Query 038012
Match_columns 171
No_of_seqs 126 out of 1166
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.2E-22 7E-27 169.8 12.2 157 1-158 51-229 (968)
2 PLN00113 leucine-rich repeat r 99.8 3.3E-18 7.1E-23 145.5 9.9 143 15-158 140-301 (968)
3 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 118.0 -4.5 145 16-165 34-197 (264)
4 KOG4194 Membrane glycoprotein 99.6 4.5E-17 9.8E-22 127.4 0.2 143 16-158 270-433 (873)
5 KOG4194 Membrane glycoprotein 99.6 1.3E-16 2.8E-21 124.8 1.7 136 16-152 174-352 (873)
6 KOG0617 Ras suppressor protein 99.6 8.4E-18 1.8E-22 113.6 -4.6 122 34-164 28-150 (264)
7 PLN03150 hypothetical protein; 99.6 2.4E-14 5.3E-19 116.6 9.8 116 9-130 403-528 (623)
8 KOG0444 Cytoskeletal regulator 99.5 2.6E-15 5.6E-20 118.9 0.9 140 12-154 4-186 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 1E-14 2.2E-19 110.0 0.2 138 15-158 252-544 (565)
10 KOG4237 Extracellular matrix p 99.4 1.7E-13 3.6E-18 103.1 3.2 142 16-158 68-339 (498)
11 KOG0472 Leucine-rich repeat pr 99.4 6.9E-15 1.5E-19 110.8 -5.4 140 18-168 163-302 (565)
12 PLN03150 hypothetical protein; 99.3 5.1E-12 1.1E-16 103.2 8.6 112 40-158 419-532 (623)
13 KOG0444 Cytoskeletal regulator 99.3 1.2E-13 2.7E-18 109.6 -2.2 82 70-154 223-304 (1255)
14 KOG0618 Serine/threonine phosp 99.3 1.9E-13 4.2E-18 111.7 -3.0 82 70-155 384-466 (1081)
15 PF14580 LRR_9: Leucine-rich r 99.2 9.9E-12 2.1E-16 85.7 3.6 121 17-147 21-146 (175)
16 KOG0618 Serine/threonine phosp 99.2 9.2E-13 2E-17 107.8 -2.0 135 8-152 352-487 (1081)
17 PF14580 LRR_9: Leucine-rich r 99.2 3.7E-11 8E-16 82.8 6.1 110 36-155 16-127 (175)
18 PRK15387 E3 ubiquitin-protein 99.1 1E-10 2.3E-15 96.7 7.4 79 71-158 384-462 (788)
19 KOG1259 Nischarin, modulator o 99.1 4.4E-12 9.6E-17 93.0 -0.9 132 16-160 285-417 (490)
20 PLN03210 Resistant to P. syrin 99.1 4.5E-10 9.8E-15 97.6 10.5 57 93-151 779-835 (1153)
21 PF13855 LRR_8: Leucine rich r 99.1 6.9E-11 1.5E-15 67.7 3.7 61 92-153 1-61 (61)
22 cd00116 LRR_RI Leucine-rich re 99.1 6.6E-11 1.4E-15 89.0 3.4 36 17-52 110-150 (319)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.2E-11 9.1E-16 90.1 2.2 134 15-155 81-235 (319)
24 KOG0532 Leucine-rich repeat (L 99.1 7.5E-12 1.6E-16 98.2 -1.9 130 17-159 123-252 (722)
25 PLN03210 Resistant to P. syrin 99.0 2.1E-09 4.4E-14 93.5 10.9 132 16-158 590-721 (1153)
26 KOG0532 Leucine-rich repeat (L 99.0 2.2E-12 4.7E-17 101.1 -6.9 131 20-164 103-234 (722)
27 PRK15370 E3 ubiquitin-protein 99.0 6.8E-10 1.5E-14 92.0 6.2 55 93-154 326-380 (754)
28 PRK15370 E3 ubiquitin-protein 99.0 1.2E-09 2.7E-14 90.5 6.5 97 16-130 200-296 (754)
29 KOG4237 Extracellular matrix p 99.0 6.8E-11 1.5E-15 89.3 -1.1 133 19-162 50-184 (498)
30 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 62.6 3.7 59 16-80 2-60 (61)
31 COG4886 Leucine-rich repeat (L 98.8 2.8E-09 6.2E-14 82.7 3.9 131 16-158 141-294 (394)
32 PRK15387 E3 ubiquitin-protein 98.8 2.4E-08 5.3E-13 82.9 8.9 33 16-52 223-255 (788)
33 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 79.8 1.0 108 35-154 280-387 (490)
34 COG4886 Leucine-rich repeat (L 98.6 1.9E-08 4E-13 78.2 3.3 103 16-128 117-220 (394)
35 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3.1E-14 87.9 -7.0 126 16-154 165-292 (1096)
36 KOG3207 Beta-tubulin folding c 98.4 4.6E-08 1E-12 75.0 -0.1 80 73-154 201-284 (505)
37 KOG1859 Leucine-rich repeat pr 98.4 4E-08 8.7E-13 79.8 -0.6 81 70-155 188-268 (1096)
38 KOG4658 Apoptotic ATPase [Sign 98.4 2.2E-07 4.8E-12 78.6 3.5 106 16-128 546-653 (889)
39 KOG4579 Leucine-rich repeat (L 98.3 3E-08 6.5E-13 65.1 -2.2 102 19-130 31-136 (177)
40 PF12799 LRR_4: Leucine Rich r 98.3 6.7E-07 1.5E-11 47.4 3.3 36 118-154 2-37 (44)
41 KOG1909 Ran GTPase-activating 98.2 2.8E-07 6.1E-12 68.9 0.8 139 16-154 93-254 (382)
42 KOG0531 Protein phosphatase 1, 98.2 2.4E-07 5.3E-12 72.6 -0.4 123 19-154 76-199 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.2 2.4E-06 5.3E-11 72.4 5.4 127 16-152 524-653 (889)
44 KOG3207 Beta-tubulin folding c 98.2 3.8E-07 8.2E-12 70.1 0.4 83 72-154 249-339 (505)
45 PF12799 LRR_4: Leucine Rich r 98.1 3.9E-06 8.5E-11 44.4 3.3 36 16-52 2-37 (44)
46 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.3E-12 62.6 -3.6 110 41-158 29-139 (177)
47 KOG0531 Protein phosphatase 1, 98.1 6.6E-07 1.4E-11 70.1 0.1 105 14-130 94-199 (414)
48 KOG2120 SCF ubiquitin ligase, 97.8 5.9E-07 1.3E-11 66.3 -4.6 131 16-152 211-349 (419)
49 KOG1644 U2-associated snRNP A' 97.7 6E-05 1.3E-09 52.8 4.6 122 18-150 22-149 (233)
50 KOG1909 Ran GTPase-activating 97.6 2.7E-05 5.9E-10 58.5 1.9 132 16-153 158-310 (382)
51 KOG1644 U2-associated snRNP A' 97.5 0.00019 4E-09 50.4 4.6 103 16-127 43-150 (233)
52 KOG2123 Uncharacterized conser 97.5 6.5E-06 1.4E-10 60.4 -2.9 98 16-123 20-123 (388)
53 KOG3665 ZYG-1-like serine/thre 97.5 5.9E-05 1.3E-09 62.7 2.1 133 15-155 122-264 (699)
54 COG5238 RNA1 Ran GTPase-activa 97.5 0.00022 4.8E-09 52.4 4.7 137 15-154 92-255 (388)
55 KOG2982 Uncharacterized conser 97.4 1.9E-05 4E-10 58.6 -2.0 45 114-158 221-266 (418)
56 PF13306 LRR_5: Leucine rich r 97.2 0.0021 4.5E-08 41.8 6.9 104 35-150 8-112 (129)
57 PF13306 LRR_5: Leucine rich r 97.2 0.0021 4.5E-08 41.7 6.8 115 16-143 13-128 (129)
58 KOG2120 SCF ubiquitin ligase, 97.2 5.5E-05 1.2E-09 56.2 -1.1 127 15-150 234-372 (419)
59 PRK15386 type III secretion pr 97.1 0.0036 7.7E-08 49.0 8.2 53 15-79 52-104 (426)
60 KOG2739 Leucine-rich acidic nu 97.0 0.00048 1E-08 50.0 2.2 107 31-147 35-149 (260)
61 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.5E-08 55.2 2.5 113 13-134 146-267 (699)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00075 1.6E-08 49.0 1.2 101 17-125 45-151 (260)
63 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 54.2 -4.0 80 74-157 24-104 (388)
64 PF00560 LRR_1: Leucine Rich R 96.5 0.0014 3E-08 29.1 1.1 18 41-59 2-19 (22)
65 KOG2982 Uncharacterized conser 96.5 0.0008 1.7E-08 50.2 0.4 84 38-127 70-156 (418)
66 PRK15386 type III secretion pr 96.2 0.017 3.7E-07 45.3 6.3 56 35-102 48-104 (426)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.0037 8.1E-08 27.6 1.5 12 119-130 2-13 (22)
68 COG5238 RNA1 Ran GTPase-activa 95.7 0.04 8.6E-07 40.9 6.0 16 139-154 212-227 (388)
69 PF08263 LRRNT_2: Leucine rich 94.4 0.024 5.2E-07 29.5 1.3 16 1-16 26-43 (43)
70 PF13504 LRR_7: Leucine rich r 94.3 0.042 9.1E-07 22.6 1.6 13 40-52 2-14 (17)
71 KOG3864 Uncharacterized conser 93.8 0.0062 1.4E-07 42.9 -2.2 80 71-150 103-185 (221)
72 smart00369 LRR_TYP Leucine-ric 93.7 0.062 1.3E-06 24.5 1.9 19 92-111 2-20 (26)
73 smart00370 LRR Leucine-rich re 93.7 0.062 1.3E-06 24.5 1.9 19 92-111 2-20 (26)
74 PF13516 LRR_6: Leucine Rich r 92.7 0.041 8.9E-07 24.6 0.4 15 117-131 2-16 (24)
75 KOG0473 Leucine-rich repeat pr 90.7 0.0034 7.3E-08 45.4 -6.6 76 75-153 48-123 (326)
76 KOG1947 Leucine rich repeat pr 90.4 0.046 9.9E-07 43.3 -1.4 38 91-128 268-306 (482)
77 KOG0473 Leucine-rich repeat pr 83.1 0.015 3.2E-07 42.2 -7.0 88 34-130 37-124 (326)
78 smart00364 LRR_BAC Leucine-ric 83.0 0.88 1.9E-05 20.9 1.2 17 93-110 3-19 (26)
79 KOG1947 Leucine rich repeat pr 82.9 0.64 1.4E-05 36.8 1.3 111 37-153 186-307 (482)
80 smart00365 LRR_SD22 Leucine-ri 80.0 1.8 3.8E-05 19.9 1.7 14 39-52 2-15 (26)
81 smart00368 LRR_RI Leucine rich 77.9 2.1 4.5E-05 19.8 1.6 14 39-52 2-15 (28)
82 KOG3763 mRNA export factor TAP 74.9 1.8 3.9E-05 35.3 1.5 31 72-102 221-254 (585)
83 KOG4308 LRR-containing protein 64.3 0.049 1.1E-06 43.8 -9.2 34 120-153 265-302 (478)
84 KOG3864 Uncharacterized conser 54.6 1.6 3.5E-05 31.1 -2.0 35 91-126 150-185 (221)
85 TIGR00864 PCC polycystin catio 54.1 8.7 0.00019 37.6 1.9 31 75-105 1-32 (2740)
86 smart00367 LRR_CC Leucine-rich 45.6 14 0.0003 16.4 1.1 12 116-127 1-12 (26)
87 KOG3763 mRNA export factor TAP 41.6 12 0.00026 30.8 0.8 62 91-155 217-284 (585)
88 TIGR00864 PCC polycystin catio 40.0 17 0.00037 35.8 1.5 32 45-82 1-32 (2740)
89 KOG4341 F-box protein containi 26.2 5.5 0.00012 31.7 -3.2 81 17-103 140-227 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.2e-22 Score=169.78 Aligned_cols=157 Identities=31% Similarity=0.489 Sum_probs=119.7
Q ss_pred CCCCCCCCCccccee----ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceec------
Q 038012 1 WNQRRDFSDWNNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFI------ 69 (171)
Q Consensus 1 w~~~~~~~~~~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~------ 69 (171)
|+.++++|.|.|+.| +++.|++++|.+.+.++..+..++.|+.|++++|.+++.+|..+. .+.+|++|+
T Consensus 51 w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 51 WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence 877889999999998 488999999999988888899999999999999999888887654 777777665
Q ss_pred ----------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhh
Q 038012 70 ----------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138 (171)
Q Consensus 70 ----------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 138 (171)
+|++|++++|.+++..+. ++.+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..|..++
T Consensus 131 ~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred ccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHc
Confidence 466777777777665555 7777777777777777766666663 6677777777777766666666666
Q ss_pred CCCCCcEEEccccccccccC
Q 038012 139 ELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 139 ~l~~L~~L~l~~n~l~~~~p 158 (171)
.+++|++|++++|.+.+.+|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcCCccEEECcCCccCCcCC
Confidence 66666666666666666555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.3e-18 Score=145.48 Aligned_cols=143 Identities=34% Similarity=0.485 Sum_probs=76.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF 76 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l 76 (171)
.++++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|+ +|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 3455566666666555566666666666666666666666666666666665332 2334444
Q ss_pred ecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
++|.+++..|. ++.+++|++|++++|.+.+.+|..+ +.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 44444443333 4444555555555555444444442 555555555555555544445555555555555555555554
Q ss_pred ccC
Q 038012 156 QIT 158 (171)
Q Consensus 156 ~~p 158 (171)
.+|
T Consensus 299 ~~p 301 (968)
T PLN00113 299 EIP 301 (968)
T ss_pred CCC
Confidence 444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1e-18 Score=118.00 Aligned_cols=145 Identities=19% Similarity=0.332 Sum_probs=110.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEeec
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFSN 78 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~~ 78 (171)
+++.|.+++|.++. +|+.++.+.+|++|++.+|+++ .+|.+++.++.|+.|. .|+.+|+++
T Consensus 34 ~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 56777888888774 5667778888888888888887 5777777777776443 344666666
Q ss_pred ccccc-cCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 79 NIFSG-AIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 79 n~~~~-~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|++.. ..|. +..++.|+.+.++.|.+. .+|..+ +++++|++|.+..|.+- .+|.+++.+..|++|++++|++.-.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv-g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV-GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh-hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec
Confidence 66653 3333 666666777777777776 688887 99999999999999887 7899999999999999999999877
Q ss_pred cCCCCCCCc
Q 038012 157 ITKFSNAST 165 (171)
Q Consensus 157 ~p~~~~~~~ 165 (171)
+|+++++..
T Consensus 189 ppel~~l~l 197 (264)
T KOG0617|consen 189 PPELANLDL 197 (264)
T ss_pred Chhhhhhhh
Confidence 778776653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=4.5e-17 Score=127.35 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=92.3
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS 77 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~ 77 (171)
++++|+|..|.+...-...+.++++|+.|++++|.|....++++..+++|++|+ .|+.|+|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 455566666665544444455556666666666655555555555555555443 34456777
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCC--hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS--TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|+++.+... +..+++|+.|++++|.+.+.+.+ ..|..+++|+.|++.||++......+|..+++|++|++.+|.|.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 7777765555 67777777777877777754443 33667778888888888887555567888888888888888876
Q ss_pred cccC
Q 038012 155 GQIT 158 (171)
Q Consensus 155 ~~~p 158 (171)
..-|
T Consensus 430 SIq~ 433 (873)
T KOG4194|consen 430 SIQP 433 (873)
T ss_pred eecc
Confidence 4443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-16 Score=124.84 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=68.5
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------- 69 (171)
+++.|+|++|.++..-..+|..+.+|..|.|+.|.++...+..|.++++|+.|+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 455566666665544444455555555555555555543334444455555444
Q ss_pred ----------------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 70 ----------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 70 ----------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
++++++|+.|++..+-.. +.++++|+.|+++.|.|...-++. |..+++|+.|+++.|+++..
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccC
Confidence 445555555555554444 455555555555555554222222 35555555555555555543
Q ss_pred cChhhhCCCCCcEEEccccc
Q 038012 133 ISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~ 152 (171)
.++.|..+..|++|.++.|+
T Consensus 333 ~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ChhHHHHHHHhhhhcccccc
Confidence 33334444444444443333
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=8.4e-18 Score=113.62 Aligned_cols=122 Identities=24% Similarity=0.386 Sum_probs=103.0
Q ss_pred cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhh
Q 038012 34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPW 113 (171)
Q Consensus 34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~ 113 (171)
.+..+..++.|.+++|.++ .+|+.+..+.+|+ .+++.+|+++..+..++.+++|++++++-|++. .+|.. |
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nle------vln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprg-f 98 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLE------VLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRG-F 98 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhh------hhhcccchhhhcChhhhhchhhhheecchhhhh-cCccc-c
Confidence 4568899999999999998 6788788888777 669999999998888999999999999999997 78888 6
Q ss_pred hcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccCCCCCCC
Q 038012 114 EQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQITKFSNAS 164 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 164 (171)
+.++.|+.||+..|++.. .+|+.|..+..|+.|++++|-+.-.+|+.+.++
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt 150 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT 150 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc
Confidence 999999999999988753 678888888888888888887775666776665
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=2.4e-14 Score=116.59 Aligned_cols=116 Identities=28% Similarity=0.436 Sum_probs=91.9
Q ss_pred Ccccceec---------eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc
Q 038012 9 DWNNVRCD---------KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79 (171)
Q Consensus 9 ~~~~~~~~---------l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n 79 (171)
.|.|+.|. ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..++.|+ .|++++|
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~------~LdLs~N 476 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------VLDLSYN 476 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC------EEECCCC
Confidence 69999993 66788888888888888888888888888888888888888888888777 5588888
Q ss_pred cccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 80 IFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 80 ~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
.+++..|. ++.+++|++|++++|.+.|.+|..+.....++..+++.+|...
T Consensus 477 ~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 88887777 8888888888888888888888775222345667777777544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=2.6e-15 Score=118.89 Aligned_cols=140 Identities=26% Similarity=0.336 Sum_probs=106.4
Q ss_pred cceeceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------------
Q 038012 12 NVRCDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------- 69 (171)
Q Consensus 12 ~~~~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------- 69 (171)
||++-++.+|+++|.++ +.+|.....|+.++.|.|...++. .+|+.++.+.+|..|.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 56666777888888887 446666666777777666666665 4565555555444333
Q ss_pred ---------------------cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012 70 ---------------------SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS 128 (171)
Q Consensus 70 ---------------------~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~ 128 (171)
+|+.+|+|+|++..++..+..-+++..|++++|.|. .+|..+|-++..|-+||++.|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 577888888888887666777788888889988886 8888888888888888999988
Q ss_pred eecccChhhhCCCCCcEEEccccccc
Q 038012 129 LNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+. .+|..+..+..|++|.+++|++.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 87 67888888888888999888765
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=1e-14 Score=109.99 Aligned_cols=138 Identities=28% Similarity=0.387 Sum_probs=111.8
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------------
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------------- 69 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------------- 69 (171)
+++.+||++.|.+++ .|..+..+.+|+.||+++|.++ .+|.+++++ +|+.|.
T Consensus 252 ~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred ccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 367789999999986 7888888899999999999998 578888887 666665
Q ss_pred --------------------------------------------------------------------------------
Q 038012 70 -------------------------------------------------------------------------------- 69 (171)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (171)
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence
Q ss_pred ---------------------------cccEEEeecccccccCCCCcCCCCccEEEccCCccccc---------------
Q 038012 70 ---------------------------SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGV--------------- 107 (171)
Q Consensus 70 ---------------------------~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~--------------- 107 (171)
+|++|++++|.+...+.+++.+..|+.++++.|++. .
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL 487 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence 688999999988887767888888999999988764 3
Q ss_pred --------CCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 108 --------ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 108 --------l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++..-.+.+.+|..||+.+|.++ .+|..++++.+|++|.+.+|++. +++
T Consensus 488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCH
Confidence 33221367778889999999988 68889999999999999999987 444
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=1.7e-13 Score=103.11 Aligned_cols=142 Identities=27% Similarity=0.258 Sum_probs=100.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------- 69 (171)
..+.+.|..|.++...+.+|..+.+|++|+|+.|+|+...|.+|.++.++..|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567889999999987777888899999999999999988888888877665444
Q ss_pred --------------------------------------------------------------------------------
Q 038012 70 -------------------------------------------------------------------------------- 69 (171)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (171)
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence
Q ss_pred -------------------cccEE---EeecccccccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcc
Q 038012 70 -------------------SAIFM---DFSNNIFSGAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLS 125 (171)
Q Consensus 70 -------------------~l~~l---~l~~n~~~~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~ 125 (171)
.++.+ ..+.......-|. |+.+++|+.+++++|.++ .+.+..|..+.+++.|.+.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLT 306 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcC
Confidence 11111 0111222222232 677788888888888887 5555557777788888888
Q ss_pred cCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 126 NNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 126 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
.|++...--.+|.++..|++|++.+|+|+-..|
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 887776556677777888888888888775555
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=6.9e-15 Score=110.83 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=101.9
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEE
Q 038012 18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHL 97 (171)
Q Consensus 18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l 97 (171)
..+++.+|.+....|+.+. |+.|+.++...|-++ .+|+.++.+.+|. .+++..|++...+ +|..|..|..+
T Consensus 163 ~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~------~LyL~~Nki~~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLE------LLYLRRNKIRFLP-EFPGCSLLKEL 233 (565)
T ss_pred HHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhH------HHHhhhcccccCC-CCCccHHHHHH
Confidence 3445555555543333333 555555555555554 4555555555555 5588888887644 78888888888
Q ss_pred EccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccc
Q 038012 98 DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAI 168 (171)
Q Consensus 98 ~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L 168 (171)
.++.|.+. .+|++....+.++..||+..|+++ +.|.++..+.+|..||+++|.+++..++.++++...|
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L 302 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFL 302 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccceeeeh
Confidence 88888887 788887678889999999999998 7899999999999999999999988888888865443
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=5.1e-12 Score=103.15 Aligned_cols=112 Identities=29% Similarity=0.357 Sum_probs=96.2
Q ss_pred CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012 40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN 118 (171)
Q Consensus 40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~ 118 (171)
.++.|+|++|.+.+.+|..+..+++|+ .|++++|.+++..|. ++.++.|+.|++++|.+.|.+|..+ +.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~------~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQ------SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCC------EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCC
Confidence 378899999999999999998888888 669999999988776 9999999999999999998899885 99999
Q ss_pred CcEEEcccCeeecccChhhhCC-CCCcEEEccccccccccC
Q 038012 119 LVFVDLSNNSLNGNISLFLFEL-SMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 119 L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p 158 (171)
|+.|++++|.+.+.+|..+... .++..+++.+|......|
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999888764 467788888886444444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.30 E-value=1.2e-13 Score=109.58 Aligned_cols=82 Identities=28% Similarity=0.304 Sum_probs=55.8
Q ss_pred cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012 70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 149 (171)
+|.-+|+|.|.+..++..+..+.+|+.|++++|.++ .+.... +...+++.|+++.|+++ .+|.++.+++.|+.|++.
T Consensus 223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 455666666766655444666677777777777776 565554 66667777777777776 667777777777777777
Q ss_pred ccccc
Q 038012 150 DNQFD 154 (171)
Q Consensus 150 ~n~l~ 154 (171)
+|.+.
T Consensus 300 ~NkL~ 304 (1255)
T KOG0444|consen 300 NNKLT 304 (1255)
T ss_pred cCccc
Confidence 77654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=1.9e-13 Score=111.72 Aligned_cols=82 Identities=27% Similarity=0.275 Sum_probs=41.8
Q ss_pred cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012 70 SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 148 (171)
+|+.|+|++|++...+.. +.++..|+.|++++|.++ .+|..+ ..++.|+.|...+|.+. .+| ++..++.|+.+|+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv-a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV-ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH-HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 345555555555443333 445555555555555554 444443 44444444444444443 344 5566666666666
Q ss_pred ccccccc
Q 038012 149 ADNQFDG 155 (171)
Q Consensus 149 ~~n~l~~ 155 (171)
+.|.+..
T Consensus 460 S~N~L~~ 466 (1081)
T KOG0618|consen 460 SCNNLSE 466 (1081)
T ss_pred ccchhhh
Confidence 6666553
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=9.9e-12 Score=85.66 Aligned_cols=121 Identities=26% Similarity=0.322 Sum_probs=30.9
Q ss_pred eeEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCc
Q 038012 17 KAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNL 94 (171)
Q Consensus 17 l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L 94 (171)
++.|++++|.++. + +.+. .+.+|++|++++|.++. ++ .+..++.|+ .|++++|+++.+.+.+ ..+++|
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~------~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLK------TLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---T-T----TT--------EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhh------hcccCCCCCCccccchHHhCCcC
Confidence 4555666665553 1 2232 34555666666665552 21 233333333 4455666655443222 235555
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEE
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQ 147 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~ 147 (171)
+.|++++|.+.+.-.-..+..+++|+.|++.+|.+.... ...+..+|+|+.||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 566666665542111111245555555665555554221 11244555555555
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=9.2e-13 Score=107.84 Aligned_cols=135 Identities=24% Similarity=0.235 Sum_probs=109.7
Q ss_pred CCcccceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceeccccEEEeecccccccCC
Q 038012 8 SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFISAIFMDFSNNIFSGAIP 86 (171)
Q Consensus 8 ~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~~l~~l~l~~n~~~~~~~ 86 (171)
|+=+...+.++.|.+.+|.+++..-+.+.++++|++|+|++|.+. .+|. .+.++..|+ .|++|+|+++.++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le------eL~LSGNkL~~Lp~ 424 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE------ELNLSGNKLTTLPD 424 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH------HHhcccchhhhhhH
Confidence 333555667888999999999888888999999999999999998 4554 555666666 66999999998775
Q ss_pred CCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012 87 YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 87 ~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
.+..+..|++|...+|.+. .+| + +..++.|+.+|++.|.++...-.+....++|++||+++|.
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-h-hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5899999999999999998 888 5 3999999999999999885433333333899999999997
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=3.7e-11 Score=82.84 Aligned_cols=110 Identities=34% Similarity=0.298 Sum_probs=43.2
Q ss_pred cCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012 36 ANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE 114 (171)
Q Consensus 36 ~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~ 114 (171)
-+...+++|++++|.|+. + +.++ .+.+++ .|++++|.++.+ ..+..++.|+.|++++|.++ .++..+..
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~------~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLE------VLDLSNNQITKL-EGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--------EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccc-c-cchhhhhcCCC------EEECCCCCCccc-cCccChhhhhhcccCCCCCC-ccccchHH
Confidence 345578999999999983 2 2343 345555 779999999875 35888999999999999998 67655435
Q ss_pred cCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEcccccccc
Q 038012 115 QLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 115 ~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
.+++|+.|++++|++.... -..+..+++|+.|++.+|++..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 7999999999999997532 2467789999999999999974
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.15 E-value=1e-10 Score=96.66 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=54.5
Q ss_pred ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012 71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150 (171)
Q Consensus 71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (171)
|+.|++++|.++.++.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|..+..+++|+.+++++
T Consensus 384 L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTSLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccCCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 44555555555543221 245666777777766 45543 235677888888887 6788899999999999999
Q ss_pred cccccccC
Q 038012 151 NQFDGQIT 158 (171)
Q Consensus 151 n~l~~~~p 158 (171)
|++.+.+|
T Consensus 455 N~Ls~~~~ 462 (788)
T PRK15387 455 NPLSERTL 462 (788)
T ss_pred CCCCchHH
Confidence 99998765
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=4.4e-12 Score=92.98 Aligned_cols=132 Identities=23% Similarity=0.384 Sum_probs=101.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
.++++|+++|.++. +.+++.-.+.++.|++++|.+. .+.. +..+++|+ .||+++|.++....--..+-++.
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~------~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQ------LLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccce------EeecccchhHhhhhhHhhhcCEe
Confidence 47789999999985 7888888899999999999997 3322 45555555 77999999886543244556788
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccCCC
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQITKF 160 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~ 160 (171)
.|.++.|.+. .+. . .+.+.+|..||+++|++...- -..++++|-|+++.+.+|++.+ +|++
T Consensus 356 tL~La~N~iE-~LS-G-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY 417 (490)
T KOG1259|consen 356 TLKLAQNKIE-TLS-G-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVDY 417 (490)
T ss_pred eeehhhhhHh-hhh-h-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cchH
Confidence 8899999986 343 3 388889999999999998532 3468999999999999999974 4443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.13 E-value=4.5e-10 Score=97.56 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=25.8
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
+|+.|++++|.....+|..+ +.+++|+.|++++|...+.+|..+ .+++|+.|++++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 34445555444333455553 555555555555543222333332 3344444444443
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=6.9e-11 Score=67.66 Aligned_cols=61 Identities=41% Similarity=0.474 Sum_probs=44.2
Q ss_pred CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
++|+++++++|.++ .+|...|..+++|+.+++++|+++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777776 66665567777777777777777766666777777777777777764
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=6.6e-11 Score=89.01 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=20.7
Q ss_pred eeEEEeecCCCcc----cccccccCC-CCCcEEEecCCCcC
Q 038012 17 KAVFSLAQYFLSG----PIHPSLANL-QSLSEIYLDNINLS 52 (171)
Q Consensus 17 l~~L~l~~n~~~~----~~~~~~~~~-~~L~~L~l~~n~l~ 52 (171)
+++|++++|.+.+ .+...+..+ ++|+.|++++|.++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 6666666666652 122334444 56666666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=4.2e-11 Score=90.09 Aligned_cols=134 Identities=27% Similarity=0.348 Sum_probs=78.7
Q ss_pred eceeEEEeecCCCcccccccccCCCC---CcEEEecCCCcCCc----cchhhhcC-CCcceeccccEEEeecccccccC-
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQS---LSEIYLDNINLSST----IPEFLADF-SNLTSFISAIFMDFSNNIFSGAI- 85 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~~l~~l~l~~n~~~~~~- 85 (171)
.+++.|++++|.+.+..+..+..+.. |+.|++++|.+++. +...+..+ +.++ .+++++|.+++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~------~L~L~~n~l~~~~~ 154 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE------KLVLGRNRLEGASC 154 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce------EEEcCCCcCCchHH
Confidence 47778888888876545555544444 88888888877631 22233344 5555 5577777766311
Q ss_pred ---CC-CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccc
Q 038012 86 ---PY-LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 86 ---~~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l 153 (171)
.. +..+++++++++++|.+.+. ++.. +..+++|+.|++++|.+.+. +...+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 11 45556677777777776532 1222 23445777777777766532 223344566677777777766
Q ss_pred cc
Q 038012 154 DG 155 (171)
Q Consensus 154 ~~ 155 (171)
.+
T Consensus 234 ~~ 235 (319)
T cd00116 234 TD 235 (319)
T ss_pred ch
Confidence 53
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=7.5e-12 Score=98.15 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=95.0
Q ss_pred eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccE
Q 038012 17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTH 96 (171)
Q Consensus 17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~ 96 (171)
+..++++.|.++. +|..+..++ |++|.+++|+++ .+|+.++.+..+. .+|.+.|.+..++++++.+.+|+.
T Consensus 123 lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~------~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 123 LTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLA------HLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred HHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHH------HhhhhhhhhhhchHHhhhHHHHHH
Confidence 4456666666663 455554333 667777777766 5666665555555 557788887777666888888888
Q ss_pred EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
+++..|.+. .+|.+. . .-.|..||++.|++. .+|..|.+|..|++|-|.+|++...+.+
T Consensus 194 l~vrRn~l~-~lp~El-~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 194 LNVRRNHLE-DLPEEL-C-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred HHHhhhhhh-hCCHHH-h-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 888888887 678875 5 556889999999998 7899999999999999999999744333
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=2.1e-09 Score=93.54 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=73.6
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
+++.|.+.++.+.. +|..+ ...+|+.|++.+|.+. .++..+..++.|+ .++++++......|.++.+++|+
T Consensus 590 ~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk------~L~Ls~~~~l~~ip~ls~l~~Le 660 (1153)
T PLN03210 590 KLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLR------NIDLRGSKNLKEIPDLSMATNLE 660 (1153)
T ss_pred ccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCC------EEECCCCCCcCcCCccccCCccc
Confidence 45566666665543 45444 4566777777777665 4555555555555 44666554333344455666666
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
.|++++|.....+|..+ +.+.+|+.|++++|.....+|..+ ++++|+.|++++|...+.+|
T Consensus 661 ~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred EEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 66666655444566664 666666666666653333444433 45555555555554333333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2.2e-12 Score=101.07 Aligned_cols=131 Identities=26% Similarity=0.367 Sum_probs=85.7
Q ss_pred EEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEc
Q 038012 20 FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDL 99 (171)
Q Consensus 20 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l 99 (171)
+.+..|.+. .+|+++..+..|+.++++.|+++ .+|..++.++ |+ .+-+++|+++-.+.+++...+|..++.
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk------vli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK------VLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce------eEEEecCccccCCcccccchhHHHhhh
Confidence 334444443 24555555555555666666555 4555444433 33 557778887766666777778888888
Q ss_pred cCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCCCC
Q 038012 100 SNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSNAS 164 (171)
Q Consensus 100 ~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~ 164 (171)
+.|++. .+|..+ +.+.+|+.+.+..|.+. .+|.++..++ |..||++.|.+. .+| .|+.+.
T Consensus 174 s~nei~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~ 234 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMR 234 (722)
T ss_pred hhhhhh-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhh
Confidence 888887 777775 77888888888888777 4677766554 677888888887 444 666554
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.00 E-value=6.8e-10 Score=92.02 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=28.2
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|+.|++++|.++ .+|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|.+.
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 4455555555554 344432 245566666666655 344433 245666666666655
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.97 E-value=1.2e-09 Score=90.51 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=46.4
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
.++.|++++|.++. +|..+. .+|+.|++++|.++ .+|..+. ..|+ .|++++|.+..++..+. ..|+
T Consensus 200 ~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~------~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 200 QITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQ------EMELSINRITELPERLP--SALQ 265 (754)
T ss_pred CCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--cccc------EEECcCCccCcCChhHh--CCCC
Confidence 45566666666663 444332 35666666666665 3444332 1233 34555555543322221 2455
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
.|++++|.+. .+|..+ ..+|+.|++++|+++
T Consensus 266 ~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 266 SLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR 296 (754)
T ss_pred EEECcCCccC-cccccc---CCCCcEEECCCCccc
Confidence 5555555554 344432 124455555555444
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=6.8e-11 Score=89.28 Aligned_cols=133 Identities=27% Similarity=0.232 Sum_probs=107.2
Q ss_pred EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEE
Q 038012 19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHL 97 (171)
Q Consensus 19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l 97 (171)
.++.++-++++ +|..+ -+....+.|+.|+|+...+.+|+.+++|+ .+||++|.|+.+.|. +..++.+..+
T Consensus 50 ~VdCr~~GL~e-VP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LR------rLdLS~N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 50 IVDCRGKGLTE-VPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLR------RLDLSKNNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred eEEccCCCccc-CcccC--CCcceEEEeccCCcccCChhhccchhhhc------eecccccchhhcChHhhhhhHhhhHH
Confidence 46777777775 55432 24567889999999976667888888888 559999999999888 8888876665
Q ss_pred Ec-cCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCC
Q 038012 98 DL-SNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSN 162 (171)
Q Consensus 98 ~l-~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 162 (171)
-+ ++|+|+ .+|...|+++.+++.|.+.-|++......+|.+++++..|.+-+|.+. .++...+
T Consensus 121 vlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf 184 (498)
T KOG4237|consen 121 VLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF 184 (498)
T ss_pred HhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccc
Confidence 55 559998 899988999999999999999999888889999999999999998875 5554333
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=1.1e-09 Score=62.62 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=33.4
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~ 80 (171)
++++|++++|.+....+..|.++++|++|++++|.++...+..|.++++|+ ++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~------~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLR------YLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTES------EEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCC------EEeCcCCc
Confidence 355666666666554444555666666666666666544445555555555 44555554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=2.8e-09 Score=82.73 Aligned_cols=131 Identities=33% Similarity=0.458 Sum_probs=71.5
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
+++.|++++|.+.. +|..+..++.|+.|+++.|+++ .+|.....++.+. .+++++|+++.+++.+.....|.
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~------~L~ls~N~i~~l~~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN------NLDLSGNKISDLPPEIELLSALE 212 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhh------heeccCCccccCchhhhhhhhhh
Confidence 56666666666654 4445566666666666666666 3444433444454 44566666555443333334455
Q ss_pred EEEccCC-----------------------cccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012 96 HLDLSNN-----------------------LLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 96 ~l~l~~n-----------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
.+.+++| .+. .++..+ +.+.+++.+++++|.+.. ++. ++.+.+++.+++++|.
T Consensus 213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~-~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESI-GNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred hhhhcCCcceecchhhhhcccccccccCCceee-eccchh-ccccccceeccccccccc-ccc-ccccCccCEEeccCcc
Confidence 5555555 333 223332 555556666666666653 222 5566666666666666
Q ss_pred cccccC
Q 038012 153 FDGQIT 158 (171)
Q Consensus 153 l~~~~p 158 (171)
+...+|
T Consensus 289 ~~~~~~ 294 (394)
T COG4886 289 LSNALP 294 (394)
T ss_pred ccccch
Confidence 554444
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=2.4e-08 Score=82.92 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=19.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLS 52 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 52 (171)
+++.|++++|.++. +|. ..++|+.|++++|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC
Confidence 45556666666553 332 2456666677766666
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.6e-09 Score=79.76 Aligned_cols=108 Identities=28% Similarity=0.235 Sum_probs=89.9
Q ss_pred ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012 35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE 114 (171)
Q Consensus 35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~ 114 (171)
+..++.|+++++++|.|+ .+.++..-+|.++ +|++++|.+..+.. +..+++|+.|++++|.++ .+..+. .
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir------~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh-~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLR------RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWH-L 349 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhcccee------EEeccccceeeehh-hhhcccceEeecccchhH-hhhhhH-h
Confidence 445677899999999998 6777777777777 67999999987543 888899999999999998 666664 8
Q ss_pred cCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 115 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
.+.+++.|.+++|.+.. -..+.++-+|..||+++|+|.
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence 89999999999998873 345678889999999999986
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.9e-08 Score=78.20 Aligned_cols=103 Identities=32% Similarity=0.405 Sum_probs=69.3
Q ss_pred ceeEEEeecCCCcccccccccCCC-CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQ-SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.++.+++..|.++. ++.....+. +|+.|++++|.+. .+|..+..++.|+ .|+++.|+++.+++..+..+.|
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~------~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK------NLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhcccccc------ccccCCchhhhhhhhhhhhhhh
Confidence 46677777777775 555555553 7888888888776 4555555666666 5578888887765555577778
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS 128 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~ 128 (171)
..+++++|.+. .+|..+ .....|+.+.+++|.
T Consensus 189 ~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCCccc-cCchhh-hhhhhhhhhhhcCCc
Confidence 88888888887 666653 445556666666663
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.4e-09 Score=87.94 Aligned_cols=126 Identities=29% Similarity=0.251 Sum_probs=95.2
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
.+.+.+++.|.+.- +..++..++.++.|+|++|+++.. ..+..+++|+ +||++.|.+..++.- ...++ |
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~Lk------hLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLK------HLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhccccc------ccccccchhccccccchhhhh-h
Confidence 45667888888874 677888899999999999999842 2556666666 779999999876443 34444 9
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+.|.+++|.++ .+ ..+ .++++|+.||++.|-+.+- --..++.+..|+.|++.+|++.
T Consensus 235 ~~L~lrnN~l~-tL-~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALT-TL-RGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHH-hh-hhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999987 43 343 8899999999999987642 2234566778899999999875
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.6e-08 Score=75.02 Aligned_cols=80 Identities=23% Similarity=0.144 Sum_probs=37.3
Q ss_pred EEEeecccccccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC--hhhhCCCCCcEEEc
Q 038012 73 FMDFSNNIFSGAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS--LFLFELSMLQRLQL 148 (171)
Q Consensus 73 ~l~l~~n~~~~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l 148 (171)
.|.++.+.++...-. ...++++..|++..|.....-... ...++.|+.|++++|.+.. .+ ...+.++.|+.|.+
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc-cccccccccccchhhhhc
Confidence 445555555422111 344455555555555322111111 2444555666666665542 22 23455566666666
Q ss_pred cccccc
Q 038012 149 ADNQFD 154 (171)
Q Consensus 149 ~~n~l~ 154 (171)
+.+.+.
T Consensus 279 s~tgi~ 284 (505)
T KOG3207|consen 279 SSTGIA 284 (505)
T ss_pred cccCcc
Confidence 655543
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=4e-08 Score=79.81 Aligned_cols=81 Identities=28% Similarity=0.281 Sum_probs=61.6
Q ss_pred cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012 70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 149 (171)
.+++|||++|++..+. .+.-+.+|++|+++.|.++ .+|.-.-..|+ |+.|.+++|.++. -..+.++.+|++||++
T Consensus 188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLS 262 (1096)
T ss_pred HhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchh
Confidence 4678888888887654 5777888889999998887 66653324444 8888888888773 2456789999999999
Q ss_pred cccccc
Q 038012 150 DNQFDG 155 (171)
Q Consensus 150 ~n~l~~ 155 (171)
+|-+.+
T Consensus 263 yNll~~ 268 (1096)
T KOG1859|consen 263 YNLLSE 268 (1096)
T ss_pred Hhhhhc
Confidence 998764
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=2.2e-07 Score=78.55 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=63.3
Q ss_pred ceeEEEeecCC--CcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 16 DKAVFSLAQYF--LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
.+++|-+.+|. +.....+.|..|+.|++||+++|.--+.+|..++.+.+|+ +|++++..++..+..+++++.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr------yL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR------YLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh------cccccCCCccccchHHHHHHh
Confidence 35566666654 3332233355677777777776655456677766666666 457777776665555777777
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS 128 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~ 128 (171)
|++|++..+.....+|.. ...+.+|++|.+....
T Consensus 620 L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSA 653 (889)
T ss_pred hheeccccccccccccch-hhhcccccEEEeeccc
Confidence 777777666544233333 3556677777666543
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=3e-08 Score=65.13 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=66.5
Q ss_pred EEEeecCCCccccccc---ccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 19 VFSLAQYFLSGPIHPS---LANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 19 ~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.++++.|.+-. +++. +.....|+..++++|.+. ..|+.|. .++.++ .+++++|.++.++.++..++.|
T Consensus 31 ~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t------~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 31 FLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTAT------TLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred hcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhh------hhhcchhhhhhchHHHhhhHHh
Confidence 46666766542 3333 344455666678888776 4565554 334555 4577888887766667777888
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
+.++++.|.+. ..|.-+ ..+.++..|+..+|...
T Consensus 103 r~lNl~~N~l~-~~p~vi-~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVI-APLIKLDMLDSPENARA 136 (177)
T ss_pred hhcccccCccc-cchHHH-HHHHhHHHhcCCCCccc
Confidence 88888888776 666665 44777777777777665
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=6.7e-07 Score=47.42 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 118 NLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 118 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|++|++++|+++ .+|..++++++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 34555666667777777666665
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=2.8e-07 Score=68.92 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=87.9
Q ss_pred ceeEEEeecCCCccccccc----ccCCCCCcEEEecCCCcCCccchhhhc-CCCcc------eeccccEEEeeccccccc
Q 038012 16 DKAVFSLAQYFLSGPIHPS----LANLQSLSEIYLDNINLSSTIPEFLAD-FSNLT------SFISAIFMDFSNNIFSGA 84 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~------~L~~l~~l~l~~n~~~~~ 84 (171)
+++.++||.|.+....++. +.....|+.|+|.+|.+...-...++. +..|. .-..|+.++..+|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6888888888886443333 456778888888888876332223221 11111 001455778888887643
Q ss_pred CCC-----CcCCCCccEEEccCCccccc---CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEccccc
Q 038012 85 IPY-----LHILKNLTHLDLSNNLLTGV---ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 85 ~~~-----~~~l~~L~~l~l~~n~~~~~---l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~ 152 (171)
... +...+.|+.+.+..|.|.-. .-..-|..|++|+.||+..|.++.. +...+..++.|+.++++++.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 322 66677888888888877511 1112257788888888888888632 34456677788888888876
Q ss_pred cc
Q 038012 153 FD 154 (171)
Q Consensus 153 l~ 154 (171)
+.
T Consensus 253 l~ 254 (382)
T KOG1909|consen 253 LE 254 (382)
T ss_pred cc
Confidence 54
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2.4e-07 Score=72.58 Aligned_cols=123 Identities=32% Similarity=0.381 Sum_probs=60.3
Q ss_pred EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEE
Q 038012 19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLD 98 (171)
Q Consensus 19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~ 98 (171)
.+++..|.+.. .-..+..+++++.+++.+|.+.. +...+..+++|+ ++++++|.++.+. .+..++.|+.|+
T Consensus 76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~------~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQ------VLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred hhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcch------heecccccccccc-chhhccchhhhe
Confidence 33444444442 22234555666666666666652 222133344444 4466666665432 244444466666
Q ss_pred ccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccc
Q 038012 99 LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 99 l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 154 (171)
+++|.+. .+.. +..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666665 3333 2445556666666665553222 1 345555555555555543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.20 E-value=2.4e-06 Score=72.43 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=94.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCC--cCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN--LSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..+.+.+-+|.+.. ++... ..+.|++|-+.+|. +....++.|..++.|. .||+++|.--+..|. ++.+-
T Consensus 524 ~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr------VLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR------VLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred heeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceE------EEECCCCCccCcCChHHhhhh
Confidence 34556666666543 33332 33468888888885 4433344567788888 669998766555666 99999
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
+|++|+++...+. .+|..+ ++++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus 596 ~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999998 899996 999999999999887655667777789999999987654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.8e-07 Score=70.13 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=46.0
Q ss_pred cEEEeecccccccC--CCCcCCCCccEEEccCCcccc-cCCCh----hhhcCCCCcEEEcccCeeec-ccChhhhCCCCC
Q 038012 72 IFMDFSNNIFSGAI--PYLHILKNLTHLDLSNNLLTG-VISST----PWEQLLNLVFVDLSNNSLNG-NISLFLFELSML 143 (171)
Q Consensus 72 ~~l~l~~n~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~l~~~----~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L 143 (171)
+.|||++|++-... +..+.++.|..++++.+++.. .+|+. ....+.+|++|++..|++.. ..-..+..+++|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 35577777665543 226666777777777776651 11221 01345567777777776642 122344555666
Q ss_pred cEEEccccccc
Q 038012 144 QRLQLADNQFD 154 (171)
Q Consensus 144 ~~L~l~~n~l~ 154 (171)
++|.+..|.+.
T Consensus 329 k~l~~~~n~ln 339 (505)
T KOG3207|consen 329 KHLRITLNYLN 339 (505)
T ss_pred hhhhccccccc
Confidence 66666666654
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.9e-06 Score=44.45 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=23.2
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLS 52 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 52 (171)
++++|++++|.++. +|+.++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 46677777777764 5555677777777777777666
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.1e-07 Score=62.60 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=80.5
Q ss_pred CcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012 41 LSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119 (171)
Q Consensus 41 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L 119 (171)
+..++|+.|++- .+++....+.....+ +.+++++|.+...+++ -...+.++.+++++|.++ .+|.+ +..++.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el---~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYEL---TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPAL 102 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceE---EEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHh
Confidence 455677777774 455555544444432 4678899998887766 344468889999999998 78888 4889999
Q ss_pred cEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 120 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+.++++.|.+. ..|..+..+.++..|+..+|... .+|
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 99999999888 56777777888888887777654 444
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=6.6e-07 Score=70.14 Aligned_cols=105 Identities=26% Similarity=0.266 Sum_probs=78.5
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
..+++.+++.+|.+.. +...+..+.+|++|++++|.|+... .+..++.|+ .|++++|.++.. ..+..++.
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~------~L~l~~N~i~~~-~~~~~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK------ELNLSGNLISDI-SGLESLKS 163 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchh------hheeccCcchhc-cCCccchh
Confidence 3578899999999986 4433778999999999999998532 233445555 669999999864 34666889
Q ss_pred ccEEEccCCcccccCCCh-hhhcCCCCcEEEcccCeee
Q 038012 94 LTHLDLSNNLLTGVISST-PWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~-~~~~l~~L~~L~l~~n~~~ 130 (171)
|+.+++++|.+. .+... . ..+..++.+++.+|.+.
T Consensus 164 L~~l~l~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 164 LKLLDLSYNRIV-DIENDEL-SELISLEELDLGGNSIR 199 (414)
T ss_pred hhcccCCcchhh-hhhhhhh-hhccchHHHhccCCchh
Confidence 999999999998 44441 2 66777788888887765
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5.9e-07 Score=66.32 Aligned_cols=131 Identities=25% Similarity=0.263 Sum_probs=75.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCC-CcCCc-cchhhhcCCCcceeccccEEEeecccccccCCC--C-cC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI-NLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--L-HI 90 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~--~-~~ 90 (171)
+++.+.+.++.+.+.+...++....|+.|+++++ .++.. ..--+.+++.|. .|+++++.++..... + .-
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~------~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD------ELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh------hcCchHhhccchhhhHHHhhh
Confidence 3445555555555555555666666666666653 33311 111223444444 447777766532211 1 12
Q ss_pred CCCccEEEccCCccc--ccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEccccc
Q 038012 91 LKNLTHLDLSNNLLT--GVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 91 l~~L~~l~l~~n~~~--~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
-+++..|+++++.-. ...-+.+...|+++.+||++.+ .++.....+|.+++-|++|.++.+.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 256677777665422 1111223478889999999986 5665566678889999999988775
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=6e-05 Score=52.84 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=71.5
Q ss_pred eEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCcc
Q 038012 18 AVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNLT 95 (171)
Q Consensus 18 ~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L~ 95 (171)
+.+++.+..+.. ...++ -......+++++|.+.. + +.|..++.|. +|.+++|+++.+.+.+ ..++.+.
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~------tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLH------TLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchhh-c-ccCCCccccc------eEEecCCcceeeccchhhhccccc
Confidence 345665555432 11111 23455667777777752 1 2233444444 6688888888777763 3446788
Q ss_pred EEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEEccc
Q 038012 96 HLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQLAD 150 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~ 150 (171)
.|.+.+|.+. ++.+ .-...|+.|+.|.+-+|.+.... --.+..+++|+.||+++
T Consensus 92 ~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 92 TLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888888776 2221 11367778888887777765321 12355778888888765
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.63 E-value=2.7e-05 Score=58.54 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=89.1
Q ss_pred ceeEEEeecCCCccc----ccccccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceeccccEEEeecccccccC--
Q 038012 16 DKAVFSLAQYFLSGP----IHPSLANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI-- 85 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~-- 85 (171)
.++++...+|.+... +...+...+.|+.+-+..|.|... +-..|..+++|+ .||+.+|-|+...
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le------vLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE------VLDLRDNTFTLEGSV 231 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce------eeecccchhhhHHHH
Confidence 577778777776532 233455667788888887776521 223444555555 6799999987422
Q ss_pred --CC-CcCCCCccEEEccCCcccccCCChh----hhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccc
Q 038012 86 --PY-LHILKNLTHLDLSNNLLTGVISSTP----WEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 86 --~~-~~~l~~L~~l~l~~n~~~~~l~~~~----~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l 153 (171)
.. ++.+++|+.++++.|.+.......+ -...++|+.+.+++|.++.. +.......+.|..|++++|++
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22 7888899999999998874322222 23456889999999988743 233455678899999999988
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00019 Score=50.44 Aligned_cols=103 Identities=19% Similarity=0.142 Sum_probs=74.4
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC--CCcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--YLHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~--~~~~l~~ 93 (171)
+...+|++.|.+.. ...|..++.|..|.++.|.|+...|.--.-++.++ .|.+++|++..... .+..+++
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~------~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK------TLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccc------eEEecCcchhhhhhcchhccCCc
Confidence 46678999998864 34567889999999999999955443333455566 55899999876433 3888999
Q ss_pred ccEEEccCCcccccCC---ChhhhcCCCCcEEEcccC
Q 038012 94 LTHLDLSNNLLTGVIS---STPWEQLLNLVFVDLSNN 127 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~---~~~~~~l~~L~~L~l~~n 127 (171)
|++|.+-+|.+. ... ......+++|+.||+.+-
T Consensus 115 L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence 999999999876 211 112356788999998753
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=6.5e-06 Score=60.38 Aligned_cols=98 Identities=19% Similarity=0.104 Sum_probs=74.6
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC--CcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~--~~~l~~ 93 (171)
+++.|++.||.+.+. . ....|+.|++|.|+-|.|+.. ..+..++.|++| +|..|.|..+..- +.++++
T Consensus 20 ~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkEl------YLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKEL------YLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccc--hhHHHHHHHHHH------HHHhcccccHHHHHHHhcCch
Confidence 466789999999862 2 236899999999999999854 346678888854 8899998865432 888999
Q ss_pred ccEEEccCCcccccCCCh----hhhcCCCCcEEE
Q 038012 94 LTHLDLSNNLLTGVISST----PWEQLLNLVFVD 123 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~----~~~~l~~L~~L~ 123 (171)
|+.|++..|...|.-+.. ....+++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999988655543 245667777765
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=5.9e-05 Score=62.70 Aligned_cols=133 Identities=19% Similarity=0.176 Sum_probs=78.1
Q ss_pred eceeEEEeecCCCc-ccccccccC-CCCCcEEEecCCCcCCc-cchhhhcCCCcceeccccEEEeecccccccCCCCcCC
Q 038012 15 CDKAVFSLAQYFLS-GPIHPSLAN-LQSLSEIYLDNINLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHIL 91 (171)
Q Consensus 15 ~~l~~L~l~~n~~~-~~~~~~~~~-~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l 91 (171)
.++++|+++|...- ...+..++. +|+|+.|.+.+-.+... ...-..++++|. .||+|+.+++.. ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~------sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLR------SLDISGTNISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccc------eeecCCCCccCc-HHHhcc
Confidence 36777888775432 223333333 67888888877665421 122223455555 668888887754 337777
Q ss_pred CCccEEEccCCccccc-CCChhhhcCCCCcEEEcccCeeeccc------ChhhhCCCCCcEEEcccccccc
Q 038012 92 KNLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNI------SLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~-l~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
++|+.|.+.+=.+... --..+ -++++|+.||+|..+..... -..-..+|+||.||.++.-+..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777777776665511 11233 56788888888876544221 1112356788888888765544
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.47 E-value=0.00022 Score=52.42 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=79.3
Q ss_pred eceeEEEeecCCCccccccc----ccCCCCCcEEEecCCCcCCccchhhh----cCC---CcceeccccEEEeecccccc
Q 038012 15 CDKAVFSLAQYFLSGPIHPS----LANLQSLSEIYLDNINLSSTIPEFLA----DFS---NLTSFISAIFMDFSNNIFSG 83 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~---~L~~L~~l~~l~l~~n~~~~ 83 (171)
++++.+++|.|.|....|+. ++.-..|+.|.+++|.+.......++ .+. +...-+.|+.++...|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 36778888888876544433 55667788888888877533223332 111 11111145566777777754
Q ss_pred cCCC-----CcCCCCccEEEccCCcccccCCChh-------hhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEE
Q 038012 84 AIPY-----LHILKNLTHLDLSNNLLTGVISSTP-------WEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQ 147 (171)
Q Consensus 84 ~~~~-----~~~l~~L~~l~l~~n~~~~~l~~~~-------~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ 147 (171)
.... +.....+..+.+..|.|. |..+ ...+.+|+.||+..|.++-. +..++..++.|++|.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 3222 333456777777777775 2211 23456788888888777532 233445566677777
Q ss_pred ccccccc
Q 038012 148 LADNQFD 154 (171)
Q Consensus 148 l~~n~l~ 154 (171)
+.++-++
T Consensus 249 lnDClls 255 (388)
T COG5238 249 LNDCLLS 255 (388)
T ss_pred ccchhhc
Confidence 7766543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=1.9e-05 Score=58.59 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred hcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccccC
Q 038012 114 EQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
..++.+..|+++.|++... --.++..++.|+.|++..+++...+.
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 3445556677777776532 23467888999999999998875544
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.22 E-value=0.0021 Score=41.76 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=39.8
Q ss_pred ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhh
Q 038012 35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPW 113 (171)
Q Consensus 35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~ 113 (171)
|.+...|+.+.+.. .+.......|..+..++ .+.+.++ +..+... +..++.++.+.+.. .+. .++...|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~------~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLK------SINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-S------EEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccc------ccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence 44444555555543 23322333444444454 3344443 3333333 55555566666644 232 3444445
Q ss_pred hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012 114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (171)
..+.+++.+.+..+ +.......+... +++.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55666666666544 332333445554 566665544
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.0021 Score=41.74 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=61.6
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.+.+.. .+......+|..+..++.+.+..+ +.......|..++.++ .+.+.+ .+...... +..++.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~------~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLE------SITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-E------EEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccc------cccccc-cccccccccccccccc
Confidence 678888875 465545666888889999999885 6544456777777787 456654 44444444 7889999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML 143 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 143 (171)
+.+.+..+ +. .++...|..+ .++.+.+.. .+.......|.+.++|
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999776 54 5666667887 899988776 3443445566666655
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=5.5e-05 Score=56.17 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=64.3
Q ss_pred eceeEEEeecCC-Cccc-ccccccCCCCCcEEEecCCCcCCccchh-hhc-CCCcceeccccEEEeeccccccc---CCC
Q 038012 15 CDKAVFSLAQYF-LSGP-IHPSLANLQSLSEIYLDNINLSSTIPEF-LAD-FSNLTSFISAIFMDFSNNIFSGA---IPY 87 (171)
Q Consensus 15 ~~l~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-l~~L~~L~~l~~l~l~~n~~~~~---~~~ 87 (171)
.+++.++++.++ ++.. ..--+..++.|..|+++.|.+....-.. +.. -+.++ .|++++..-.-. ..-
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~------~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT------QLNLSGYRRNLQKSHLST 307 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh------hhhhhhhHhhhhhhHHHH
Confidence 478999999875 4421 1223567889999999998765321110 000 11233 335555332110 011
Q ss_pred -CcCCCCccEEEccCCcc-cccCCChhhhcCCCCcEEEcccCeeecccCh---hhhCCCCCcEEEccc
Q 038012 88 -LHILKNLTHLDLSNNLL-TGVISSTPWEQLLNLVFVDLSNNSLNGNISL---FLFELSMLQRLQLAD 150 (171)
Q Consensus 88 -~~~l~~L~~l~l~~n~~-~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~ 150 (171)
.+.++.+..|+++.|.. +...-.. |.+++.|+++.+++|..- .|. .+...++|..|++.+
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecc
Confidence 34556666666665542 2111122 355566666666665432 232 234445666666543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.12 E-value=0.0036 Score=49.01 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=31.7
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n 79 (171)
.+++.|++++|.++. +| .--.+|+.|.++++.--..+|+.+. ++|+ .|++++|
T Consensus 52 ~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe------~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLE------KLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhh------heEccCc
Confidence 357789999987775 45 1234688888887433224554432 3444 4456555
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00048 Score=49.99 Aligned_cols=107 Identities=24% Similarity=0.260 Sum_probs=55.9
Q ss_pred ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc--cccccCCC-CcCCCCccEEEccCCccccc
Q 038012 31 IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN--IFSGAIPY-LHILKNLTHLDLSNNLLTGV 107 (171)
Q Consensus 31 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n--~~~~~~~~-~~~l~~L~~l~l~~n~~~~~ 107 (171)
+.........++.|++.+..++.. ..|..+++|+ .|.++.| ++++-... ...+++|++++++.|+++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~Lk------kL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~- 105 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLK------KLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD- 105 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhh------hhcccCCcccccccceehhhhCCceeEEeecCCcccc-
Confidence 333344455566666655555421 2233344444 5578877 44433322 4455778888888887762
Q ss_pred CCChh--hhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEE
Q 038012 108 ISSTP--WEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQ 147 (171)
Q Consensus 108 l~~~~--~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~ 147 (171)
++.+ ...+.+|..|++..|..+..- -..|.-+++|..|+
T Consensus 106 -lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 106 -LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 2211 255566777777776554311 12234445555554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.68 E-value=0.0012 Score=55.18 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=76.9
Q ss_pred ceeceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccc--cCCCCc
Q 038012 13 VRCDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSG--AIPYLH 89 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~--~~~~~~ 89 (171)
..+.+++|.+.+-.+. +.+..-...+++|..||+++.+++.. ..++.+.+|+.| .+.+=.+.. ....+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L------~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL------SMRNLEFESYQDLIDLF 217 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH------hccCCCCCchhhHHHHh
Confidence 4468999999987764 33444556889999999999999843 556667777644 444433332 111277
Q ss_pred CCCCccEEEccCCcccccCCChh------hhcCCCCcEEEcccCeeecccC
Q 038012 90 ILKNLTHLDLSNNLLTGVISSTP------WEQLLNLVFVDLSNNSLNGNIS 134 (171)
Q Consensus 90 ~l~~L~~l~l~~n~~~~~l~~~~------~~~l~~L~~L~l~~n~~~~~~~ 134 (171)
.+++|++||+|..... ..+.-+ ...+++|+.||.+++.+.+..-
T Consensus 218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 8899999999987654 222111 2457899999999998875443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00075 Score=49.00 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=66.9
Q ss_pred eeEEEeecCCCcccccccccCCCCCcEEEecCC--CcCCccchhhhcCCCcceeccccEEEeeccccccc--CCCCcCCC
Q 038012 17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI--NLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA--IPYLHILK 92 (171)
Q Consensus 17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~--~~~~~~l~ 92 (171)
++.+++.+..++. -..+-.+++|+.|.++.| .+.+-++.....++.|+ ++++++|++..+ ++.+..++
T Consensus 45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~------~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLK------VLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCcee------EEeecCCccccccccchhhhhc
Confidence 4445555555542 223456789999999999 55555555455567777 679999998852 22367778
Q ss_pred CccEEEccCCcccc--cCCChhhhcCCCCcEEEcc
Q 038012 93 NLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLS 125 (171)
Q Consensus 93 ~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~ 125 (171)
+|..|++.+|.... ..-..+|.-+++|.+++-.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 88899998887762 1123456777888877643
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00011 Score=54.16 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=46.1
Q ss_pred EEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccc
Q 038012 74 MDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 74 l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~ 152 (171)
|++.++.++++ .-+..++.|++|.++-|.|+ .+.. +..|++|+.|+|..|.|.+.-. .-+.++++|+.|.+..|+
T Consensus 24 LNcwg~~L~DI-sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 24 LNCWGCGLDDI-SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccCCCccHH-HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 35555555432 11445566666777777665 4333 4667777777777776663211 124566777777777776
Q ss_pred ccccc
Q 038012 153 FDGQI 157 (171)
Q Consensus 153 l~~~~ 157 (171)
-.|.-
T Consensus 100 Cc~~a 104 (388)
T KOG2123|consen 100 CCGEA 104 (388)
T ss_pred ccccc
Confidence 66543
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.51 E-value=0.0014 Score=29.09 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=8.6
Q ss_pred CcEEEecCCCcCCccchhh
Q 038012 41 LSEIYLDNINLSSTIPEFL 59 (171)
Q Consensus 41 L~~L~l~~n~l~~~~~~~~ 59 (171)
|++|++++|.++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0008 Score=50.19 Aligned_cols=84 Identities=27% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCCCcEEEecCCCcCCc--cchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCccEEEccCCcccccCCChhhh
Q 038012 38 LQSLSEIYLDNINLSST--IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNLTHLDLSNNLLTGVISSTPWE 114 (171)
Q Consensus 38 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L~~l~l~~n~~~~~l~~~~~~ 114 (171)
.+.++.+++.+|.+++- +..-+..+|.++ +|+++.|.+.-.+..+ ....+|+++-+.+..+.+.-......
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~------~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALT------TLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccce------EeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 34455566666655521 111222344444 4466666554333332 23445555555555554322222224
Q ss_pred cCCCCcEEEcccC
Q 038012 115 QLLNLVFVDLSNN 127 (171)
Q Consensus 115 ~l~~L~~L~l~~n 127 (171)
.++.++.+.++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 4455555555555
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.23 E-value=0.017 Score=45.34 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=34.1
Q ss_pred ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCC
Q 038012 35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNN 102 (171)
Q Consensus 35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n 102 (171)
+..+..++.|++++|.++ .+|. + ..+|+ .|.++++.--...|. + ...|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLt------sL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELT------EITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCc------EEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445688999999999887 4552 2 22455 557766332222332 3 246777777776
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.17 E-value=0.0037 Score=27.64 Aligned_cols=12 Identities=50% Similarity=0.819 Sum_probs=5.5
Q ss_pred CcEEEcccCeee
Q 038012 119 LVFVDLSNNSLN 130 (171)
Q Consensus 119 L~~L~l~~n~~~ 130 (171)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.74 E-value=0.04 Score=40.95 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=11.7
Q ss_pred CCCCCcEEEccccccc
Q 038012 139 ELSMLQRLQLADNQFD 154 (171)
Q Consensus 139 ~l~~L~~L~l~~n~l~ 154 (171)
.+.+|+.|++++|.++
T Consensus 212 y~~~LevLDlqDNtft 227 (388)
T COG5238 212 YSHSLEVLDLQDNTFT 227 (388)
T ss_pred HhCcceeeeccccchh
Confidence 4577888888887664
No 69
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=94.38 E-value=0.024 Score=29.54 Aligned_cols=16 Identities=44% Similarity=1.120 Sum_probs=10.8
Q ss_pred CCCC--CCCCCcccceec
Q 038012 1 WNQR--RDFSDWNNVRCD 16 (171)
Q Consensus 1 w~~~--~~~~~~~~~~~~ 16 (171)
|+.+ .++|.|.||.|+
T Consensus 26 W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 26 WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp --TT--S-CCCSTTEEE-
T ss_pred CCCcCCCCCeeeccEEeC
Confidence 7776 799999999884
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.28 E-value=0.042 Score=22.57 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.3
Q ss_pred CCcEEEecCCCcC
Q 038012 40 SLSEIYLDNINLS 52 (171)
Q Consensus 40 ~L~~L~l~~n~l~ 52 (171)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.0062 Score=42.90 Aligned_cols=80 Identities=23% Similarity=0.104 Sum_probs=50.4
Q ss_pred ccEEEeecccccccCCC-CcCCCCccEEEccCCcccc-cCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEE
Q 038012 71 AIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQ 147 (171)
Q Consensus 71 l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~ 147 (171)
++.+|.++..+....-+ +..++.++.+.+.++..-+ .--+.+.+-.++|+.|++++| +|+...-..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34667777777654434 7777777777777775431 111111123457888888876 57765556677788888777
Q ss_pred ccc
Q 038012 148 LAD 150 (171)
Q Consensus 148 l~~ 150 (171)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 665
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.73 E-value=0.062 Score=24.51 Aligned_cols=19 Identities=47% Similarity=0.620 Sum_probs=9.6
Q ss_pred CCccEEEccCCcccccCCCh
Q 038012 92 KNLTHLDLSNNLLTGVISST 111 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~ 111 (171)
++|++|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44444
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.73 E-value=0.062 Score=24.51 Aligned_cols=19 Identities=47% Similarity=0.620 Sum_probs=9.6
Q ss_pred CCccEEEccCCcccccCCCh
Q 038012 92 KNLTHLDLSNNLLTGVISST 111 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~ 111 (171)
++|++|++++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44444
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.71 E-value=0.041 Score=24.63 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=6.3
Q ss_pred CCCcEEEcccCeeec
Q 038012 117 LNLVFVDLSNNSLNG 131 (171)
Q Consensus 117 ~~L~~L~l~~n~~~~ 131 (171)
++|+.|++++|.+.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.75 E-value=0.0034 Score=45.38 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=33.2
Q ss_pred EeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 75 DFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 75 ~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
|++.|++-.....++.++.+..++++.|.+. .+|.. ++....+.++++-.|..+ -.|.+++..+.++.++.-++++
T Consensus 48 d~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d-~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 48 DLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKD-AKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhh-HHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 4444443332222444444444444444444 44444 244444444444444333 3444445555555555444443
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.40 E-value=0.046 Score=43.34 Aligned_cols=38 Identities=34% Similarity=0.175 Sum_probs=18.6
Q ss_pred CCCccEEEccCCc-ccccCCChhhhcCCCCcEEEcccCe
Q 038012 91 LKNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSNNS 128 (171)
Q Consensus 91 l~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~n~ 128 (171)
++.|+.+.+.++. +++..-..+...+++|++|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4556666555554 3322222223455556666666543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.07 E-value=0.015 Score=42.16 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=53.5
Q ss_pred cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhh
Q 038012 34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPW 113 (171)
Q Consensus 34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~ 113 (171)
.++.....++||++.|++. .+...|+-++.+. .+|++.|.+...+..++....++.++.-.|... ..|.. +
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~------rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s-~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLV------RLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKS-Q 107 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHH------HHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcc-c
Confidence 3566677777777777665 3444454455554 446776666554434666666666666666655 56665 4
Q ss_pred hcCCCCcEEEcccCeee
Q 038012 114 EQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~ 130 (171)
+..+.++.++.-+|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 66777777666666544
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.05 E-value=0.88 Score=20.94 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=9.8
Q ss_pred CccEEEccCCcccccCCC
Q 038012 93 NLTHLDLSNNLLTGVISS 110 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~ 110 (171)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 5554
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.87 E-value=0.64 Score=36.84 Aligned_cols=111 Identities=23% Similarity=0.202 Sum_probs=67.2
Q ss_pred CCCCCcEEEecCCCcCCc--cchhhhcCCCcceeccccEEEeecc-cccccCC----C-CcCCCCccEEEccCCc-cccc
Q 038012 37 NLQSLSEIYLDNINLSST--IPEFLADFSNLTSFISAIFMDFSNN-IFSGAIP----Y-LHILKNLTHLDLSNNL-LTGV 107 (171)
Q Consensus 37 ~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~~l~~l~l~~n-~~~~~~~----~-~~~l~~L~~l~l~~n~-~~~~ 107 (171)
..+.++.+.+.++.-... .-.....++.|+ .++++++ ......+ . ...+.+++.++++.+. +++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~------~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLE------ELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhh------eecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 357777777776633222 223334556666 5577662 2111111 1 4556889999999888 5543
Q ss_pred CCChhhhcCCCCcEEEcccCe-eecccCh-hhhCCCCCcEEEcccccc
Q 038012 108 ISSTPWEQLLNLVFVDLSNNS-LNGNISL-FLFELSMLQRLQLADNQF 153 (171)
Q Consensus 108 l~~~~~~~l~~L~~L~l~~n~-~~~~~~~-~~~~l~~L~~L~l~~n~l 153 (171)
.-..+...|++|+.|.+.++. +++..-. ....+++|++|+++++..
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 333443458899999977765 5543323 344678899999997654
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.01 E-value=1.8 Score=19.89 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=8.6
Q ss_pred CCCcEEEecCCCcC
Q 038012 39 QSLSEIYLDNINLS 52 (171)
Q Consensus 39 ~~L~~L~l~~n~l~ 52 (171)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.87 E-value=2.1 Score=19.83 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=9.2
Q ss_pred CCCcEEEecCCCcC
Q 038012 39 QSLSEIYLDNINLS 52 (171)
Q Consensus 39 ~~L~~L~l~~n~l~ 52 (171)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777665
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.93 E-value=1.8 Score=35.32 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=14.7
Q ss_pred cEEEeecccccccCCC---CcCCCCccEEEccCC
Q 038012 72 IFMDFSNNIFSGAIPY---LHILKNLTHLDLSNN 102 (171)
Q Consensus 72 ~~l~l~~n~~~~~~~~---~~~l~~L~~l~l~~n 102 (171)
..+.+++|++..+..- -...+++..|+|++|
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555432211 223355556666665
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=64.34 E-value=0.049 Score=43.79 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=14.6
Q ss_pred cEEEcccCeeecc----cChhhhCCCCCcEEEcccccc
Q 038012 120 VFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 120 ~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l 153 (171)
+.++++.|.+... ++..+..++.++.+.+..|++
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 4455555544422 122233334445555555443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.64 E-value=1.6 Score=31.09 Aligned_cols=35 Identities=29% Similarity=0.175 Sum_probs=20.1
Q ss_pred CCCccEEEccCCc-ccccCCChhhhcCCCCcEEEccc
Q 038012 91 LKNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSN 126 (171)
Q Consensus 91 l~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~ 126 (171)
.++|+.|++++|. |++.--..+ ..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcC
Confidence 3577777777664 443222333 6666766665543
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.05 E-value=8.7 Score=37.57 Aligned_cols=31 Identities=39% Similarity=0.333 Sum_probs=25.4
Q ss_pred EeecccccccCCC-CcCCCCccEEEccCCccc
Q 038012 75 DFSNNIFSGAIPY-LHILKNLTHLDLSNNLLT 105 (171)
Q Consensus 75 ~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~ 105 (171)
||++|+|+.+.+. +..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 5788888887776 888888889999888876
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.56 E-value=14 Score=16.44 Aligned_cols=12 Identities=42% Similarity=0.263 Sum_probs=7.6
Q ss_pred CCCCcEEEcccC
Q 038012 116 LLNLVFVDLSNN 127 (171)
Q Consensus 116 l~~L~~L~l~~n 127 (171)
+++|++|+++++
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 356667777665
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.56 E-value=12 Score=30.84 Aligned_cols=62 Identities=31% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCccEEEccCCccc--ccCCChhhhcCCCCcEEEcccC--eeecccChhhhCC--CCCcEEEcccccccc
Q 038012 91 LKNLTHLDLSNNLLT--GVISSTPWEQLLNLVFVDLSNN--SLNGNISLFLFEL--SMLQRLQLADNQFDG 155 (171)
Q Consensus 91 l~~L~~l~l~~n~~~--~~l~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l--~~L~~L~l~~n~l~~ 155 (171)
.+.+..+++++|++. +.+.. +-...+++..|+|++| .+. ...++.++ ..|++|.+.+|+++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 356677777777765 12222 2245567777777777 332 12223222 346677777777664
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.97 E-value=17 Score=35.79 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=24.4
Q ss_pred EecCCCcCCccchhhhcCCCcceeccccEEEeeccccc
Q 038012 45 YLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFS 82 (171)
Q Consensus 45 ~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~ 82 (171)
+|++|+|+...+..|..+++|+ .|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~------~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLS------EIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCce------EEEeeCCccc
Confidence 5789999865556777777777 6699998764
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=26.15 E-value=5.5 Score=31.67 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=36.6
Q ss_pred eeEEEeecCCCcccc--cccccCCCCCcEEEecCCC-cCCccchhhh-cCCCcceeccccEEEeec-ccccccCCC--Cc
Q 038012 17 KAVFSLAQYFLSGPI--HPSLANLQSLSEIYLDNIN-LSSTIPEFLA-DFSNLTSFISAIFMDFSN-NIFSGAIPY--LH 89 (171)
Q Consensus 17 l~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~~l~~l~l~~-n~~~~~~~~--~~ 89 (171)
++.|.++|+.-.+.- -......++++.|.+.++. +++..-.++. .+. +++++++.. -.++...-+ ..
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~------~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR------KLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc------hhhhhhhcccchhHHHHHHHHHH
Confidence 455666665433211 1112345556666655553 2211111111 122 333556666 333433222 45
Q ss_pred CCCCccEEEccCCc
Q 038012 90 ILKNLTHLDLSNNL 103 (171)
Q Consensus 90 ~l~~L~~l~l~~n~ 103 (171)
.+++|.+++++++.
T Consensus 214 gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCP 227 (483)
T ss_pred hhhhHHHhhhccCc
Confidence 56777777777664
Done!