BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038012
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 22/117 (18%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--------DFS----------NLTSF 68
           L GPI P++A L  L  +Y+ + N+S  IP+FL+        DFS          +++S 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 69  ISAIFMDFSNNIFSGAIP--YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVD 123
            + + + F  N  SGAIP  Y    K  T + +S N LTG I   P    LNL FVD
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLNLAFVD 203



 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           LSG + PS+++L +L  I  D   +S  IP+    FS L  F S   M  S N  +G IP
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--FTS---MTISRNRLTGKIP 191

Query: 87  YLHILKNLTHLDLSNNLLTG 106
                 NL  +DLS N+L G
Sbjct: 192 PTFANLNLAFVDLSRNMLEG 211



 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 10  WNNVRCDK--AVFSLAQYFLSG-------PIHPSLANLQSLSEIYLDNI-NLSSTIPEFL 59
           W  V CD     + +    LSG       PI  SLANL  L+ +Y+  I NL   IP  +
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 60  ADFSNLTSFISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLN 118
           A  + L       ++  ++   SGAIP +L  +K L  LD S N L+G +  +    L N
Sbjct: 98  AKLTQLH------YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPN 150

Query: 119 LVFV 122
           LV +
Sbjct: 151 LVGI 154


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 73  FMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDXXXXX 128
           F+D S+N FS  IP+L     L HLD+S N L+G     IS+    +LLN+         
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SS 256

Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
                      L  LQ L LA+N+F G+I  F    + A DTL
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTL 296



 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L+G I   L+N  +L+ I L N  L+  IP+++    NL        +  SNN FSG IP
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA------ILKLSNNSFSGNIP 531

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQ 115
             L   ++L  LDL+ NL  G I +  ++Q
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561



 Score = 36.6 bits (83), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            L G I   L  +++L  + LD  +L+  IP  L++ +NL       ++  SNN  +G I
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN------WISLSNNRLTGEI 506

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISS 110
           P ++  L+NL  L LSNN  +G I +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPA 532



 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            LSG I   + ++  L  + L + ++S +IP+ + D   L        +D S+N   G I
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN------ILDLSSNKLDGRI 696

Query: 86  PY-LHILKNLTHLDLSNNLLTGVI 108
           P  +  L  LT +DLSNN L+G I
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPI 720



 Score = 34.3 bits (77), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 15  CDKAVFSLAQYFL-----SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI 69
           C     +L + +L     +G I P+L+N   L  ++L    LS TIP  L   S L    
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL- 447

Query: 70  SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXXXX 128
             +++    N+  G IP  L  +K L  L L  N LTG I S       NL ++      
Sbjct: 448 -KLWL----NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNR 501

Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQI 157
                      L  L  L+L++N F G I
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNI 530



 Score = 32.7 bits (73), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 20  FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
            SL+   L+G I   +  L++L+ + L N + S  IP  L D  +L      I++D + N
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL------IWLDLNTN 548

Query: 80  IFSGAIP 86
           +F+G IP
Sbjct: 549 LFNGTIP 555



 Score = 29.3 bits (64), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           + +L    +SG I   + +L+ L+ + L +  L   IP+ ++  + LT       +D SN
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE------IDLSN 713

Query: 79  NIFSGAIPYL 88
           N  SG IP +
Sbjct: 714 NNLSGPIPEM 723


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 73  FMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDXXXXX 128
           F+D S+N FS  IP+L     L HLD+S N L+G     IS+    +LLN+         
Sbjct: 201 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SS 253

Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
                      L  LQ L LA+N+F G+I  F    + A DTL
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTL 293



 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L+G I   L+N  +L+ I L N  L+  IP+++    NL        +  SNN FSG IP
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA------ILKLSNNSFSGNIP 528

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQ 115
             L   ++L  LDL+ NL  G I +  ++Q
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558



 Score = 37.0 bits (84), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            L G I   L  +++L  + LD  +L+  IP  L++ +NL       ++  SNN  +G I
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN------WISLSNNRLTGEI 503

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISS 110
           P ++  L+NL  L LSNN  +G I +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPA 529



 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            LSG I   + ++  L  + L + ++S +IP+ + D   L        +D S+N   G I
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN------ILDLSSNKLDGRI 693

Query: 86  PY-LHILKNLTHLDLSNNLLTGVI 108
           P  +  L  LT +DLSNN L+G I
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPI 717



 Score = 34.3 bits (77), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 15  CDKAVFSLAQYFL-----SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI 69
           C     +L + +L     +G I P+L+N   L  ++L    LS TIP  L   S L    
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL- 444

Query: 70  SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXXXX 128
             +++    N+  G IP  L  +K L  L L  N LTG I S       NL ++      
Sbjct: 445 -KLWL----NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNR 498

Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQI 157
                      L  L  L+L++N F G I
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNI 527



 Score = 33.1 bits (74), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 20  FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
            SL+   L+G I   +  L++L+ + L N + S  IP  L D  +L      I++D + N
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL------IWLDLNTN 545

Query: 80  IFSGAIP 86
           +F+G IP
Sbjct: 546 LFNGTIP 552



 Score = 29.6 bits (65), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           + +L    +SG I   + +L+ L+ + L +  L   IP+ ++  + LT       +D SN
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE------IDLSN 710

Query: 79  NIFSGAIPYL 88
           N  SG IP +
Sbjct: 711 NNLSGPIPEM 720


>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
           From Yersinia Pestis
 pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
           Effector Protein From Yersinia Pestis
          Length = 454

 Score = 33.9 bits (76), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 19/100 (19%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPE-------------FLADFSNLTSFISAIFMDFSNN 79
           P L NL  L+ IY DN NL  T+P+             +L D   L    S  F+D S N
Sbjct: 231 PELQNLPFLTTIYADN-NLLKTLPDLPPSLEALNVRDNYLTDLPELPQ--SLTFLDVSEN 287

Query: 80  IFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119
           IFSG      +  NL +L+ S+N +  +    P  + LN+
Sbjct: 288 IFSG---LSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 324


>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
 pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
          Length = 168

 Score = 30.4 bits (67), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 22/114 (19%)

Query: 31  IHPSLANL--QSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDF----------- 76
           IH  L N    ++ E+ LDN   +   I    A+F NL  F+S I +             
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISVSNLPKLPK 72

Query: 77  -------SNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVD 123
                   N IF G       L NLTHL+LS N L  + +  P ++L  L  +D
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126


>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
 pdb|2JE0|B Chain B, Crystal Structure Of Pp32
 pdb|2JE0|C Chain C, Crystal Structure Of Pp32
 pdb|2JE0|D Chain D, Crystal Structure Of Pp32
 pdb|2JE0|E Chain E, Crystal Structure Of Pp32
 pdb|2JE0|F Chain F, Crystal Structure Of Pp32
 pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
          Length = 149

 Score = 29.6 bits (65), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 75  DFSNNIFSGAIPYL-HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVD 123
           + S+N  SG +  L     NLTHL+LS N +  + +  P ++L NL  +D
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119


>pdb|1M1C|A Chain A, Structure Of The L-A Virus
 pdb|1M1C|B Chain B, Structure Of The L-A Virus
          Length = 680

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 36  ANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAI 72
            +   L++ Y DN +  + IPEF+ D   +  F++AI
Sbjct: 529 GDTHGLTKFYADNGDTWTHIPEFVTDGDVMEVFVTAI 565


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 77  SNNIFSGAIPYLHILKNLTHLDLSNNLLTG 106
           S N+ S      H L+N+ HLDLS+N LTG
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513


>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
           (Replication Factor C, Rfc) Bound To The Dna Sliding
           Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 353

 Score = 26.9 bits (58), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 5   RDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSE--IYL-DNINLSSTIPEFLA 60
           R  S+  NV+CD  V        +G +   +  LQS S+   YL D  N++ST  E LA
Sbjct: 202 RFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260


>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
          Protein
          Length = 143

 Score = 26.9 bits (58), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFS 77
          VF LAQ    G +   L N      I L  INL   + +FL    N+ +F++A    F 
Sbjct: 37 VFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLC-LKNIRTFLTACCETFG 94


>pdb|3MMR|A Chain A, Structure Of Plasmodium Falciparum Arginase In Complex
           With Abh
 pdb|3SL0|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
           2-Amino-6- Borono-2-(Difluoromethyl)hexanoic Acid
 pdb|3SL1|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
           2-Amino-6- Borono-2-Methylhexanoic Acid
          Length = 413

 Score = 26.6 bits (57), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 34  SLANLQSLSEIYLD---NINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI 90
           SL   Q+L  I++D   +IN+  T P    ++  +T       +  +  +F   +PY   
Sbjct: 205 SLQMYQNLRVIWIDAHGDINIPETSPS--GNYHGMT-------LAHTLGLFKKKVPYFEW 255

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLL 117
            +NLT+L   N  + G+     +E+++
Sbjct: 256 SENLTYLKPENTAIIGIRDIDAYEKII 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,970,213
Number of Sequences: 62578
Number of extensions: 124640
Number of successful extensions: 380
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 68
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)