEEeCCCCCCCCCCcccccchh-hcCCCCCCEEECCCCCCCCC----CCccccCCCCCCCEEeCCCCccCccCCccc
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKL-IFRIRSLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLNGSIPSQL 155 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 155 (448)
.+++.+++++ +.+....... +..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+.+..+..+
T Consensus 3 ~~l~~L~Ls~-----~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQC-----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEES-----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhh-----cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 4889999998 7776655444 78899999999999998742 33 567888999999999999876444333
Q ss_pred c-CCC----CCCEEEcccCCCCC----ccchhccCCCCCCEEEccCccCCCCCcccc-----CCCCCCCeEecccCcccc
Q 038011 156 F-SLR----YLEFLDLSTNAIGG----KLSSSVAGLKNLEQLILNGNSIQGQIPAEI-----GNLTNLHKLLLLQNEFSG 221 (448)
Q Consensus 156 ~-~l~----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~ 221 (448)
. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2 344 79999999999874 457888999999999999999875433332 235689999999999986
Q ss_pred cc----chhccCCCCCCEEEcccCcCCCCCCcccc-----CCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccC
Q 038011 222 GI----PLSLLQLRELETLDLRRNSLSGEIPNDIG-----ILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDS 288 (448)
Q Consensus 222 ~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~ 288 (448)
.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 43 55667789999999999998754333332 366999999999999864 567788899999999999
Q ss_pred Cccccccch-----hhhCCCCCCEEEccCCcCCCCCCcccC----CCccccEEEccCCcCcCCcchhhhc-----CCCCC
Q 038011 289 NVLAGEIPT-----WLFDLHDMKSLFLGGNKLKWNNNVSIV----PKCMLTELSLRSCSVRGPMPLWLSN-----QTELA 354 (448)
Q Consensus 289 n~l~~~~~~-----~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~ 354 (448)
|.+++.... .+..+++|++|++++|.++..+...++ ...+|++|++++|.+.+..+..+.. .++|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 998754322 223589999999999999875432233 3568999999999997655544433 37999
Q ss_pred EEeCCCCcccccc----CcccC-CCcccEEEccCCcccccCChhhcC-----CCCCCEEECcCCcccc----cCcccccC
Q 038011 355 FLDLSENELEGTY----PQWLA-EPNLGTVILSDNMLTGSLPPRLFE-----SRNLSVLVLSRNNFSG----ELPETMGQ 420 (448)
Q Consensus 355 ~L~ls~n~~~~~~----~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~~~~ 420 (448)
+|++++|.+++.. +..+. .++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 9999999998653 33332 356999999999998765554443 6799999999999997 78888889
Q ss_pred CCCCCEEeCcCCccccc
Q 038011 421 STSVMVLMLSSNNFSGH 437 (448)
Q Consensus 421 l~~L~~L~l~~n~i~~~ 437 (448)
+++|++|++++|++++.
T Consensus 397 ~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCCEEECCSSSCCHH
T ss_pred CCCccEEECCCCCCCHH
Confidence 99999999999999865
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.8e-31 Score=262.43 Aligned_cols=315 Identities=23% Similarity=0.326 Sum_probs=226.0
Q ss_pred ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCC-------------CCEEeCCCCcc
Q 038011 81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTK-------------LVYLDLNNNNL 147 (448)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------L~~L~Ls~n~l 147 (448)
.+++.+++++ +.+ +.+|+.++++++|++|++++|.+.+.+| ..++++++ +++|++++|.+
T Consensus 11 ~~L~~L~l~~-----n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHS-----SNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhccc-----Cch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 3788888888 777 8999999999999999999999988888 77888776 49999999999
Q ss_pred CccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhc
Q 038011 148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227 (448)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 227 (448)
++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++ ++.. .++|++|++++|++++ +| .+
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-cc
Confidence 84 4442 3789999999999986 5543 4789999999999884 3332 2689999999999996 66 59
Q ss_pred cCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCE
Q 038011 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKS 307 (448)
Q Consensus 228 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 307 (448)
..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 999999999999999985 5543 3589999999999986 45 58999999999999999985 4432 368999
Q ss_pred EEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccc
Q 038011 308 LFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT 387 (448)
Q Consensus 308 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~ 387 (448)
|++++|.+...+ .+....+|++|++++|++.+ +|. .+++|+.|++++|.+++ +|.. .++|++|++++|+++
T Consensus 220 L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred EECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccC
Confidence 999999998765 47777899999999999986 343 34899999999999986 4443 245888888888887
Q ss_pred c--cCChhhc-------------CC-CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCch
Q 038011 388 G--SLPPRLF-------------ES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440 (448)
Q Consensus 388 ~--~~~~~~~-------------~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 440 (448)
+ .+|..+. .. ++|++|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~ 354 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE 354 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence 5 2322111 11 356666666666663 4433 466777777777777 4665
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=245.30 Aligned_cols=288 Identities=19% Similarity=0.186 Sum_probs=186.0
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
..|+.....+.+++.++ .+|. .+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34555666788888888 7773 333 5888888888888866666788888888888888888877777788888888
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEccc
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSN 264 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~ 264 (448)
+|++++|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 88888888875555557778888888888887774333 356777777777777773 5544455666677777777777
Q ss_pred CcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc
Q 038011 265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP 344 (448)
Q Consensus 265 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 344 (448)
|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++.+...+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------------------- 243 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-------------------- 243 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------
Confidence 777766666677777777777777766533223334466666666666666543211111
Q ss_pred hhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCC
Q 038011 345 LWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTS 423 (448)
Q Consensus 345 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~ 423 (448)
.....+.++.++++++.+.+ +.+. .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus 244 -~~~~~~~l~~l~L~~~~l~~------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~ 302 (353)
T 2z80_A 244 -TGETNSLIKKFTFRNVKITD------------------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302 (353)
T ss_dssp ----CCCCCCEEEEESCBCCH------------------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred -cccccchhhccccccccccC------------------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence 01123344445544444332 1111 34555666667777777777766 44444 366667
Q ss_pred CCEEeCcCCcccccCc
Q 038011 424 VMVLMLSSNNFSGHVP 439 (448)
Q Consensus 424 L~~L~l~~n~i~~~~p 439 (448)
|++|++++|++++..|
T Consensus 303 L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred CCEEEeeCCCccCcCC
Confidence 7777777777665544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.6e-30 Score=240.06 Aligned_cols=230 Identities=24% Similarity=0.239 Sum_probs=173.8
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCcc--CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS--IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
+++++|++++|.+. .++...|.++++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 57899999999988 77766788899999999999988732 3566677888999999888876 45666888888888
Q ss_pred EEccCccCCCCCc-cccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC-CCCccccCCCCCCEEEcccC
Q 038011 188 LILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG-EIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 188 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n 265 (448)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888888875443 467788888888888888877777777778888888888887765 45667777788888888888
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCc-cccEEEccCCcCcC
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRG 341 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~ 341 (448)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+.... +|++|++++|.+.+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 87776677777777788888888877766565677777777777777777765555555443 56666666666654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=242.40 Aligned_cols=285 Identities=22% Similarity=0.173 Sum_probs=217.4
Q ss_pred eEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCcc
Q 038011 71 MVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS 150 (448)
Q Consensus 71 ~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 150 (448)
...|...+ + .+.++ +.+.. +|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+.+.
T Consensus 27 ~~~C~~~~----~--c~~~~-----~~l~~-iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 27 SLSCDRNG----I--CKGSS-----GSLNS-IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp CCEECTTS----E--EECCS-----TTCSS-CCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred CCCCCCCe----E--eeCCC-----CCccc-cccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCcc
Confidence 45665543 2 56666 44443 444443 58999999999998 67757899999999999999999988
Q ss_pred CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccC-ccccccchhcc
Q 038011 151 IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQN-EFSGGIPLSLL 228 (448)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~ 228 (448)
.+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 88889999999999999999987666669999999999999999985433 47899999999999999 47766677899
Q ss_pred CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh---CCCCC
Q 038011 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF---DLHDM 305 (448)
Q Consensus 229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L 305 (448)
.+++|++|++++|.+++..|..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ..+.+
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 999999999999999988899999999999999999999755555566789999999999999875444332 23444
Q ss_pred CEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCC
Q 038011 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDN 384 (448)
Q Consensus 306 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n 384 (448)
+.++++++.+.+ +.+. .+|.++..+++|+.|++++|+++...+..+. .++|++|++++|
T Consensus 252 ~~l~L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 252 KKFTFRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CEEEEESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccccccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 445444443332 1111 3566778888888888888888743333232 344777777777
Q ss_pred cccccC
Q 038011 385 MLTGSL 390 (448)
Q Consensus 385 ~l~~~~ 390 (448)
++.+..
T Consensus 312 ~~~~~~ 317 (353)
T 2z80_A 312 PWDCSC 317 (353)
T ss_dssp CBCCCH
T ss_pred CccCcC
Confidence 666433
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.5e-29 Score=234.02 Aligned_cols=279 Identities=20% Similarity=0.219 Sum_probs=188.1
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc--cchhccCCCCCCEEEc
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK--LSSSVAGLKNLEQLIL 190 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l 190 (448)
+.++.+++.++ .+|. .+ .++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777777 7773 23 36899999999999855455578899999999999988733 2566777888999999
Q ss_pred cCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 998887 566778888888888888888876443 467778888888888888777777777777888888888887765
Q ss_pred -cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh
Q 038011 270 -AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348 (448)
Q Consensus 270 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 348 (448)
..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+... +.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~ 220 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP------------------------YK 220 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG------------------------GT
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh------------------------cc
Confidence 45667777777777777777777666667777777777777777766544333 44
Q ss_pred cCCCCCEEeCCCCccccccCcccCC-C-cccEEEccCCcccccCC--hhhcCCCCCCEEECcCCcccccCcccccC
Q 038011 349 NQTELAFLDLSENELEGTYPQWLAE-P-NLGTVILSDNMLTGSLP--PRLFESRNLSVLVLSRNNFSGELPETMGQ 420 (448)
Q Consensus 349 ~~~~L~~L~ls~n~~~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 420 (448)
.+++|+.|++++|.+++..+..+.. + +|++|++++|++++... .....+...+.+....+.+....|..+.+
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 4555555555555555544443332 1 35555555555543211 11111223334445555555555555543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.3e-29 Score=230.35 Aligned_cols=180 Identities=27% Similarity=0.277 Sum_probs=76.1
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc-CCCCCccccCCCCCCCeEec
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQGQIPAEIGNLTNLHKLLL 214 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l 214 (448)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333334444444444444444443333444444444444444443 33333334444444444444
Q ss_pred ccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccc
Q 038011 215 LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE 294 (448)
Q Consensus 215 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 294 (448)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 44444433333344444444444444444433333344444444444444444433333344444444444444444433
Q ss_pred cchhhhCCCCCCEEEccCCcC
Q 038011 295 IPTWLFDLHDMKSLFLGGNKL 315 (448)
Q Consensus 295 ~~~~l~~~~~L~~L~L~~n~l 315 (448)
.|..+..+++|++|++++|.+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCC
T ss_pred CHhHccCcccccEeeCCCCcC
Confidence 344444444444444444333
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=239.36 Aligned_cols=228 Identities=22% Similarity=0.226 Sum_probs=172.5
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 56778888888877 44446777888888888888887766667777888888888888887766666677788888888
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccC-ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
+++|.++...+..+.++++|++|++++| .+....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 8888877666667777888888888774 344333446777788888888888777 344 4667778888888888888
Q ss_pred ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc
Q 038011 269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR 340 (448)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 340 (448)
+..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++..+...+..+.+|+.|++++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777888888888888888887777777777888888888888888777766777778888888888765
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3e-28 Score=240.18 Aligned_cols=229 Identities=21% Similarity=0.178 Sum_probs=173.9
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 47788888888877 44436778888888888888888777777788888888888888887766666677788888888
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccC-ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
+++|.++...+..+.++++|++|++++| .+....+..+..+++|+.|++++|.+++. | .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 8888877655667777888888888874 44433344577788888888888887743 3 4667788888888888888
Q ss_pred ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC
Q 038011 269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG 341 (448)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 341 (448)
+..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++..+...+....+|+.|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 7777788888888888888888877777777788888888888888887776667777788888888887653
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=235.63 Aligned_cols=248 Identities=21% Similarity=0.220 Sum_probs=218.4
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191 (448)
Q Consensus 112 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 191 (448)
.+.++.++..+. .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVP-QGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccC-CCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345666666666 677 3332 689999999999998889999999999999999999998888899999999999999
Q ss_pred CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
+|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999997777779999999999999999997777789999999999999854 4434445688999999999999999854
Q ss_pred chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011 271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350 (448)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 350 (448)
| .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.......+..+.+|++|++++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 57889999999999999998889999999999999999999998888788888899999999999998888888999
Q ss_pred CCCCEEeCCCCcccc
Q 038011 351 TELAFLDLSENELEG 365 (448)
Q Consensus 351 ~~L~~L~ls~n~~~~ 365 (448)
++|+.|++++|.+..
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 999999999998764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=233.97 Aligned_cols=246 Identities=23% Similarity=0.232 Sum_probs=217.1
Q ss_pred EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN 193 (448)
Q Consensus 114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 193 (448)
.++.++..+. .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVP-DGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCC-SCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCC-CCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4555556666 677 3333 78999999999999888899999999999999999999888889999999999999999
Q ss_pred cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCcccch
Q 038011 194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALTGAIP 272 (448)
Q Consensus 194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 272 (448)
+++...+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..+..+++|++|++++|.++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 9997767789999999999999999998777789999999999999855 443444578899999999999999984 44
Q ss_pred hhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCC
Q 038011 273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352 (448)
Q Consensus 273 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 352 (448)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.......|..+.+|++|++++|++++..+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4788999999999999999888899999999999999999999988888888889999999999999888888999999
Q ss_pred CCEEeCCCCcccc
Q 038011 353 LAFLDLSENELEG 365 (448)
Q Consensus 353 L~~L~ls~n~~~~ 365 (448)
|+.|++++|.+..
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 9999999998764
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=7.2e-27 Score=236.64 Aligned_cols=295 Identities=22% Similarity=0.283 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCC
Q 038011 56 GLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT 135 (448)
Q Consensus 56 ~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 135 (448)
....|....++|.|++..+.... ...+...+++.|++++|.++ .+| ..+. +
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~-------------------------~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~ 61 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQK-------------------------MRACLNNGNAVLNVGESGLT-TLP-DCLP--A 61 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHH-------------------------HHHHHHHCCCEEECCSSCCS-CCC-SCCC--T
T ss_pred HHHHHHhcCCcchhccccccCcc-------------------------cccccCCCCcEEEecCCCcC-ccC-hhhC--C
Confidence 34568777789999765442100 01112236899999999998 888 3343 8
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 215 (448)
+|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 9999999999998 5565 57899999999999874 444 67899999999999984 454 56889999999
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (448)
+|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 999885 4543 4889999999998874 343 35678889999988885 44 446788888888888874 4
Q ss_pred chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN 375 (448)
Q Consensus 296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 375 (448)
|. ..++|+.|++++|.++..+. ...+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. ..++
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--~~~~ 262 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--LPSG 262 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCTT
T ss_pred CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--cccc
Confidence 43 24778888888888876442 12467778888777775 33 445777777777777773 443 3445
Q ss_pred ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccccc
Q 038011 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMG 419 (448)
Q Consensus 376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 419 (448)
|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 777777777777 6677777777777777777777776666554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.4e-28 Score=224.18 Aligned_cols=208 Identities=26% Similarity=0.259 Sum_probs=189.7
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCC-CCCccchhccCCCCCCE
Q 038011 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA-IGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~ 187 (448)
.+++++|++++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 468999999999998 5665789999999999999999998888899999999999999997 77666888999999999
Q ss_pred EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267 (448)
Q Consensus 188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 267 (448)
|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999988788899999999999999999977667789999999999999999876666788999999999999999
Q ss_pred cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 98889999999999999999999998777789999999999999998864
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.7e-28 Score=226.74 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=152.4
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
..++++.|++++|.+. .+| ..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 4578999999999988 788 56777899999999999988 78888888999999999999887 67888888889999
Q ss_pred EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267 (448)
Q Consensus 188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 267 (448)
|++++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 9998887777777665430 01112333455555555555544 4444445555555555555555
Q ss_pred cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011 268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347 (448)
Q Consensus 268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 347 (448)
++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.-...+..+.+|++|++++|.+.+.+|..+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 42 33345555555555555555555555555555555555555554443222233333345555555555555777777
Q ss_pred hcCCCCCEEeCCCCccc
Q 038011 348 SNQTELAFLDLSENELE 364 (448)
Q Consensus 348 ~~~~~L~~L~ls~n~~~ 364 (448)
..+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 78888888877766554
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.3e-26 Score=232.91 Aligned_cols=263 Identities=24% Similarity=0.294 Sum_probs=133.1
Q ss_pred EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011 83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162 (448)
Q Consensus 83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 162 (448)
++.+++++ +.+. .+|..+. ++|+.|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|+
T Consensus 42 l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~ 104 (622)
T 3g06_A 42 NAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLL 104 (622)
T ss_dssp CCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCC
T ss_pred CcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCC
Confidence 45555555 4443 3333332 45666666666555 4442 3455666666666555 2333 445566
Q ss_pred EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc
Q 038011 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242 (448)
Q Consensus 163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 242 (448)
+|++++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. ..++|+.|++++|.
T Consensus 105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence 666666655432 22 34555666666665552 3332 2555666666665553 222 23455566666665
Q ss_pred CCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcc
Q 038011 243 LSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVS 322 (448)
Q Consensus 243 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 322 (448)
+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++++
T Consensus 173 l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 173 LTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp CSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---
T ss_pred CCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---
Confidence 553 33 234556666666665553 221 1345566666666555 2332 2355666666666555433
Q ss_pred cCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCcccccCChhhc
Q 038011 323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLTGSLPPRLF 395 (448)
Q Consensus 323 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 395 (448)
....+|+.|++++|.++. +|. .+++|+.|++++|.++ .+|..+. .++|+.|++++|++++..|..+.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 122355666666665553 222 3455666666666655 3333332 23366666666666555554443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.4e-29 Score=233.30 Aligned_cols=264 Identities=20% Similarity=0.136 Sum_probs=155.1
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCc
Q 038011 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE 218 (448)
Q Consensus 139 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 218 (448)
..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444432222333344455555555555554444555555555555555555543222 5555566666666665
Q ss_pred cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchh
Q 038011 219 FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTW 298 (448)
Q Consensus 219 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 298 (448)
+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 55321 225666666666666543322 2456677777777776655556666777777777777777655555
Q ss_pred hh-CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcc
Q 038011 299 LF-DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNL 376 (448)
Q Consensus 299 l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L 376 (448)
+. .+++|++|++++|.+++.+.. ....+|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+. .++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCC
Confidence 43 567777777777777654322 1244677777777776643 3346777778888888877774 343333 3457
Q ss_pred cEEEccCCccc-ccCChhhcCCCCCCEEECcCCc-ccccCcc
Q 038011 377 GTVILSDNMLT-GSLPPRLFESRNLSVLVLSRNN-FSGELPE 416 (448)
Q Consensus 377 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 416 (448)
+.|++++|++. +.++..+..+++|+.|+++++. +.|..+.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 77777777776 5666777777777777777443 5554443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.2e-29 Score=232.01 Aligned_cols=201 Identities=21% Similarity=0.188 Sum_probs=122.5
Q ss_pred CCCCCEEEcccCcCCCCCCccc--cCCCCCCEEEcccCcCcccchhhhhCC-----CCCcEEeccCCccccccchhhhCC
Q 038011 230 LRELETLDLRRNSLSGEIPNDI--GILANMTTLALSNNALTGAIPQSIRDM-----TKLVTLRLDSNVLAGEIPTWLFDL 302 (448)
Q Consensus 230 l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~l~~~ 302 (448)
+++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4444444444444444444333 4444444444444444433 3333333 445555555555544444444455
Q ss_pred CCCCEEEccCCcCCCCC----CcccCCCccccEEEccCCcCcC---CcchhhhcCCCCCEEeCCCCccccccC-ccc-CC
Q 038011 303 HDMKSLFLGGNKLKWNN----NVSIVPKCMLTELSLRSCSVRG---PMPLWLSNQTELAFLDLSENELEGTYP-QWL-AE 373 (448)
Q Consensus 303 ~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~-~~ 373 (448)
++|++|++++|++.+.. ...+....+|++|++++|.+++ .....+..+++|++|++++|.+++..| ..+ ..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 55555555555433210 0011333455566666665552 222445678999999999999987664 223 34
Q ss_pred CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 56999999999998 7887775 8899999999999965 66 8889999999999999985
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-28 Score=229.66 Aligned_cols=266 Identities=21% Similarity=0.178 Sum_probs=172.4
Q ss_pred CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240 (448)
Q Consensus 161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 240 (448)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445566665544444455667788999999988887777788888888999998888876544 77888888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 320 (448)
|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+...
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 887632 2347788888888887755443 35677888888888776666667777777777777777766444
Q ss_pred cccC-CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCC
Q 038011 321 VSIV-PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRN 399 (448)
Q Consensus 321 ~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 399 (448)
..+. ...+|++|++++|.+++..+ ...+++|++|++++|.+++..+.....++|++|++++|+++ .+|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 3332 34456666666666654321 22356666666666666654444333344666666666666 45555556666
Q ss_pred CCEEECcCCccc-ccCcccccCCCCCCEEeCcCC-cccccCc
Q 038011 400 LSVLVLSRNNFS-GELPETMGQSTSVMVLMLSSN-NFSGHVP 439 (448)
Q Consensus 400 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~p 439 (448)
|+.|++++|++. +.++..+..+++|+.++++++ .++|..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 666666666665 455555566666666666632 4444333
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.2e-29 Score=234.02 Aligned_cols=251 Identities=20% Similarity=0.229 Sum_probs=189.5
Q ss_pred ccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCC-Cccchhcc-------CCCCCCEEEccCccCCCCCcc
Q 038011 130 GFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIG-GKLSSSVA-------GLKNLEQLILNGNSIQGQIPA 201 (448)
Q Consensus 130 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~ 201 (448)
.+++.++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 456677899999999998 677766543 888888888873 34555554 788999999999999888888
Q ss_pred cc--CCCCCCCeEecccCccccccchhccCC-----CCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc--ch
Q 038011 202 EI--GNLTNLHKLLLLQNEFSGGIPLSLLQL-----RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA--IP 272 (448)
Q Consensus 202 ~l--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~ 272 (448)
.+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8889999999999999876 6666665 8899999999988877778888888899999988887654 23
Q ss_pred hhh--hCCCCCcEEeccCCcccc--ccc-hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011 273 QSI--RDMTKLVTLRLDSNVLAG--EIP-TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347 (448)
Q Consensus 273 ~~~--~~~~~L~~L~l~~n~l~~--~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 347 (448)
..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+... ...+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~ 249 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSC 249 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------------------CSCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------------------hhhh
Confidence 333 778888888888888873 122 334567788888888877765321 0123
Q ss_pred hcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011 348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 348 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 412 (448)
..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 44577888888888887 5565555 6688888888888854 65 7788889999999998875
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2e-26 Score=211.22 Aligned_cols=216 Identities=27% Similarity=0.293 Sum_probs=119.7
Q ss_pred CCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCC
Q 038011 64 SDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLN 143 (448)
Q Consensus 64 ~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls 143 (448)
.++|.|.|+.|...+ ..+.+++++ +.+.. +|..+. ++++.|++++|.+. .++...|.++++|++|+++
T Consensus 2 ~~~C~~~~~~C~c~~---~~~~l~~~~-----~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN---NKNSVDCSS-----KKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCBGGGTCSBEEET---TTTEEECTT-----SCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECC
T ss_pred CccCCCCCCCCEeCC---CCCEEEccC-----CCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECC
Confidence 489999999986543 344566665 44442 333222 45666677666666 4444556666666666666
Q ss_pred CCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccccc
Q 038011 144 NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGI 223 (448)
Q Consensus 144 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 223 (448)
+|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 66666444444566666666666666665544455556666666666666665544445555555555555555555433
Q ss_pred chhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291 (448)
Q Consensus 224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 291 (448)
+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 33345555555555555555443333344444444444444444433333344444444444444443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=229.45 Aligned_cols=225 Identities=21% Similarity=0.179 Sum_probs=131.5
Q ss_pred CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS 263 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 263 (448)
+|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666667777777777777777765443 666666777777666665321 22556666666
Q ss_pred cCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCc
Q 038011 264 NNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPM 343 (448)
Q Consensus 264 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 343 (448)
+|.+++..+. .+++|++|++++|.+++..|..+..+++|++|++++|.++ +..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~ 160 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------------------TVN 160 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC------------------------EEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC------------------------CcC
Confidence 6666544332 2345555666665555544545555555555555555544 444
Q ss_pred chhhh-cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCC
Q 038011 344 PLWLS-NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQST 422 (448)
Q Consensus 344 ~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 422 (448)
|..+. .+++|+.|++++|.+++. +.....++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~ 237 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred hHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCC
Confidence 44443 556666666666666644 222234446666666666663 3334556666666666666666 3555566666
Q ss_pred CCCEEeCcCCccc-ccCchhhhcC
Q 038011 423 SVMVLMLSSNNFS-GHVPKSISNL 445 (448)
Q Consensus 423 ~L~~L~l~~n~i~-~~~p~~~~~l 445 (448)
+|+.|++++|.++ +.+|.++..+
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred CCCEEEcCCCCCcCcchHHHHHhC
Confidence 6666666666666 4555555443
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.3e-28 Score=251.29 Aligned_cols=303 Identities=14% Similarity=0.078 Sum_probs=176.8
Q ss_pred CCCCCCEEeCCCCccCcc----CCccccCCCCCCEEEcccCCCCC----ccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011 133 NLTKLVYLDLNNNNLNGS----IPSQLFSLRYLEFLDLSTNAIGG----KLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204 (448)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~ 204 (448)
++++|++|++++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 445555555555554433 12223344555555555555541 122233445555555555554442 333344
Q ss_pred CCCCCCeEec---------------------------ccCccccccchhccCCCCCCEEEcccCcCCCCCC-ccccCCCC
Q 038011 205 NLTNLHKLLL---------------------------LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIP-NDIGILAN 256 (448)
Q Consensus 205 ~l~~L~~L~l---------------------------~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ 256 (448)
.+++|++|++ +++.. ..+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 4444444444 33221 2344445556667777777666543222 22456677
Q ss_pred CCEEEcccCcCcccchhhhhCCCCCcEEeccC-----------Ccccccc-chhhhCCCCCCEEEccCCcCCCCCCcccC
Q 038011 257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDS-----------NVLAGEI-PTWLFDLHDMKSLFLGGNKLKWNNNVSIV 324 (448)
Q Consensus 257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 324 (448)
|++|+++++.....++.....+++|++|++++ +.+++.. ......+++|++|+++.|.+++.....+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 77777763322222333445567777777772 4454332 22234577788888877777654433333
Q ss_pred C-CccccEEEcc----CCcCcCC-----cchhhhcCCCCCEEeCCCCc--cccccCcccC--CCcccEEEccCCccccc-
Q 038011 325 P-KCMLTELSLR----SCSVRGP-----MPLWLSNQTELAFLDLSENE--LEGTYPQWLA--EPNLGTVILSDNMLTGS- 389 (448)
Q Consensus 325 ~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~ls~n~--~~~~~~~~~~--~~~L~~L~L~~n~l~~~- 389 (448)
. +.+|++|+++ .+.+++. ++..+..+++|+.|++++|. +++..+..+. .++|++|++++|++++.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 3 4578888886 4566653 44456778888888887543 5544433332 45699999999998863
Q ss_pred CChhhcCCCCCCEEECcCCccccc-CcccccCCCCCCEEeCcCCccccc
Q 038011 390 LPPRLFESRNLSVLVLSRNNFSGE-LPETMGQSTSVMVLMLSSNNFSGH 437 (448)
Q Consensus 390 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~ 437 (448)
++..+..+++|++|++++|++++. ++.....+++|++|++++|++++.
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 455567789999999999998755 444456789999999999998865
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.1e-27 Score=231.08 Aligned_cols=233 Identities=21% Similarity=0.140 Sum_probs=130.9
Q ss_pred CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcc
Q 038011 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLR 239 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 239 (448)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444554444444444444445555555555554443222 445555555555555554321 12556666666
Q ss_pred cCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh-CCCCCCEEEccCCcCCCC
Q 038011 240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWN 318 (448)
Q Consensus 240 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~ 318 (448)
+|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6665543332 245666666666666666666666667777777777777665665554 567777777777776654
Q ss_pred CCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCccc-ccCChhhcC
Q 038011 319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLT-GSLPPRLFE 396 (448)
Q Consensus 319 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~ 396 (448)
+. .....+|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+. .++|+.|++++|++. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22 1123456666666666654333 36666777777777777664 333332 344666666666665 455555656
Q ss_pred CCCCCEEECc
Q 038011 397 SRNLSVLVLS 406 (448)
Q Consensus 397 ~~~L~~L~L~ 406 (448)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666554
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.9e-28 Score=245.56 Aligned_cols=324 Identities=11% Similarity=0.032 Sum_probs=225.7
Q ss_pred cCCCCCCEEECCCCCCCCCCC---ccccCCCCCCCEEeCCCCccC----ccCCccccCCCCCCEEEcccCCCCCccchhc
Q 038011 107 FRIRSLMTLDLSYNAMKGEIP---RTGFANLTKLVYLDLNNNNLN----GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV 179 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 179 (448)
..+++|++|++++|.+.+.-. .....++++|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 467888888888887654311 023456778888888887775 2334445567778888887776653 44445
Q ss_pred cCCCCCCEEEcc---------------------------CccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCC
Q 038011 180 AGLKNLEQLILN---------------------------GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLR 231 (448)
Q Consensus 180 ~~l~~L~~L~l~---------------------------~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~ 231 (448)
..+++|++|+++ ++. ...+|..+..+++|++|++++|.+++... ..+..++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 555555555554 322 22456667788999999999999765433 4468899
Q ss_pred CCCEEEcccCcCCCCCCccccCCCCCCEEEccc-----------CcCccc-chhhhhCCCCCcEEeccCCccccccchhh
Q 038011 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSN-----------NALTGA-IPQSIRDMTKLVTLRLDSNVLAGEIPTWL 299 (448)
Q Consensus 232 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 299 (448)
+|++|+++++...+.++.....+++|++|++++ +.+++. .......+++|++|++..+.+++..+..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 999999994432223333345788999999993 566543 23335568999999999999988777777
Q ss_pred hC-CCCCCEEEcc----CCcCCCCCCc-----ccCCCccccEEEccCCc--CcCCcchhh-hcCCCCCEEeCCCCccccc
Q 038011 300 FD-LHDMKSLFLG----GNKLKWNNNV-----SIVPKCMLTELSLRSCS--VRGPMPLWL-SNQTELAFLDLSENELEGT 366 (448)
Q Consensus 300 ~~-~~~L~~L~L~----~n~l~~~~~~-----~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~ls~n~~~~~ 366 (448)
.. +++|+.|+++ .|.+++.+.. .+..+.+|++|++++|. +++..+..+ ..+++|+.|++++|.+++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 66 9999999997 5667664221 13335689999998654 665555555 4489999999999999863
Q ss_pred c-CcccC-CCcccEEEccCCccccc-CChhhcCCCCCCEEECcCCcccccCcccc-cCCCCCCEEeCcCC
Q 038011 367 Y-PQWLA-EPNLGTVILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSGELPETM-GQSTSVMVLMLSSN 432 (448)
Q Consensus 367 ~-~~~~~-~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 432 (448)
. +.... .++|++|++++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+....+..+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 3 33333 35699999999998765 44455678999999999999987644444 35777766666554
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.7e-25 Score=201.76 Aligned_cols=224 Identities=25% Similarity=0.263 Sum_probs=125.0
Q ss_pred EECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc
Q 038011 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS 194 (448)
Q Consensus 115 L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 194 (448)
.+..+..+. .+| ..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip-~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCC-SSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccC-CCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 455 2222 456666666666665555566666666666666666654444455556666666666665
Q ss_pred CCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc-chh
Q 038011 195 IQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA-IPQ 273 (448)
Q Consensus 195 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~ 273 (448)
+++..+..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+++. +|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------------------------KTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC------------------------TTCCEEECCSSCCCCCCCCG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccC------------------------CCCCEEECcCCccceecCch
Confidence 554444455555555555555555544333334444 4444555544444432 344
Q ss_pred hhhCCCCCcEEeccCCccccccchhhhCCCCCC----EEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK----SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349 (448)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 349 (448)
.+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+.+.+...+.. .+|++|++++|.+++..+..+..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 555555555555555555544444444444444 5666666666544333332 25677777777776655556677
Q ss_pred CCCCCEEeCCCCcccccc
Q 038011 350 QTELAFLDLSENELEGTY 367 (448)
Q Consensus 350 ~~~L~~L~ls~n~~~~~~ 367 (448)
+++|+.|++++|.+.+..
T Consensus 223 l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSCCEEECCSSCBCCCT
T ss_pred cccccEEEccCCcccccC
Confidence 778888888888777544
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.3e-25 Score=201.16 Aligned_cols=207 Identities=20% Similarity=0.158 Sum_probs=122.7
Q ss_pred CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS 263 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 263 (448)
+|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666654444455556666666666666555444455555566666666665554444555555555555555
Q ss_pred cCcCcccchhhhhCCCCCcEEeccCCccccc-cchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC
Q 038011 264 NNALTGAIPQSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP 342 (448)
Q Consensus 264 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 342 (448)
+|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ .
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------------------------~ 164 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------------------------I 164 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------------------------E
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc------------------------C
Confidence 5555544444455555555555555555432 34455555555555555554443 3
Q ss_pred cchhhhcCCCCC----EEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccC
Q 038011 343 MPLWLSNQTELA----FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL 414 (448)
Q Consensus 343 ~~~~~~~~~~L~----~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 414 (448)
.+..+..+++|+ .|++++|.+++..+..+...+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 334444444444 778888888766666666666888888888877544445667788888888888877543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.1e-24 Score=193.49 Aligned_cols=203 Identities=27% Similarity=0.277 Sum_probs=162.5
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 190 (448)
..+.++++++.++ .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5778999999988 677 3333 67999999999998766678889999999999999888666666788899999999
Q ss_pred cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99988866666778888888888888888877677778888888888888888866666677888888888888888876
Q ss_pred chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
.+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 66677778888888888888876555567777888888888877654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1e-24 Score=200.04 Aligned_cols=207 Identities=22% Similarity=0.196 Sum_probs=114.3
Q ss_pred CCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEE
Q 038011 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284 (448)
Q Consensus 205 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 284 (448)
.+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44555555555555542 1 2244455555555555555431 234444555555555555544444444444555555
Q ss_pred eccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011 285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 285 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 364 (448)
++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLT------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhccCC------------------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 5555554443333344444 4555555555555444455566666666666666666
Q ss_pred cccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhh
Q 038011 365 GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSIS 443 (448)
Q Consensus 365 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~ 443 (448)
+..+..+.. ++|++|++++|++++..+..+..+++|+.|++++|++.+. +++|+.++++.|+++|.+|.+++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 555544433 3466777777766655555566677777777777766633 44566777777777777777666
Q ss_pred cCC
Q 038011 444 NLT 446 (448)
Q Consensus 444 ~l~ 446 (448)
.+.
T Consensus 244 ~~~ 246 (272)
T 3rfs_A 244 SVA 246 (272)
T ss_dssp CBC
T ss_pred ccC
Confidence 553
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.2e-25 Score=213.23 Aligned_cols=253 Identities=18% Similarity=0.177 Sum_probs=167.6
Q ss_pred EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc----cccCCCC-CCCeEecccCccccccchhccCC-----CC
Q 038011 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP----AEIGNLT-NLHKLLLLQNEFSGGIPLSLLQL-----RE 232 (448)
Q Consensus 163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 232 (448)
++++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888777777779999999999886665 6777888 89999999998887666666554 88
Q ss_pred CCEEEcccCcCCCCCCccc----cCC-CCCCEEEcccCcCcccchhhhh----C-CCCCcEEeccCCccccccc----hh
Q 038011 233 LETLDLRRNSLSGEIPNDI----GIL-ANMTTLALSNNALTGAIPQSIR----D-MTKLVTLRLDSNVLAGEIP----TW 298 (448)
Q Consensus 233 L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~----~~ 298 (448)
|++|++++|.+++..+..+ ... ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8889988888876555433 334 7888888888888766554443 3 3578888888888875433 33
Q ss_pred hhCCC-CCCEEEccCCcCCCCCCcccC----CC-ccccEEEccCCcCcCC----cchhhhc-CCCCCEEeCCCCcccccc
Q 038011 299 LFDLH-DMKSLFLGGNKLKWNNNVSIV----PK-CMLTELSLRSCSVRGP----MPLWLSN-QTELAFLDLSENELEGTY 367 (448)
Q Consensus 299 l~~~~-~L~~L~L~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~ls~n~~~~~~ 367 (448)
+...+ +|++|++++|.+++.+...+. .. .+|++|++++|.+.+. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44554 788888888887765543222 22 3677777777776652 3334444 346777777777766543
Q ss_pred Ccc----cC-CCcccEEEccCCccccc-------CChhhcCCCCCCEEECcCCcccccCc
Q 038011 368 PQW----LA-EPNLGTVILSDNMLTGS-------LPPRLFESRNLSVLVLSRNNFSGELP 415 (448)
Q Consensus 368 ~~~----~~-~~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~ 415 (448)
+.. +. .++|++|++++|.+.+. ++..+..+++|+.||+++|++.+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 321 11 23367777776663321 22234455666666777766665433
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.9e-23 Score=193.05 Aligned_cols=205 Identities=24% Similarity=0.244 Sum_probs=164.8
Q ss_pred hhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCC
Q 038011 105 LIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKN 184 (448)
Q Consensus 105 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 184 (448)
.+.++++++.++++++.++ .+| ..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred cccccCCccEEECCCCCCC-cCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 3567788899999998888 777 3332 688999999999887777888889999999999998875432 267888
Q ss_pred CCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 038011 185 LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264 (448)
Q Consensus 185 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 264 (448)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999988887 6777788888888888888888876667788888888888888888876666677888888888888
Q ss_pred CcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011 265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 265 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 317 (448)
|+++...+..|..+++|++|++++|+++ .+|..+...++|+.+++++|.+.-
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 8888666666777888888888888887 567777777788888888887653
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6e-27 Score=239.15 Aligned_cols=347 Identities=16% Similarity=0.102 Sum_probs=214.3
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhc-CCCCCCEEECCCC-CCCCCCCccccCCCCCCCEEeCCCCccCccCCccc----
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIF-RIRSLMTLDLSYN-AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL---- 155 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---- 155 (448)
+++.+++++ +.+.+..+..+. .+++|++|++++| .+.+......+.++++|++|++++|.+++..+..+
T Consensus 106 ~L~~L~L~~-----~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLKR-----MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEES-----CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEeeC-----cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 577778877 666666666664 6788888888877 44322111334467888888888887665443333
Q ss_pred cCCCCCCEEEcccCC--CCCc-cchhccCCCCCCEEEccCc-cCCCCCccccCCCCCCCeEecccCc-------cc----
Q 038011 156 FSLRYLEFLDLSTNA--IGGK-LSSSVAGLKNLEQLILNGN-SIQGQIPAEIGNLTNLHKLLLLQNE-------FS---- 220 (448)
Q Consensus 156 ~~l~~L~~L~L~~n~--~~~~-~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~n~-------~~---- 220 (448)
..+++|++|++++|. +... ++..+..+++|++|++++| .+. .++..+..+++|++|.++.+. +.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 356688888888776 2211 1122345678888888777 233 255556666677777644331 00
Q ss_pred -------------------cccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEEcccCcCccc-chhhhhCCC
Q 038011 221 -------------------GGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLALSNNALTGA-IPQSIRDMT 279 (448)
Q Consensus 221 -------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~ 279 (448)
+.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.+. .+.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 112222334567777777777654322 122446677777777776 3322 222333467
Q ss_pred CCcEEeccC---------Cccccccchhhh-CCCCCCEEEccCCcCCCCCCcccC-CCccccEEEcc--C----CcCcC-
Q 038011 280 KLVTLRLDS---------NVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIV-PKCMLTELSLR--S----CSVRG- 341 (448)
Q Consensus 280 ~L~~L~l~~---------n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~- 341 (448)
+|++|++.+ +.+++.....+. .+++|++|.+..|.+++.....+. .+++|+.|+++ + +.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 778877732 344433333333 377888887777777654333332 24578888888 3 34442
Q ss_pred ----CcchhhhcCCCCCEEeCCCCccccccCcccC--CCcccEEEccCCcccccCChhh-cCCCCCCEEECcCCcccccC
Q 038011 342 ----PMPLWLSNQTELAFLDLSENELEGTYPQWLA--EPNLGTVILSDNMLTGSLPPRL-FESRNLSVLVLSRNNFSGEL 414 (448)
Q Consensus 342 ----~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~ 414 (448)
.++..+..+++|+.|++++ .+++.....+. .++|++|++++|.+++..+..+ ..+++|++|++++|++++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 2233467788899999877 56554443332 4569999999999876555544 56889999999999986554
Q ss_pred cc-cccCCCCCCEEeCcCCcccc
Q 038011 415 PE-TMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 415 ~~-~~~~l~~L~~L~l~~n~i~~ 436 (448)
+. ....+++|++|++++|+++.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHhCCCCCEEeeeCCCCCH
Confidence 43 34558899999999998864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.7e-24 Score=198.47 Aligned_cols=222 Identities=23% Similarity=0.247 Sum_probs=139.9
Q ss_pred EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN 193 (448)
Q Consensus 114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 193 (448)
.+++..+.+.+... ...+++|++|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 23 ~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHhcCcccccccc---cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 34444554442222 4455666677776666652 2 2456666777777777766542 35666677777777777
Q ss_pred cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchh
Q 038011 194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQ 273 (448)
Q Consensus 194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 273 (448)
.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 76655555566667777777777777655555566677777777777777655555566677777777777777766666
Q ss_pred hhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349 (448)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 349 (448)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. .+.+++.++++.|.+++.+|.+++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 66777777777777777776666666777777777777776653 1223455555555555555554443
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=5.8e-26 Score=215.04 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=151.1
Q ss_pred CCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCC--CCCCEEECCCCCCCCCCCccccCCCCCCCEEe
Q 038011 64 SDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRI--RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLD 141 (448)
Q Consensus 64 ~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 141 (448)
.-|.+|.++.+++. .++.+++++ +.+. +..+..+ ++++.|++++|.+.+..+ .+.++++|++|+
T Consensus 34 ~vc~~W~~~~~~~~----~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~ 99 (336)
T 2ast_B 34 GVCKRWYRLASDES----LWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMD 99 (336)
T ss_dssp SSCHHHHHHHTCST----TSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEE
T ss_pred HHHHHHHHHhcCch----hheeecccc-----ccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEE
Confidence 35667998877532 467788887 5554 4455555 788888888888875544 255788888888
Q ss_pred CCCCccCcc-CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc-cCCC-CCccccCCCCCCCeEecccC-
Q 038011 142 LNNNNLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN-SIQG-QIPAEIGNLTNLHKLLLLQN- 217 (448)
Q Consensus 142 Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~l~~n- 217 (448)
+++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 888887754 6667778888888888888877667777777888888888887 4554 24555666777777777777
Q ss_pred ccccc-cchhccCCC-CCCEEEcccCc--CC-CCCCccccCCCCCCEEEcccCc-CcccchhhhhCCCCCcEEeccCCc-
Q 038011 218 EFSGG-IPLSLLQLR-ELETLDLRRNS--LS-GEIPNDIGILANMTTLALSNNA-LTGAIPQSIRDMTKLVTLRLDSNV- 290 (448)
Q Consensus 218 ~~~~~-~~~~l~~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~- 290 (448)
.+++. ++..+..++ +|++|++++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 66643 455566666 77777777663 33 2233344455556666665555 444444455555555555555553
Q ss_pred cccccchhhhCCCCCCEEEccCC
Q 038011 291 LAGEIPTWLFDLHDMKSLFLGGN 313 (448)
Q Consensus 291 l~~~~~~~l~~~~~L~~L~L~~n 313 (448)
+.......+..+++|++|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 22222223445555555555554
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1e-25 Score=215.41 Aligned_cols=224 Identities=21% Similarity=0.184 Sum_probs=142.4
Q ss_pred EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCC----ccccCCC-CCCEEEcccCCCCCccchhccCC-----C
Q 038011 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP----SQLFSLR-YLEFLDLSTNAIGGKLSSSVAGL-----K 183 (448)
Q Consensus 114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~ 183 (448)
.+++++|.+++.+| ..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45778888886666 555666668888888888876555 6677777 78888888888876666665553 7
Q ss_pred CCCEEEccCccCCCCCccc----cCCC-CCCCeEecccCccccccchhc----cC-CCCCCEEEcccCcCCCCCCc----
Q 038011 184 NLEQLILNGNSIQGQIPAE----IGNL-TNLHKLLLLQNEFSGGIPLSL----LQ-LRELETLDLRRNSLSGEIPN---- 249 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~---- 249 (448)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888888877655543 3334 678888888888776544433 23 25777777777777643322
Q ss_pred cccCCC-CCCEEEcccCcCcccchhhh----hCC-CCCcEEeccCCccccc----cchhhhC-CCCCCEEEccCCcCCCC
Q 038011 250 DIGILA-NMTTLALSNNALTGAIPQSI----RDM-TKLVTLRLDSNVLAGE----IPTWLFD-LHDMKSLFLGGNKLKWN 318 (448)
Q Consensus 250 ~~~~~~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~L~~n~l~~~ 318 (448)
.+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 223343 77777777777765554333 333 4777777777777642 3334444 34677777777776654
Q ss_pred CCcc----cCCCccccEEEccCCc
Q 038011 319 NNVS----IVPKCMLTELSLRSCS 338 (448)
Q Consensus 319 ~~~~----~~~~~~L~~L~l~~n~ 338 (448)
+... +....+|++|++++|.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 4321 1222344555555544
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4e-25 Score=213.35 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=128.7
Q ss_pred cchhccCCCCCCEEEccCccCCCCC----ccccCCCCCCCeEecccCc---cccccchhc-------cCCCCCCEEEccc
Q 038011 175 LSSSVAGLKNLEQLILNGNSIQGQI----PAEIGNLTNLHKLLLLQNE---FSGGIPLSL-------LQLRELETLDLRR 240 (448)
Q Consensus 175 ~~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~~ 240 (448)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|. +++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3445566777778888777776542 2335667777777777753 333444433 5667777777777
Q ss_pred CcCCC----CCCccccCCCCCCEEEcccCcCcccchhhhh----CC---------CCCcEEeccCCcccc-ccc---hhh
Q 038011 241 NSLSG----EIPNDIGILANMTTLALSNNALTGAIPQSIR----DM---------TKLVTLRLDSNVLAG-EIP---TWL 299 (448)
Q Consensus 241 n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~---------~~L~~L~l~~n~l~~-~~~---~~l 299 (448)
|.+.+ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++. .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77665 2444556666777777777766543332222 22 566666666666652 233 344
Q ss_pred hCCCCCCEEEccCCcCCCCCC-----cccCCCccccEEEccCCcCc----CCcchhhhcCCCCCEEeCCCCccccccCcc
Q 038011 300 FDLHDMKSLFLGGNKLKWNNN-----VSIVPKCMLTELSLRSCSVR----GPMPLWLSNQTELAFLDLSENELEGTYPQW 370 (448)
Q Consensus 300 ~~~~~L~~L~L~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 370 (448)
..+++|++|++++|.+...+. ..+....+|++|++++|.++ ..+|..+..+++|+.|++++|.+++....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~- 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA- 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-
Confidence 556666666666666552110 02222334444444444443 23344444444444444444444432100
Q ss_pred cCCCcccEEEccCCcccccCChhhc--CCCCCCEEECcCCcccc----cCcccc-cCCCCCCEEeCcCCcccccC
Q 038011 371 LAEPNLGTVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSG----ELPETM-GQSTSVMVLMLSSNNFSGHV 438 (448)
Q Consensus 371 ~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~i~~~~ 438 (448)
.++..+. .+++|++|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 263 ------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 ------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 0233332 24555555555555554 244444 33455555555555555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.6e-25 Score=216.12 Aligned_cols=188 Identities=18% Similarity=0.208 Sum_probs=90.9
Q ss_pred cCCCCCCEEEccCccCCC----CCccccCCCCCCCeEecccCccccccchh----ccCC---------CCCCEEEcccCc
Q 038011 180 AGLKNLEQLILNGNSIQG----QIPAEIGNLTNLHKLLLLQNEFSGGIPLS----LLQL---------RELETLDLRRNS 242 (448)
Q Consensus 180 ~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~ 242 (448)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555443 23344444555555555555544322222 2222 555555555555
Q ss_pred CCC-CCC---ccccCCCCCCEEEcccCcCcc-----cchhhhhCCCCCcEEeccCCccc----cccchhhhCCCCCCEEE
Q 038011 243 LSG-EIP---NDIGILANMTTLALSNNALTG-----AIPQSIRDMTKLVTLRLDSNVLA----GEIPTWLFDLHDMKSLF 309 (448)
Q Consensus 243 l~~-~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~ 309 (448)
++. .++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 541 222 233445555566666555542 12224555566666666666654 34455555666666666
Q ss_pred ccCCcCCCCCCcccC------CCccccEEEccCCcCcC----Ccchhh-hcCCCCCEEeCCCCcccccc
Q 038011 310 LGGNKLKWNNNVSIV------PKCMLTELSLRSCSVRG----PMPLWL-SNQTELAFLDLSENELEGTY 367 (448)
Q Consensus 310 L~~n~l~~~~~~~~~------~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~ls~n~~~~~~ 367 (448)
+++|.+++.+...++ ...+|++|++++|.+++ .+|..+ .++++|+.|++++|.+++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666665543211111 12344444444444443 244444 44566666666666665443
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.7e-24 Score=205.01 Aligned_cols=255 Identities=20% Similarity=0.222 Sum_probs=161.7
Q ss_pred CCCCEEECCCCCCCCCCCccccCCC--CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc-cchhccCCCCCC
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANL--TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK-LSSSVAGLKNLE 186 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~ 186 (448)
..++.++++++.+.. ..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347788888877651 445555 7788888888888755444 55678888888888877644 666677788888
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccC-cccc-ccchhccCCCCCCEEEcccC-cCCCC-CCccccCCC-CCCEEE
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSG-GIPLSLLQLRELETLDLRRN-SLSGE-IPNDIGILA-NMTTLA 261 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~ 261 (448)
+|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888777666777777788888888877 5654 24555667777777777777 66543 344455666 777777
Q ss_pred cccC--cCc-ccchhhhhCCCCCcEEeccCCc-cccccchhhhCCCCCCEEEccCCc-CCCCCCcccCCCccccEEEccC
Q 038011 262 LSNN--ALT-GAIPQSIRDMTKLVTLRLDSNV-LAGEIPTWLFDLHDMKSLFLGGNK-LKWNNNVSIVPKCMLTELSLRS 336 (448)
Q Consensus 262 l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~ 336 (448)
+++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------------------- 262 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------------------- 262 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------------------
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------------------
Confidence 7777 344 3445556666777777777776 555555666666777777766663 221
Q ss_pred CcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhc
Q 038011 337 CSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLF 395 (448)
Q Consensus 337 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 395 (448)
.....+..+++|+.|++++| ++......+. ..++.|++++|++++..|..++
T Consensus 263 -----~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 263 -----ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -----GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH-HHSTTSEESCCCSCCTTCSSCS
T ss_pred -----HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH-hhCcceEEecccCccccCCccc
Confidence 11123455666666666666 3321111110 1255555666666665555443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.2e-22 Score=187.62 Aligned_cols=204 Identities=24% Similarity=0.147 Sum_probs=157.9
Q ss_pred ccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCC
Q 038011 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE 234 (448)
Q Consensus 155 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 234 (448)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567788899999888887 4454443 678889999988887777788888889999998888875433 26788888
Q ss_pred EEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011 235 TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314 (448)
Q Consensus 235 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 314 (448)
.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 567777788888888888888887767778888888888888888886666667778888888888888
Q ss_pred CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365 (448)
Q Consensus 315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 365 (448)
++..+...+....+|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 88776666666677777777777777 455556666777777777777654
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.5e-23 Score=184.60 Aligned_cols=190 Identities=24% Similarity=0.288 Sum_probs=114.7
Q ss_pred CCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCC
Q 038011 65 DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNN 144 (448)
Q Consensus 65 ~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 144 (448)
+||.|.|..|.. ..+.+++++ +.+. .+|..+. ++++.|++++|.+. .++...+.++++|++|++++
T Consensus 3 ~Cp~~~gC~C~~-----~~~~l~~~~-----~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 3 TCETVTGCTCNE-----GKKEVDCQG-----KSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDY 68 (251)
T ss_dssp -CHHHHSSEEEG-----GGTEEECTT-----CCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred cCCCCCceEcCC-----CCeEEecCC-----CCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCC
Confidence 688999999953 233566665 4433 2333222 46677777777776 33335666677777777777
Q ss_pred CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccc
Q 038011 145 NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP 224 (448)
Q Consensus 145 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 224 (448)
|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 77766556666666777777777776665555556666666666666666664444445566666666666666664444
Q ss_pred hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011 225 LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 225 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 45555666666666666655444445555555555555555554
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.1e-25 Score=229.88 Aligned_cols=331 Identities=15% Similarity=0.090 Sum_probs=224.4
Q ss_pred hcCCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCC-ccCcc-CCccccCCCCCCEEEcccCCCCCccchhc---
Q 038011 106 IFRIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNN-NLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSV--- 179 (448)
Q Consensus 106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--- 179 (448)
...+++|++|++++|.+++..+ ..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 3468889999999988775444 3343 6889999999888 44432 33444578899999999988765444433
Q ss_pred -cCCCCCCEEEccCcc--CCC-CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-------------
Q 038011 180 -AGLKNLEQLILNGNS--IQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS------------- 242 (448)
Q Consensus 180 -~~l~~L~~L~l~~n~--i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------- 242 (448)
..+++|++|++++|. +.. .++..+.++++|++|++++|...+.++..+..+++|+.|++..+.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 367789999998886 221 122223456899999999883322366777778888888765442
Q ss_pred -------------CCC----CCCccccCCCCCCEEEcccCcCcccch-hhhhCCCCCcEEeccCCccccc-cchhhhCCC
Q 038011 243 -------------LSG----EIPNDIGILANMTTLALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLH 303 (448)
Q Consensus 243 -------------l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~ 303 (448)
+.. .++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 111 122222356889999999888764432 33567889999999887 4332 233334588
Q ss_pred CCCEEEccC---------CcCCCCCCcccC-CCccccEEEccCCcCcCCcchhhh-cCCCCCEEeCC--C----Cccccc
Q 038011 304 DMKSLFLGG---------NKLKWNNNVSIV-PKCMLTELSLRSCSVRGPMPLWLS-NQTELAFLDLS--E----NELEGT 366 (448)
Q Consensus 304 ~L~~L~L~~---------n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~ls--~----n~~~~~ 366 (448)
+|++|++.+ +.+++.+...+. .+.+|++|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 999998843 344432222222 245899998888888876665564 68999999999 4 455522
Q ss_pred cC-----ccc-CCCcccEEEccCCcccccCChhhcC-CCCCCEEECcCCcccccCcccc-cCCCCCCEEeCcCCcccccC
Q 038011 367 YP-----QWL-AEPNLGTVILSDNMLTGSLPPRLFE-SRNLSVLVLSRNNFSGELPETM-GQSTSVMVLMLSSNNFSGHV 438 (448)
Q Consensus 367 ~~-----~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~ 438 (448)
.. ..+ ..++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 11 112 235699999987 777666666655 8999999999999987666555 66899999999999997554
Q ss_pred c
Q 038011 439 P 439 (448)
Q Consensus 439 p 439 (448)
+
T Consensus 498 ~ 498 (594)
T 2p1m_B 498 L 498 (594)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=191.91 Aligned_cols=201 Identities=21% Similarity=0.158 Sum_probs=130.6
Q ss_pred CCCCEEEcccCcCCCCCCccc--cCCCCCCEEEcccCcCcccch----hhhhCCCCCcEEeccCCccccccchhhhCCCC
Q 038011 231 RELETLDLRRNSLSGEIPNDI--GILANMTTLALSNNALTGAIP----QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHD 304 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 304 (448)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555554444444 455555555555555543222 22334556666666666665555555566666
Q ss_pred CCEEEccCCcCCCC---C-CcccCCCccccEEEccCCcCcCC--cch-hhhcCCCCCEEeCCCCccccccCcccCC----
Q 038011 305 MKSLFLGGNKLKWN---N-NVSIVPKCMLTELSLRSCSVRGP--MPL-WLSNQTELAFLDLSENELEGTYPQWLAE---- 373 (448)
Q Consensus 305 L~~L~L~~n~l~~~---~-~~~~~~~~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~ls~n~~~~~~~~~~~~---- 373 (448)
|++|++++|++.+. . ...+....+|++|++++|+++.. .+. .+..+++|++|++++|.+++..|..+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 66666666655431 1 01123344677777777776522 112 3578899999999999999876654433
Q ss_pred CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011 374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 46999999999999 7787664 7999999999999953 43 6788999999999999984
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.5e-22 Score=181.84 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=122.8
Q ss_pred CCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEccc-CcCcccchhhhhCCCCCcEEe
Q 038011 208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSN-NALTGAIPQSIRDMTKLVTLR 285 (448)
Q Consensus 208 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 285 (448)
+|++|++++|++++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444445555555555555554 4433333444555555555554 455444444444444455555
Q ss_pred ccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCC-cCcCCcchhhhcCCCCC-EEeCCCCcc
Q 038011 286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSC-SVRGPMPLWLSNQTELA-FLDLSENEL 363 (448)
Q Consensus 286 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~-~L~ls~n~~ 363 (448)
+++|.+++ +|. +..+++|+ .|++|++++| .+.+..+..|..+++|+ .|++++|.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55444442 222 33333333 1126666666 66655566678888888 999999888
Q ss_pred ccccCcccCCCcccEEEccCCc-ccccCChhhcCC-CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCc
Q 038011 364 EGTYPQWLAEPNLGTVILSDNM-LTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN 433 (448)
Q Consensus 364 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 433 (448)
+...+..+...+|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 169 ~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 8544445555569999999995 885556677888 89999999999998 45543 67889999988763
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=4.9e-22 Score=185.40 Aligned_cols=196 Identities=23% Similarity=0.355 Sum_probs=144.9
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
.++++|+.|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45678888888888877 555 477788888888888888743 33 78888888888888887643 3577888888
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA 266 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 266 (448)
+|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 88888888874 33 37788888888888888875433 7777888888888888774332 6777888888888888
Q ss_pred CcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCC
Q 038011 267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN 319 (448)
Q Consensus 267 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 319 (448)
+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.++..+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 775433 677778888888888877543 2677788888888887776533
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=190.41 Aligned_cols=200 Identities=21% Similarity=0.092 Sum_probs=85.6
Q ss_pred CCCEEEcccCCCCCccchhc--cCCCCCCEEEccCccCCCCCc----cccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011 160 YLEFLDLSTNAIGGKLSSSV--AGLKNLEQLILNGNSIQGQIP----AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL 233 (448)
Q Consensus 160 ~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 233 (448)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444443 444444444444444443222 122234444444444444443333444444444
Q ss_pred CEEEcccCcCCCC--C--CccccCCCCCCEEEcccCcCcccc--hh-hhhCCCCCcEEeccCCccccccchhhhCC---C
Q 038011 234 ETLDLRRNSLSGE--I--PNDIGILANMTTLALSNNALTGAI--PQ-SIRDMTKLVTLRLDSNVLAGEIPTWLFDL---H 303 (448)
Q Consensus 234 ~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~--~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~ 303 (448)
++|++++|.+.+. . +..+..+++|++|++++|.++... +. .+..+++|++|++++|.+++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 4444444443321 0 111234445555555555554111 11 23445556666666665555444444443 4
Q ss_pred CCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011 304 DMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 364 (448)
+|++|++++|.++..+... + .+|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 5555555555555332211 1 2344444444444432 11 233444444444444443
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.2e-22 Score=180.83 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=140.5
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc-cCccCCccccCCCCCCEEEccc-CCCCCccchhccCCCCCCEE
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN-LNGSIPSQLFSLRYLEFLDLST-NAIGGKLSSSVAGLKNLEQL 188 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L 188 (448)
+++.|++++|.+. .++...|.++++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7888899888888 6665678888888888888886 7766666788888888888888 88876666778888888888
Q ss_pred EccCccCCCCCccccCCCCCCC---eEecccC-ccccccchhccCCCCCC-EEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011 189 ILNGNSIQGQIPAEIGNLTNLH---KLLLLQN-EFSGGIPLSLLQLRELE-TLDLRRNSLSGEIPNDIGILANMTTLALS 263 (448)
Q Consensus 189 ~l~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 263 (448)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888874 555 77777777 8888888 77765555677777777 7777777776322223333 667777777
Q ss_pred cCc-CcccchhhhhCC-CCCcEEeccCCccccccchhhhCCCCCCEEEccCC
Q 038011 264 NNA-LTGAIPQSIRDM-TKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN 313 (448)
Q Consensus 264 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 313 (448)
+|+ ++...+..|..+ ++|++|++++|.+++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 773 665555666666 677777777776663 3332 4556666666554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.9e-21 Score=175.98 Aligned_cols=178 Identities=24% Similarity=0.273 Sum_probs=102.2
Q ss_pred CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190 (448)
Q Consensus 111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 190 (448)
..+.++++++.+. .+| ..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777776 566 2232 46777777777776666666666777777777777666655555666666666666
Q ss_pred cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 66666655445555566666666666665544444445555555555555555544333444445555555555554444
Q ss_pred chhhhhCCCCCcEEeccCCccc
Q 038011 271 IPQSIRDMTKLVTLRLDSNVLA 292 (448)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~ 292 (448)
.+..+..+++|++|++++|.++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 4444444444444444444443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.3e-21 Score=182.56 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=150.3
Q ss_pred cCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCc
Q 038011 203 IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282 (448)
Q Consensus 203 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 282 (448)
...+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456788999999998874 44 57888999999999998875443 78888999999999988754 3678888999
Q ss_pred EEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCc
Q 038011 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE 362 (448)
Q Consensus 283 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~ 362 (448)
+|++++|.+++. + .+..+++|++|++++|.+.+.+. +..+.+|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999988753 3 37888899999999988887553 5556688888888888876443 7788888888888888
Q ss_pred cccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011 363 LEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412 (448)
Q Consensus 363 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 412 (448)
+++..+ ....++|++|++++|++++. + .+..+++|+.|++++|++++
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh-hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence 875433 44455688888888888743 3 36778888888888888874
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8e-21 Score=166.78 Aligned_cols=162 Identities=27% Similarity=0.292 Sum_probs=118.1
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI 189 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 189 (448)
+++++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 47888889888888 56656678888888888888888866566677888888888888888766666677888888888
Q ss_pred ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
+++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 88888876555567777777777777777776555556667777777777775542 23456666666666666
Q ss_pred cchhhhhCCC
Q 038011 270 AIPQSIRDMT 279 (448)
Q Consensus 270 ~~~~~~~~~~ 279 (448)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6666555443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2e-20 Score=164.17 Aligned_cols=181 Identities=21% Similarity=0.170 Sum_probs=153.0
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG 192 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 192 (448)
+.++.+++.+. .+| . .-.++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p-~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVP-T--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCC-C--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45677777776 666 2 2346899999999999977777788999999999999999877667788999999999999
Q ss_pred ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccch
Q 038011 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP 272 (448)
Q Consensus 193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 272 (448)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 99997666778899999999999999997666678889999999999999987766678889999999999997763
Q ss_pred hhhhCCCCCcEEeccCCccccccchhhhCCCC
Q 038011 273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHD 304 (448)
Q Consensus 273 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 304 (448)
.+++|++|+++.|+++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568899999999999999988776654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.9e-20 Score=187.49 Aligned_cols=186 Identities=24% Similarity=0.345 Sum_probs=119.3
Q ss_pred CCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEecc
Q 038011 208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287 (448)
Q Consensus 208 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 287 (448)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 77888888887775 55544 267888888888777 455 346777788888877775 444 443 77777777
Q ss_pred CCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc
Q 038011 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY 367 (448)
Q Consensus 288 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 367 (448)
+|.+++ +|. .+++|+.|++++|.+++++. ...+|++|++++|.+++ +|. +. ++|+.|++++|.|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56777777777777776443 23466777777776665 343 43 66777777777666 34
Q ss_pred CcccCCCcc-------cEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC
Q 038011 368 PQWLAEPNL-------GTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ 420 (448)
Q Consensus 368 ~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 420 (448)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 196 p~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44 222 45 66666666666 46665666666666666666666666655544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.1e-20 Score=176.52 Aligned_cols=221 Identities=18% Similarity=0.119 Sum_probs=97.2
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc-hhccCCCCCCE-EEccCccCCCCCccccCCCCCCCeEe
Q 038011 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQ-LILNGNSIQGQIPAEIGNLTNLHKLL 213 (448)
Q Consensus 136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~i~~~~~~~l~~l~~L~~L~ 213 (448)
++++|+|++|.++...+.+|.++++|++|+|++|++.+.++ ..|.+++++++ +.+..|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444442222334444444444444444432222 22344444332 23333444433344444444444444
Q ss_pred cccCccccccchhccCCCCCCEEEccc-CcCCCCCCccccCC-CCCCEEEcccCcCcccchhhhhCCCCCcEEeccC-Cc
Q 038011 214 LLQNEFSGGIPLSLLQLRELETLDLRR-NSLSGEIPNDIGIL-ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS-NV 290 (448)
Q Consensus 214 l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~ 290 (448)
+++|++....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++...+..| ...+|+++++.+ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence 444444433333333333444444433 22332222233333 235555555555553332222 234555555543 34
Q ss_pred cccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCC
Q 038011 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN 361 (448)
Q Consensus 291 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n 361 (448)
++...+..|..+++|++|++++|+++.++...+. +|+.|.+.++.....+| .+..+++|+.++++++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4322223455566666666666666554433322 34444444443333444 2566667777776654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.5e-20 Score=188.16 Aligned_cols=207 Identities=25% Similarity=0.370 Sum_probs=158.0
Q ss_pred CCCCCCCCCc-----cceeE-EeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCcccc
Q 038011 58 ETWNSSSDCC-----HWEMV-RCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGF 131 (448)
Q Consensus 58 ~~w~~~~~~c-----~w~~v-~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 131 (448)
.+|..+.+.| .|.++ .|... +++.+++++ +.+.+ +|..+ +++|+.|++++|.+. .+|
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~~----~L~~L~Ls~-----n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---- 96 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLIN----QFSELQLNR-----LNLSS-LPDNL--PPQITVLEITQNALI-SLP---- 96 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHT----TCSEEECCS-----SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----
T ss_pred HHHhccCCccccccchhhhccccccC----CccEEEeCC-----CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----
Confidence 3465556667 68888 67532 688899988 77766 55544 378999999999988 777
Q ss_pred CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK 211 (448)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 211 (448)
..+++|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~ 164 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV 164 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence 346889999999999885 666 654 89999999999876 554 67889999999999885 555 5688999
Q ss_pred EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC-------CEEEcccCcCcccchhhhhCCCCCcEE
Q 038011 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM-------TTLALSNNALTGAIPQSIRDMTKLVTL 284 (448)
Q Consensus 212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L 284 (448)
|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|
T Consensus 165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 9999999886 555 55 88999999999888 5555 443 66 88888888888 466666678888888
Q ss_pred eccCCccccccchhhhCC
Q 038011 285 RLDSNVLAGEIPTWLFDL 302 (448)
Q Consensus 285 ~l~~n~l~~~~~~~l~~~ 302 (448)
++++|.+++.+|..+..+
T Consensus 236 ~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSSCCHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHh
Confidence 888888888777776654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.8e-19 Score=171.29 Aligned_cols=240 Identities=17% Similarity=0.099 Sum_probs=160.6
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCe-Eecc
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHK-LLLL 215 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~l~ 215 (448)
++++.++++++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666677776 5666553 578999999999986555678899999999999998865444 46778888765 5666
Q ss_pred cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc-CcCcccchhhhhCCC-CCcEEeccCCcccc
Q 038011 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN-NALTGAIPQSIRDMT-KLVTLRLDSNVLAG 293 (448)
Q Consensus 216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~ 293 (448)
+|+++...+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7888877777888888999999998888766555555666677777765 456544455555553 5777888888877
Q ss_pred ccchhhhCCCCCCEEEcc-CCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC
Q 038011 294 EIPTWLFDLHDMKSLFLG-GNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA 372 (448)
Q Consensus 294 ~~~~~l~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 372 (448)
.++.......+|+++++. +|.++.++...|..+.+|++|++++|+++...+.. +.+|+.|.+.++.--..+|..-.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchh
Confidence 344444455667777776 36666666656666667777777777766443332 34455555444433334554444
Q ss_pred CCcccEEEccCC
Q 038011 373 EPNLGTVILSDN 384 (448)
Q Consensus 373 ~~~L~~L~L~~n 384 (448)
.++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 455666666543
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.9e-19 Score=157.11 Aligned_cols=163 Identities=27% Similarity=0.237 Sum_probs=110.2
Q ss_pred CCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCC
Q 038011 58 ETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKL 137 (448)
Q Consensus 58 ~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 137 (448)
..|..+...|.|.++.|...+. ..+|..+ .++|++|++++|.+.+..+ ..|.++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l--------------------~~ip~~~--~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L 66 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRH--------------------ASVPAGI--PTNAQILYLHDNQITKLEP-GVFDSLINL 66 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCC--------------------SSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred hccCCCCCEEeCCEeEccCCCc--------------------CccCCCC--CCCCCEEEcCCCccCccCH-HHhhCccCC
Confidence 4455677899999999964321 1122222 2678888888888874334 677788888
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN 217 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 217 (448)
++|++++|.+....+..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 67 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 88888888887555556677778888888888777665566677777777777777776 55666666666777776666
Q ss_pred ccccccchhccCCCCCCEEEcccCcCC
Q 038011 218 EFSGGIPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
++++..+..+..+++|+.|++++|.+.
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666544445556666666666666554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.1e-19 Score=164.97 Aligned_cols=173 Identities=25% Similarity=0.341 Sum_probs=106.3
Q ss_pred CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK 211 (448)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 211 (448)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 345566666666666653 22 35556666666666666654333 5666666666666666653 22 3666666666
Q ss_pred EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291 (448)
Q Consensus 212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 291 (448)
|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666666542 3456666677777776666643 355666667777777776665443 66667777777777777
Q ss_pred ccccchhhhCCCCCCEEEccCCcCCCC
Q 038011 292 AGEIPTWLFDLHDMKSLFLGGNKLKWN 318 (448)
Q Consensus 292 ~~~~~~~l~~~~~L~~L~L~~n~l~~~ 318 (448)
++ ++ .+..+++|+.|++++|.+...
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred CC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 64 33 366677777777777766653
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.1e-18 Score=161.17 Aligned_cols=173 Identities=28% Similarity=0.363 Sum_probs=145.5
Q ss_pred hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL 185 (448)
Q Consensus 106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 185 (448)
+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++ + ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence 346778999999999987 555 37889999999999999985443 8899999999999999875 3 348899999
Q ss_pred CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998853 4688899999999999999864 568889999999999999986544 888999999999999
Q ss_pred cCcccchhhhhCCCCCcEEeccCCcccc
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAG 293 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 293 (448)
.+++. + .+..+++|+.|++++|.++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99854 3 48889999999999998875
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=8.7e-19 Score=177.27 Aligned_cols=172 Identities=26% Similarity=0.332 Sum_probs=77.3
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011 133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212 (448)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 212 (448)
.+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 33444444444444432 22 24444444444444444443222 4444444444444444442 11 34444444444
Q ss_pred ecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc
Q 038011 213 LLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292 (448)
Q Consensus 213 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (448)
++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4444444431 2244444555555555544432 234444555555555555543333 444555555555555554
Q ss_pred cccchhhhCCCCCCEEEccCCcCCCC
Q 038011 293 GEIPTWLFDLHDMKSLFLGGNKLKWN 318 (448)
Q Consensus 293 ~~~~~~l~~~~~L~~L~L~~n~l~~~ 318 (448)
+. ..+..+++|+.|+|++|.+...
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 32 2344455555555555554443
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.4e-18 Score=152.09 Aligned_cols=133 Identities=25% Similarity=0.310 Sum_probs=68.8
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEec
Q 038011 135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL 214 (448)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 214 (448)
++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555555444444555555555555555555444555555555555555555555333333445555555555
Q ss_pred ccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011 215 LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267 (448)
Q Consensus 215 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 267 (448)
++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555544444455555555555555555544444444555555555555544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=166.17 Aligned_cols=177 Identities=24% Similarity=0.202 Sum_probs=147.9
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcccc-CCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 191 (448)
+.++++++.+. .+|. .+ .+.+++|++++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 68899999998 7883 33 35689999999999977777777 89999999999999987777889999999999999
Q ss_pred CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccc---cCCCCCCEEEcccCcCc
Q 038011 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI---GILANMTTLALSNNALT 268 (448)
Q Consensus 192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 268 (448)
+|+++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777788999999999999999998778888999999999999999986544444 56888999999999998
Q ss_pred ccchhhhhCCCC--CcEEeccCCcccc
Q 038011 269 GAIPQSIRDMTK--LVTLRLDSNVLAG 293 (448)
Q Consensus 269 ~~~~~~~~~~~~--L~~L~l~~n~l~~ 293 (448)
...+..+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 777677777776 4788888888763
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=164.79 Aligned_cols=176 Identities=28% Similarity=0.247 Sum_probs=146.6
Q ss_pred EEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011 85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF 163 (448)
Q Consensus 85 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 163 (448)
.+++++ +.+.. +|..+ .+.++.|+|++|.+. .++...+. ++++|++|++++|.+.+..+..|.++++|++
T Consensus 22 ~l~c~~-----~~l~~-iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 22 ILSCSK-----QQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp EEECCS-----SCCSS-CCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EEEeCC-----CCcCc-cCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 577776 55544 44433 246899999999998 56657777 9999999999999999877788999999999
Q ss_pred EEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhc---cCCCCCCEEEccc
Q 038011 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL---LQLRELETLDLRR 240 (448)
Q Consensus 164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~ 240 (448)
|++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 9999999987777789999999999999999998888899999999999999999996544444 5689999999999
Q ss_pred CcCCCCCCccccCCCC--CCEEEcccCcCcc
Q 038011 241 NSLSGEIPNDIGILAN--MTTLALSNNALTG 269 (448)
Q Consensus 241 n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~ 269 (448)
|.++...+..+..++. ++.|++++|.+..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999665566777776 4889999998863
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=5.5e-18 Score=149.82 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=83.2
Q ss_pred EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCC-ccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP-SQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG 192 (448)
Q Consensus 114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 192 (448)
.+++++|.++ .+| ..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555555554 444 222 2334566666666554422 2355556666666666665554444555566666666666
Q ss_pred ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6655555555555556666666666555554555555555666666666555554555555555555555555554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.5e-18 Score=175.47 Aligned_cols=174 Identities=29% Similarity=0.369 Sum_probs=134.8
Q ss_pred hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL 185 (448)
Q Consensus 106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 185 (448)
+..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 356677888888888877 554 47788888888888888875443 77888888888888888642 367788888
Q ss_pred CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 888888888874 3 4577888888888888888754 567788888888888888876555 778888888888888
Q ss_pred cCcccchhhhhCCCCCcEEeccCCccccc
Q 038011 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGE 294 (448)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 294 (448)
.+++. ..+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88754 3577888888888888888754
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4e-18 Score=150.71 Aligned_cols=152 Identities=22% Similarity=0.247 Sum_probs=90.8
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN 217 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 217 (448)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666665 4454443 56777777777776555556666777777777777766555666666666666666666
Q ss_pred ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc
Q 038011 218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292 (448)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 292 (448)
.++...+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666444444555666666666666665555555555555555555555555444444555555555555555443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=150.52 Aligned_cols=153 Identities=23% Similarity=0.275 Sum_probs=108.3
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 216 (448)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888877 4666554 456788888888775544 3467777788888888777766666777777777777777
Q ss_pred CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc
Q 038011 217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293 (448)
Q Consensus 217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 293 (448)
|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776666667777777777777777776666666677777777777777766666666666677777777666654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.5e-17 Score=147.97 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=119.4
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191 (448)
Q Consensus 112 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 191 (448)
-+.++.+++.+. .+| ..+ .++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777788777 777 323 3788999999999887778888888889999999988876666667888888888888
Q ss_pred CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269 (448)
Q Consensus 192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 269 (448)
+|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88888666666778888888888888887 567777778888888888888776555667777777777777777664
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.8e-18 Score=147.09 Aligned_cols=130 Identities=19% Similarity=0.333 Sum_probs=63.3
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011 133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212 (448)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 212 (448)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 333 3555555555555555442 12244555555555555555554444455555555555
Q ss_pred ecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCc
Q 038011 213 LLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 213 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 555555554444445555555555555554 32 222 2333444444444444443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.6e-18 Score=148.38 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=126.8
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56678999999999988 666 4888899999999999775 335788899999999999999877788889999999
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCc-cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE-FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 265 (448)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999999987778889999999999999998 55 444 588899999999999998753 3 6777888888888888
Q ss_pred cCc
Q 038011 266 ALT 268 (448)
Q Consensus 266 ~l~ 268 (448)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.8e-19 Score=186.67 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=114.7
Q ss_pred ChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCC-CCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccc
Q 038011 25 CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNS-SSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVL 103 (448)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~ 103 (448)
..+.++++++++.....+..+. .-..|.. ....+.|.+..+... +++.+++.+ +.+... +
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~----~~~~l~L~~-----n~~~~~-~ 189 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTA---------KKQQPTGDSTPSGTATNSAVSTP----LTPKIELFA-----NGKDEA-N 189 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT---------C------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCc---------ccCCCcCCCCccccCCCceecCC----ccceEEeeC-----CCCCcc-h
Confidence 3455678899988777644333 2344533 335567877766542 688888876 544442 3
Q ss_pred hhhcCCCCCCEEEC-----CCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011 104 KLIFRIRSLMTLDL-----SYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS 178 (448)
Q Consensus 104 ~~~~~l~~L~~L~L-----~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 178 (448)
..+.....|+.+.+ +.|.+. ++...+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..
T Consensus 190 ~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 265 (727)
T 4b8c_D 190 QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE 265 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence 32222222332222 223232 23366777788888888888877 56666667788888888888777 66777
Q ss_pred ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCC-CC
Q 038011 179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILA-NM 257 (448)
Q Consensus 179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L 257 (448)
|.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+.... ..
T Consensus 266 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 343 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG 343 (727)
T ss_dssp GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence 777888888888888877 66777777788888888888776 5666677778888888888877766665554321 11
Q ss_pred CEEEcccCcCcccchhhhhCCCCCcEEeccCC--------ccccccchhhhCCCCCCEEEccCCcCC
Q 038011 258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSN--------VLAGEIPTWLFDLHDMKSLFLGGNKLK 316 (448)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~L~~n~l~ 316 (448)
..+++++|.+++.+|. .|+.|+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 344 ~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 344 LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 2356677777665554 3444455544 222233333444555555666666553
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.7e-18 Score=153.51 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=90.5
Q ss_pred CCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEe
Q 038011 206 LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285 (448)
Q Consensus 206 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 285 (448)
+.++..++++++.+++. + .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 34455666666666642 2 35566777777777776663 33 45666667777777666664433 66666666666
Q ss_pred ccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011 286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365 (448)
Q Consensus 286 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 365 (448)
+++|.+++ ++. +.. ++|++|++++|.+++.+ .+..+.+|++|++++|++++. + .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 66666653 222 112 55666666666655432 233444555555555555432 1 34455555555555555543
Q ss_pred ccCcccCCCcccEEEccCCccc
Q 038011 366 TYPQWLAEPNLGTVILSDNMLT 387 (448)
Q Consensus 366 ~~~~~~~~~~L~~L~L~~n~l~ 387 (448)
. +.....++|+.|++++|+++
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEE
T ss_pred h-HHhccCCCCCEEeCCCCccc
Confidence 3 22222233555555555444
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=150.68 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=141.0
Q ss_pred CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEE
Q 038011 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308 (448)
Q Consensus 229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 308 (448)
.+.++..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456777788888887433 56788999999999999984 44 68889999999999999986544 8899999999
Q ss_pred EccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccc
Q 038011 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTG 388 (448)
Q Consensus 309 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~ 388 (448)
++++|++.+.+.. .. .+|++|++++|.+++. + .+..+++|+.|++++|++++. +.....++|++|++++|++++
T Consensus 91 ~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCcCcc--cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence 9999999986643 23 7899999999999864 3 588999999999999999864 444455669999999999986
Q ss_pred cCChhhcCCCCCCEEECcCCccccc
Q 038011 389 SLPPRLFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 389 ~~~~~~~~~~~L~~L~L~~n~l~~~ 413 (448)
. ..+..+++|+.|++++|++.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6688889999999999998855
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=9.2e-20 Score=183.31 Aligned_cols=209 Identities=19% Similarity=0.166 Sum_probs=111.4
Q ss_pred CCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcE
Q 038011 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVT 283 (448)
Q Consensus 204 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 283 (448)
..+++|+.|++++|+++ .+|..++.+++|+.|++++|......+.. +..+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 34556666666666665 45666666666666665443210000000 0011122344445555555555
Q ss_pred Ee-ccCCccccccch------hhh--CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCC
Q 038011 284 LR-LDSNVLAGEIPT------WLF--DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELA 354 (448)
Q Consensus 284 L~-l~~n~l~~~~~~------~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 354 (448)
|+ ++.|.+.. ++. .+. ....|+.|++++|.+++++. +..+.+|+.|++++|.++ .+|..++.+++|+
T Consensus 414 L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 414 VDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred Ccchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 55 33332211 000 000 01246667777776665442 444556666666666666 4566677777777
Q ss_pred EEeCCCCccccccCcccCCCcccEEEccCCcccccC-ChhhcCCCCCCEEECcCCcccccCccc---ccCCCCCCEEeC
Q 038011 355 FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSL-PPRLFESRNLSVLVLSRNNFSGELPET---MGQSTSVMVLML 429 (448)
Q Consensus 355 ~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l 429 (448)
.|++++|.+++ +|.....++|+.|++++|++++.. |..+..+++|+.|++++|++++..|.. +..+++|+.|++
T Consensus 490 ~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 490 VLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777765 443333445777777777776554 666777777777777777776543321 223666666653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=7.1e-19 Score=176.86 Aligned_cols=181 Identities=18% Similarity=0.133 Sum_probs=143.9
Q ss_pred cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCc-------------cccccchhhhCCCCCCEEE-ccCCcCCC
Q 038011 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV-------------LAGEIPTWLFDLHDMKSLF-LGGNKLKW 317 (448)
Q Consensus 252 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~ 317 (448)
...++|+.|++++|.++ .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677778888888876 667778888888888876654 4556777888888888888 55554332
Q ss_pred CCCc--------ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccc
Q 038011 318 NNNV--------SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTG 388 (448)
Q Consensus 318 ~~~~--------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~ 388 (448)
.... .++ ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.. ++|+.|++++|++++
T Consensus 425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1110 111 1258999999999986 565 999999999999999999 66665554 559999999999995
Q ss_pred cCChhhcCCCCCCEEECcCCcccccC-cccccCCCCCCEEeCcCCcccccCc
Q 038011 389 SLPPRLFESRNLSVLVLSRNNFSGEL-PETMGQSTSVMVLMLSSNNFSGHVP 439 (448)
Q Consensus 389 ~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~p 439 (448)
+| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 77 7999999999999999999776 9999999999999999999997655
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.5e-17 Score=155.06 Aligned_cols=261 Identities=14% Similarity=0.067 Sum_probs=156.8
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccC--------CCCCCEEEcccCCCCCccchhcc
Q 038011 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS--------LRYLEFLDLSTNAIGGKLSSSVA 180 (448)
Q Consensus 109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~ 180 (448)
+++|+.|+|++|.+.. .. ..-..++.++.+.+..+.+ ...+|.+ +++|+.+++.+ .++.+.+..|.
T Consensus 48 l~~L~~LdLs~n~i~~-~~-~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YS-GKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECC-EE-ESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEE-ec-Ccccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 6778888888887651 11 0111222234444444432 2345666 88899999888 77766667788
Q ss_pred CCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcc----ccccchhccCCCCCC-EEEcccCcCCCCCCccc----
Q 038011 181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF----SGGIPLSLLQLRELE-TLDLRRNSLSGEIPNDI---- 251 (448)
Q Consensus 181 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~---- 251 (448)
++++|+.+++++|.+....+.+|..+.++..+....+.. .......|..+..|+ .+.+.... .++..+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 889999999988888767777788877777776655322 111223345556666 44443221 111111
Q ss_pred cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCcccc-
Q 038011 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLT- 330 (448)
Q Consensus 252 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~- 330 (448)
....+++.+.+.++-...........+++|+++++.+|.++......|..+++|+++++.+| +..++...|..+.+|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 12344555555543222111111123667777777777776555556777777777777776 6666666677777777
Q ss_pred EEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEE
Q 038011 331 ELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVI 380 (448)
Q Consensus 331 ~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~ 380 (448)
.+++.+ .++...+.+|.+|++|+.++++.|.++...+..|... +|+.+.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777776 5655556677777777777777777776555556544 376665
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=4.5e-15 Score=142.82 Aligned_cols=266 Identities=12% Similarity=0.116 Sum_probs=177.4
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
.+..++.+.+.++ +. .|+..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.++++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3466777776653 44 5555677765 6888877665 554555566663 577777765 455455566777788888
Q ss_pred EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267 (448)
Q Consensus 188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 267 (448)
+++.+|.++......|. +.+|+.+.+..+ ++......|..+++|+.+++..+ ++......|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88877777744444454 577788877644 55455566777778888887764 34344445555 678888773 445
Q ss_pred cccchhhhhCCCCCcEEeccCCccc-----cccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC
Q 038011 268 TGAIPQSIRDMTKLVTLRLDSNVLA-----GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP 342 (448)
Q Consensus 268 ~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 342 (448)
+......|..+++|+.+.+.++.+. ......|..|++|+.+.+. +.+..++...|..+.+|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5556677788888888888776654 2344567778888888887 4477677777777778888888554 5555
Q ss_pred cchhhhcCCCCCEEeCCCCccccccCcccCCC--cccEEEccCCccc
Q 038011 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAEP--NLGTVILSDNMLT 387 (448)
Q Consensus 343 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~--~L~~L~L~~n~l~ 387 (448)
...+|.++ +|+.+++++|.+.......+... .++.|.+..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 56678888 88888888887765544444432 3777877766544
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.1e-16 Score=131.68 Aligned_cols=134 Identities=28% Similarity=0.226 Sum_probs=99.5
Q ss_pred CCCCCCEEECCCCCCC-CCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 108 RIRSLMTLDLSYNAMK-GEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
..++|+.|++++|.+. +.+| ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3467888888888876 5666 5577788888888888887754 6777788888888888888766677777788888
Q ss_pred EEEccCccCCCCC-ccccCCCCCCCeEecccCccccccc---hhccCCCCCCEEEcccCcCC
Q 038011 187 QLILNGNSIQGQI-PAEIGNLTNLHKLLLLQNEFSGGIP---LSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 187 ~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~ 244 (448)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888877432 2567777888888888887775443 36677777777777777765
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=7.9e-16 Score=132.88 Aligned_cols=128 Identities=28% Similarity=0.336 Sum_probs=69.1
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS-QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 191 (448)
+.++++++.+. .+|. .+. ++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45555555554 5552 222 2566666666665543332 25555666666666666555555555555556666665
Q ss_pred CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC
Q 038011 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
+|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555544444555555555555555555544555555555555555555544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.8e-16 Score=129.08 Aligned_cols=128 Identities=26% Similarity=0.254 Sum_probs=96.2
Q ss_pred CCCCCEEECCCCCCC-CCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011 109 IRSLMTLDLSYNAMK-GEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187 (448)
Q Consensus 109 l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 187 (448)
.++++.|++++|.+. +.+| ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 367888888888887 5677 5677888888888888888754 66778888888888888887667777777888888
Q ss_pred EEccCccCCCC-CccccCCCCCCCeEecccCccccccc---hhccCCCCCCEEEcc
Q 038011 188 LILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIP---LSLLQLRELETLDLR 239 (448)
Q Consensus 188 L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~ 239 (448)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887752 23667777888888888887775444 356777777777765
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.5e-16 Score=145.83 Aligned_cols=284 Identities=14% Similarity=0.105 Sum_probs=153.2
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCC-CCCCCEEeCCCCccC--ccCCccccCCCCCCEEEcccCCCCCccchhccC---
Q 038011 108 RIRSLMTLDLSYNAMKGEIPRTGFAN-LTKLVYLDLNNNNLN--GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG--- 181 (448)
Q Consensus 108 ~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--- 181 (448)
.+.+++.|.++++--...+ ..+.. +++|++|+|++|.+. ..... .++.++.+.+..+. .....|.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred hhCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccc
Confidence 3557888888764211011 22333 778999999998877 22222 22234455555552 22345666
Q ss_pred -----CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc----CCCCCCcccc
Q 038011 182 -----LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS----LSGEIPNDIG 252 (448)
Q Consensus 182 -----l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~~~ 252 (448)
+++|+.+++.+ .++...+.+|.++++|+.+++++|.+....+..|..+.++..+....+. ........+.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888887 7776666778888888888888888776666677776666666555421 1112223344
Q ss_pred CCCCCC-EEEcccCcCcccchhhh----hCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCc
Q 038011 253 ILANMT-TLALSNNALTGAIPQSI----RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC 327 (448)
Q Consensus 253 ~~~~L~-~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 327 (448)
.+..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+++++++|.++.++...|..+.
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 455555 33333211 122111 1234555555554422111111112366777777776666655555555555
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCC-EEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECc
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELA-FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLS 406 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 406 (448)
+|+++++.+| +....+.+|.++++|+ .+++ .+ .++..-+.+|.+|++|+.++++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l-----------------------~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL-----------------------PA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEE-----------------------CT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEE-----------------------cc-cceEEchhhhhCCccCCEEEeC
Confidence 5555555554 4433444455555554 4544 44 3332334555666666666666
Q ss_pred CCcccccCcccccCCCCCCEEe
Q 038011 407 RNNFSGELPETMGQSTSVMVLM 428 (448)
Q Consensus 407 ~n~l~~~~~~~~~~l~~L~~L~ 428 (448)
+|.+....+..|..+++|+.+.
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCccchhhhcCCcchhhhc
Confidence 6666655555666666666654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.2e-16 Score=131.02 Aligned_cols=109 Identities=28% Similarity=0.277 Sum_probs=63.9
Q ss_pred CCCCCEEeCCCCccC-ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011 134 LTKLVYLDLNNNNLN-GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212 (448)
Q Consensus 134 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 212 (448)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777766 45666666667777777777766543 455666666666666666664455555555555555
Q ss_pred ecccCcccccc-chhccCCCCCCEEEcccCcCC
Q 038011 213 LLLQNEFSGGI-PLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 213 ~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 244 (448)
++++|.+++.. +..+..+++|++|++++|.++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 55555555321 134444455555555555444
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4.7e-17 Score=168.64 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=112.3
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCCCCCEE-----eCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCC
Q 038011 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYL-----DLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKN 184 (448)
Q Consensus 110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L-----~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 184 (448)
+.++.|++.++.+. .++ ..+-....|+.+ +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~-~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCC-cch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 46788888888877 344 222222223332 23333333 45677888889999999999887 56666778888
Q ss_pred CCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 038011 185 LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264 (448)
Q Consensus 185 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 264 (448)
|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999888 78888888899999999999888 67888888889999999988887 6677788888999999999
Q ss_pred CcCcccchhhhhCCC-CCcEEeccCCccccccchhhhCCCCCCEEEccCC
Q 038011 265 NALTGAIPQSIRDMT-KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN 313 (448)
Q Consensus 265 n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 313 (448)
|.+++.+|..+.... ....+++++|.+++.+|. .|+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 988888877775542 223467888888877665 3455666655
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.6e-15 Score=131.02 Aligned_cols=130 Identities=25% Similarity=0.325 Sum_probs=97.4
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccch-hccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSS-SVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 216 (448)
++++++++.+. .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 56665543 788888888888765554 377788888888888888877777788888888888888
Q ss_pred CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888776666677777777777777777766677777777777777777776643
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.1e-16 Score=127.82 Aligned_cols=109 Identities=24% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCCCCEEeCCCCccC-ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011 134 LTKLVYLDLNNNNLN-GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212 (448)
Q Consensus 134 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 212 (448)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 366777777777776 56666667777777777777777644 556666667777777666665455555556666666
Q ss_pred ecccCccccc-cchhccCCCCCCEEEcccCcCC
Q 038011 213 LLLQNEFSGG-IPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 213 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
++++|.+++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 6666665542 2244555555555555555554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=2.5e-14 Score=137.65 Aligned_cols=268 Identities=10% Similarity=0.084 Sum_probs=185.6
Q ss_pred CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK 211 (448)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 211 (448)
..+..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.. .++...+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34467777777653 444555667764 6888888765 55455556666 3688888875 555555677888888888
Q ss_pred EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291 (448)
Q Consensus 212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 291 (448)
+++..|.++......|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ ++......|.. .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88888887754444554 578888888744 55455667778888888888764 45455566766 678888884 445
Q ss_pred ccccchhhhCCCCCCEEEccCCcCC-----CCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc
Q 038011 292 AGEIPTWLFDLHDMKSLFLGGNKLK-----WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366 (448)
Q Consensus 292 ~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 366 (448)
+.....+|..+++|+.+++.+|.+. .++...|..+.+|+.+.+.+ .+......+|.+|++|+.+++..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5455667788888888888877665 45556677777888888884 466566677888888888888655 5545
Q ss_pred cCcccCCCcccEEEccCCcccccCChhhcCC-CCCCEEECcCCccc
Q 038011 367 YPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFS 411 (448)
Q Consensus 367 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~ 411 (448)
....|...+|+.+++.+|.........+..+ .+++.|.+..+.+.
T Consensus 338 ~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5556665578888888887764444556556 36778887776543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.3e-15 Score=126.79 Aligned_cols=125 Identities=26% Similarity=0.349 Sum_probs=61.2
Q ss_pred EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN 193 (448)
Q Consensus 114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 193 (448)
.++++++.+. .+|. .+ .++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4455555554 4442 12 135555555555554 44455555555555555555555444444555555555555555
Q ss_pred cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcC
Q 038011 194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL 243 (448)
Q Consensus 194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 243 (448)
++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444444555555555555554433333344444444444444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-14 Score=123.35 Aligned_cols=86 Identities=27% Similarity=0.270 Sum_probs=36.0
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEec
Q 038011 135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL 214 (448)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 214 (448)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34444444444444333333444444444444444444333333344444444444444444333333333334444444
Q ss_pred ccCccc
Q 038011 215 LQNEFS 220 (448)
Q Consensus 215 ~~n~~~ 220 (448)
++|+++
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 444333
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=7e-14 Score=134.83 Aligned_cols=325 Identities=12% Similarity=0.038 Sum_probs=185.0
Q ss_pred cchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccC
Q 038011 102 VLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG 181 (448)
Q Consensus 102 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 181 (448)
-..+|.++++|+.+.+..+ +. .|...+|.+|++|+.+++.++ +......+|.++.+|+.+.+..+ +.......|.+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3457888889999998743 65 677688999999999998765 55455567888888887776543 33233344555
Q ss_pred CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEE
Q 038011 182 LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLA 261 (448)
Q Consensus 182 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 261 (448)
+..++...... .......+|.++++|+.+.+..+.. ......|..+.+|+.+++..+ +.......+..+..|+.+.
T Consensus 139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 44332222221 1213345667777777777765432 234455666777777777654 3323344556666666666
Q ss_pred cccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC
Q 038011 262 LSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG 341 (448)
Q Consensus 262 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 341 (448)
+..+... +........+|+.+.+... ++......+..+..++.+.+..+.. ..+...|.....++.+......+.
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec-
Confidence 6544322 1122233456666666433 2222334555666677776665532 233344555555666655544322
Q ss_pred CcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC
Q 038011 342 PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ 420 (448)
Q Consensus 342 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 420 (448)
...|..+.+|+.+.+..+ ++......|.. .+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++......|..
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 234566677777777554 44333444444 33777777543 44233456667777777777665 55444566777
Q ss_pred CCCCCEEeCcCCcccccCchhhhcCC
Q 038011 421 STSVMVLMLSSNNFSGHVPKSISNLT 446 (448)
Q Consensus 421 l~~L~~L~l~~n~i~~~~p~~~~~l~ 446 (448)
|++|+.+++..+ +. .+...|.+++
T Consensus 365 C~~L~~i~lp~~-~~-~~~~~F~~c~ 388 (394)
T 4fs7_A 365 CINLKKVELPKR-LE-QYRYDFEDTT 388 (394)
T ss_dssp CTTCCEEEEEGG-GG-GGGGGBCTTC
T ss_pred CCCCCEEEECCC-CE-EhhheecCCC
Confidence 777777777644 22 2344455544
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=124.50 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=92.3
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN 217 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 217 (448)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57788888877 5665553 57888888888876 55677777888888888888887666667777777777777777
Q ss_pred ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011 218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268 (448)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 268 (448)
++++..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777777555555666677777777776654
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=3.1e-14 Score=121.15 Aligned_cols=131 Identities=22% Similarity=0.220 Sum_probs=89.6
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011 137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216 (448)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 216 (448)
.+.++++++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777766 4444333 5788888888887766666677778888888888877755555567777777777777
Q ss_pred CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011 217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA 270 (448)
Q Consensus 217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 270 (448)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777765555566677777777777777654444456666777777777766644
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.1e-14 Score=123.82 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=86.8
Q ss_pred hhcCCCCCCEEECCCCCCCCCCCccccCCC-CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011 105 LIFRIRSLMTLDLSYNAMKGEIPRTGFANL-TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK 183 (448)
Q Consensus 105 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 183 (448)
.+..+.+|+.|++++|.+. .++ . +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3556677888888888777 554 3 3333 3788888888877753 5677777777777777777654444456777
Q ss_pred CCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccch----hccCCCCCCEEEcccCcC
Q 038011 184 NLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPL----SLLQLRELETLDLRRNSL 243 (448)
Q Consensus 184 ~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l 243 (448)
+|++|++++|.++ .+|. .+..+++|++|++++|.++. .|. .+..+++|+.|++++|..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777775 3444 56666777777777776663 333 255566666666665543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=3.1e-16 Score=136.22 Aligned_cols=152 Identities=21% Similarity=0.153 Sum_probs=91.3
Q ss_pred CCCCcEEeccCCccccccch------hhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCC
Q 038011 278 MTKLVTLRLDSNVLAGEIPT------WLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351 (448)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~------~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 351 (448)
...++.+++..+.+++..|. .+..+++|++|++++|.+.+.+ .+..+.+|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444333 5555555566666555555433 3333445566666666555 3455556667
Q ss_pred CCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCC-hhhcCCCCCCEEECcCCcccccCccc----------ccC
Q 038011 352 ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLP-PRLFESRNLSVLVLSRNNFSGELPET----------MGQ 420 (448)
Q Consensus 352 ~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~----------~~~ 420 (448)
+|+.|++++|.+++ +|.....++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..
T Consensus 94 ~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 77777777777765 3333333447777777777773221 36777888888888888887665542 667
Q ss_pred CCCCCEEeCcCCccc
Q 038011 421 STSVMVLMLSSNNFS 435 (448)
Q Consensus 421 l~~L~~L~l~~n~i~ 435 (448)
+++|+.|| +|.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 88888886 66665
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.1e-14 Score=118.79 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=26.8
Q ss_pred cCCCCCCCEEeCCCCccCccCCccccCC-CCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCC
Q 038011 131 FANLTKLVYLDLNNNNLNGSIPSQLFSL-RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196 (448)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 196 (448)
+..+++|++|++++|.+. .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence 334455555555555554 2222 2222 2455555555544422 23344444444444444443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=2e-12 Score=124.62 Aligned_cols=307 Identities=9% Similarity=0.008 Sum_probs=220.5
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011 125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204 (448)
Q Consensus 125 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~ 204 (448)
+|...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +......+|.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 566688999999999999754 66566778999999999999765 55455667889999998887654 3334455676
Q ss_pred CCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEE
Q 038011 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284 (448)
Q Consensus 205 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 284 (448)
++..++........ ......|..+++|+.+.+.++. .......|.++.+|+.+.+..+ ++......|..+..|+.+
T Consensus 138 ~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 66544443333322 2334678899999999998654 3345567888999999999766 554666788899999999
Q ss_pred eccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011 285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364 (448)
Q Consensus 285 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 364 (448)
.+..+... +.+......+|+.+.+... +...+...+..+..++.+.+..+... .....|..++.++.+....+.+.
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec
Confidence 88766432 3444556788999988654 34455556777778999999876443 45567888999999988776543
Q ss_pred cccCcccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhh
Q 038011 365 GTYPQWLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSIS 443 (448)
Q Consensus 365 ~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~ 443 (448)
. ..+. ..+|+.+.+.++ ++..-..+|.+|.+|+.+++.++ ++......|..|.+|+.+++..+ ++..-...|.
T Consensus 290 ~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 290 E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 1 2333 345999999765 55344567889999999999755 66555678999999999999876 6623344677
Q ss_pred cCCCC
Q 038011 444 NLTLI 448 (448)
Q Consensus 444 ~l~~l 448 (448)
++++|
T Consensus 364 ~C~~L 368 (394)
T 4fs7_A 364 GCINL 368 (394)
T ss_dssp TCTTC
T ss_pred CCCCC
Confidence 76654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.6e-16 Score=136.66 Aligned_cols=86 Identities=29% Similarity=0.392 Sum_probs=33.8
Q ss_pred cccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL 233 (448)
Q Consensus 154 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 233 (448)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 33334444444444444332 22 3333444444444444443 233333333444444444444432 12 23333444
Q ss_pred CEEEcccCcCC
Q 038011 234 ETLDLRRNSLS 244 (448)
Q Consensus 234 ~~L~l~~n~l~ 244 (448)
++|++++|.++
T Consensus 118 ~~L~l~~N~i~ 128 (198)
T 1ds9_A 118 RVLYMSNNKIT 128 (198)
T ss_dssp SEEEESEEECC
T ss_pred CEEECCCCcCC
Confidence 44444444433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.2e-12 Score=110.45 Aligned_cols=104 Identities=29% Similarity=0.352 Sum_probs=64.2
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG 192 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 192 (448)
+.+++++|.+. .+| ..+ .++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45666666666 555 222 25666666666666655566666666666666666666655555556666666666666
Q ss_pred ccCCCCCccccCCCCCCCeEecccCccc
Q 038011 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFS 220 (448)
Q Consensus 193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 220 (448)
|++++..+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666544445666666666666666554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.2e-12 Score=109.19 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=58.1
Q ss_pred CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG 192 (448)
Q Consensus 113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 192 (448)
+.++++++.+. .+| ..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45555555554 555 2222 5566666666666655555566666666666666666544444455566666666666
Q ss_pred ccCCCCCccccCCCCCCCeEecccCccc
Q 038011 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFS 220 (448)
Q Consensus 193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 220 (448)
|++++..+..+..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6655433334555555555555555554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.2e-12 Score=108.72 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=63.8
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011 137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216 (448)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 216 (448)
.+++++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777766 4555443 5667777777766666566666666666666666666654444555666666666666
Q ss_pred CccccccchhccCCCCCCEEEcccCcCC
Q 038011 217 NEFSGGIPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
|++++..+..|..+++|+.|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665444444555555555555555544
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=5.2e-11 Score=114.66 Aligned_cols=318 Identities=9% Similarity=0.061 Sum_probs=194.6
Q ss_pred chhhcCCC-CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc---cCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011 103 LKLIFRIR-SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN---LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS 178 (448)
Q Consensus 103 ~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 178 (448)
..+|.+++ .|+.+.+..+ ++ .|...+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34566664 5888888754 55 6666888899999999887653 55445567888888888877654 44345566
Q ss_pred ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC
Q 038011 179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT 258 (448)
Q Consensus 179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 258 (448)
|..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|. ...|+.+.+..+... .....+..+.+++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence 788888888888654 33345567778888888888664 3323333443 457888877654322 3344566677777
Q ss_pred EEEcccCcCcccchhh-------------hhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCC
Q 038011 259 TLALSNNALTGAIPQS-------------IRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP 325 (448)
Q Consensus 259 ~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 325 (448)
................ +.....+..+.+.. .++.....+|..+..|+.+.+..+. ...+...|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCccccc
Confidence 7665544332110000 11112233333322 2222334567778888888886543 3345556777
Q ss_pred CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCCCCEEE
Q 038011 326 KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRNLSVLV 404 (448)
Q Consensus 326 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 404 (448)
+..|+.+.+. +.+......+|.+|.+|+.+++..+ ++......|... +|+.+.+..+ ++..-..+|.+|++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 7788888886 3455455667888899999998764 554445566654 4898888654 5533456788889999999
Q ss_pred CcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011 405 LSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 405 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
+.++.... ..+..+..|+.+.+..+.+.
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC-----------
T ss_pred ECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 98876442 35667788888888776543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=4e-14 Score=134.88 Aligned_cols=185 Identities=19% Similarity=0.134 Sum_probs=95.4
Q ss_pred CCCCEEEcccCcCCCCCCccc----c-CCCCCCEEEcccCcCcccchhhh-hCCCCCcEEeccCCccccccchhhh----
Q 038011 231 RELETLDLRRNSLSGEIPNDI----G-ILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLF---- 300 (448)
Q Consensus 231 ~~L~~L~l~~n~l~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~---- 300 (448)
+.|+.|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|++++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777776653222221 1 12456666666666543322222 2234556666666655433322221
Q ss_pred -CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc----CcccC-CC
Q 038011 301 -DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY----PQWLA-EP 374 (448)
Q Consensus 301 -~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~----~~~~~-~~ 374 (448)
..++|++|+|++|.+++.+.. .++..+..+++|++|++++|.+++.. ...+. .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 234444444444444321111 23344566777777777777776432 22222 23
Q ss_pred cccEEEccCCccccc----CChhhcCCCCCCEEECcCCcccccCcccccCC---CC--CCEEe--CcCCccc
Q 038011 375 NLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRNNFSGELPETMGQS---TS--VMVLM--LSSNNFS 435 (448)
Q Consensus 375 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~--L~~L~--l~~n~i~ 435 (448)
+|++|+|++|.+++. ++..+..+++|++|+|++|+|++.....+..+ .. |+.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 478888888877743 33445556788888888888876544444332 11 66666 6666655
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.7e-12 Score=107.74 Aligned_cols=104 Identities=24% Similarity=0.224 Sum_probs=66.1
Q ss_pred CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN 217 (448)
Q Consensus 138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 217 (448)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5565554 66777777777776666666677777777777777766544444566666666666666
Q ss_pred ccccccchhccCCCCCCEEEcccCcCC
Q 038011 218 EFSGGIPLSLLQLRELETLDLRRNSLS 244 (448)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (448)
++++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666443334555666666666666554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=7e-14 Score=133.16 Aligned_cols=164 Identities=20% Similarity=0.142 Sum_probs=106.0
Q ss_pred CCcEEeccCCccccccchhhhC-----CCCCCEEEccCCcCCCCCCcccC-CCccccEEEccCCcCcCCcchhh-----h
Q 038011 280 KLVTLRLDSNVLAGEIPTWLFD-----LHDMKSLFLGGNKLKWNNNVSIV-PKCMLTELSLRSCSVRGPMPLWL-----S 348 (448)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~-----~ 348 (448)
.|++|++++|.++......+.. .++|++|+|++|.+++.+...+. ...+|++|++++|.+++.....+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4555555555554322222221 14566666666655443222221 12257777777777765433333 3
Q ss_pred cCCCCCEEeCCCCccccccCcc----c-CCCcccEEEccCCccccc----CChhhcCCCCCCEEECcCCccccc----Cc
Q 038011 349 NQTELAFLDLSENELEGTYPQW----L-AEPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRNNFSGE----LP 415 (448)
Q Consensus 349 ~~~~L~~L~ls~n~~~~~~~~~----~-~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~ 415 (448)
..++|++|++++|.++...... + ..++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4688999999999997533222 2 245699999999999853 355667788999999999999864 44
Q ss_pred ccccCCCCCCEEeCcCCcccccCchhhh
Q 038011 416 ETMGQSTSVMVLMLSSNNFSGHVPKSIS 443 (448)
Q Consensus 416 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~ 443 (448)
..+..+++|++|+|++|.|++.-...+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 4455679999999999999865444443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=9.4e-11 Score=112.84 Aligned_cols=301 Identities=9% Similarity=0.061 Sum_probs=201.1
Q ss_pred CcccccchhhcCCCCCCEEECCCCC---CCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC
Q 038011 97 NVTSDVLKLIFRIRSLMTLDLSYNA---MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG 173 (448)
Q Consensus 97 ~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 173 (448)
.+...-..+|.+|++|+.+.+..+. +. .+...+|.++.+|+.+.+..+ +......+|..+.+|+.+.+..+ +..
T Consensus 74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~ 150 (394)
T 4gt6_A 74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTS 150 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eee
Confidence 3444555688999999999998763 55 677788999999999988665 44455678889999999999754 333
Q ss_pred ccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCcc---
Q 038011 174 KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND--- 250 (448)
Q Consensus 174 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--- 250 (448)
.....|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. .....+..+..++................
T Consensus 151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 4gt6_A 151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEK 227 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEE
T ss_pred ecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecc
Confidence 55567889999999999765 44344445543 67899888765333 44556777888888776654432111000
Q ss_pred ----------ccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011 251 ----------IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320 (448)
Q Consensus 251 ----------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 320 (448)
+.....+..+.+.. .++......|..+..|+.+.+..+..+ .....+..+++|+.+.+. +.+..++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~ 304 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE 304 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT
T ss_pred cccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc
Confidence 11223344444432 233344567888899999988765432 445677889999999986 45666777
Q ss_pred cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCC
Q 038011 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRN 399 (448)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~ 399 (448)
..|..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++......|... +|+.+++.++.... ..+..+.+
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 78888889999999764 55555678999999999999765 554555666664 49999999876541 45677888
Q ss_pred CCEEECcCCccc
Q 038011 400 LSVLVLSRNNFS 411 (448)
Q Consensus 400 L~~L~L~~n~l~ 411 (448)
|+.+.+..+.+.
T Consensus 380 L~~i~i~~~~~~ 391 (394)
T 4gt6_A 380 LQNLPVAPGSID 391 (394)
T ss_dssp C-----------
T ss_pred CCEEEeCCCCEE
Confidence 999888776543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=8.7e-11 Score=111.06 Aligned_cols=92 Identities=23% Similarity=0.310 Sum_probs=75.6
Q ss_pred cchhhcCCCCCCEEECCC-CCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhcc
Q 038011 102 VLKLIFRIRSLMTLDLSY-NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA 180 (448)
Q Consensus 102 ~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 180 (448)
+|. +..+++|+.|+|++ |.+. .++...|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 566 88888899999986 8888 66657888999999999999999888888888899999999999988866555566
Q ss_pred CCCCCCEEEccCccCC
Q 038011 181 GLKNLEQLILNGNSIQ 196 (448)
Q Consensus 181 ~l~~L~~L~l~~n~i~ 196 (448)
.++ |++|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 555 888888888876
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.2e-10 Score=110.06 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=89.6
Q ss_pred EEECCCC-CCCCCCCccccCCCCCCCEEeCCC-CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011 114 TLDLSYN-AMKGEIPRTGFANLTKLVYLDLNN-NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191 (448)
Q Consensus 114 ~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 191 (448)
.++++++ .+. .+| . +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577777 787 788 4 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred CccCCCCCccccCCCCCCCeEecccCcccc
Q 038011 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSG 221 (448)
Q Consensus 192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 221 (448)
+|++++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999966556666555 9999999998874
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=7.8e-09 Score=98.83 Aligned_cols=300 Identities=10% Similarity=0.077 Sum_probs=139.1
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186 (448)
Q Consensus 107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 186 (448)
....+|+.+.+.. .++ .|+..+|.+|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +.......|.. .+|+
T Consensus 43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 3344555555543 233 444455666666666666433 333334445444 4555544332 22222223333 2566
Q ss_pred EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC------------CCCCccccCC
Q 038011 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS------------GEIPNDIGIL 254 (448)
Q Consensus 187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~ 254 (448)
.+.+..+- +......+.++ +++.+.+..+ ++......+..+..++.+.+..+... ......+...
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 66554432 21222233332 3444443322 22122333444555555544432211 0111122233
Q ss_pred CCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEc
Q 038011 255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSL 334 (448)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 334 (448)
..+..+.+.... .......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.++...|..+.+|+.+.+
T Consensus 194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 344444433322 1123344455556666665443 22233345556666666666554 44444445555556666666
Q ss_pred cCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011 335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413 (448)
Q Consensus 335 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 413 (448)
..+ +......+|..+++|+.+.+.++.++......|... +|+.+.|..+ ++..-..+|.+|++|+.+.+..+ ++..
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 443 333334456666777777776666654444455443 3677766543 33233445666777777766544 3323
Q ss_pred CcccccCC
Q 038011 414 LPETMGQS 421 (448)
Q Consensus 414 ~~~~~~~l 421 (448)
....|.++
T Consensus 348 ~~~aF~~c 355 (379)
T 4h09_A 348 ESGAFEGS 355 (379)
T ss_dssp CTTTTTTS
T ss_pred chhHhhCC
Confidence 33444444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=4.6e-09 Score=100.45 Aligned_cols=297 Identities=11% Similarity=0.036 Sum_probs=186.9
Q ss_pred eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011 82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161 (448)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 161 (448)
+++++.+.. .+......+|.+|.+|+.+++..+ +. .|...+|.++ +|+.+.+..+ +......+|.. .+|
T Consensus 47 ~i~~v~ip~------~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 47 RISEVRVNS------GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GCSEEEECT------TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred CCEEEEeCC------CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 566777763 566666678999999999999754 55 7777889888 6888877654 44344445655 479
Q ss_pred CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc------------ccchhccC
Q 038011 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG------------GIPLSLLQ 229 (448)
Q Consensus 162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~ 229 (448)
+.+.+..+- .......|.++ +++.+.+..+ ++......+..+.+++.+.+..+.... .....+..
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 999987653 22333445443 5777666543 333445567777788777765543211 11122334
Q ss_pred CCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEE
Q 038011 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF 309 (448)
Q Consensus 230 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 309 (448)
...+..+.+..... ......+....+++.+.+..+ +.......|..+..|+.+.+..+ ++......+..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 44555555543322 133344556677787777544 33345566777788888888655 4444455677788888888
Q ss_pred ccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccc
Q 038011 310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTG 388 (448)
Q Consensus 310 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~ 388 (448)
+..+ +...+...|..+.+|+.+.+.++.+......+|.+|.+|+.+++..+ ++......|... +|+.+.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 7643 55555667777778888888877777666677888888888888754 544444556554 4888877654 442
Q ss_pred cCChhhcCCC
Q 038011 389 SLPPRLFESR 398 (448)
Q Consensus 389 ~~~~~~~~~~ 398 (448)
.-..+|.+++
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 3344555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.9e-10 Score=107.37 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=68.6
Q ss_pred hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh--cCCCCCEEeCCC--Cccccc-----c
Q 038011 297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS--NQTELAFLDLSE--NELEGT-----Y 367 (448)
Q Consensus 297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~ls~--n~~~~~-----~ 367 (448)
..+..+|+|+.|++++|.-...+ .+ ...+|+.|++..|.+.......+. .+|+|+.|+++. +...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455566666666655211111 11 134666666666665543333333 566666666642 111111 0
Q ss_pred Cccc---CCCcccEEEccCCcccccCChhhc---CCCCCCEEECcCCccccc----CcccccCCCCCCEEeCcCCcccc
Q 038011 368 PQWL---AEPNLGTVILSDNMLTGSLPPRLF---ESRNLSVLVLSRNNFSGE----LPETMGQSTSVMVLMLSSNNFSG 436 (448)
Q Consensus 368 ~~~~---~~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~ 436 (448)
...+ ..++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.|+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 0111 134577777766666543332222 345677777777666653 22333345667777777766663
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1e-09 Score=103.52 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=69.6
Q ss_pred hhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc--CCCCCCEEEccc--CcCCCC-----C
Q 038011 177 SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL--QLRELETLDLRR--NSLSGE-----I 247 (448)
Q Consensus 177 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~ 247 (448)
..+..+++|+.|++.++.-. .++. +. +++|++|++..+.+.......+. .+++|+.|+++. +...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44556667777777665211 2222 22 56777777777666543333333 567777777642 111111 0
Q ss_pred Cccc--cCCCCCCEEEcccCcCcccchhhhh---CCCCCcEEeccCCccccccc----hhhhCCCCCCEEEccCCcCCC
Q 038011 248 PNDI--GILANMTTLALSNNALTGAIPQSIR---DMTKLVTLRLDSNVLAGEIP----TWLFDLHDMKSLFLGGNKLKW 317 (448)
Q Consensus 248 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~ 317 (448)
...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+... ..+..+++|+.|++++|.+++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 0111 2356677777766666543332232 34566666666666654322 222334555555555555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=3.1e-10 Score=101.73 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=51.4
Q ss_pred cCCCCCCEEEcccCCCCC--ccchhccCCCCCCEEEccCccCCCCCccccCCCC--CCCeEecccCccccccc-------
Q 038011 156 FSLRYLEFLDLSTNAIGG--KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT--NLHKLLLLQNEFSGGIP------- 224 (448)
Q Consensus 156 ~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~------- 224 (448)
.++++|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356778888888887775 3345556777788888888777643 2233333 77777777777765443
Q ss_pred hhccCCCCCCEEE
Q 038011 225 LSLLQLRELETLD 237 (448)
Q Consensus 225 ~~l~~l~~L~~L~ 237 (448)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345667777665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.5e-08 Score=86.26 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=72.3
Q ss_pred cchhhhCCCCCCEEEccCC-cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc---
Q 038011 295 IPTWLFDLHDMKSLFLGGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW--- 370 (448)
Q Consensus 295 ~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~--- 370 (448)
+...+...+.|++|+|++| .+...+.. .+...+...++|++|++++|.+.......
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~--------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~ 87 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLK--------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHH--------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHH--------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHH
Confidence 3445566778888888887 76653222 12233444556666666666654322111
Q ss_pred -c-CCCcccEEEccCCccccc----CChhhcCCCCCCEEEC--cCCccccc----CcccccCCCCCCEEeCcCCccc
Q 038011 371 -L-AEPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVL--SRNNFSGE----LPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 371 -~-~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
+ ..++|++|+|++|.+++. +...+...++|++|+| ++|.+.+. +.+.+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 123466666666666643 3455566677888888 77777754 3344555678888888888775
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=5.1e-08 Score=82.95 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=10.1
Q ss_pred hhhcCCCCCEEeCCCCccc
Q 038011 346 WLSNQTELAFLDLSENELE 364 (448)
Q Consensus 346 ~~~~~~~L~~L~ls~n~~~ 364 (448)
.+...++|++|++++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 3444455556665555543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.2e-06 Score=78.41 Aligned_cols=82 Identities=26% Similarity=0.244 Sum_probs=50.5
Q ss_pred hCCCCCcEEeccCCcccc--ccchhhhCCCCCCEEEccCCcCCCCC-CcccCCCccccEEEccCCcCcCCcc-------h
Q 038011 276 RDMTKLVTLRLDSNVLAG--EIPTWLFDLHDMKSLFLGGNKLKWNN-NVSIVPKCMLTELSLRSCSVRGPMP-------L 345 (448)
Q Consensus 276 ~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-------~ 345 (448)
..+++|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+.. ...+... +|++|++++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 446677777777777765 34455666777777777777777642 1122222 66666777666654333 3
Q ss_pred hhhcCCCCCEEeC
Q 038011 346 WLSNQTELAFLDL 358 (448)
Q Consensus 346 ~~~~~~~L~~L~l 358 (448)
.+..+|+|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4567778877763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=8.2e-07 Score=73.77 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=60.0
Q ss_pred cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCc-cccccCcccCC-----CcccEEEccCCc-ccccCChhhcCCCCC
Q 038011 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE-LEGTYPQWLAE-----PNLGTVILSDNM-LTGSLPPRLFESRNL 400 (448)
Q Consensus 328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~-----~~L~~L~L~~n~-l~~~~~~~~~~~~~L 400 (448)
.|++|++++|.++..--..+..+++|+.|++++|. +++..-..+.. ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 67888888887776655667788888888888884 66544444433 248888888875 776655667778888
Q ss_pred CEEECcCCc-cc
Q 038011 401 SVLVLSRNN-FS 411 (448)
Q Consensus 401 ~~L~L~~n~-l~ 411 (448)
++|++++|+ ++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888886 44
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=2.5e-06 Score=70.87 Aligned_cols=82 Identities=11% Similarity=0.173 Sum_probs=39.2
Q ss_pred CCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc-CcccchhhhhCC----CCCcEEeccCCc-cccccchhhhCCCCC
Q 038011 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA-LTGAIPQSIRDM----TKLVTLRLDSNV-LAGEIPTWLFDLHDM 305 (448)
Q Consensus 232 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~~L 305 (448)
.|+.||+++|.++...-..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34455555554443333334445555555555552 443333334432 245555555553 444444444555555
Q ss_pred CEEEccCC
Q 038011 306 KSLFLGGN 313 (448)
Q Consensus 306 ~~L~L~~n 313 (448)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=4.2e-05 Score=64.72 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=56.6
Q ss_pred hhhhCCCCCCEEEccCC-cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC---
Q 038011 297 TWLFDLHDMKSLFLGGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA--- 372 (448)
Q Consensus 297 ~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~--- 372 (448)
..+..-+.|++|+|++| .+...+... +...+..-..|+.|+|++|.+.+..-..+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~--------------------la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL 94 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRS--------------------LIEAACNSKHIEKFSLANTAISDSEARGLIELI 94 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHH--------------------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHH--------------------HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH
Confidence 33445677888888774 665432211 222333344455555555554432211111
Q ss_pred --CCcccEEEccCCccccc----CChhhcCCCCCCEEECcCC---cccc----cCcccccCCCCCCEEeCcCCccc
Q 038011 373 --EPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRN---NFSG----ELPETMGQSTSVMVLMLSSNNFS 435 (448)
Q Consensus 373 --~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~i~ 435 (448)
...|++|+|++|.|.+. +...+...+.|++|+|++| .+.. .+.+.+...+.|+.|+++.|.+.
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 12255555555555432 2233444455666666644 2232 13334445566666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=5.7e-05 Score=63.88 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=10.7
Q ss_pred hhhhcCCCCCEEeCCCCcc
Q 038011 345 LWLSNQTELAFLDLSENEL 363 (448)
Q Consensus 345 ~~~~~~~~L~~L~ls~n~~ 363 (448)
..+..-+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 3445556666666665543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.64 E-value=0.0037 Score=49.09 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=41.1
Q ss_pred CEEeCCCCccc-cccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccc
Q 038011 354 AFLDLSENELE-GTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411 (448)
Q Consensus 354 ~~L~ls~n~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 411 (448)
..++.+++.++ ..+|..+ ..++++|+|++|+|+..-+..+..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888876 2344332 334889999999998544456677888999999998875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.0067 Score=47.61 Aligned_cols=33 Identities=33% Similarity=0.284 Sum_probs=12.9
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEEcccC
Q 038011 137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169 (448)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 169 (448)
|++|+|++|.|+...+..|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444332333333334444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.84 E-value=15 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=21.9
Q ss_pred CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEccc
Q 038011 125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST 168 (448)
Q Consensus 125 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 168 (448)
.|...+|.+|..|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444455556666666555443 2323344555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.17 E-value=45 Score=24.01 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=14.1
Q ss_pred hccCCCCCCEEEccCccCCCCCccccCCCCCCCeEec
Q 038011 178 SVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL 214 (448)
Q Consensus 178 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 214 (448)
.|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3444444444444332 22222333444444444444
Done!