Query 038012
Match_columns 171
No_of_seqs 126 out of 1166
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-25 1E-29 165.8 14.2 151 1-158 27-191 (313)
2 4eco_A Uncharacterized protein 99.9 5.7E-23 1.9E-27 166.5 9.3 150 1-159 60-322 (636)
3 3e6j_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 140.7 13.7 150 1-158 12-176 (229)
4 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 142.2 15.0 141 17-158 39-198 (270)
5 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.6E-26 147.5 12.3 152 2-158 55-246 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 9.7E-22 3.3E-26 146.8 11.6 144 16-161 126-288 (313)
7 3rgz_A Protein brassinosteroid 99.9 1.7E-21 5.8E-26 160.8 13.9 90 70-160 633-723 (768)
8 3rgz_A Protein brassinosteroid 99.9 5.7E-21 1.9E-25 157.6 14.7 149 15-164 466-704 (768)
9 3m19_A Variable lymphocyte rec 99.9 1.2E-20 3.9E-25 136.7 13.5 137 15-158 35-172 (251)
10 4ecn_A Leucine-rich repeat pro 99.9 1.9E-21 6.4E-26 161.8 9.8 141 11-159 315-565 (876)
11 2o6s_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 131.6 13.3 137 16-159 29-166 (208)
12 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.6E-25 142.0 12.2 86 72-158 209-294 (328)
13 1ozn_A Reticulon 4 receptor; N 99.8 6.1E-20 2.1E-24 135.1 12.7 134 16-156 57-192 (285)
14 2v9t_B SLIT homolog 2 protein 99.8 5.3E-20 1.8E-24 130.9 11.8 132 16-154 33-165 (220)
15 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-20 1.8E-24 135.3 11.9 138 14-158 79-218 (285)
16 3rfs_A Internalin B, repeat mo 99.8 1.2E-19 4.2E-24 132.8 13.2 133 15-156 63-196 (272)
17 3m19_A Variable lymphocyte rec 99.8 1.5E-19 5.1E-24 130.9 12.9 136 14-156 58-194 (251)
18 3rfs_A Internalin B, repeat mo 99.8 3.6E-19 1.2E-23 130.3 13.4 140 14-160 84-224 (272)
19 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.8E-24 128.0 11.2 133 16-155 33-167 (220)
20 2v9t_B SLIT homolog 2 protein 99.8 6.2E-19 2.1E-23 125.4 12.4 135 15-159 11-146 (220)
21 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-19 7.7E-24 144.2 10.9 136 16-158 53-190 (635)
22 1p9a_G Platelet glycoprotein I 99.8 6.7E-19 2.3E-23 130.1 12.6 137 15-154 31-185 (290)
23 2z80_A TOLL-like receptor 2, v 99.8 1.3E-19 4.3E-24 137.1 8.8 136 16-158 53-191 (353)
24 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 124.5 13.4 140 8-158 12-152 (229)
25 2o6q_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 127.2 13.4 140 15-155 61-219 (270)
26 1w8a_A SLIT protein; signaling 99.8 9.6E-19 3.3E-23 121.9 11.6 134 15-158 8-143 (192)
27 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.1E-23 123.0 12.7 138 15-162 11-151 (220)
28 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 128.8 12.3 142 16-158 29-192 (306)
29 3v47_A TOLL-like receptor 5B a 99.8 9.5E-19 3.2E-23 136.1 11.8 138 15-159 275-413 (455)
30 1p9a_G Platelet glycoprotein I 99.8 2.4E-18 8.3E-23 127.1 12.9 140 15-158 10-165 (290)
31 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8.4E-23 134.1 13.2 141 16-158 124-283 (452)
32 2z66_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 128.1 11.6 142 15-158 78-240 (306)
33 2id5_A Lingo-1, leucine rich r 99.8 1.8E-18 6.3E-23 135.4 11.7 132 15-153 32-164 (477)
34 1wwl_A Monocyte differentiatio 99.8 9.5E-19 3.2E-23 130.4 9.2 137 14-157 94-244 (312)
35 3zyj_A Leucine-rich repeat-con 99.8 4.2E-18 1.4E-22 132.3 13.2 86 71-158 187-272 (440)
36 2z81_A CD282 antigen, TOLL-lik 99.8 8.7E-19 3E-23 139.2 9.1 136 16-158 27-165 (549)
37 3vq2_A TLR4, TOLL-like recepto 99.8 2.6E-18 9E-23 138.0 11.9 136 15-158 32-170 (606)
38 3oja_B Anopheles plasmodium-re 99.8 1.7E-18 5.9E-23 139.3 10.6 134 16-156 52-186 (597)
39 2z62_A TOLL-like receptor 4, v 99.8 3.6E-18 1.2E-22 125.0 11.3 135 15-156 28-164 (276)
40 3o6n_A APL1; leucine-rich repe 99.8 2.1E-18 7.2E-23 132.0 10.4 134 16-156 46-180 (390)
41 3v47_A TOLL-like receptor 5B a 99.8 1.7E-18 5.9E-23 134.6 10.0 138 15-158 30-171 (455)
42 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-18 6.5E-23 140.5 10.5 137 15-158 25-162 (680)
43 2o6r_A Variable lymphocyte rec 99.8 7.5E-18 2.5E-22 115.8 11.9 134 15-158 7-141 (177)
44 3zyi_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 132.5 12.2 104 16-126 76-180 (452)
45 3oja_A Leucine-rich immune mol 99.8 1.6E-18 5.4E-23 136.5 9.3 139 16-158 35-208 (487)
46 2xot_A Amphoterin-induced prot 99.8 4.2E-18 1.4E-22 129.4 11.3 135 16-157 40-179 (361)
47 2ell_A Acidic leucine-rich nuc 99.8 2.2E-18 7.6E-23 117.4 8.8 131 15-155 24-161 (168)
48 2xwt_C Thyrotropin receptor; s 99.8 3E-18 1E-22 123.0 9.8 130 16-154 32-169 (239)
49 4eco_A Uncharacterized protein 99.8 6.9E-19 2.4E-23 142.6 7.1 120 31-158 198-347 (636)
50 2xwt_C Thyrotropin receptor; s 99.8 4.1E-18 1.4E-22 122.3 10.2 141 14-156 54-220 (239)
51 3zyj_A Leucine-rich repeat-con 99.8 7.5E-18 2.6E-22 130.9 12.4 135 16-158 65-224 (440)
52 2z62_A TOLL-like receptor 4, v 99.8 5E-18 1.7E-22 124.2 10.7 121 14-141 51-173 (276)
53 2wfh_A SLIT homolog 2 protein 99.8 1.5E-17 5.3E-22 116.0 12.5 129 15-154 10-139 (193)
54 2id5_A Lingo-1, leucine rich r 99.8 9.8E-18 3.3E-22 131.3 12.7 134 14-154 55-189 (477)
55 3oja_B Anopheles plasmodium-re 99.7 2E-17 6.9E-22 133.1 14.1 140 15-156 75-293 (597)
56 2o6s_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 115.1 13.5 132 18-159 10-142 (208)
57 3o6n_A APL1; leucine-rich repe 99.7 2.6E-17 8.9E-22 125.9 13.7 140 16-156 70-287 (390)
58 2z80_A TOLL-like receptor 2, v 99.7 5E-18 1.7E-22 128.4 9.4 141 16-159 101-294 (353)
59 4ezg_A Putative uncharacterize 99.7 2.9E-17 9.8E-22 114.8 12.5 135 13-161 42-178 (197)
60 1wwl_A Monocyte differentiatio 99.7 1.4E-18 4.8E-23 129.5 6.2 139 12-158 118-269 (312)
61 4g8a_A TOLL-like receptor 4; l 99.7 8.1E-18 2.8E-22 135.1 11.0 127 19-155 35-162 (635)
62 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 127.6 8.2 113 16-130 35-182 (317)
63 3vq2_A TLR4, TOLL-like recepto 99.7 8.2E-18 2.8E-22 135.1 10.6 133 17-156 401-536 (606)
64 2z63_A TOLL-like receptor 4, v 99.7 1.4E-17 4.7E-22 132.7 11.6 137 15-158 28-166 (570)
65 3t6q_A CD180 antigen; protein- 99.7 1.2E-17 4E-22 134.2 11.0 142 16-158 34-196 (606)
66 4ezg_A Putative uncharacterize 99.7 2.1E-17 7.1E-22 115.5 10.7 130 13-155 64-195 (197)
67 1xku_A Decorin; proteoglycan, 99.7 3.6E-17 1.2E-21 122.6 12.7 141 16-158 122-280 (330)
68 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-17 3.6E-22 139.4 10.4 138 15-158 24-165 (844)
69 2je0_A Acidic leucine-rich nuc 99.7 5.5E-18 1.9E-22 113.3 7.1 126 15-149 17-148 (149)
70 2ft3_A Biglycan; proteoglycan, 99.7 4.1E-17 1.4E-21 122.4 11.8 141 15-158 123-281 (332)
71 3t6q_A CD180 antigen; protein- 99.7 6.5E-17 2.2E-21 129.9 13.2 142 15-158 278-442 (606)
72 2z7x_B TOLL-like receptor 1, v 99.7 4.1E-17 1.4E-21 128.9 11.6 136 12-158 321-460 (520)
73 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6E-22 125.9 8.9 135 13-154 62-202 (361)
74 1xku_A Decorin; proteoglycan, 99.7 1.5E-16 5.3E-21 119.1 13.6 130 16-154 53-184 (330)
75 4ecn_A Leucine-rich repeat pro 99.7 8.7E-18 3E-22 140.0 7.3 141 13-158 489-635 (876)
76 1ziw_A TOLL-like receptor 3; i 99.7 1.3E-16 4.5E-21 129.8 13.5 140 16-155 406-574 (680)
77 2z63_A TOLL-like receptor 4, v 99.7 4.6E-17 1.6E-21 129.7 10.5 139 14-159 51-195 (570)
78 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.6E-21 118.2 12.5 131 15-155 63-209 (308)
79 2z7x_B TOLL-like receptor 1, v 99.7 7.2E-17 2.5E-21 127.5 11.2 132 15-158 21-157 (520)
80 2ft3_A Biglycan; proteoglycan, 99.7 1.4E-16 4.9E-21 119.4 12.0 106 16-130 55-160 (332)
81 4glp_A Monocyte differentiatio 99.7 1.6E-17 5.5E-22 123.6 6.6 138 16-154 92-264 (310)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.4E-16 4.7E-21 127.2 12.1 136 12-158 350-489 (562)
83 4glp_A Monocyte differentiatio 99.7 4.2E-17 1.4E-21 121.4 8.4 142 16-158 65-241 (310)
84 2z81_A CD282 antigen, TOLL-lik 99.7 1.6E-17 5.6E-22 131.9 6.4 133 14-152 49-183 (549)
85 1h6t_A Internalin B; cell adhe 99.7 4.1E-16 1.4E-20 115.2 12.4 125 15-155 68-192 (291)
86 1h6u_A Internalin H; cell adhe 99.7 3.3E-16 1.1E-20 116.6 11.8 133 14-156 40-188 (308)
87 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.5E-21 125.6 9.4 130 15-154 120-250 (487)
88 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-16 5.5E-21 118.6 9.4 130 15-154 120-250 (317)
89 2o6r_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 107.5 10.0 113 15-134 28-141 (177)
90 1xeu_A Internalin C; cellular 99.7 8.7E-16 3E-20 111.9 12.6 132 15-156 41-187 (263)
91 1a9n_A U2A', U2A'; complex (nu 99.7 2E-16 7E-21 108.5 8.0 128 15-155 19-154 (176)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.5E-16 2.9E-20 122.7 12.4 124 18-154 34-159 (562)
93 1w8a_A SLIT protein; signaling 99.7 7.4E-16 2.5E-20 107.2 10.3 112 16-134 30-143 (192)
94 2ell_A Acidic leucine-rich nuc 99.7 6.2E-16 2.1E-20 105.2 9.7 115 36-158 21-137 (168)
95 2wfh_A SLIT homolog 2 protein 99.7 1.2E-15 4E-20 106.4 11.2 110 15-132 31-141 (193)
96 1h6t_A Internalin B; cell adhe 99.7 1.3E-15 4.3E-20 112.6 11.9 128 15-158 46-173 (291)
97 3j0a_A TOLL-like receptor 5; m 99.7 4.2E-16 1.4E-20 129.8 10.1 139 14-158 47-191 (844)
98 2je0_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 105.3 6.9 114 37-158 15-130 (149)
99 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.6E-21 130.0 7.5 119 31-159 216-334 (727)
100 4fmz_A Internalin; leucine ric 99.6 1.4E-15 4.6E-20 114.5 11.5 112 35-158 217-328 (347)
101 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.3E-20 122.8 11.6 125 14-154 64-188 (605)
102 4b8c_D Glucose-repressible alc 99.6 7.9E-17 2.7E-21 132.3 2.9 134 15-158 224-358 (727)
103 3g39_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 101.7 10.4 108 15-132 9-117 (170)
104 1xeu_A Internalin C; cellular 99.6 4E-15 1.4E-19 108.4 11.0 110 14-132 62-187 (263)
105 4fmz_A Internalin; leucine ric 99.6 3.8E-15 1.3E-19 112.0 10.5 128 13-154 219-346 (347)
106 1o6v_A Internalin A; bacterial 99.6 6.6E-15 2.3E-19 115.1 12.1 127 16-158 244-370 (466)
107 3g39_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 101.0 9.8 109 40-158 10-119 (170)
108 1dce_A Protein (RAB geranylger 99.6 5.1E-15 1.7E-19 118.5 11.2 110 40-160 442-552 (567)
109 1a9n_A U2A', U2A'; complex (nu 99.6 3.7E-15 1.3E-19 102.2 8.8 114 34-159 14-130 (176)
110 1m9s_A Internalin B; cell inva 99.6 5.5E-15 1.9E-19 119.1 11.1 128 15-158 43-170 (605)
111 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 99.4 10.9 109 14-132 11-120 (174)
112 2ast_B S-phase kinase-associat 99.6 4.4E-16 1.5E-20 116.6 3.6 137 15-152 93-258 (336)
113 1ds9_A Outer arm dynein; leuci 99.6 7.7E-18 2.7E-22 117.8 -5.8 133 16-159 19-158 (198)
114 3cvr_A Invasion plasmid antige 99.6 6.1E-15 2.1E-19 118.0 10.1 130 1-155 36-174 (571)
115 2r9u_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 99.8 9.9 107 41-157 14-121 (174)
116 1dce_A Protein (RAB geranylger 99.6 4.4E-15 1.5E-19 118.9 8.9 122 16-148 442-567 (567)
117 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.8E-19 116.5 10.6 79 71-158 162-247 (571)
118 1o6v_A Internalin A; bacterial 99.6 2.2E-14 7.4E-19 112.2 12.0 132 15-156 199-346 (466)
119 2ca6_A RAN GTPase-activating p 99.6 3.1E-16 1E-20 119.9 0.4 38 15-52 94-135 (386)
120 4ay9_X Follicle-stimulating ho 99.6 2.3E-14 7.7E-19 108.3 10.0 142 15-159 30-219 (350)
121 3bz5_A Internalin-J, INLJ; leu 99.5 7.2E-14 2.5E-18 109.2 12.4 39 114-155 209-247 (457)
122 3bz5_A Internalin-J, INLJ; leu 99.5 9.1E-14 3.1E-18 108.6 11.9 100 14-130 41-140 (457)
123 2ast_B S-phase kinase-associat 99.5 6E-15 2E-19 110.4 2.4 136 15-152 70-233 (336)
124 3goz_A Leucine-rich repeat-con 99.5 1.3E-14 4.4E-19 110.1 4.2 47 15-61 22-73 (362)
125 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.7E-19 111.3 3.4 135 16-157 160-319 (386)
126 3g06_A SSPH2 (leucine-rich rep 99.5 3.3E-13 1.1E-17 109.1 11.1 80 70-158 222-301 (622)
127 1jl5_A Outer protein YOPM; leu 99.5 8.4E-13 2.9E-17 103.1 12.7 77 71-155 175-251 (454)
128 4ay9_X Follicle-stimulating ho 99.5 4.9E-13 1.7E-17 101.0 10.9 90 70-163 155-245 (350)
129 3goz_A Leucine-rich repeat-con 99.5 2.2E-14 7.5E-19 108.8 3.3 44 16-59 52-100 (362)
130 1jl5_A Outer protein YOPM; leu 99.5 1.3E-14 4.5E-19 113.3 1.8 137 16-161 12-192 (454)
131 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.8E-20 106.2 -3.8 128 14-154 47-185 (198)
132 2ifg_A High affinity nerve gro 99.4 5E-13 1.7E-17 100.6 8.8 104 19-132 12-118 (347)
133 3g06_A SSPH2 (leucine-rich rep 99.4 7.4E-13 2.5E-17 107.0 9.5 89 1-105 15-114 (622)
134 3sb4_A Hypothetical leucine ri 99.4 1.2E-12 4.1E-17 98.0 9.8 152 14-170 100-325 (329)
135 1z7x_W Ribonuclease inhibitor; 99.4 4.9E-14 1.7E-18 109.6 0.3 142 15-156 227-413 (461)
136 2ifg_A High affinity nerve gro 99.4 2.2E-12 7.6E-17 97.0 9.0 103 42-154 11-116 (347)
137 1z7x_W Ribonuclease inhibitor; 99.3 5.5E-13 1.9E-17 103.7 1.4 84 71-154 144-240 (461)
138 3sb4_A Hypothetical leucine ri 99.2 2.5E-11 8.6E-16 90.8 8.6 145 14-169 48-300 (329)
139 3un9_A NLR family member X1; l 99.2 3.2E-12 1.1E-16 97.4 0.4 133 16-155 102-253 (372)
140 3un9_A NLR family member X1; l 99.1 3.4E-12 1.2E-16 97.3 -1.0 136 13-155 70-225 (372)
141 3ogk_B Coronatine-insensitive 99.1 7.5E-11 2.6E-15 94.3 3.7 136 15-156 378-528 (592)
142 3ogk_B Coronatine-insensitive 98.9 1.3E-10 4.6E-15 92.8 0.7 37 17-53 140-178 (592)
143 2p1m_B Transport inhibitor res 98.8 3.4E-10 1.2E-14 90.5 0.1 129 16-151 106-245 (594)
144 2p1m_B Transport inhibitor res 98.8 7.5E-10 2.6E-14 88.5 0.9 133 15-154 372-519 (594)
145 4fdw_A Leucine rich hypothetic 98.8 9.9E-08 3.4E-12 73.3 11.7 134 15-151 157-333 (401)
146 4fdw_A Leucine rich hypothetic 98.8 8.4E-08 2.9E-12 73.7 11.2 133 16-155 204-359 (401)
147 2ra8_A Uncharacterized protein 98.8 1.2E-08 4.1E-13 77.4 6.1 132 15-155 172-321 (362)
148 1io0_A Tropomodulin; LRR prote 98.7 3.1E-09 1E-13 73.3 0.7 117 31-154 28-164 (185)
149 3rw6_A Nuclear RNA export fact 98.5 3.1E-08 1.1E-12 72.0 2.6 72 73-147 174-257 (267)
150 1io0_A Tropomodulin; LRR prote 98.5 2.6E-08 8.8E-13 68.6 1.9 110 15-131 36-165 (185)
151 3rw6_A Nuclear RNA export fact 98.4 8.7E-07 3E-11 64.4 6.5 67 89-158 167-237 (267)
152 3e4g_A ATP synthase subunit S, 98.3 3.2E-07 1.1E-11 62.5 2.8 78 73-151 65-149 (176)
153 2ra8_A Uncharacterized protein 98.3 4.4E-07 1.5E-11 68.9 3.6 130 14-152 192-341 (362)
154 3e4g_A ATP synthase subunit S, 98.2 1.6E-06 5.3E-11 59.1 3.8 85 39-130 61-153 (176)
155 4fs7_A Uncharacterized protein 97.9 0.00017 5.8E-09 54.9 10.8 114 33-151 247-376 (394)
156 4h09_A Hypothetical leucine ri 97.8 0.00028 9.5E-09 53.3 10.7 110 32-151 233-343 (379)
157 4gt6_A Cell surface protein; l 97.8 0.00022 7.4E-09 54.4 10.0 111 32-153 258-369 (394)
158 4gt6_A Cell surface protein; l 97.6 0.00035 1.2E-08 53.2 9.1 124 16-153 266-390 (394)
159 4h09_A Hypothetical leucine ri 97.6 0.0011 3.8E-08 50.0 11.4 124 35-170 213-337 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.4 1.9E-05 6.6E-10 54.7 -0.5 114 34-153 36-169 (197)
161 3rfe_A Platelet glycoprotein I 97.3 0.00058 2E-08 44.0 5.8 37 93-130 32-68 (130)
162 4fs7_A Uncharacterized protein 97.2 0.001 3.5E-08 50.6 7.1 101 34-146 292-393 (394)
163 3rfe_A Platelet glycoprotein I 97.1 0.00089 3E-08 43.1 5.4 56 96-154 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0004 1.4E-08 48.0 3.3 113 15-130 41-170 (197)
165 2lz0_A Uncharacterized protein 67.3 4.8 0.00016 24.1 2.9 44 81-126 8-52 (100)
166 3ox7_P MH027; urokinase-type p 28.3 17 0.00058 14.9 0.4 12 5-16 5-16 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.9e-25 Score=165.84 Aligned_cols=151 Identities=31% Similarity=0.497 Sum_probs=114.8
Q ss_pred CCCCCCCCC--ccccee-------ceeEEEeecCCCcc--cccccccCCCCCcEEEecC-CCcCCccchhhhcCCCccee
Q 038012 1 WNQRRDFSD--WNNVRC-------DKAVFSLAQYFLSG--PIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSF 68 (171)
Q Consensus 1 w~~~~~~~~--~~~~~~-------~l~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 68 (171)
|+.+.++|. |.||.| +++.|++++|.+.+ .+|..+..++.|++|++++ |.+.+.+|+.|..+++|++|
T Consensus 27 W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L 106 (313)
T 1ogq_A 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106 (313)
T ss_dssp CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE
T ss_pred CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEE
Confidence 888889998 999998 48899999999998 8899999999999999995 99998999999999999844
Q ss_pred ccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCC-CCcEE
Q 038012 69 ISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS-MLQRL 146 (171)
Q Consensus 69 ~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L 146 (171)
++++|.+++..+. ++.+++|++|++++|.+.+.+|..+ ..+++|+.|++++|++++.+|..+..++ +|+.|
T Consensus 107 ------~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 107 ------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp ------EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred ------ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 6666666655554 6666666666666666665555553 6666666666666666666666666665 66666
Q ss_pred EccccccccccC
Q 038012 147 QLADNQFDGQIT 158 (171)
Q Consensus 147 ~l~~n~l~~~~p 158 (171)
++++|.+.+.+|
T Consensus 180 ~L~~N~l~~~~~ 191 (313)
T 1ogq_A 180 TISRNRLTGKIP 191 (313)
T ss_dssp ECCSSEEEEECC
T ss_pred ECcCCeeeccCC
Confidence 666666665555
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=5.7e-23 Score=166.47 Aligned_cols=150 Identities=17% Similarity=0.268 Sum_probs=121.5
Q ss_pred CCCCCCCCCc---cccee----ceeEEEeecCCCcccccccccCCCCCcEEEecCCCc----------------------
Q 038012 1 WNQRRDFSDW---NNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINL---------------------- 51 (171)
Q Consensus 1 w~~~~~~~~~---~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l---------------------- 51 (171)
|+.+.++|.| .||.| +++.|+++++.+.|.+|++++.++.|++|++++|.+
T Consensus 60 W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~ 139 (636)
T 4eco_A 60 WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139 (636)
T ss_dssp CCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHH
T ss_pred CCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHH
Confidence 8888999999 99999 789999999999999999999999999999998843
Q ss_pred --------------------------------------------------------CCccchhhhcCCCcceeccccEEE
Q 038012 52 --------------------------------------------------------SSTIPEFLADFSNLTSFISAIFMD 75 (171)
Q Consensus 52 --------------------------------------------------------~~~~~~~~~~l~~L~~L~~l~~l~ 75 (171)
++ +|+.++.+++|+ +|+
T Consensus 140 ~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~------~L~ 212 (636)
T 4eco_A 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR------QFY 212 (636)
T ss_dssp HHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC------EEE
T ss_pred HHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC------EEE
Confidence 23 566666666666 668
Q ss_pred eecccccc------------------cCCCCc--CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eec-cc
Q 038012 76 FSNNIFSG------------------AIPYLH--ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNG-NI 133 (171)
Q Consensus 76 l~~n~~~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~-~~ 133 (171)
+++|.+++ ++..++ .+++|++|++++|.+.+.+|..+ +.+++|+.|++++|+ +++ .+
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHH
T ss_pred CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccc
Confidence 99999888 444477 88899999999998888888774 888888888888887 777 67
Q ss_pred ChhhhCC------CCCcEEEccccccccccCC
Q 038012 134 SLFLFEL------SMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 134 ~~~~~~l------~~L~~L~l~~n~l~~~~p~ 159 (171)
|..++.+ ++|++|++++|.+. .+|.
T Consensus 292 p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 292 KDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 7666665 67777777777766 4554
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=9.6e-22 Score=140.75 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=130.1
Q ss_pred CCCCCCCCCccccee--------------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcc
Q 038012 1 WNQRRDFSDWNNVRC--------------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLT 66 (171)
Q Consensus 1 w~~~~~~~~~~~~~~--------------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 66 (171)
|..++..|+|.++.| +++.|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 445677788888776 488999999999987788899999999999999999865556677888887
Q ss_pred eeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcE
Q 038012 67 SFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145 (171)
Q Consensus 67 ~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 145 (171)
+|++++|.++++++. +..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..+..+..+++|+.
T Consensus 92 ------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 92 ------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp ------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 669999999988777 889999999999999998 889885 99999999999999999766677999999999
Q ss_pred EEccccccccccC
Q 038012 146 LQLADNQFDGQIT 158 (171)
Q Consensus 146 L~l~~n~l~~~~p 158 (171)
|++++|++....+
T Consensus 164 L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 164 AYLFGNPWDCECR 176 (229)
T ss_dssp EECTTSCBCTTBG
T ss_pred EEeeCCCccCCcc
Confidence 9999999875543
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.9e-21 Score=142.22 Aligned_cols=141 Identities=22% Similarity=0.258 Sum_probs=91.2
Q ss_pred eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEeec
Q 038012 17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFSN 78 (171)
Q Consensus 17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~~ 78 (171)
++.|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|+ +|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 55667777766654455677777788888888877754444556666666554 455666666
Q ss_pred ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012 79 NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157 (171)
Q Consensus 79 n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 157 (171)
|.+++..+. ++.+++|++|++++|.+. .+|...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 666665555 566666666777666665 455444566677777777777766555555666777777777777766443
Q ss_pred C
Q 038012 158 T 158 (171)
Q Consensus 158 p 158 (171)
+
T Consensus 198 ~ 198 (270)
T 2o6q_A 198 E 198 (270)
T ss_dssp T
T ss_pred H
Confidence 3
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.1e-21 Score=147.50 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=88.5
Q ss_pred CCCCCCCCccccee-------------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCccee
Q 038012 2 NQRRDFSDWNNVRC-------------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF 68 (171)
Q Consensus 2 ~~~~~~~~~~~~~~-------------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 68 (171)
+.+.++|.|.|+.+ +++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 34678899977765 4667777777776 35666666677777777777666 566666666666654
Q ss_pred c-----------------cccEEEeecccccccCCC-CcC---------CCCccEEEccCCcccccCCChhhhcCCCCcE
Q 038012 69 I-----------------SAIFMDFSNNIFSGAIPY-LHI---------LKNLTHLDLSNNLLTGVISSTPWEQLLNLVF 121 (171)
Q Consensus 69 ~-----------------~l~~l~l~~n~~~~~~~~-~~~---------l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~ 121 (171)
+ +|++|++++|.+.+..|. +.. +++|++|++++|.++ .+|..+ +.+++|+.
T Consensus 133 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKS 210 (328)
T ss_dssp EEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCE
T ss_pred ECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCE
Confidence 4 344555555554444333 322 555555555555554 455542 55555555
Q ss_pred EEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 122 VDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 122 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|++++|.+.+ +|..+..+++|+.|++++|.+.+.+|
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH
Confidence 5555555552 34445555555555555555555554
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=9.7e-22 Score=146.76 Aligned_cols=144 Identities=28% Similarity=0.368 Sum_probs=96.2
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCC-Ccceec-----------------cccEEEee
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFS-NLTSFI-----------------SAIFMDFS 77 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~-----------------~l~~l~l~ 77 (171)
++++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ .|+.++ .|+.|+++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence 344444444444444444444455555555555555444454444444 444333 35566666
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
+|.+++..+. +..+++|+.|++++|.+.+.+|. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.|.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 6666665555 77777888888888887744444 37788889999999998888898999999999999999999999
Q ss_pred cCCCC
Q 038012 157 ITKFS 161 (171)
Q Consensus 157 ~p~~~ 161 (171)
+|...
T Consensus 284 ip~~~ 288 (313)
T 1ogq_A 284 IPQGG 288 (313)
T ss_dssp CCCST
T ss_pred CCCCc
Confidence 98764
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.7e-21 Score=160.76 Aligned_cols=90 Identities=34% Similarity=0.562 Sum_probs=83.3
Q ss_pred cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012 70 SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 148 (171)
+|+++|+++|++++.+|. ++.++.|+.|++++|.++|.+|..+ +.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 467899999999988887 9999999999999999999999995 99999999999999999999999999999999999
Q ss_pred cccccccccCCC
Q 038012 149 ADNQFDGQITKF 160 (171)
Q Consensus 149 ~~n~l~~~~p~~ 160 (171)
++|.+.|.+|+.
T Consensus 712 s~N~l~g~iP~~ 723 (768)
T 3rgz_A 712 SNNNLSGPIPEM 723 (768)
T ss_dssp CSSEEEEECCSS
T ss_pred cCCcccccCCCc
Confidence 999999999953
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=5.7e-21 Score=157.64 Aligned_cols=149 Identities=30% Similarity=0.454 Sum_probs=109.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF 76 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l 76 (171)
.++++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+ +|+++++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 4566666666666666666666666666666666666666666666666666554 4567788
Q ss_pred ecccccccCCC---------------------------------------------------------------------
Q 038012 77 SNNIFSGAIPY--------------------------------------------------------------------- 87 (171)
Q Consensus 77 ~~n~~~~~~~~--------------------------------------------------------------------- 87 (171)
++|.+++..|.
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 88777654332
Q ss_pred --CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCCCC
Q 038012 88 --LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSNAS 164 (171)
Q Consensus 88 --~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~ 164 (171)
++.++.|+++++++|.++|.+|..+ +.++.|+.|++++|.+++.+|..++.+++|+.|++++|.+.|.+| .+..++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred hhhhccccccEEECcCCcccccCCHHH-hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 2234668888888888888888885 889999999999999998899999999999999999999998888 344443
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=136.71 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=108.0
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+ +|++++|.+++.++. +..+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG------TLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC------EEECCCCcccccChhHhcccCC
Confidence 3577888888888877777788889999999999988877677777777777 568888888877666 778888
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 109 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 109 LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 888888888887 5666556778888888888888886655577888888888888888876555
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.9e-21 Score=161.84 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=114.0
Q ss_pred cccee----ceeEEEeecCCCcccccccccCCCCCcEEEe-cCCCcCCc-------------------------------
Q 038012 11 NNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYL-DNINLSST------------------------------- 54 (171)
Q Consensus 11 ~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~------------------------------- 54 (171)
.||.| +++.|+|+++.+.|.+|++++.++.|+.|++ ++|.+++.
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~ 394 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence 99998 4899999999999999999999999999999 77754333
Q ss_pred ---------------------------------------------cchhhhcCCCcceeccccEEEeecccccc------
Q 038012 55 ---------------------------------------------IPEFLADFSNLTSFISAIFMDFSNNIFSG------ 83 (171)
Q Consensus 55 ---------------------------------------------~~~~~~~l~~L~~L~~l~~l~l~~n~~~~------ 83 (171)
+|+.+..+++|+ .|++++|.+++
T Consensus 395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~------~L~Ls~N~Lsg~~i~~~ 468 (876)
T 4ecn_A 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ------IIYFANSPFTYDNIAVD 468 (876)
T ss_dssp CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC------EEEEESCCCCGGGBSSS
T ss_pred CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCC------EEECcCCcCCCCccccc
Confidence 566666666666 77999999998
Q ss_pred ------------cCCCCc--CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eec-ccChhhhCCC------
Q 038012 84 ------------AIPYLH--ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNG-NISLFLFELS------ 141 (171)
Q Consensus 84 ------------~~~~~~--~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~------ 141 (171)
+++.++ .+++|++|++++|.+.+.+|..+ +.+++|+.|++++|+ +++ .+|..++.++
T Consensus 469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 444477 89999999999999888888774 899999999999987 877 6676665554
Q ss_pred -CCcEEEccccccccccCC
Q 038012 142 -MLQRLQLADNQFDGQITK 159 (171)
Q Consensus 142 -~L~~L~l~~n~l~~~~p~ 159 (171)
+|++|++++|.+. .+|.
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp TTCCEEECCSSCCC-BCCC
T ss_pred CCccEEEeeCCcCC-ccCC
Confidence 7788888877777 5554
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.2e-20 Score=131.57 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=118.1
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+ +|++++|.+++.++. +..+++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT------YLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcC------EEECCCCcCCccCHhHhcCccCC
Confidence 588999999999976666788999999999999999965555677888887 669999999988777 8899999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|.
T Consensus 103 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 103 KELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred CEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 99999999998 56665568999999999999999976666789999999999999988776654
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.1e-20 Score=142.05 Aligned_cols=86 Identities=20% Similarity=0.118 Sum_probs=44.1
Q ss_pred cEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012 72 IFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 72 ~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
+.|++++|.+++.++.++.+++|++|++++|.+.+.+|..+ +.+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 34455555554433334445555555555555444444442 55555555555555554455555555555555555555
Q ss_pred ccccccC
Q 038012 152 QFDGQIT 158 (171)
Q Consensus 152 ~l~~~~p 158 (171)
.+.+.+|
T Consensus 288 ~~~~~iP 294 (328)
T 4fcg_A 288 VNLSRLP 294 (328)
T ss_dssp TTCCCCC
T ss_pred Cchhhcc
Confidence 5555555
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=6.1e-20 Score=135.05 Aligned_cols=134 Identities=20% Similarity=0.205 Sum_probs=60.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
++++|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|+ +|++++|.+++..+. +..+++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH------TLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC------EEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC------EEECCCCcCCEECHhHhhCCcC
Confidence 34444444444444334444444555555555554 4333344444444444 444444444444333 444444
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|++|++++|.+. .++...++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 131 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 555555555444 23322234444445555554444433333344444444444444444443
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=5.3e-20 Score=130.94 Aligned_cols=132 Identities=20% Similarity=0.197 Sum_probs=108.1
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+ +|++++|.++.+++. +..+++|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN------SLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC------EEECCCCcCCccCHhHccCCCCC
Confidence 578888988888876666788888899999999988877778888888777 668899998887776 7888899
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
++|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 107 ~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999888433444 588889999999999888776677888888999999888864
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=5.3e-20 Score=135.35 Aligned_cols=138 Identities=20% Similarity=0.205 Sum_probs=114.2
Q ss_pred eeceeEEEeecCC-CcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012 14 RCDKAVFSLAQYF-LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91 (171)
Q Consensus 14 ~~~l~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l 91 (171)
..++++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|+ +|++++|.+++.++. ++.+
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ------YLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC------EEECCCCcccccCHhHhccC
Confidence 4679999999997 7765678899999999999999999987788888888888 568888888877766 7888
Q ss_pred CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++|++|++++|.++ .++...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus 153 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 88888888888887 5555445788888888888888887778888888888888888888876554
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.2e-19 Score=132.80 Aligned_cols=133 Identities=26% Similarity=0.293 Sum_probs=68.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|+. |++++|.+++.++. ++.+++
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~------L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------LVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE------EECTTSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE------EECCCCcCCccCHHHhccCCC
Confidence 466677777777665 2 35666677777777777776555455566666653 34444444444433 444444
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 135 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 444444444444 23332234444444444444444433333344444444444444444433
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=1.5e-19 Score=130.87 Aligned_cols=136 Identities=24% Similarity=0.227 Sum_probs=121.4
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+ +|++++|.+++.++. +..++
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD------KLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC------EEEcCCCcCCCcChhHhccCC
Confidence 46899999999999987777889999999999999999976667778888887 669999999988877 89999
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
+|+.|++++|.+. .++...|..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 132 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999998 56664469999999999999999977777899999999999999998765
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.6e-19 Score=130.31 Aligned_cols=140 Identities=24% Similarity=0.266 Sum_probs=119.8
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+++.++. ++.++
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT------YLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC------EEECCCCccCccCHHHhccCc
Confidence 35799999999999986666788999999999999999976666678888887 669999999988777 78899
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCC
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKF 160 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 160 (171)
+|+.|++++|.++ .++...++.+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|.+
T Consensus 158 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 158 NLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 9999999999998 555554688999999999999999877777899999999999999998877753
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=127.96 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=97.2
Q ss_pred ceeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++.|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|+ +|++++|.+++.++. ++.+++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN------EILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC------EEECCCCccCccCHhHhcCCcC
Confidence 45677777777776533 3467777888888888887765555677777776 558888888777666 777788
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
|++|++++|.+.+..|.. |..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 107 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 888888888887444444 4777888888888888876667777788888888888887654
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.2e-19 Score=125.43 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=118.0
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
|.-+.++++++.++. +|..+. +.++.|++++|.+++..+..|..+++|+ .|++++|.+++..+. +..+++
T Consensus 11 C~~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~------~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLR------RIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp EETTEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCC------EEECCSSCCCEECTTTTTTCSS
T ss_pred ECCCEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCC------EEECCCCcCCCcCHHHhhCCcC
Confidence 445678999999986 666543 7899999999999976666888888888 669999999998777 999999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
|++|++++|.++ .+|...|..+++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+.
T Consensus 82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 999999999998 78887779999999999999999988888999999999999999999876663
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.3e-19 Score=144.18 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=119.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
++++|++++|.+++..+.+|..+++|++|++++|.+++..+.+|.++++|+ +|++++|++++.++. ++.+++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~------~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC------EEEccCCcCCCCCHHHhcCCCCC
Confidence 688999999999987677899999999999999999976677888888888 669999999998877 8999999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++|++++|.++ .++...|+.+++|+.|++++|.++. ..|..+..+++|++|++++|.+.+..|
T Consensus 127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99999999998 5666546999999999999999875 457788999999999999999987665
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.7e-19 Score=130.12 Aligned_cols=137 Identities=22% Similarity=0.202 Sum_probs=88.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEee
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFS 77 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~ 77 (171)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++ ++.. ..+++|+.|+ +|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 456777777777776556666667777777777666653 2221 3344444332 34466777
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|++++.++. +..+++|++|++++|.++ .+|...|..+++|+.|++++|+++...+..+..+++|+.|++++|.+.
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 7777766655 677777777777777776 455555567777777777777777544445667777777777777776
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=137.14 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=107.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
++++|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+ +|++++|.+++.++. ++.+++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE------HLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCSSCCHHHHTTCTTC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC------EEECCCCcCCcCCHhHhCCCccC
Confidence 688999999999876666889999999999999999977777888888887 558888888876666 7778888
Q ss_pred cEEEccCCcccccCCC-hhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEccccccccccC
Q 038012 95 THLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++|++++|.+. .+|. ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..|
T Consensus 127 ~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 127 TFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 88888888887 5665 33577888888888887 4665556677788888888888888777655
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.3e-18 Score=124.46 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=121.6
Q ss_pred CCcccceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC
Q 038012 8 SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY 87 (171)
Q Consensus 8 ~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~ 87 (171)
..+..-.|.-+.++++++.+.. +|..+. ++|++|++++|.+++..|..|..+++|+ +|++++|.++.+++.
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLK------ELYLGSNQLGALPVG 82 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTT
T ss_pred cCCCCCEEeCCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCc------EEECCCCCCCCcChh
Confidence 3446666888899999999875 666543 8899999999999988788888888888 669999999888777
Q ss_pred -CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 88 -LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 88 -~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+..+++|++|++++|.++ .++...|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+.+..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred hcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 899999999999999998 677665789999999999999999 778889999999999999999986554
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.3e-18 Score=127.18 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=105.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF 76 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l 76 (171)
.++++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|+.|+ +|++|++
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence 4566666666666653333445566666666666666644444455555555444 4668899
Q ss_pred ecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
++|.+++.++. ++.+++|+.|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99999988777 899999999999999998 5666556899999999999999997666678999999999999998754
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=9.6e-19 Score=121.94 Aligned_cols=134 Identities=18% Similarity=0.291 Sum_probs=110.7
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
|.-++++++++.+.. +|..+. ..+++|++++|.+++..+. .|..++.|+ +|++++|.+++..+. ++.++
T Consensus 8 C~~~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV------KLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp EETTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC------EEECCSSCCCCBCTTTTTTCT
T ss_pred ECCCEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCC------EEECCCCCCCCcCHhHcCCcc
Confidence 444788999999975 676554 3899999999999865544 377888887 669999999998776 99999
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+|++|++++|.+++..+.. |..+++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999998544444 5899999999999999998888899999999999999999876544
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=123.02 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=117.1
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-hhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
|.-+++++++|.++. +|..+ ...+++|++++|.+++..+ ..|..++.|+ +|++++|.++++.+. +..++
T Consensus 11 C~~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~------~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 11 CEGTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLR------KINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp EETTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCC------EEECCSSCCCEECTTTTTTCT
T ss_pred ECCCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCC------EEECCCCcCCEECHHHhCCCC
Confidence 555689999999986 67654 3457899999999996544 4577888887 669999999998886 99999
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCC
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSN 162 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~ 162 (171)
+|++|++++|.+. .++...|..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..| .+..
T Consensus 82 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 82 GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp TCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 9999999999998 5666557999999999999999998888999999999999999999998766 3443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.5e-18 Score=128.77 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=90.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCc--cchhhhcCCCcceec-----------------cccEEEe
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST--IPEFLADFSNLTSFI-----------------SAIFMDF 76 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~-----------------~l~~l~l 76 (171)
++++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|+.|+ +|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 578888888888864444567888888888888887632 245555666666555 4566677
Q ss_pred ecccccccCC-C-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEcccccc
Q 038012 77 SNNIFSGAIP-Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 77 ~~n~~~~~~~-~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l 153 (171)
++|.+++..+ . +..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+ ..|..+..+++|+.|++++|.+
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 7777666544 2 666666666666666665433333 3566666666666666654 3455556666666666666666
Q ss_pred ccccC
Q 038012 154 DGQIT 158 (171)
Q Consensus 154 ~~~~p 158 (171)
.+..|
T Consensus 188 ~~~~~ 192 (306)
T 2z66_A 188 EQLSP 192 (306)
T ss_dssp CEECT
T ss_pred CCcCH
Confidence 55444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=9.5e-19 Score=136.10 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=123.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.+++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+ .|++++|.+++..+. ++.+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL------KLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCEECGGGGTTCTT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC------EEECCCCccCCcChhHhcCccc
Confidence 4799999999999988888899999999999999999987788888888888 669999999988777 899999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
|++|++++|.+.+..|.. +..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhh-ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999998655666 59999999999999999976666789999999999999999988874
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.4e-18 Score=127.13 Aligned_cols=140 Identities=22% Similarity=0.172 Sum_probs=117.0
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN 78 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~ 78 (171)
+++++++++++.++. +|..+. +.++.|++++|.+++..+..|..+++|+.|+ +|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC
Confidence 578999999999986 665553 7899999999999987788899999998776 688888888
Q ss_pred ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|.++.++..+..+++|++|++++|.++ .++...|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 888866555888899999999999998 5665546899999999999999987666778889999999999999885444
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2.4e-18 Score=134.10 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=78.5
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------cccEEEe
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------SAIFMDF 76 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------~l~~l~l 76 (171)
++++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|+ +|++|++
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 344444444444433333344444444444444444432223333444333332 3455566
Q ss_pred ecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 77 SNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 77 ~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
++|.+++. +.+..+++|+.|++++|.+.+..|.. |..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 204 ~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 204 GMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp TTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccccc-ccccccccccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 66655543 33555666666667777666333434 47777777777777777766666777777777777777777644
Q ss_pred cC
Q 038012 157 IT 158 (171)
Q Consensus 157 ~p 158 (171)
.+
T Consensus 282 ~~ 283 (452)
T 3zyi_A 282 PH 283 (452)
T ss_dssp CT
T ss_pred Ch
Confidence 43
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2e-18 Score=128.06 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=92.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-hhhhcCCCcceec------------------cccEEE
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFI------------------SAIFMD 75 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~------------------~l~~l~ 75 (171)
.++++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|+.|+ +|+.|+
T Consensus 78 ~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 356666666666653 44455566666666666666553322 3444555554443 345667
Q ss_pred eecccccc-cCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 76 FSNNIFSG-AIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 76 l~~n~~~~-~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
+++|.+++ ..+. +..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 77777765 3344 777778888888888777444445 47777888888888887766566677778888888888887
Q ss_pred ccccC
Q 038012 154 DGQIT 158 (171)
Q Consensus 154 ~~~~p 158 (171)
.+..|
T Consensus 236 ~~~~~ 240 (306)
T 2z66_A 236 MTSKK 240 (306)
T ss_dssp CBCSS
T ss_pred cccCH
Confidence 77666
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=135.41 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=76.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.| ++++|.++..++. +..+++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL------GLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE------ECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE------ECCCCcCCccCcccccCCCC
Confidence 367788888888887667778888888888888888887667778777777744 5555555444433 444455
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
|++|++++|.+.+..+.. |..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 106 LTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 555555555444222222 24444444444444444433333344444444444444433
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=9.5e-19 Score=130.41 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=85.2
Q ss_pred eeceeEEEeecCCCcccccccc--cCCCCCcEEEecCCCcCCccchhhhcC-----CCcceeccccEEEeecccccccCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSL--ANLQSLSEIYLDNINLSSTIPEFLADF-----SNLTSFISAIFMDFSNNIFSGAIP 86 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~~l~~l~l~~n~~~~~~~ 86 (171)
..++++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|+ +|++++|.+++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~------~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLK------VLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCC------EEEEESCSCCCCCT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCc------EEEeeCCCCccchH
Confidence 3568888888888887777765 7788888888888888865 7666665 5665 55666666666554
Q ss_pred C-CcCCCCccEEEccCCccccc--CCCh-hhhcCCCCcEEEcccCeeec--ccC-hhhhCCCCCcEEEcccccccccc
Q 038012 87 Y-LHILKNLTHLDLSNNLLTGV--ISST-PWEQLLNLVFVDLSNNSLNG--NIS-LFLFELSMLQRLQLADNQFDGQI 157 (171)
Q Consensus 87 ~-~~~l~~L~~l~l~~n~~~~~--l~~~-~~~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~ 157 (171)
. ++.+++|++|++++|.+.+. ++.. .++.+++|+.|++++|++++ ..+ ..+..+++|+.|++++|.+.+.+
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 4 66666666666666665432 1111 12455566666666666552 111 22345556666666666655544
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=132.35 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=50.4
Q ss_pred ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012 71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150 (171)
Q Consensus 71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (171)
|++|++++|.++.+ +.+..+++|+.|++++|.+.+..|.. |..+++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus 187 L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 44455555555432 23455556666666666665333333 46666666666666666665566666777777777777
Q ss_pred cccccccC
Q 038012 151 NQFDGQIT 158 (171)
Q Consensus 151 n~l~~~~p 158 (171)
|.+.+..+
T Consensus 265 N~l~~~~~ 272 (440)
T 3zyj_A 265 NNLTLLPH 272 (440)
T ss_dssp SCCCCCCT
T ss_pred CCCCccCh
Confidence 77664443
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=8.7e-19 Score=139.23 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
++++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+ +|++++|.+++.++. ++.+++|
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE------HLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECTTSCCCSCCHHHHTTCTTC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC------EEECCCCccCccCHHHhccCCCC
Confidence 689999999999987788899999999999999999977778888888888 668899988887777 8888899
Q ss_pred cEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012 95 THLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++|++++|.+.+ ..|.. ++.+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..|
T Consensus 101 ~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 999999998874 23444 4888889999998887433444 578888889999998888887666
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=2.6e-18 Score=138.00 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=115.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+++..+..++.+++|++|++++|.+++..|..|..+++|+ +|++++|.+++..|. ++.+++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~------~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS------NLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC------EeECCCCcccccChhhcCCccc
Confidence 4688999999999987777899999999999999999977778888888888 669999999888676 889999
Q ss_pred ccEEEccCCcccccCC-ChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012 94 LTHLDLSNNLLTGVIS-STPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~-~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|++|++++|.+. .++ .. ++.+++|+.|++++|.+.+ .+|..++++++|++|++++|.+.+..|
T Consensus 106 L~~L~L~~n~l~-~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 106 LENLVAVETKLA-SLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCEEECTTSCCC-CSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCEEEccCCccc-cccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 999999999987 444 44 5889999999999998875 468889999999999999998887655
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-18 Score=139.27 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=113.2
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.+++++|.+....+..+..++.|++|++++|.+++..|..|..++.|+ +|++++|.+++.++. ++.+++|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------KLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCC------EEECCCCcCCCCCHHHHcCCCCC
Confidence 457888888888875555577899999999999999877777888888888 669999999888777 7889999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
++|++++|.+. .+|..+|+.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999999998 67777678899999999999999887777888999999999999988754
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.6e-18 Score=125.04 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=90.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+ +|++++|.+++..+. +..+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC------EEECCCCccCccChhhhcCCcc
Confidence 3588888888888876666788888888888888888865556777777777 446666666665554 666666
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|++|++++|.+. .++...++.+++|+.|++++|.+.+. +|..+..+++|++|++++|.+.+.
T Consensus 102 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 666666666665 33332236666666666666666542 356666666666666666666543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=2.1e-18 Score=131.99 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.++++++.+....+..+..+++|++|++++|.+++..+..|..++.|+ +|++++|.+++.++. ++.+++|
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------KLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcC------EEECCCCCCCcCCHHHhcCCCCC
Confidence 577889999888764445578899999999999999876666888888887 669999999888777 8889999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
++|++++|.+. .+|..+|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999999997 77777668899999999999999877777888899999999999888753
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.7e-18 Score=134.63 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=118.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc-chhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|+ +|++++|.+++..+. ++.++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI------ILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC------EEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC------EEeCCCCccCccChhhccCcc
Confidence 36899999999999877889999999999999999997555 45788888887 669999999988776 99999
Q ss_pred CccEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccChh-hhCCCCCcEEEccccccccccC
Q 038012 93 NLTHLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNISLF-LFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 999999999999854333 23588999999999999999776766 8899999999999999987766
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=1.9e-18 Score=140.53 Aligned_cols=137 Identities=23% Similarity=0.288 Sum_probs=109.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..++.|+ +|++++|.+++.++. ++.+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK------VLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC------EEECCCCccCccChhhhccCCC
Confidence 4788999999999987777789999999999999999988888888888888 558888888877665 788888
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|++|++++|.+. .++...|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|
T Consensus 99 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 99 LTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 888888888887 4443335788888888888888877767777778888888888887776554
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=7.5e-18 Score=115.77 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=110.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
|..+.++++++.++. +|..+ .++++.|++++|.+++..+..|..+++|+ +|++++|.+++.++. ++.+++
T Consensus 7 C~~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLT------KLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp EETTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTT
T ss_pred eCCCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCccccc------EEECCCCcceEeChhHccCCCc
Confidence 455678888998875 55443 37899999999999866556677788887 669999999988777 789999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|+.|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 78 L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999998 5666556889999999999999996655567889999999999999887665
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=4.7e-18 Score=132.52 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=74.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+ +|++++|.++..++. +..+++|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN------TLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCSBCCTTTSSSCTTC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC------EEECCCCcCCccChhhhcccCCC
Confidence 688999999999987788899999999999999999877778888888888 446666666665555 6666666
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~ 126 (171)
++|++++|.+. .++...|..+++|+.|++++
T Consensus 150 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence 66666666665 34443334444444444444
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.6e-18 Score=136.54 Aligned_cols=139 Identities=19% Similarity=0.096 Sum_probs=83.2
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------- 69 (171)
++++|++++|.+++..|..+..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 68888888888887667788888888888888888875444 66777776655
Q ss_pred --------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCC
Q 038012 70 --------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140 (171)
Q Consensus 70 --------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 140 (171)
+|+.|++++|.+++..+. ++.+++|++|++++|.+.+..|..++..+++|+.|++++|.+++..+ ...+
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l 190 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVF 190 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCC
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccC
Confidence 234555555555554443 55566666666666666644444432245555555555555543211 1124
Q ss_pred CCCcEEEccccccccccC
Q 038012 141 SMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 141 ~~L~~L~l~~n~l~~~~p 158 (171)
++|+.|++++|.+.+.+|
T Consensus 191 ~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp TTCCEEECCSSCCCEECG
T ss_pred CCCCEEECCCCCCCCCCH
Confidence 444444444444444333
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=129.36 Aligned_cols=135 Identities=23% Similarity=0.231 Sum_probs=105.8
Q ss_pred ceeEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..|..+++|+ +|++++|.++.+.+. +..+++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR------YLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCEECTTTTTTCTT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC------EEECCCCcCCcCCHHHhCCCcC
Confidence 577889999988876666666 888999999999999866667788888777 668999999887776 888899
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhh---hCCCCCcEEEcccccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL---FELSMLQRLQLADNQFDGQI 157 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~ 157 (171)
|+.|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+.+..
T Consensus 114 L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCEEECCCCcccEECHHH-hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 999999999988433444 6888999999999998885433344 56888999999999887543
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.2e-18 Score=117.40 Aligned_cols=131 Identities=27% Similarity=0.236 Sum_probs=111.6
Q ss_pred eceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..++.|+ +|++++|.+++..+. +..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLK------KLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCC------EEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCC------EEECcCCcCchHHHHHHhhCC
Confidence 57999999999998 56888889999999999999999864 6666777776 779999999987666 77799
Q ss_pred CccEEEccCCcccccCC--ChhhhcCCCCcEEEcccCeeecccC---hhhhCCCCCcEEEcccccccc
Q 038012 93 NLTHLDLSNNLLTGVIS--STPWEQLLNLVFVDLSNNSLNGNIS---LFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~~ 155 (171)
+|++|++++|.++ .++ .. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+..
T Consensus 96 ~L~~L~Ls~N~l~-~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLK-DISTLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCC-SSGGGGG-GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCccC-cchhHHH-HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999999998 444 44 5899999999999999996544 478999999999999998763
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=3e-18 Score=123.00 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=86.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCCccchhhhcCCCcceeccccEEEeec-ccccccCCC-CcCCC
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSSTIPEFLADFSNLTSFISAIFMDFSN-NIFSGAIPY-LHILK 92 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~~l~~l~l~~-n~~~~~~~~-~~~l~ 92 (171)
++++|++++|.+++..+..+..+++|+.|++++|. ++...+..|..+++|+ +|++++ |.++..++. +..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~------~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT------HIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC------EEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc------EEECCCCCCeeEcCHHHhCCCC
Confidence 68888888888887656678888888888888886 7754455777777777 446666 666666554 66666
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCc---EEEcccC-eeecccChhhhCCCCCc-EEEccccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLV---FVDLSNN-SLNGNISLFLFELSMLQ-RLQLADNQFD 154 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~ 154 (171)
+|++|++++|.+. .+|. |..+.+|+ .|++++| .+++..+..+..+++|+ .|++++|.+.
T Consensus 106 ~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 106 LLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 6777776666665 3554 35555555 6666666 55544444555666666 6666666555
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=6.9e-19 Score=142.57 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=62.0
Q ss_pred ccccccCCCCCcEEEecCCCcCCc-----------------cchhhh--cCCCcceeccccEEEeecccccccCCC-CcC
Q 038012 31 IHPSLANLQSLSEIYLDNINLSST-----------------IPEFLA--DFSNLTSFISAIFMDFSNNIFSGAIPY-LHI 90 (171)
Q Consensus 31 ~~~~~~~~~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~ 90 (171)
+|..++.+++|++|++++|.+++. +|+.++ .+++|+ +|++++|.+.+..|. ++.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~------~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT------DVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC------EEEEECCTTCSSCCTTTTT
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC------EEEecCCcCCccChHHHhc
Confidence 444555555555555555555543 455444 444444 335555555554444 555
Q ss_pred CCCccEEEccCCc-ccc-cCCChhhhcC------CCCcEEEcccCeeecccCh--hhhCCCCCcEEEccccccccccC
Q 038012 91 LKNLTHLDLSNNL-LTG-VISSTPWEQL------LNLVFVDLSNNSLNGNISL--FLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 91 l~~L~~l~l~~n~-~~~-~l~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+++|++|++++|. +++ .+|..+ +.+ ++|+.|++++|.++ .+|. .++.+++|++|++++|.+.|.+|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 5555555555554 544 444443 333 45555555555555 4444 45555555555555555555554
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=4.1e-18 Score=122.33 Aligned_cols=141 Identities=20% Similarity=0.126 Sum_probs=99.7
Q ss_pred eeceeEEEeecCC-CcccccccccCCCCCcEEEecC-CCcCCccchhhhcCCCcceec----------------ccc---
Q 038012 14 RCDKAVFSLAQYF-LSGPIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSFI----------------SAI--- 72 (171)
Q Consensus 14 ~~~l~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~----------------~l~--- 72 (171)
..++++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|+.++ +|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence 3567788888886 6654455677778888888877 777755455666777776554 233
Q ss_pred EEEeecc-cccccCCC-CcCCCCcc-EEEccCCcccccCCChhhhcCCCCcEEEcccCe-eecccChhhhCC-CCCcEEE
Q 038012 73 FMDFSNN-IFSGAIPY-LHILKNLT-HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFEL-SMLQRLQ 147 (171)
Q Consensus 73 ~l~l~~n-~~~~~~~~-~~~l~~L~-~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~ 147 (171)
.+++++| .++++++. +..+++|+ .+++++|.+. .+|...|.. .+|+.|++++|+ ++...+..+..+ ++|+.|+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 7777777 77776665 77777888 8888888877 677665444 678888888884 775556667777 8888888
Q ss_pred ccccccccc
Q 038012 148 LADNQFDGQ 156 (171)
Q Consensus 148 l~~n~l~~~ 156 (171)
+++|.+.+.
T Consensus 212 l~~N~l~~l 220 (239)
T 2xwt_C 212 VSQTSVTAL 220 (239)
T ss_dssp CTTCCCCCC
T ss_pred CCCCccccC
Confidence 888887643
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=130.95 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=84.4
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
+++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.| ++++|.++..++. +..+++|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL------ELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE------ECCSSCCSSCCTTTSCSCSSC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE------ECCCCcCCeeCHhHhhccccC
Confidence 57788888888887777788888888889998888887666778888877744 5555555555444 5555555
Q ss_pred cEEEccCCccc------------------------ccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012 95 THLDLSNNLLT------------------------GVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150 (171)
Q Consensus 95 ~~l~l~~n~~~------------------------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (171)
++|++++|.+. +.++...|..+++|+.|++++|.++ .+| .+..+++|+.|++++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence 55555555554 2333322344455555555555544 222 244555555555555
Q ss_pred cccccccC
Q 038012 151 NQFDGQIT 158 (171)
Q Consensus 151 n~l~~~~p 158 (171)
|.+.+..|
T Consensus 217 N~l~~~~~ 224 (440)
T 3zyj_A 217 NHLSAIRP 224 (440)
T ss_dssp SCCCEECT
T ss_pred CccCccCh
Confidence 55554443
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=5e-18 Score=124.24 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=89.5
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+ +|++++|.+.+..+. ++.++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTSCCCCSTTCCCTTCT
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc------EEECCCCCccccCchhcccCC
Confidence 45799999999999876677888999999999999999877667888888887 557777777766554 77777
Q ss_pred CccEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCC
Q 038012 93 NLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS 141 (171)
Q Consensus 93 ~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 141 (171)
+|++|++++|.+.+ .+|.. +..+++|+.|++++|++++..+..+..++
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 77777777777763 24555 37777777777777777655444444333
No 53
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=115.97 Aligned_cols=129 Identities=25% Similarity=0.352 Sum_probs=108.2
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
|.-++++++++.++. +|..+. ..+++|++++|.++ .+|+.|..++.|+ .|++++|.++++.+. +..+++
T Consensus 10 C~~~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~------~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLT------LIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp EETTEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred eCCCEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCC------EEECCCCcCCEeCHhHccCCCC
Confidence 344678999999885 665543 68999999999998 6788888888887 669999999988777 999999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|+.|++++|.++ .++...|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 80 L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999998 555544699999999999999999666667889999999999999875
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=9.8e-18 Score=131.30 Aligned_cols=134 Identities=22% Similarity=0.195 Sum_probs=78.5
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..++++|++++|.+.+..|..|..+++|+.|++++|.++...+..|..+++|+.| ++++|.+.+..+. +..++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL------DISENKIVILLDYMFQDLY 128 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE------ECTTSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE------ECCCCccccCChhHccccc
Confidence 3578888888888887777888888888888888888885544566777777744 5555555444443 44455
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|+.|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 129 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred cCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 5555555555544222222 344444455555444444333333444444444444444443
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-17 Score=133.08 Aligned_cols=140 Identities=20% Similarity=0.235 Sum_probs=87.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF 76 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l 76 (171)
.++++|++++|.+.+..+..+..+++|+.|++++|.+++..|..|+.++.|+.|+ +|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 3566777777777665555666777777777777777665555566666666443 3456667
Q ss_pred ecccccccCCC-CcCCCCccEEEccCCcccccCC----------------------------------------------
Q 038012 77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVIS---------------------------------------------- 109 (171)
Q Consensus 77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~---------------------------------------------- 109 (171)
++|.+++.++. ++.+++|++|++++|.+.+ ++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 77766666555 6666666666666665542 11
Q ss_pred --------------ChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 110 --------------STPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 110 --------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 234 L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 234 LTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred CCEEECCCCCCCCChh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence 11 24555666666666666666666666666677777766666653
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.5e-17 Score=115.13 Aligned_cols=132 Identities=19% Similarity=0.190 Sum_probs=110.6
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccE
Q 038012 18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTH 96 (171)
Q Consensus 18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~ 96 (171)
+.++++++.++. +|..+ .+++++|++++|.+++..+..|..+++|+ +|++++|.+++.++. +..+++|++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLT------QLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCc------EEECCCCccCccChhhcCCCCCcCE
Confidence 456777888875 55443 46899999999999966666677888887 669999999988777 789999999
Q ss_pred EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
|++++|.++ .++...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 81 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 81 LNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred EECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 999999998 66666568999999999999999977677789999999999999999865553
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=2.6e-17 Score=125.92 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=79.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS 77 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~ 77 (171)
++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+.|+ +|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 455555555555544444555555555555555555544444455555554433 34456666
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCC----------------------------------------------
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS---------------------------------------------- 110 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~---------------------------------------------- 110 (171)
+|.+++..+. ++.+++|+.|++++|.+.+ ++.
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 6666665554 6666666666666665542 110
Q ss_pred -------------hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 111 -------------TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 111 -------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287 (390)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence 0124556666666666666665566666777777777777766643
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=128.38 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=69.3
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch--hhhcCCCcceec-------------------cccEE
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE--FLADFSNLTSFI-------------------SAIFM 74 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~-------------------~l~~l 74 (171)
++++|++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++|+.++ +|+.+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 34445555554443222224444555555555554442 222 344444444332 23444
Q ss_pred EeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc---------------------
Q 038012 75 DFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN--------------------- 132 (171)
Q Consensus 75 ~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~--------------------- 132 (171)
++++|.+++..+. ++.+++|++|++++|.+. .+|...+..+++|+.|++++|.+++.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 4444444444333 444444444444444443 33333334455666666666665532
Q ss_pred ----------cChhhhCCCCCcEEEccccccccccCC
Q 038012 133 ----------ISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 133 ----------~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
+|..+..+++|+.|++++|.+. .+|.
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence 2334566777788888887776 4443
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.9e-17 Score=114.77 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=108.5
Q ss_pred ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l 91 (171)
...+++.|++++|.+.. ++ .+..+++|++|++++|.++ .++.+..+++|+ +|++++|.+++..+. ++.+
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~------~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLE------RLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCC------EEEEECTTCBGGGSCCCTTC
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCC------EEEeECCccCcccChhhcCC
Confidence 34578999999999984 55 6888999999999999776 334677777777 669999999875555 8899
Q ss_pred CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eecccChhhhCCCCCcEEEccccccccccCCCC
Q 038012 92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFELSMLQRLQLADNQFDGQITKFS 161 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 161 (171)
++|++|++++|.+.+..+.. +..+++|+.|++++|+ +. .++ .+..+++|+.|++++|.+.+ ++.+.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~ 178 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIE 178 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGG
T ss_pred CCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhc
Confidence 99999999999998656666 4889999999999997 65 445 68899999999999999875 44433
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.4e-18 Score=129.48 Aligned_cols=139 Identities=23% Similarity=0.161 Sum_probs=95.6
Q ss_pred cceeceeEEEeecCCCcccccccccCC-----CCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccccccc--
Q 038012 12 NVRCDKAVFSLAQYFLSGPIHPSLANL-----QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA-- 84 (171)
Q Consensus 12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~-- 84 (171)
+...++++|++++|.+++. |..+..+ ++|++|++++|.+++..|..|..+++|+ +|++++|++.+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS------TLDLSDNPELGERG 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC------EEECCSCTTCHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC------EEECCCCCcCcchH
Confidence 4556788889988888875 6666666 8888888888888876667777777777 557777776543
Q ss_pred -CCCC--cCCCCccEEEccCCcccc--cCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012 85 -IPYL--HILKNLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 85 -~~~~--~~l~~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++.+ +.+++|++|++++|.+++ .++...+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+. .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 2222 667777777777777762 2333444566777777777777776543 34455677777777777766 444
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=8.1e-18 Score=135.13 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=110.6
Q ss_pred EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEE
Q 038012 19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHL 97 (171)
Q Consensus 19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l 97 (171)
+.+.++.+++. +|..+. .++++|+|++|.++...+.+|.++++|+ +|++++|.++++++. ++.+++|++|
T Consensus 35 ~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~------~L~Ls~N~i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ------VLDLSRCEIQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCC------EEECCCCcCCCcChhHhcCCCCCCEE
Confidence 56777777875 665442 5799999999999976667899999888 669999999998887 9999999999
Q ss_pred EccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 98 DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 98 ~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
++++|.++ .+|...|.++++|++|++++|++++..+..|+++++|++|++++|.+.+
T Consensus 106 ~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 106 ILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp ECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred EccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 99999998 6787768999999999999999997767789999999999999999875
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3.5e-18 Score=127.57 Aligned_cols=113 Identities=19% Similarity=0.097 Sum_probs=66.5
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------- 69 (171)
++++|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence 67788888888877666677778888888888887764333 66666666555
Q ss_pred --------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 70 --------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 70 --------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
+|+.+++++|.+++..+. ++.+++|++|++++|.+.+..+...+..+++|+.|++++|.++
T Consensus 113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 234444444544444333 5555566666666666553333332234444444444444443
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=8.2e-18 Score=135.13 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=82.1
Q ss_pred eeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccc-cCCC-CcCCCC
Q 038012 17 KAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY-LHILKN 93 (171)
Q Consensus 17 l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~-~~~l~~ 93 (171)
++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+++ ..+. ++.+++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL------NTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------CEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC------CEEECCCCcCCCcchHHhhccCCC
Confidence 4444444444433322 233444444444444444444344444444444 466778887776 3444 777788
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|+.|++++|.+.+..|.. +..+++|+.|++++|++++..|..+..+++|+.|++++|.+...
T Consensus 475 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 888888888777544555 47778888888888888777777777888888888888877743
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=132.73 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=101.2
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+++..+..++.+++|++|++++|.+++..+..|..+++|+ +|++++|.+++.++. ++.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCC------EEeCcCCcCCccCHhhhcCccc
Confidence 4688899999999876677888899999999999988876667788888887 557777777776655 777777
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|++|++++|.+. .++...++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|
T Consensus 102 L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 777777777776 4444224777777777777777765 356777777777777777777665443
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=1.2e-17 Score=134.22 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=86.9
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS 77 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~ 77 (171)
++++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|+ +|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 678888888888877777888888888888888888877778888888887553 33444555
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCc--EEEccccccc
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ--RLQLADNQFD 154 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~l~~n~l~ 154 (171)
+|.+++..+. ++.+++|++|++++|.+.+..... +..+++|+.|++++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 5555444333 455555555555555554211111 13355555555555555544445555555555 5555555555
Q ss_pred cccC
Q 038012 155 GQIT 158 (171)
Q Consensus 155 ~~~p 158 (171)
+..|
T Consensus 193 ~~~~ 196 (606)
T 3t6q_A 193 GIEP 196 (606)
T ss_dssp EECT
T ss_pred ccCh
Confidence 5444
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.1e-17 Score=115.48 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=109.3
Q ss_pred ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l 91 (171)
..+++++|++++|.+.. ++.+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+++..+. ++.+
T Consensus 64 ~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~------~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT------LLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC------EEECCSSBCBGGGHHHHTTC
T ss_pred cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC------EEEecCCccCcHhHHHHhhC
Confidence 34689999999997764 45788999999999999999977788888888887 669999999986666 8999
Q ss_pred CCccEEEccCCc-ccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 92 KNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 92 ~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
++|++|++++|. +. .+| . +..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus 136 ~~L~~L~L~~n~~i~-~~~-~-l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 136 PKVNSIDLSYNGAIT-DIM-P-LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEECCSCTBCC-CCG-G-GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCEEEccCCCCcc-ccH-h-hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 999999999998 65 666 4 5999999999999999985 34 78899999999999999864
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.6e-17 Score=122.55 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=106.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceec---------------cccEEEeec
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFI---------------SAIFMDFSN 78 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~---------------~l~~l~l~~ 78 (171)
++++|++++|.+.+..+..+..+++|+.|++++|.++. ..+..+..+++|+.++ +|+.+++++
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence 45566666666665445556777777788887777753 4556677777777664 577888888
Q ss_pred ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012 79 NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157 (171)
Q Consensus 79 n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 157 (171)
|.+++..+. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence 888887666 888889999999999888444444 588889999999999888 67888888899999999999887554
Q ss_pred C
Q 038012 158 T 158 (171)
Q Consensus 158 p 158 (171)
+
T Consensus 280 ~ 280 (330)
T 1xku_A 280 S 280 (330)
T ss_dssp T
T ss_pred h
Confidence 4
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=139.45 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=105.7
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc-chhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.++++|++++|.+++..+..+..+++|++|++++|...+.+ |..|..+++|+ +|++++|.+++..+. ++.++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~------~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR------ILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC------EEECTTCCCCEECTTSSCSCS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC------EEECCCCcCcccCHhHccCCc
Confidence 57889999999998877888999999999999999665555 67788888887 558888888777666 78888
Q ss_pred CccEEEccCCcccccCCCh-hhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012 93 NLTHLDLSNNLLTGVISST-PWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+|++|++++|.+.+.++.. .++.+++|+.|++++|.+.+..+ ..++++++|++|++++|.+.+..|
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 8888888888877544443 24777888888888888776544 467788888888888887766544
No 69
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=5.5e-18 Score=113.26 Aligned_cols=126 Identities=24% Similarity=0.236 Sum_probs=91.4
Q ss_pred eceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++. +.+..+++|+ +|++++|.+++..+. ++.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLK------KLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCC------EEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCC------EEECCCCcccchHHHHhhhCC
Confidence 56788888888887 56777777888888888888888754 5555666665 668888888775555 66678
Q ss_pred CccEEEccCCccccc-CCChhhhcCCCCcEEEcccCeeecccC---hhhhCCCCCcEEEcc
Q 038012 93 NLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNIS---LFLFELSMLQRLQLA 149 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~-l~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 149 (171)
+|+++++++|.+.+. .+.. +..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888888888731 1244 4778888888888888875544 467778888888765
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=4.1e-17 Score=122.38 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=101.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceec---------------cccEEEee
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFI---------------SAIFMDFS 77 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~---------------~l~~l~l~ 77 (171)
.++++|++++|.+.+..+..+..+++|+.|++++|.++. ..+..+..+ +|+.++ +|+.|+++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECC
Confidence 356666666666665444556777777777777777752 344455444 444333 46677888
Q ss_pred cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
+|.+++..+. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+.+.
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 8888877665 888888999999999888433334 588889999999999888 6787888889999999999988755
Q ss_pred cC
Q 038012 157 IT 158 (171)
Q Consensus 157 ~p 158 (171)
.+
T Consensus 280 ~~ 281 (332)
T 2ft3_A 280 GV 281 (332)
T ss_dssp CT
T ss_pred Ch
Confidence 44
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=6.5e-17 Score=129.90 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=68.7
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------cccEEE
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------SAIFMD 75 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------~l~~l~ 75 (171)
.++++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|+.++ +|++++
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 34555555555555 2455555556666666666665544444555555554332 234444
Q ss_pred eecccccccC--CC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccCh-hhhCCCCCcEEEcccc
Q 038012 76 FSNNIFSGAI--PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL-FLFELSMLQRLQLADN 151 (171)
Q Consensus 76 l~~n~~~~~~--~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n 151 (171)
+++|.+++.. +. ++.+++|+++++++|.+.+..|.. +..+++|+.|++++|++.+..+. .+..+++|+.|++++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 4444444332 22 444444445555444444322333 34455555555555555433332 2445555555555555
Q ss_pred ccccccC
Q 038012 152 QFDGQIT 158 (171)
Q Consensus 152 ~l~~~~p 158 (171)
.+.+..|
T Consensus 436 ~l~~~~~ 442 (606)
T 3t6q_A 436 LLDISSE 442 (606)
T ss_dssp CCBTTCT
T ss_pred ccCCcCH
Confidence 5544433
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=128.95 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=104.6
Q ss_pred cceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceeccccEEEeecccccc-cCCC-
Q 038012 12 NVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY- 87 (171)
Q Consensus 12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~- 87 (171)
+...++++|++++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+ +|++++|.+++ .+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~------~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ------QLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC------EEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC------EEECCCCcCCcccccch
Confidence 345678899999999988788888889999999999999985 4556777888887 66888888887 4444
Q ss_pred CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+..+++|+.|++++|.+++.+|..+ . ++|+.|++++|+++ .+|..+..+++|++|++++|.+.. +|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l-~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCL-P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSC-C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred hccCccCCEEECcCCCCCcchhhhh-c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 7777888888888888865554432 1 57888888888887 667766788888888888888773 44
No 73
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=125.93 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=116.8
Q ss_pred ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l 91 (171)
...+++.|++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+ .|++++|.++...+. +..+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE------VLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCEECTTTTTTC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC------EEECCCCcccEECHHHhCCc
Confidence 456899999999999987777899999999999999999976666788888888 669999999998777 9999
Q ss_pred CCccEEEccCCcccccCCChhh---hcCCCCcEEEcccCeeecccChhhhCCCC--CcEEEccccccc
Q 038012 92 KNLTHLDLSNNLLTGVISSTPW---EQLLNLVFVDLSNNSLNGNISLFLFELSM--LQRLQLADNQFD 154 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~ 154 (171)
++|+.|++++|.+. .+|...| ..+++|+.|++++|+++...+..+..++. ++.|++++|++.
T Consensus 136 ~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999999998 7888766 56899999999999999665567888887 488999999875
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=1.5e-16 Score=119.08 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=79.6
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
+++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.| ++++|.++..+..+. ++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL------YLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE------ECCSSCCSBCCSSCC--TTCC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE------ECCCCcCCccChhhc--cccc
Confidence 57788888888887666678888999999999999887778888888888744 555555554333222 4455
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeeec--ccChhhhCCCCCcEEEccccccc
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG--NISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 125 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 125 ELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp EEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 5555555554 3333333555555555555555432 33444444555555444444443
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=8.7e-18 Score=139.97 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=102.4
Q ss_pred ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCC-ccchhhhcCC-CcceeccccEEEeecccccccCC--C
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSS-TIPEFLADFS-NLTSFISAIFMDFSNNIFSGAIP--Y 87 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~-~L~~L~~l~~l~l~~n~~~~~~~--~ 87 (171)
...+++.|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..+..++ .+..+.+|+.|++++|.++.++. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 56789999999999998899999999999999999998 887 7888776665 22222233366777777775544 3
Q ss_pred CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCC-CcEEEccccccccccC
Q 038012 88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM-LQRLQLADNQFDGQIT 158 (171)
Q Consensus 88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p 158 (171)
++.+++|+.|++++|.+. .+| . ++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred hhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 677777777777777776 666 3 467777777777777776 56666666666 777777777666 444
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=1.3e-16 Score=129.75 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=72.6
Q ss_pred ceeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------cccEE
Q 038012 16 DKAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------SAIFM 74 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------~l~~l 74 (171)
+++.|++++|.+.+.++ ..+..+++|++|++++|.+++..+..|..++.|+.++ +|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 45555555555543333 3344455555555555544433333333333333221 34566
Q ss_pred EeecccccccCCC-CcCCCCccEEEccCCccccc----C---CChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEE
Q 038012 75 DFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGV----I---SSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL 146 (171)
Q Consensus 75 ~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~----l---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 146 (171)
++++|.+++.++. +..+++|++|++++|.+++. + |...+..+++|+.|++++|+++...+..|..+++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 6666666665555 66666666666666666521 0 11113555666666666666663333346666666666
Q ss_pred Ecccccccc
Q 038012 147 QLADNQFDG 155 (171)
Q Consensus 147 ~l~~n~l~~ 155 (171)
++++|.+.+
T Consensus 566 ~Ls~N~l~~ 574 (680)
T 1ziw_A 566 DLGLNNLNT 574 (680)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCCCCc
Confidence 666666653
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=129.71 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=123.0
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
..++++|++++|.+.+..+..+..+++|++|++++|.++...|..|..+++|+ +|++++|.+++..+. ++.++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTSCCCCSTTCSCTTCT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc------cccccccccccCCCccccccc
Confidence 45799999999999987778899999999999999999977778888888888 669999999987765 99999
Q ss_pred CccEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC----cEEEccccccccccCC
Q 038012 93 NLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML----QRLQLADNQFDGQITK 159 (171)
Q Consensus 93 ~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~p~ 159 (171)
+|++|++++|.+.+ .+|.. ++.+++|+.|++++|.+++..+..++.+++| +.+++++|.+.+..|.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred cccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 99999999999984 46777 4999999999999999998777888888888 8999999999887764
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.6e-16 Score=118.21 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=64.7
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN 78 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~ 78 (171)
.++++|++++|.+.+ ++. +..+++|+.|++++|.+++ + +.+..+++|+.|+ +|+.|++++
T Consensus 63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 456666666666665 233 5666666666666666653 2 2455555555332 233444444
Q ss_pred ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
|.+++..+ ++.+++|++|++++|.+. .++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred CccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 44443322 444444555555555444 2222 2444455555555554443211 4444555555555555443
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=127.55 Aligned_cols=132 Identities=18% Similarity=0.240 Sum_probs=110.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.++++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+ +|++++|.++.++.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE------YLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC------EEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC------EEecCCCceeecCcc--ccCCc
Confidence 6789999999999887777899999999999999999977788888888888 669999999876544 78899
Q ss_pred cEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC--cEEEcccccc--ccccC
Q 038012 95 THLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML--QRLQLADNQF--DGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~p 158 (171)
++|++++|.+.+ .+|.. ++.+++|+.|++++|.+.+ ..+..+++| +.|++++|.+ .+..|
T Consensus 93 ~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp SEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred cEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc
Confidence 999999999984 35666 5999999999999998875 456677777 9999999988 55555
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.4e-16 Score=119.42 Aligned_cols=106 Identities=20% Similarity=0.269 Sum_probs=55.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+ +|++++|.++.+++.+. ++|+
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ------KLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC------EEECCSSCCCSCCSSCC--TTCC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC------EEECCCCcCCccCcccc--ccCC
Confidence 355566666655554444555666666666666666554455555555555 33555555544333222 4455
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
+|++++|.+. .++...|..+++|+.|++++|.++
T Consensus 127 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence 5555555554 334333355555555555555543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=123.61 Aligned_cols=138 Identities=20% Similarity=0.153 Sum_probs=63.8
Q ss_pred ceeEEEeecCCCcccccccc--cCCCCCcEEEecCCCcCCccc----hhhhcCCCcceec------------------cc
Q 038012 16 DKAVFSLAQYFLSGPIHPSL--ANLQSLSEIYLDNINLSSTIP----EFLADFSNLTSFI------------------SA 71 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~------------------~l 71 (171)
++++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|+.|+ +|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35556666665555555444 455555555555555554322 1222333333221 12
Q ss_pred cEEEeecccccc---cCCC--CcCCCCccEEEccCCcccccCCC---hhhhcCCCCcEEEcccCeeecccChhhhCC---
Q 038012 72 IFMDFSNNIFSG---AIPY--LHILKNLTHLDLSNNLLTGVISS---TPWEQLLNLVFVDLSNNSLNGNISLFLFEL--- 140 (171)
Q Consensus 72 ~~l~l~~n~~~~---~~~~--~~~l~~L~~l~l~~n~~~~~l~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--- 140 (171)
++|++++|++.+ ..+. ++.+++|++|++++|.++ .++. .+++.+++|++|++++|.+.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 234445444432 1111 234444444444444443 1221 123455566666666666655445444444
Q ss_pred CCCcEEEccccccc
Q 038012 141 SMLQRLQLADNQFD 154 (171)
Q Consensus 141 ~~L~~L~l~~n~l~ 154 (171)
++|++|++++|.+.
T Consensus 251 ~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 251 SALNSLNLSFAGLE 264 (310)
T ss_dssp TTCCCEECCSSCCC
T ss_pred CcCCEEECCCCCCC
Confidence 45666666666555
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.4e-16 Score=127.24 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=103.9
Q ss_pred cceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceeccccEEEeecccccc-cCCC-
Q 038012 12 NVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY- 87 (171)
Q Consensus 12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~- 87 (171)
+...++++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|+ .|++++|.+++ .++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE------TLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC------EEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC------EEECCCCcCCCccChhh
Confidence 445678999999999998788888999999999999999985 2345677777777 66888888887 4444
Q ss_pred CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+..+++|+.+++++|.+++..|..+ . ++|+.|++++|+++ .+|..+..+++|+.|++++|.+.. +|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l-~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCL-P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSC-C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred hcCcccCCEEECCCCCCCcchhhhh-c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence 7777888888888888875544432 1 57888888888887 566666688888888888888874 44
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=121.35 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=104.0
Q ss_pred ceeEEEeecCCCcccc-cc--cccCCCCCcEEEecCCCcCCccchhh--hcCCCcceec---------------------
Q 038012 16 DKAVFSLAQYFLSGPI-HP--SLANLQSLSEIYLDNINLSSTIPEFL--ADFSNLTSFI--------------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~--------------------- 69 (171)
.++.+.+.++.+.... .. .+..++.|++|++++|.+++..|..+ ..+++|+.|+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4677888888876321 11 12345679999999999998888877 6777776554
Q ss_pred -cccEEEeecccccccCCC-CcCCCCccEEEccCCccccc--CC-ChhhhcCCCCcEEEcccCeeecccCh----hhhCC
Q 038012 70 -SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGV--IS-STPWEQLLNLVFVDLSNNSLNGNISL----FLFEL 140 (171)
Q Consensus 70 -~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~--l~-~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l 140 (171)
+|++|++++|.+.+.++. ++.+++|++|++++|.+.+. ++ ...++.+++|+.|++++|+++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 578888888888777766 88888888888888886531 22 1112677888888888888863 232 35788
Q ss_pred CCCcEEEccccccccccC
Q 038012 141 SMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 141 ~~L~~L~l~~n~l~~~~p 158 (171)
++|++|++++|.+.+..|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp CCCSSEECTTSCCCCCCC
T ss_pred CCCCEEECCCCCCCccch
Confidence 999999999999998755
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=1.6e-17 Score=131.89 Aligned_cols=133 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccccccc-CCC-CcCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA-IPY-LHIL 91 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~-~~~-~~~l 91 (171)
..++++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+ +|++++|.+++. .+. ++.+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK------YLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC------EEECTTCCCSSSCSSCSCTTC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc------EEECCCCcccccchhhhhhcc
Confidence 45799999999999987778899999999999999999977777788888888 568888888764 233 8888
Q ss_pred CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012 92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
++|++|++++|.+.+.+|...+..+++|+.|++++|.+++..|..+..+++|++|+++.|.
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 8888888888884446665445888888888888888887677666655444444444443
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=4.1e-16 Score=115.18 Aligned_cols=125 Identities=28% Similarity=0.346 Sum_probs=74.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.++++|++++|.+++. ++ +..+++|+.|++++|.+++ + +.+..+++|+ +|++++|.+++. +.+..+++|
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~------~L~L~~n~i~~~-~~l~~l~~L 136 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK------SLSLEHNGISDI-NGLVHLPQL 136 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC------EEECTTSCCCCC-GGGGGCTTC
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC------EEECCCCcCCCC-hhhcCCCCC
Confidence 4667777777777653 32 6667777777777777663 2 2355556555 556666666553 335556666
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 137 ~~L~l~~n~l~-~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 137 ESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CEEECCSSCCC-CC-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CEEEccCCcCC-cc-hh-hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 66666666665 23 22 3666666666666666654332 5566666666666666653
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.3e-16 Score=116.57 Aligned_cols=133 Identities=23% Similarity=0.258 Sum_probs=88.2
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEee
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFS 77 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~ 77 (171)
..++++|++++|.+.. ++ .+..+++|++|++++|.+++ +++ +..+++|+.|+ +|+.|+++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 3579999999999986 44 68899999999999999985 444 88888888554 45555555
Q ss_pred cccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 78 NNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 78 ~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
+|.+++.. .+..+++|++|++++|.+. .++. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+.
T Consensus 116 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDVT-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCch-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 55555432 2555556666666666655 2333 35666666666666666532 22 56666666666666666543
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.3e-16 Score=125.59 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=89.9
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
++++.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .++.|+ .|++++|.+++.+ ....+++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~------~L~Ls~N~l~~~~-~~~~l~~ 192 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE------HLNLQYNFIYDVK-GQVVFAK 192 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC------EEECTTSCCCEEE-CCCCCTT
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc------EEecCCCcccccc-ccccCCC
Confidence 3566777777777766666666777777777777777766666554 566665 5577777777653 3445777
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|++|++++|.++ .+|.. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 193 L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 193 LKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 777777777777 45555 4777777777777777774 5666777777777777777776
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.6e-16 Score=118.59 Aligned_cols=130 Identities=19% Similarity=0.165 Sum_probs=89.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .++.|+ +|++++|.+++.. ....+++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~------~L~L~~N~l~~~~-~~~~l~~ 192 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE------HLNLQYNFIYDVK-GQVVFAK 192 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC------EEECTTSCCCEEE-CCCCCTT
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC------EEECCCCcCcccc-ccccccc
Confidence 3466667777776665555666677777777777777655555443 455555 5577787777653 3344777
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|+.|++++|.++ .+|.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 193 L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 193 LKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 888888888877 56666 477778888888888777 45667777778888888888776
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.2e-16 Score=107.54 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=98.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++.|+ .|++++|.+++.++. +..+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT------ILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC------EEECCCCCccccCHHHhhCCcc
Confidence 4789999999999976666788999999999999999966556677888887 669999999988877 889999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS 134 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~ 134 (171)
|+++++++|.++ .+|...+..+++|+.+++++|.+.+..+
T Consensus 102 L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 102 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999998 6777766889999999999999986544
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=8.7e-16 Score=111.90 Aligned_cols=132 Identities=21% Similarity=0.231 Sum_probs=73.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------cccEEEeecc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---------------SAIFMDFSNN 79 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---------------~l~~l~l~~n 79 (171)
.+++.|++++|.++. ++ .+..+++|+.|++++|.+++. ++ +..+++|+.|+ +|+.|++++|
T Consensus 41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N 116 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN 116 (263)
T ss_dssp TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSS
T ss_pred CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCC
Confidence 356666666666654 33 456666666666666666643 33 55555555332 2335555555
Q ss_pred cccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 80 IFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 80 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
.+++. +.++.+++|+.|++++|.++ .++ . +..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 117 ~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 117 ELRDT-DSLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSBS-GGGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCC-hhhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 55543 23555566666666666665 333 2 35566666666666666543 4455566666666666665543
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2e-16 Score=108.53 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=105.1
Q ss_pred eceeEEEeecCCCcccccccccCCC-CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQ-SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.+++.|++++|.++. ++. +..+. +|+.|++++|.+++. +.+..++.|+ +|++++|.+++.++. +..++
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLK------TLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCC------EEECCSSCCCEECSCHHHHCT
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCC------EEECCCCcccccCcchhhcCC
Confidence 468999999999985 454 45554 999999999999853 5566666666 779999999988767 58999
Q ss_pred CccEEEccCCcccccCCC--hhhhcCCCCcEEEcccCeeecccCh----hhhCCCCCcEEEcccccccc
Q 038012 93 NLTHLDLSNNLLTGVISS--TPWEQLLNLVFVDLSNNSLNGNISL----FLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~ 155 (171)
+|++|++++|.+. .+|. . +..+++|+.|++++|.+. ..|. .+..+++|+.|+++.|....
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~-l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDP-LASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGG-GGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCC-cchhhHh-hhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999997 6665 4 589999999999999998 4555 48899999999999987653
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=8.5e-16 Score=122.67 Aligned_cols=124 Identities=21% Similarity=0.204 Sum_probs=57.6
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccE
Q 038012 18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTH 96 (171)
Q Consensus 18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~ 96 (171)
+++++++|.+++ +|..+. +++++|++++|.+++..+..|..+++|+ +|++++|.+++..+. ++.+++|++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELR------VLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCC------EEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCcc------EEECCCCCCCcCCHHHhCCCCCCCE
Confidence 345555555543 333322 4455555555555544334444444444 334555555444433 444455555
Q ss_pred EEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccc
Q 038012 97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|++++|.++ .+|.. .+++|++|++++|++++ ..|..++++++|++|++++|.+.
T Consensus 105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 555555544 34432 34445555555554443 12344444445555555444443
No 93
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=7.4e-16 Score=107.24 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=99.6
Q ss_pred ceeEEEeecCCCcccccc-cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 16 DKAVFSLAQYFLSGPIHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..++.|+ +|++++|++++.++. +..+++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------ELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------EEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC------EEECCCCcCCccCHHHhcCCCC
Confidence 789999999999875554 488999999999999999988888999998888 669999999998887 999999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS 134 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~ 134 (171)
|++|++++|.+++..|.. +..+++|+.|++++|.+.+..+
T Consensus 104 L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999666666 5999999999999999987544
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=6.2e-16 Score=105.20 Aligned_cols=115 Identities=28% Similarity=0.315 Sum_probs=97.3
Q ss_pred cCCCCCcEEEecCCCcC-CccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012 36 ANLQSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE 114 (171)
Q Consensus 36 ~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~ 114 (171)
...+.|++|++++|.++ +.+|..+..+++|+ +|++++|.+++. ..++.+++|++|++++|.+.+.+|.. +.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLE------FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCC------EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCC------EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-Hh
Confidence 34588999999999998 66777777777776 779999999987 55999999999999999998556555 58
Q ss_pred cCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccC
Q 038012 115 QLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 115 ~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
.+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 8999999999999998642 2788999999999999999986655
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=106.40 Aligned_cols=110 Identities=22% Similarity=0.255 Sum_probs=99.1
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
.++++|++++|.++. +|..+..+++|+.|++++|.+++..+..|..++.|+ .|++++|.++++++. +..+++
T Consensus 31 ~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~------~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL------TLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC------EEECCCCccCEeCHHHhCCCCC
Confidence 479999999999984 778899999999999999999987777888888888 669999999998887 999999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
|++|++++|.++ .+|...|..+++|+.+++++|.+...
T Consensus 104 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 104 LRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecC
Confidence 999999999998 67776679999999999999999753
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.3e-15 Score=112.58 Aligned_cols=128 Identities=23% Similarity=0.300 Sum_probs=109.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.+++.|++++|.+.. ++ .+..+++|+.|++++|.+++. ++ +..+++|+ +|++++|.+++. +.+..+++|
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~------~L~l~~n~l~~~-~~l~~l~~L 114 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLG------WLFLDENKVKDL-SSLKDLKKL 114 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC------EEECCSSCCCCG-GGGTTCTTC
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCC------EEECCCCcCCCC-hhhccCCCC
Confidence 478999999999986 33 478899999999999999864 44 77788777 679999999874 348999999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
++|++++|.+. .++ . +..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|
T Consensus 115 ~~L~L~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 115 KSLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CEEECTTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CEEECCCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99999999998 453 4 48999999999999999854 678999999999999999987655
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=129.85 Aligned_cols=139 Identities=22% Similarity=0.209 Sum_probs=108.8
Q ss_pred eeceeEEEeecCCCcccc-cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC-C--Cc
Q 038012 14 RCDKAVFSLAQYFLSGPI-HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-Y--LH 89 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~-~--~~ 89 (171)
..++++|++++|...+.+ |.+|..+++|++|++++|.+++..|..|..+++|+ +|++++|.+++..+ . ++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF------ELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC------CEECTTCCCSSCCSTTCCCS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC------EeeCcCCCCCcccccCcccc
Confidence 357889999999766555 67789999999999999999877788888888887 55889998887433 3 78
Q ss_pred CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCC--CCCcEEEccccccccccC
Q 038012 90 ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL--SMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 90 ~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p 158 (171)
.+++|++|++++|.+.+..+...|+.+++|+.|++++|.+++..+..+..+ ++|+.|+++.|.+.+..|
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 888999999999988754444446888999999999988887777777666 667777777776666554
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.3e-16 Score=105.32 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=98.1
Q ss_pred CCCCCcEEEecCCCcC-CccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhc
Q 038012 37 NLQSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQ 115 (171)
Q Consensus 37 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~ 115 (171)
..++++.|++++|.++ +.+|..+..+++|+ +|++++|.+++. +.++.+++|++|++++|.+.+.+|.. +..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELE------FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEK 86 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCC------EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCc------EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhh
Confidence 3478999999999998 67888878888887 669999999987 55999999999999999998556665 488
Q ss_pred CCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccccC
Q 038012 116 LLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 116 l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+++|+.|++++|.+++. .+..+..+++|++|++++|.+.+..+
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999999999863 34789999999999999999987654
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.9e-16 Score=130.00 Aligned_cols=119 Identities=23% Similarity=0.231 Sum_probs=84.3
Q ss_pred ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCC
Q 038012 31 IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISS 110 (171)
Q Consensus 31 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~ 110 (171)
.+..+..+..|+.|+|++|.+. .+|..+..++.|+ +|+|++|.++.++..++.+++|++|++++|.++ .+|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT------RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS------CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC------EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 3555677778888888888877 5666666677666 447888887754433777788888888888887 7777
Q ss_pred hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
.+ +.+++|+.|++++|.+. .+|..|+.+++|+.|++++|.+.+.+|+
T Consensus 288 ~~-~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 288 EL-GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SG-GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred hh-cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 74 77888888888888776 5677777888888888888887776663
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=1.4e-15 Score=114.50 Aligned_cols=112 Identities=24% Similarity=0.307 Sum_probs=84.4
Q ss_pred ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012 35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE 114 (171)
Q Consensus 35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~ 114 (171)
+..+++|++|++++|.+++. +. +..+++| +.+++++|.++.. +.+..+++|+++++++|.+. .++ . +.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L------~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~-~~~-~-~~ 284 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDL-SP-LANLSQL------TWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQIS-DIS-V-LN 284 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC------CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-CCG-G-GG
T ss_pred hhcCCcCCEEEccCCccCCC-cc-hhcCCCC------CEEECCCCccCCC-hhHhcCCCcCEEEccCCccC-CCh-h-hc
Confidence 44455555555555555432 22 4444444 4779999988874 44888899999999999987 443 3 58
Q ss_pred cCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 115 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 89999999999999988888889999999999999999987766
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.3e-15 Score=122.80 Aligned_cols=125 Identities=27% Similarity=0.321 Sum_probs=64.4
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
..+|+.|++++|.+.+..+ +..+++|+.|++++|.+++ + +.+..+++|+. |++++|.+++. +.+..+++
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~------L~Ls~N~l~~l-~~l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS------LSLEHNGISDI-NGLVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE------EECTTSCCCCC-GGGGGCTT
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE------EEecCCCCCCC-ccccCCCc
Confidence 3467777777777776333 6677777777777777763 2 24555555553 34444444432 22444444
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 133 L~~L~Ls~N~l~-~l-~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 133 LESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSEEECCSSCCC-CC-GG-GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCEEECCCCccC-Cc-hh-hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 444444444444 22 12 2444444444444444443222 444444444444444443
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=7.9e-17 Score=132.32 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=113.6
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
..++.|++++|.+. .+|..+..++.|+.|+|++|.++ .+|..|..+++|+ +|+|++|.++.++..++.+++|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLR------VLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCC------EEECTTSCCSSCCSSGGGGTTC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCC------EEeCcCCcCCccChhhcCCCCC
Confidence 57889999999998 47878889999999999999999 7899998898888 6699999999664459999999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCC-CcEEEccccccccccC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM-LQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p 158 (171)
++|++++|.++ .+|.. |+.+++|+.|++++|.+.+..|..+..+.. ...+++++|.+.+.+|
T Consensus 296 ~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 99999999997 89988 599999999999999999888877655422 2235667777776666
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=3.9e-15 Score=101.72 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=93.2
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN 93 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~ 93 (171)
|..+++++++|.++. +|..+ .+.++.|++++|.+++..|..|..+++|+ +|++++|+++++++. +..+++
T Consensus 9 C~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 9 CSGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLT------RLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp EETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCC------EEECCCCCcCccChhhccCCCC
Confidence 456789999999986 67655 38899999999999987788888888888 669999999988877 789999
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
|++|++++|.++ .++...|..+++|+.|++++|.+...
T Consensus 80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999998 66766569999999999999998754
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=4e-15 Score=108.39 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=83.1
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEee
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFS 77 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~ 77 (171)
..+++.|++++|.+++. ++ +..+++|+.|++++|.+++ +|.. .. ++|+.|+ +|+.|+++
T Consensus 62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136 (263)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECT
T ss_pred CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECC
Confidence 35788888888888763 33 7778888888888887764 3321 11 3333333 56688999
Q ss_pred cccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 78 NNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 78 ~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
+|++++. +.++.+++|+.|++++|.+.+ + .. +..+++|+.|++++|.+.+.
T Consensus 137 ~N~i~~~-~~l~~l~~L~~L~L~~N~i~~-~-~~-l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSI-VMLGFLSKLEVLDLHGNEITN-T-GG-LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC-GGGGGCTTCCEEECTTSCCCB-C-TT-STTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCC-hHHccCCCCCEEECCCCcCcc-h-HH-hccCCCCCEEeCCCCcccCC
Confidence 9999986 358899999999999999984 4 44 58999999999999999854
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=3.8e-15 Score=112.03 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=106.5
Q ss_pred ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCC
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~ 92 (171)
..+++++|++++|.+++. +. +..+++|++|++++|.+++. +.+..+++|+ ++++++|.+++. +.+..++
T Consensus 219 ~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~ 287 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLK------MLNVGSNQISDI-SVLNNLS 287 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCC------EEECCSSCCCCC-GGGGGCT
T ss_pred cCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcC------EEEccCCccCCC-hhhcCCC
Confidence 345799999999999874 43 88999999999999999853 4577777777 679999999886 4488899
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..| +..+++|+.|++++|++.
T Consensus 288 ~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999998555555 5999999999999999996655 889999999999999875
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=6.6e-15 Score=115.10 Aligned_cols=127 Identities=25% Similarity=0.281 Sum_probs=55.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
+++.|++++|.+.+..+ +..+++|+.|++++|.+++. ++ +..++.|+ .|++++|.+++..+ ++.+++|+
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~------~L~L~~n~l~~~~~-~~~l~~L~ 312 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT------NLELNENQLEDISP-ISNLKNLT 312 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS------EEECCSSCCSCCGG-GGGCTTCS
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC------eEEcCCCcccCchh-hcCCCCCC
Confidence 34444444444443221 34444455555555544432 21 33444444 44555554444322 44444555
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
.|++++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+..|
T Consensus 313 ~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 313 YLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp EEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred EEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 55555554442211 24444444444444444432 234444445555555544444443
No 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=5.3e-15 Score=101.02 Aligned_cols=109 Identities=24% Similarity=0.298 Sum_probs=93.7
Q ss_pred CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012 40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN 118 (171)
Q Consensus 40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~ 118 (171)
..+++++++|.++ .+|..+ .+.++ +|++++|.++++.+. +..+++|++|++++|.++ .+|...|..+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~------~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQ------VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCS------EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCc------EEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCC
Confidence 4678999999998 577655 25555 779999999998777 999999999999999998 677776799999
Q ss_pred CcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 119 LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 119 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
|+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999997766779999999999999998875543
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=5.1e-15 Score=118.53 Aligned_cols=110 Identities=24% Similarity=0.210 Sum_probs=85.3
Q ss_pred CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012 40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119 (171)
Q Consensus 40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L 119 (171)
.|+.|++++|.+++ +|. +..+++|+ .|++++|.++.++..++.+++|+.|++++|.++ .+| . ++.+++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVT------HLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCC------EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCc------EeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cCCCCCC
Confidence 47888888888874 555 77777776 668888888855444888888888888888887 466 4 4888888
Q ss_pred cEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccCCC
Q 038012 120 VFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQITKF 160 (171)
Q Consensus 120 ~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~ 160 (171)
+.|++++|.+++.. |..++.+++|+.|++++|++.+.+|..
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 88888888888665 788888888888888888888776643
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=3.7e-15 Score=102.20 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=95.0
Q ss_pred cccCCCCCcEEEecCCCcCCccchhhhcCC-CcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChh
Q 038012 34 SLANLQSLSEIYLDNINLSSTIPEFLADFS-NLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTP 112 (171)
Q Consensus 34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~ 112 (171)
.+....+|++|++++|.++. +|. +..+. .|+ +|++++|.+++. +.++.+++|++|++++|.++ .+|...
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~------~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFD------AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCS------EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCH
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCC------EEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcch
Confidence 45678899999999999984 444 43333 676 779999999987 55999999999999999998 677666
Q ss_pred hhcCCCCcEEEcccCeeecccCh--hhhCCCCCcEEEccccccccccCC
Q 038012 113 WEQLLNLVFVDLSNNSLNGNISL--FLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 113 ~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
|..+++|+.|++++|.+. .+|. .+..+++|+.|++++|++.. +|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~ 130 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKH 130 (176)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence 799999999999999997 4565 78899999999999999974 443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=5.5e-15 Score=119.11 Aligned_cols=128 Identities=22% Similarity=0.294 Sum_probs=110.1
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L 94 (171)
.+++.|++++|.+.. ++ .+..+++|+.|++++|.+++.. + +..++.|+ .|++++|.+++. +.+..+++|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~------~L~Ls~N~l~~l-~~l~~l~~L 111 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LTNLKNLG------WLFLDENKIKDL-SSLKDLKKL 111 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCG-G-GGGCTTCC------EEECCSSCCCCC-TTSTTCTTC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCCh-h-hccCCCCC------EEECcCCCCCCC-hhhccCCCC
Confidence 478899999999986 44 5889999999999999998644 3 77788777 679999999874 468999999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 158 (171)
+.|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|
T Consensus 112 ~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 112 KSLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CEEECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CEEEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99999999998 454 3 59999999999999999864 678999999999999999998766
No 111
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=1.4e-14 Score=99.38 Aligned_cols=109 Identities=22% Similarity=0.385 Sum_probs=93.6
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~ 92 (171)
.|.-+.++++++.+.. +|..+. +.|++|++++|.+++..|..|..+++|+ +|++++|+++++++. +..++
T Consensus 11 ~C~~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 11 SCDQTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQ------QLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp EECSSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred EECCcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCC------EEECCCCCCCccChhHhCCcc
Confidence 3556789999999975 676653 8899999999999987788888888888 669999999998777 78999
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
+|++|++++|.+. .+|...|..+++|+.|++++|.+...
T Consensus 82 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999998 67776569999999999999999854
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=4.4e-16 Score=116.60 Aligned_cols=137 Identities=25% Similarity=0.291 Sum_probs=83.6
Q ss_pred eceeEEEeecCCCccc-ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------cccE
Q 038012 15 CDKAVFSLAQYFLSGP-IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------SAIF 73 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------~l~~ 73 (171)
.++++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|+.|+ +|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4677777777776644 556666777777777777777666666666666666443 3445
Q ss_pred EEeecc-ccccc-CCC-CcCCC-CccEEEccCCc--cc-ccCCChhhhcCCCCcEEEcccCe-eecccChhhhCCCCCcE
Q 038012 74 MDFSNN-IFSGA-IPY-LHILK-NLTHLDLSNNL--LT-GVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFELSMLQR 145 (171)
Q Consensus 74 l~l~~n-~~~~~-~~~-~~~l~-~L~~l~l~~n~--~~-~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~ 145 (171)
|++++| .+++. .+. +..++ +|++|++++|. ++ +.++.. +..+++|+.|++++|. +++..+..+..+++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 566666 55542 222 55555 66666666663 33 233333 3566667777776666 55555556666677777
Q ss_pred EEccccc
Q 038012 146 LQLADNQ 152 (171)
Q Consensus 146 L~l~~n~ 152 (171)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 7776663
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=7.7e-18 Score=117.75 Aligned_cols=133 Identities=24% Similarity=0.280 Sum_probs=104.1
Q ss_pred ceeEEEeecCCCcccccc------cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHP------SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLH 89 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~ 89 (171)
.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+ +|++++|.++.++..+.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~------~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR------ILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC------EEEEEEEEECSCSSHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC------EEECCCCCcccccchhh
Confidence 455556666666655554 88899999999999999985 56 777777777 66999999986543366
Q ss_pred CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccCC
Q 038012 90 ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 90 ~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
.+++|++|++++|.+. .+| . +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-SLS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHCSEEEEEEEECC-CHH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCC-cCC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 7789999999999998 455 4 5888999999999999985332 4688999999999999999777554
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=6.1e-15 Score=118.00 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=78.3
Q ss_pred CCCCCCCC-----Ccccc-ee---ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccc
Q 038012 1 WNQRRDFS-----DWNNV-RC---DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISA 71 (171)
Q Consensus 1 w~~~~~~~-----~~~~~-~~---~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l 71 (171)
|..+...| .|.++ .| +++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~----- 103 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLE----- 103 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCC-----
T ss_pred HhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCC-----
Confidence 44455566 57777 33 78899999999887 66655 377888999988887 566 2345555
Q ss_pred cEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012 72 IFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 72 ~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
+|++++|.+++++. +.. +|++|++++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|
T Consensus 104 -~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 104 -YLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp -EEECCSSCCSCCCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred -EEEccCCCCCCcch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 45666666665433 332 5666666666655 2444 34455555555555553 333 3445555555555
Q ss_pred cccc
Q 038012 152 QFDG 155 (171)
Q Consensus 152 ~l~~ 155 (171)
.+.+
T Consensus 171 ~L~~ 174 (571)
T 3cvr_A 171 QLTF 174 (571)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 5543
No 115
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.1e-14 Score=99.84 Aligned_cols=107 Identities=24% Similarity=0.310 Sum_probs=92.2
Q ss_pred CcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012 41 LSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119 (171)
Q Consensus 41 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L 119 (171)
-+.+++++|.++ .+|..+. +.++ .|++++|.+++.++. ++.+++|++|++++|.++ .+|...|..+++|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQ------RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCS------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCc------EEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchh
Confidence 478999999997 6777653 5565 779999999998777 999999999999999998 6787767899999
Q ss_pred cEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012 120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157 (171)
Q Consensus 120 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 157 (171)
+.|++++|++++..+..+..+++|++|++++|++....
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999999999666666999999999999999987543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4.4e-15 Score=118.88 Aligned_cols=122 Identities=24% Similarity=0.229 Sum_probs=105.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~ 95 (171)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+ .|++++|.+++++ .++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~------~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE------VLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC------EEECCSSCCCCCG-GGTTCSSCC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC------EEECCCCCCCCCc-ccCCCCCCc
Confidence 47889999999997 665 899999999999999999 7899999999888 6699999999854 799999999
Q ss_pred EEEccCCcccccC-CChhhhcCCCCcEEEcccCeeecccCh---hhhCCCCCcEEEc
Q 038012 96 HLDLSNNLLTGVI-SSTPWEQLLNLVFVDLSNNSLNGNISL---FLFELSMLQRLQL 148 (171)
Q Consensus 96 ~l~l~~n~~~~~l-~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l 148 (171)
.|++++|.+++.. |..+ +.+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999998544 7774 9999999999999999865442 2445889998864
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.1e-14 Score=116.49 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=53.8
Q ss_pred ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCC-------cEEEcccCeeecccChhhhCCCCC
Q 038012 71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNL-------VFVDLSNNSLNGNISLFLFELSML 143 (171)
Q Consensus 71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L 143 (171)
|+.|++++|.+++++. +. ++|++|++++|.++ .+|. + .. +| +.|++++|.++ .+|..+..+++|
T Consensus 162 L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 162 LEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp CCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred cCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 4466666666666443 43 67777777777776 6666 3 32 55 78888888887 567777778888
Q ss_pred cEEEccccccccccC
Q 038012 144 QRLQLADNQFDGQIT 158 (171)
Q Consensus 144 ~~L~l~~n~l~~~~p 158 (171)
+.|++++|++.+.+|
T Consensus 233 ~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 233 CTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSSCCHHHH
T ss_pred CEEEeeCCcCCCcCH
Confidence 888888888877666
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=2.2e-14 Score=112.21 Aligned_cols=132 Identities=27% Similarity=0.314 Sum_probs=81.5
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN 78 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~ 78 (171)
.++++|++++|.+.+..+ +..+++|+.|++++|.+++. +.+..+++|+.|+ +|+.|++++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence 456666666666665333 44556666666666665532 2344445444332 234667777
Q ss_pred ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012 79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
|.+++..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+.
T Consensus 275 n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 275 NQISNISP-LAGLTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CccCcccc-ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 77766443 6667777777777777763 333 3677777777777777775444 56777788888887777654
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=3.1e-16 Score=119.87 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=22.8
Q ss_pred eceeEEEeecCCCcc----cccccccCCCCCcEEEecCCCcC
Q 038012 15 CDKAVFSLAQYFLSG----PIHPSLANLQSLSEIYLDNINLS 52 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~ 52 (171)
+++++|++++|.+.+ .++..+..+++|+.|++++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 456666666666654 24555556666666666666654
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.3e-14 Score=108.32 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=90.3
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceec-------------------cccEE
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFI-------------------SAIFM 74 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~-------------------~l~~l 74 (171)
.++++|++++|.++...+.+|.++++|++|++++|.+.+.+|. .|.+++++..+. +|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 3688999999999975556789999999999999998665553 566676655322 45666
Q ss_pred EeecccccccCCC-C-------------------------cCC-CCccEEEccCCcccccCCChhhhcCCCCcEEEccc-
Q 038012 75 DFSNNIFSGAIPY-L-------------------------HIL-KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN- 126 (171)
Q Consensus 75 ~l~~n~~~~~~~~-~-------------------------~~l-~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~- 126 (171)
++++|.+...++. + ..+ ..++.|++++|.++ .++... ....+++.+++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~-f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA-FNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS-STTEEEEEEECTTC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh-ccccchhHHhhccC
Confidence 6666655443221 1 111 23445555555555 455443 2334556666653
Q ss_pred CeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012 127 NSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159 (171)
Q Consensus 127 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 159 (171)
|.++...+.+|..+++|+.|++++|++. .+|.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 4454333346778888888888888887 4443
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=7.2e-14 Score=109.21 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=19.3
Q ss_pred hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012 114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
+.+++|+.|++++|++++ +| +..+++|+.|++++|.+.+
T Consensus 209 ~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 444445555555555543 23 4455555555555555544
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=9.1e-14 Score=108.64 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=61.1
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
..++++|++++|.+++ +| .+..+++|++|++++|.+++. | ++.+++|+ +|++++|.+++.. ++.+++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~------~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLT------YLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCS------EEECCSSCCSCCC--CTTCTT
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCC------EEECcCCCCceee--cCCCCc
Confidence 3567888888888876 34 577788888888888888753 3 55666666 4455555555431 455555
Q ss_pred ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
|++|++++|.+. .++ ++.+++|+.|++++|.++
T Consensus 108 L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 108 LTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp CCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcCC-eec---CCCCCcCCEEECCCCccc
Confidence 555555555554 232 245555555555555554
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=6e-15 Score=110.45 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=86.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCc-cchhhhcCCCcceec------------------cccEEE
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST-IPEFLADFSNLTSFI------------------SAIFMD 75 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~------------------~l~~l~ 75 (171)
.+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+.|+ +|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4677888888888875444 56789999999999998865 777788888888664 455555
Q ss_pred eecc-ccccc-CCC-CcCCCCccEEEccCC-ccccc-CCChhhhcCC-CCcEEEcccC--eee-cccChhhhCCCCCcEE
Q 038012 76 FSNN-IFSGA-IPY-LHILKNLTHLDLSNN-LLTGV-ISSTPWEQLL-NLVFVDLSNN--SLN-GNISLFLFELSMLQRL 146 (171)
Q Consensus 76 l~~n-~~~~~-~~~-~~~l~~L~~l~l~~n-~~~~~-l~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L 146 (171)
+++| .+++. .+. +..+++|++|++++| .+++. ++.. +..++ +|+.|++++| .++ +.++..+..+++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 5555 34431 222 445555666666655 55432 2333 35566 6666666666 333 2344555566667777
Q ss_pred Eccccc
Q 038012 147 QLADNQ 152 (171)
Q Consensus 147 ~l~~n~ 152 (171)
++++|.
T Consensus 228 ~l~~~~ 233 (336)
T 2ast_B 228 DLSDSV 233 (336)
T ss_dssp ECTTCT
T ss_pred eCCCCC
Confidence 776666
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1.3e-14 Score=110.10 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=29.3
Q ss_pred eceeEEEeecCCCccccc----ccccCCC-CCcEEEecCCCcCCccchhhhc
Q 038012 15 CDKAVFSLAQYFLSGPIH----PSLANLQ-SLSEIYLDNINLSSTIPEFLAD 61 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~ 61 (171)
.++++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 346777777777665444 4555666 6777777777776555555544
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.1e-14 Score=111.27 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=65.0
Q ss_pred ceeEEEeecCCCc-cccc---ccccCCCCCcEEEecCCCcCC-----ccchhhhcCCCcceeccccEEEeeccccc----
Q 038012 16 DKAVFSLAQYFLS-GPIH---PSLANLQSLSEIYLDNINLSS-----TIPEFLADFSNLTSFISAIFMDFSNNIFS---- 82 (171)
Q Consensus 16 ~l~~L~l~~n~~~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~~l~~l~l~~n~~~---- 82 (171)
++++|++++|.+. +.++ ..+..+++|+.|++++|.++. ..+..+..+++|+ .|++++|.++
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~------~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK------VLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC------EEECCSSCCHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc------EEECcCCCCCcHHH
Confidence 4445555555544 1122 233344455555555555441 1111333444444 4466666653
Q ss_pred ccCCC-CcCCCCccEEEccCCccccc----CCChhhhc--CCCCcEEEcccCeeec----ccChhh-hCCCCCcEEEccc
Q 038012 83 GAIPY-LHILKNLTHLDLSNNLLTGV----ISSTPWEQ--LLNLVFVDLSNNSLNG----NISLFL-FELSMLQRLQLAD 150 (171)
Q Consensus 83 ~~~~~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~ 150 (171)
...+. +..+++|++|++++|.+++. ++..+ .. +++|+.|++++|.+.+ .+|..+ .++++|+.|++++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH-hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 22222 55555666666666665532 22221 22 5566666666666654 244444 4456666666666
Q ss_pred ccccccc
Q 038012 151 NQFDGQI 157 (171)
Q Consensus 151 n~l~~~~ 157 (171)
|++.+..
T Consensus 313 N~l~~~~ 319 (386)
T 2ca6_A 313 NRFSEED 319 (386)
T ss_dssp SBSCTTS
T ss_pred CcCCcch
Confidence 6655443
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=3.3e-13 Score=109.08 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=60.2
Q ss_pred cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012 70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 149 (171)
+|+.|++++|.+++++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 4556677777666643 34467778888888776 5665 4567888888888888 678888889999999999
Q ss_pred ccccccccC
Q 038012 150 DNQFDGQIT 158 (171)
Q Consensus 150 ~n~l~~~~p 158 (171)
+|++.+.+|
T Consensus 293 ~N~l~~~~~ 301 (622)
T 3g06_A 293 GNPLSERTL 301 (622)
T ss_dssp SCCCCHHHH
T ss_pred CCCCCCcCH
Confidence 998887665
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=8.4e-13 Score=103.10 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=44.6
Q ss_pred ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012 71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150 (171)
Q Consensus 71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (171)
|++|++++|.+++. +.++.+++|+++++++|.+. .+|.. ..+|+.|++++|.+. .+| .++.+++|+.|++++
T Consensus 175 L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 175 LEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp CCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred ccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence 44666777766663 34666666666666666665 34332 135556666666555 344 255666666666666
Q ss_pred ccccc
Q 038012 151 NQFDG 155 (171)
Q Consensus 151 n~l~~ 155 (171)
|.+.+
T Consensus 247 N~l~~ 251 (454)
T 1jl5_A 247 NLLKT 251 (454)
T ss_dssp SCCSS
T ss_pred CcCCc
Confidence 66553
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=4.9e-13 Score=100.96 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=66.9
Q ss_pred cccEEEeecccccccCCCCcCCCCccEEEccC-CcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012 70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSN-NLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~-n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 148 (171)
.++.|++++|+++.+++......+++.+++++ |.++ .+|...|..+++|+.|++++|+++. +|. ..+.+|+.|.+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~ 230 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRA 230 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEEC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhh
Confidence 46788999999998777755667899999975 5665 8998878999999999999999995 443 23556666666
Q ss_pred cccccccccCCCCCC
Q 038012 149 ADNQFDGQITKFSNA 163 (171)
Q Consensus 149 ~~n~l~~~~p~~~~~ 163 (171)
.++.-...+|.+...
T Consensus 231 l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 231 RSTYNLKKLPTLEKL 245 (350)
T ss_dssp TTCTTCCCCCCTTTC
T ss_pred ccCCCcCcCCCchhC
Confidence 555444566654433
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.2e-14 Score=108.82 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=28.8
Q ss_pred ceeEEEeecCCCcccccccccCC-----CCCcEEEecCCCcCCccchhh
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANL-----QSLSEIYLDNINLSSTIPEFL 59 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~ 59 (171)
++++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 67777777777776555555543 777777777777765554433
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=1.3e-14 Score=113.32 Aligned_cols=137 Identities=18% Similarity=0.102 Sum_probs=61.7
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCc-------------ceec-------------
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNL-------------TSFI------------- 69 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~------------- 69 (171)
+++++++++|.+ +.+|+.++.+++|++|++++|.+++..|.+++.+..+ +.++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 466667777766 4566666666666666666666666666655554433 1111
Q ss_pred -cccEEEeecccccccCCCC----------------cCC-CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec
Q 038012 70 -SAIFMDFSNNIFSGAIPYL----------------HIL-KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG 131 (171)
Q Consensus 70 -~l~~l~l~~n~~~~~~~~~----------------~~l-~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~ 131 (171)
+|+.+++++|.+++++..+ ... ++|++|++++|.+. .+|. ++.+++|+.|++++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc
Confidence 3445555555555422111 011 35666666666665 3552 3666666666666666663
Q ss_pred ccChhhhCCCCCcEEEccccccccccCCCC
Q 038012 132 NISLFLFELSMLQRLQLADNQFDGQITKFS 161 (171)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 161 (171)
+|.. .++|++|++++|.+.+ +|++.
T Consensus 168 -lp~~---~~~L~~L~L~~n~l~~-l~~~~ 192 (454)
T 1jl5_A 168 -LPDL---PPSLEFIAAGNNQLEE-LPELQ 192 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSS-CCCCT
T ss_pred -cCCC---cccccEEECcCCcCCc-Ccccc
Confidence 3432 2466666666666664 44443
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.4e-15 Score=106.20 Aligned_cols=128 Identities=22% Similarity=0.155 Sum_probs=105.6
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~ 93 (171)
..++++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+ .|++++|.+++.+ .+..+++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~------~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE------ELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS------EEEEEEEECCCHH-HHHHHHH
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC------EEECcCCcCCcCC-ccccCCC
Confidence 3579999999999987 66 8889999999999999998 5777766666666 7799999998853 5788899
Q ss_pred ccEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccCh----------hhhCCCCCcEEEccccccc
Q 038012 94 LTHLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNISL----------FLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 94 L~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~~~~l~~L~~L~l~~n~l~ 154 (171)
|++|++++|.+. .++. ..+..+++|+.+++++|.+.+..|. .+..+++|+.|+ ++.+.
T Consensus 117 L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999999998 4443 2358999999999999999866554 378999999987 66654
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=5e-13 Score=100.59 Aligned_cols=104 Identities=24% Similarity=0.275 Sum_probs=89.1
Q ss_pred EEEeecC-CCcccccccccCCCCCcEEEecC-CCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCcc
Q 038012 19 VFSLAQY-FLSGPIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLT 95 (171)
Q Consensus 19 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~ 95 (171)
.++++++ .++. +|. +..+.+|+.|+|++ |.+++..+..|..+++|+ .|+|++|+++++++. +..+++|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR------NLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS------EEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC------EEECCCCccceeCHHHhcCCcCCC
Confidence 4577887 7886 777 99999999999996 999977667888888888 669999999999887 89999999
Q ss_pred EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012 96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132 (171)
Q Consensus 96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~ 132 (171)
+|++++|.+. .+|...|..+. |+.|++.+|.+...
T Consensus 84 ~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999999998 67877656555 99999999998743
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=7.4e-13 Score=107.02 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=53.5
Q ss_pred CCCCCCCCCccccee-----------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec
Q 038012 1 WNQRRDFSDWNNVRC-----------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI 69 (171)
Q Consensus 1 w~~~~~~~~~~~~~~-----------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 69 (171)
|..+.++|.|.+..+ +++.|++++|.++. +|..+. ++|+.|++++|.++ .+|. .+++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~--- 84 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR--- 84 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC---
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC---
Confidence 444567777755321 47788888888874 666554 67888888888887 4554 345555
Q ss_pred cccEEEeecccccccCCCCcCCCCccEEEccCCccc
Q 038012 70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLT 105 (171)
Q Consensus 70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~ 105 (171)
+|++++|.++.++. .+++|++|++++|.+.
T Consensus 85 ---~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 85 ---TLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp ---EEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred ---EEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 44555555554332 3344555555555444
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=1.2e-12 Score=98.00 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=113.9
Q ss_pred eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcce--------------------------
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTS-------------------------- 67 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------------- 67 (171)
..+++.++++. .++.....+|.++.+|+.++++.|.++...+..|..+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 35788889888 777655677888999999999988764332333333222211
Q ss_pred ----------------------------------------------eccccEEEeecccccccCCC-CcCCCCccEEEcc
Q 038012 68 ----------------------------------------------FISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLS 100 (171)
Q Consensus 68 ----------------------------------------------L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~ 100 (171)
..+|+.+++++|+++.++.. +..+++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 22577889999999888777 9999999999999
Q ss_pred CCcccccCCChhhhcCCCCc-EEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccC
Q 038012 101 NNLLTGVISSTPWEQLLNLV-FVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDT 170 (171)
Q Consensus 101 ~n~~~~~l~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 170 (171)
+| +. .++...|.+|.+|+ .++++. .++...+.+|.++++|+.+++..|.+. .++.-.+....+|+.
T Consensus 259 ~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 259 HN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKL 325 (329)
T ss_dssp TT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCE
T ss_pred cc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhh
Confidence 98 76 78888799999999 999988 666566789999999999999999887 555544555545654
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=4.9e-14 Score=109.61 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=86.9
Q ss_pred eceeEEEeecCCCccccc----cc-ccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceec----------------
Q 038012 15 CDKAVFSLAQYFLSGPIH----PS-LANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFI---------------- 69 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~----~~-~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~---------------- 69 (171)
+++++|++++|.+.+... +. +..+++|++|++++|.++.. ++..+..+++|+.|+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 467777777776654211 11 22466777777777766643 455555566666443
Q ss_pred -------cccEEEeecccccccC----CC-CcCCCCccEEEccCCcccccCCChhhhc----CCCCcEEEcccCeeec--
Q 038012 70 -------SAIFMDFSNNIFSGAI----PY-LHILKNLTHLDLSNNLLTGVISSTPWEQ----LLNLVFVDLSNNSLNG-- 131 (171)
Q Consensus 70 -------~l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~----l~~L~~L~l~~n~~~~-- 131 (171)
+|+.|++++|.+++.. +. +..+++|+.|++++|.+.+..+..+... .++|+.|++++|.+++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 3446666666665431 22 4556777777787777764333332111 5577888888887775
Q ss_pred --ccChhhhCCCCCcEEEccccccccc
Q 038012 132 --NISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 132 --~~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
.++..+..+++|++|++++|++.+.
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5566677778888888888877643
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=2.2e-12 Score=97.04 Aligned_cols=103 Identities=23% Similarity=0.176 Sum_probs=86.1
Q ss_pred cEEEecCC-CcCCccchhhhcCCCcceeccccEEEeec-ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012 42 SEIYLDNI-NLSSTIPEFLADFSNLTSFISAIFMDFSN-NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN 118 (171)
Q Consensus 42 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~~l~~l~l~~-n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~ 118 (171)
..++.+++ .++ .+|. +..+++|+ .|+|++ |.++++++. ++.+++|+.|++++|.+.+ ++...|..+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~------~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLT------ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPR 81 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCS------EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCee------EEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcC
Confidence 34588887 888 5777 87777777 669996 999998877 9999999999999999995 55544799999
Q ss_pred CcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 119 LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 119 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
|+.|++++|++++..+..+..++ |+.|++.+|++.
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999999966555666666 999999999876
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=5.5e-13 Score=103.67 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=38.5
Q ss_pred ccEEEeecccccccC----CC-CcCCCCccEEEccCCcccccCCChhhh----cCCCCcEEEcccCeeecc----cChhh
Q 038012 71 AIFMDFSNNIFSGAI----PY-LHILKNLTHLDLSNNLLTGVISSTPWE----QLLNLVFVDLSNNSLNGN----ISLFL 137 (171)
Q Consensus 71 l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~ 137 (171)
|+.|++++|.+++.. +. +..+++|++|++++|.+.+..+..+.. ..++|+.|++++|.+++. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 445555555555422 11 344455566666655554221221111 133555555555555432 23344
Q ss_pred hCCCCCcEEEccccccc
Q 038012 138 FELSMLQRLQLADNQFD 154 (171)
Q Consensus 138 ~~l~~L~~L~l~~n~l~ 154 (171)
..+++|++|++++|.+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 224 ASKASLRELALGSNKLG 240 (461)
T ss_dssp HHCTTCCEEECCSSBCH
T ss_pred HhCCCccEEeccCCcCC
Confidence 44555555555555443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=2.5e-11 Score=90.82 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=95.9
Q ss_pred eeceeEEEeecCCCc--------------------ccccccccC--------CCCCcEEEecCCCcCCccchhhhcCCCc
Q 038012 14 RCDKAVFSLAQYFLS--------------------GPIHPSLAN--------LQSLSEIYLDNINLSSTIPEFLADFSNL 65 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~--------------------~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L 65 (171)
..+++.|++++|.+. .....+|.+ +.+|+.++++. .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 456899999999877 222344667 89999999999 7875556788889988
Q ss_pred ceeccccEEEeecccccccCCC-CcC------------------------------------------------------
Q 038012 66 TSFISAIFMDFSNNIFSGAIPY-LHI------------------------------------------------------ 90 (171)
Q Consensus 66 ~~L~~l~~l~l~~n~~~~~~~~-~~~------------------------------------------------------ 90 (171)
+ .+++++|.+..+.+. +..
T Consensus 127 ~------~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 127 K------ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp C------EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred c------eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 8 557777764332222 222
Q ss_pred ------------------------CCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCc-E
Q 038012 91 ------------------------LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ-R 145 (171)
Q Consensus 91 ------------------------l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~ 145 (171)
+++|+.+++++|.++ .+|...|..|.+|+.++++.| ++...+.+|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 566777777777776 677766777777777777776 5545566777777777 7
Q ss_pred EEccccccccccCCCCCCCccccc
Q 038012 146 LQLADNQFDGQITKFSNASTSAID 169 (171)
Q Consensus 146 L~l~~n~l~~~~p~~~~~~~~~L~ 169 (171)
+++.. .+. .++.-++....+|+
T Consensus 279 l~l~~-~l~-~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 279 LELPA-SVT-AIEFGAFMGCDNLR 300 (329)
T ss_dssp EEECT-TCC-EECTTTTTTCTTEE
T ss_pred EEEcc-cce-EEchhhhhCCccCC
Confidence 77766 333 44443333333343
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.2e-12 Score=97.44 Aligned_cols=133 Identities=19% Similarity=0.115 Sum_probs=75.3
Q ss_pred ceeEEEeecCCCcccccccc-cCCCCCcEEEecCCCcCCccchhhh-----cCCCcceeccccEEEeecccccccCC---
Q 038012 16 DKAVFSLAQYFLSGPIHPSL-ANLQSLSEIYLDNINLSSTIPEFLA-----DFSNLTSFISAIFMDFSNNIFSGAIP--- 86 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~~l~~l~l~~n~~~~~~~--- 86 (171)
++++|++++|.+.+.....+ ..+.+|+.|++++|.+++.....+. ..+.| +.|++++|.++....
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L------~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI------TTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCC------CEEECCSSCCHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCcc------ceeeCCCCCCChHHHHHH
Confidence 45555555555543222221 1234555556655555432222221 12333 366888887764221
Q ss_pred -C-CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccccc
Q 038012 87 -Y-LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 87 -~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~ 155 (171)
. +..+++|++|++++|.+.+. ++.. +...++|+.|++++|.+++. ++..+...++|++|++++|.+..
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1 45677788888888877632 2233 25667788888888887653 23344556788888888887753
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=3.4e-12 Score=97.31 Aligned_cols=136 Identities=22% Similarity=0.137 Sum_probs=99.4
Q ss_pred ceeceeEEEeecCCCcccccccccC-----CCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCC
Q 038012 13 VRCDKAVFSLAQYFLSGPIHPSLAN-----LQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIP 86 (171)
Q Consensus 13 ~~~~l~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~ 86 (171)
+...++.|++++|.++......+.. .+.|++|++++|.++......+. .+.+++ .|++++|.++....
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~------~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR------KLGLQLNSLGPEAC 143 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE------EEECCSSCCCHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc------HhhcCCCCCCHHHH
Confidence 3357899999999998543333332 26899999999998754333332 234454 77999999975433
Q ss_pred C-C-----cCCCCccEEEccCCcccc----cCCChhhhcCCCCcEEEcccCeeeccc----ChhhhCCCCCcEEEccccc
Q 038012 87 Y-L-----HILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDLSNNSLNGNI----SLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 87 ~-~-----~~l~~L~~l~l~~n~~~~----~l~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~ 152 (171)
. + ...+.|+.|++++|.+++ .++..+ ..+++|++|++++|.+.+.. +..+...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 3 2 356889999999999973 233332 67889999999999987543 5566778899999999999
Q ss_pred ccc
Q 038012 153 FDG 155 (171)
Q Consensus 153 l~~ 155 (171)
+..
T Consensus 223 i~~ 225 (372)
T 3un9_A 223 AGD 225 (372)
T ss_dssp CCH
T ss_pred CCH
Confidence 874
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.05 E-value=7.5e-11 Score=94.31 Aligned_cols=136 Identities=11% Similarity=0.010 Sum_probs=91.3
Q ss_pred eceeEEEeecCCCcccccccccC-CCCCcEEEec----CCCcCCc-----cchhhhcCCCcceeccccEEEeecc--ccc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLAN-LQSLSEIYLD----NINLSST-----IPEFLADFSNLTSFISAIFMDFSNN--IFS 82 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~~l~~l~l~~n--~~~ 82 (171)
+++++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+ .|+++.+ .++
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~------~L~L~~~~~~l~ 451 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR------RFAFYLRQGGLT 451 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC------EEEEECCGGGCC
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC------EEEEecCCCCcc
Confidence 46777777777777655555544 7778888875 5566642 223344566666 5577643 344
Q ss_pred ccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccc
Q 038012 83 GAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQ 156 (171)
Q Consensus 83 ~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 156 (171)
+.... ...+++|++|++++|.+++......+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.++..
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 43322 334788999999999887532233347889999999999988754 344456889999999999987654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.93 E-value=1.3e-10 Score=92.83 Aligned_cols=37 Identities=5% Similarity=0.195 Sum_probs=17.7
Q ss_pred eeEEEeecCC-Ccc-cccccccCCCCCcEEEecCCCcCC
Q 038012 17 KAVFSLAQYF-LSG-PIHPSLANLQSLSEIYLDNINLSS 53 (171)
Q Consensus 17 l~~L~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~n~l~~ 53 (171)
+++|++++|. +.. .++.....+++|++|++++|.+++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence 6666666554 111 112222345566666666665543
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=3.4e-10 Score=90.47 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=73.4
Q ss_pred ceeEEEeecCCCccccccccc-CCCCCcEEEecCC-CcCCc-cchhhhcCCCcceeccccEEEeecccccccCCC-----
Q 038012 16 DKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNI-NLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY----- 87 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~----- 87 (171)
++++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|+ .|++++|.+++..+.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~------~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK------ELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC------EEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC------EEeCcCCccCCcchHHHHHH
Confidence 566666666665544444443 4566666666666 33321 222223455555 567887776653322
Q ss_pred CcCCCCccEEEccCCc--ccccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEcccc
Q 038012 88 LHILKNLTHLDLSNNL--LTGVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 88 ~~~l~~L~~l~l~~n~--~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
...+++|+.|++++|. +.+.....+...+++|+.|++++| .+. .++..+..+++|++|+++.+
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccc
Confidence 3356678888887775 221111122355678888888877 333 35666777777777775433
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.80 E-value=7.5e-10 Score=88.49 Aligned_cols=133 Identities=9% Similarity=0.047 Sum_probs=76.2
Q ss_pred eceeEEEeecCCCccccccccc-CCCCCcEEEec--C----CCcCCc-----cchhhhcCCCcceeccccEEEeeccccc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLD--N----INLSST-----IPEFLADFSNLTSFISAIFMDFSNNIFS 82 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~~l~~l~l~~n~~~ 82 (171)
++++.|.++.+.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|+ .|++++ .++
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~------~L~L~~-~l~ 444 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR------RLSLSG-LLT 444 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC------EEECCS-SCC
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc------EEeecC-ccc
Confidence 3566666666666654444443 36677777776 3 344421 111133445555 556655 444
Q ss_pred ccCCC-CcC-CCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccCh-hhhCCCCCcEEEccccccc
Q 038012 83 GAIPY-LHI-LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL-FLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 83 ~~~~~-~~~-l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 154 (171)
+.... +.. +++|+.|++++|.+++.....+...+++|+.|++++|.+++.... .+..+++|+.|++++|++.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 32222 333 677788888877776443444336677888888888777543333 3345777888888777663
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=9.9e-08 Score=73.34 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=69.2
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc----------------------chhhhcCCCcceec---
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI----------------------PEFLADFSNLTSFI--- 69 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~--- 69 (171)
|+++.+.+.. .+...-..+|.++.+|+.++++.|.++... ..+|.+++.|+.+.
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 3455555554 344333455666677777777666554222 22333343333322
Q ss_pred -------------cccEEEeecccccccCCC-CcCCCCccEEEccCCccc----ccCCChhhhcCCCCcEEEcccCeeec
Q 038012 70 -------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLT----GVISSTPWEQLLNLVFVDLSNNSLNG 131 (171)
Q Consensus 70 -------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~----~~l~~~~~~~l~~L~~L~l~~n~~~~ 131 (171)
+|+.+.+ .+.++.+... +..+++|+.+.+.++.+. ..++...|..|.+|+.+.+.. .++.
T Consensus 236 ~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 236 NVSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp TCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred CccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 2333444 2223333333 566666666666555442 124444566666666666663 3444
Q ss_pred ccChhhhCCCCCcEEEcccc
Q 038012 132 NISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n 151 (171)
....+|.++.+|+.+.+..+
T Consensus 314 I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT
T ss_pred EhhhhhcCCCCccEEEECcc
Confidence 44556666677777776544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=8.4e-08 Score=73.74 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=90.0
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEeec
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFSN 78 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~~ 78 (171)
+++.+.+..+ +......+|.++.+|+.+++..+ ++..-..+|.+ .+|+.+. +|+.+++.+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence 3444444422 43333455667777888887764 33222233333 3333332 456778888
Q ss_pred cccc-----ccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012 79 NIFS-----GAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152 (171)
Q Consensus 79 n~~~-----~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 152 (171)
+.+. .+... +..|++|+.+.+.+ .+. .++...|..|.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 8765 34444 99999999999995 476 788877999999999999765 655667789999 99999999987
Q ss_pred ccc
Q 038012 153 FDG 155 (171)
Q Consensus 153 l~~ 155 (171)
+..
T Consensus 357 ~~~ 359 (401)
T 4fdw_A 357 PPQ 359 (401)
T ss_dssp CCB
T ss_pred Ccc
Confidence 653
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1.2e-08 Score=77.42 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=85.4
Q ss_pred eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh--cCCCcceeccccEEEeec--cccc------cc
Q 038012 15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--DFSNLTSFISAIFMDFSN--NIFS------GA 84 (171)
Q Consensus 15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~~l~~l~l~~--n~~~------~~ 84 (171)
++|+.|.+++|.-. .++. + .+++|+.|++..+.++......+. .+++|+ .|+|+. +... .+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~------~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLE------KLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCC------EEEEECBCGGGTCCSCGGGT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCc------EEEEeccccccccchhHHHH
Confidence 47888888877311 1333 3 377888888888877643333443 567776 556642 2211 11
Q ss_pred CCCC--cCCCCccEEEccCCcccccCCChhhh--cCCCCcEEEcccCeeecccC----hhhhCCCCCcEEEcccccccc
Q 038012 85 IPYL--HILKNLTHLDLSNNLLTGVISSTPWE--QLLNLVFVDLSNNSLNGNIS----LFLFELSMLQRLQLADNQFDG 155 (171)
Q Consensus 85 ~~~~--~~l~~L~~l~l~~n~~~~~l~~~~~~--~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~ 155 (171)
.+.+ ..+++|++|++.+|.+.+..+..++. .+++|+.|+++.|.+.+..+ ..+..+++|+.|+++.|.+..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1112 34789999999999987544444322 46789999999999886433 334567899999999998764
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=3.1e-09 Score=73.27 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=78.4
Q ss_pred ccccccCCCCCcEEEecCC-CcCCc----cchhhhcCCCcceeccccEEEeecccccccC----CC-CcCCCCccEEEcc
Q 038012 31 IHPSLANLQSLSEIYLDNI-NLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI----PY-LHILKNLTHLDLS 100 (171)
Q Consensus 31 ~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~ 100 (171)
+...+...+.|++|++++| .+... +...+...+.|+ .|++++|.+.... .. +...++|++|+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~------~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVK------KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCC------EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcC------EEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 3445666788888888888 77632 223333445555 6688888886422 12 5556788889999
Q ss_pred CCccccc----CCChhhhcCCCCcEEEc--ccCeeeccc----ChhhhCCCCCcEEEccccccc
Q 038012 101 NNLLTGV----ISSTPWEQLLNLVFVDL--SNNSLNGNI----SLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 101 ~n~~~~~----l~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~ 154 (171)
+|.+.+. +...+ ...+.|+.|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 102 ~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 102 SNFISGSGILALVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCCHHHHHHHHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCCHHHHHHHHHHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 8888743 23332 56678999999 778887543 344555688999999988774
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=3.1e-08 Score=72.02 Aligned_cols=72 Identities=25% Similarity=0.210 Sum_probs=41.1
Q ss_pred EEEeecccccccC--CC-CcCCCCccEEEccCCcccccCCChhhhcCC--CCcEEEcccCeeecccC-------hhhhCC
Q 038012 73 FMDFSNNIFSGAI--PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLL--NLVFVDLSNNSLNGNIS-------LFLFEL 140 (171)
Q Consensus 73 ~l~l~~n~~~~~~--~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~~~~~l 140 (171)
.|+|++|+++++. +. +..+++|+.|++++|.+.+. ..+ ..+. +|+.|++++|.+.+..| ..+..+
T Consensus 174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~ 250 (267)
T 3rw6_A 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF 250 (267)
T ss_dssp EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence 4466666666532 23 45566666666666666532 121 3333 66777777776665433 235677
Q ss_pred CCCcEEE
Q 038012 141 SMLQRLQ 147 (171)
Q Consensus 141 ~~L~~L~ 147 (171)
++|+.||
T Consensus 251 P~L~~LD 257 (267)
T 3rw6_A 251 PKLLRLD 257 (267)
T ss_dssp TTCCEES
T ss_pred cccCeEC
Confidence 7777766
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.6e-08 Score=68.60 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=82.3
Q ss_pred eceeEEEeecC-CCccc----ccccccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceeccccEEEeecccccccC
Q 038012 15 CDKAVFSLAQY-FLSGP----IHPSLANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85 (171)
Q Consensus 15 ~~l~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~ 85 (171)
+.+++|++++| .+... +...+...++|++|++++|.+.+. +...+...+.|+ +|++++|.+....
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~------~L~L~~N~i~~~g 109 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK------SLNVESNFISGSG 109 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC------EEECCSSCCCHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC------EEECcCCcCCHHH
Confidence 57999999999 88642 455667789999999999999743 233344445555 7799999998532
Q ss_pred ----CC-CcCCCCccEEEc--cCCccccc----CCChhhhcCCCCcEEEcccCeeec
Q 038012 86 ----PY-LHILKNLTHLDL--SNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNG 131 (171)
Q Consensus 86 ----~~-~~~l~~L~~l~l--~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~ 131 (171)
.. +...++|++|++ ++|.+.+. +... +...+.|+.|++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence 22 777889999999 88999743 3333 3667899999999998863
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=8.7e-07 Score=64.39 Aligned_cols=67 Identities=30% Similarity=0.307 Sum_probs=54.9
Q ss_pred cCCCCccEEEccCCcccc--cCCChhhhcCCCCcEEEcccCeeecccChhhhCCC--CCcEEEccccccccccC
Q 038012 89 HILKNLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS--MLQRLQLADNQFDGQIT 158 (171)
Q Consensus 89 ~~l~~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p 158 (171)
..++.|+.|++++|.+.+ .++.. +..+++|+.|++++|.+.+. ..+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457899999999999985 45555 48999999999999999864 3344444 99999999999998665
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=3.2e-07 Score=62.54 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=33.2
Q ss_pred EEEeecccccccCCC-CcCCCCccEEEccCCc-ccccCCChhhhcC----CCCcEEEcccC-eeecccChhhhCCCCCcE
Q 038012 73 FMDFSNNIFSGAIPY-LHILKNLTHLDLSNNL-LTGVISSTPWEQL----LNLVFVDLSNN-SLNGNISLFLFELSMLQR 145 (171)
Q Consensus 73 ~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~-~~~~l~~~~~~~l----~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~ 145 (171)
.||++++.++...-. +..+++|++|++++|. +++.--..+ ..+ ++|+.|++++| ++++..-..+..+++|++
T Consensus 65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred EEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 344444444332222 4444555555555543 332211121 221 24555555554 244433334445555555
Q ss_pred EEcccc
Q 038012 146 LQLADN 151 (171)
Q Consensus 146 L~l~~n 151 (171)
|+++++
T Consensus 144 L~L~~c 149 (176)
T 3e4g_A 144 LFLSDL 149 (176)
T ss_dssp EEEESC
T ss_pred EECCCC
Confidence 555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=4.4e-07 Score=68.86 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=87.2
Q ss_pred eeceeEEEeecCCCccccccccc--CCCCCcEEEecC--CCcCCc-----cchhhh--cCCCcceeccccEEEeeccccc
Q 038012 14 RCDKAVFSLAQYFLSGPIHPSLA--NLQSLSEIYLDN--INLSST-----IPEFLA--DFSNLTSFISAIFMDFSNNIFS 82 (171)
Q Consensus 14 ~~~l~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~~~~~--~l~~L~~L~~l~~l~l~~n~~~ 82 (171)
.++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +.+.+. .+++|+ +|++.+|.+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr------~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK------WLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC------EEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC------EEeCCCCCCc
Confidence 46899999999887754444443 789999999863 221111 111121 345565 7799999887
Q ss_pred ccCCC----CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecccChhhhC-CCCCcEEEccccc
Q 038012 83 GAIPY----LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152 (171)
Q Consensus 83 ~~~~~----~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~ 152 (171)
..... ...+++|++|+++.|.+.+. ++..+ ..+++|+.|+++.|.+.......+.. + ...++++.++
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 43222 34578999999999999853 33333 56789999999999887655555554 3 3567888776
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1.6e-06 Score=59.10 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=47.4
Q ss_pred CCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccc-ccccCCC-CcCC----CCccEEEccCCc-ccccCCCh
Q 038012 39 QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI-FSGAIPY-LHIL----KNLTHLDLSNNL-LTGVISST 111 (171)
Q Consensus 39 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~-~~~~~~~-~~~l----~~L~~l~l~~n~-~~~~l~~~ 111 (171)
..|+.|+++++.+++.--..+..+++|+ .|+++++. ++...-. ++.+ ++|++|++++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~------~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVE------KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCC------EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCC------EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 3566677776666543333444444444 55666664 4432222 4443 357777777764 65433334
Q ss_pred hhhcCCCCcEEEcccCe-ee
Q 038012 112 PWEQLLNLVFVDLSNNS-LN 130 (171)
Q Consensus 112 ~~~~l~~L~~L~l~~n~-~~ 130 (171)
+ ..+++|+.|+++++. ++
T Consensus 135 L-~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCC
T ss_pred H-hcCCCCCEEECCCCCCCC
Confidence 3 667778888877763 44
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.86 E-value=0.00017 Score=54.94 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=71.5
Q ss_pred ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------cccEEEeecccccccCCC-CcCCCCccE
Q 038012 33 PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---------------SAIFMDFSNNIFSGAIPY-LHILKNLTH 96 (171)
Q Consensus 33 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~ 96 (171)
.++..+..++.+.+..+... .....|..+..++... +|+.+.+..+ +..+... +..+.+|+.
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 34555666666666554332 2222333333333221 2335565543 4444444 788888988
Q ss_pred EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012 97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
+.+.++ +. .++...|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++..+
T Consensus 325 i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 888654 55 666666888999999988776 55456678888999999988765
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.00028 Score=53.34 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=74.1
Q ss_pred cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCC
Q 038012 32 HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS 110 (171)
Q Consensus 32 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~ 110 (171)
..++..+..|+.+.+..+ ++..-...|..+..++ .+.+..+ +..+... +..+++|+.+.+.++.+. .++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~------~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~ 303 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK------TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEP 303 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC------EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhc------ccccccc-ceeccccccccccccccccccccccc-eehh
Confidence 344566677777777654 4433344566666666 4455433 4444444 788888888888888776 6777
Q ss_pred hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012 111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151 (171)
Q Consensus 111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (171)
..|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 77888888988888754 55455667888888888887654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.00022 Score=54.36 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=79.9
Q ss_pred cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCC
Q 038012 32 HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS 110 (171)
Q Consensus 32 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~ 110 (171)
..+|..+..|+.+.+..+..+ .-...|..+..|+ .+.+. +.++.+... +..+.+|+.+.+..+ ++ .+..
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~------~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~ 327 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQ------DIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILD 327 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCC------EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccc------cccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence 345667788888888765443 3445677777777 44554 445555555 888999999999765 54 5666
Q ss_pred hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
..|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 66899999999998755 5545567899999999999987754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.00035 Score=53.20 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=81.8
Q ss_pred ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012 16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL 94 (171)
Q Consensus 16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L 94 (171)
.++.+.+...... ....++.++..|+.+.+.. .++..-...|.++.+|+ .+++..+ ++.+... +..|.+|
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~------~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLK------SIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC------EEECCTT-CCEECTTTTTTCTTC
T ss_pred cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcC------EEEeCCc-ccEehHhHhhCCCCC
Confidence 3556666544322 2345677889999999974 45544456888888888 5577654 5555555 9999999
Q ss_pred cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012 95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 153 (171)
+.+.+..+ ++ .+....|.+|.+|+.+++.++.... .++....+|+.+.+..+.+
T Consensus 337 ~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99999765 65 6777779999999999999875441 4566778888888776654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.58 E-value=0.0011 Score=50.02 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=83.4
Q ss_pred ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhh
Q 038012 35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPW 113 (171)
Q Consensus 35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~ 113 (171)
+.....++...+..+ ++......|..+..|+ .+.+..+ ++.+... +..+..++.+.+..+ +. .++...|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~------~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALD------EIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC 282 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCC------EEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccce------EEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence 444556666666544 2223334555666666 4466554 4444444 788889999988665 44 5677778
Q ss_pred hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccC
Q 038012 114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDT 170 (171)
Q Consensus 114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 170 (171)
..|.+|+.+.+.++.++.....+|.++.+|+.+.+..+ + ..+.+.++....+|+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCE
Confidence 99999999999988887666788999999999999765 3 2555544444444543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=1.9e-05 Score=54.65 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=65.6
Q ss_pred cccCCCCCcEEEecCC-CcCCc----cchhhhcCCCcceeccccEEEeecccccccCCC-----CcCCCCccEEEccCCc
Q 038012 34 SLANLQSLSEIYLDNI-NLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-----LHILKNLTHLDLSNNL 103 (171)
Q Consensus 34 ~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-----~~~l~~L~~l~l~~n~ 103 (171)
.+..-+.|+.|++++| .+.+. +-+.+..=+.| +.|+|++|.+...... +..-++|++|++++|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L------~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI------EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC------CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCc------CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3445677888888774 66532 12222222333 3668888887643222 4556788888888888
Q ss_pred ccccCCChhhh---cCCCCcEEEcccC---eeecc----cChhhhCCCCCcEEEcccccc
Q 038012 104 LTGVISSTPWE---QLLNLVFVDLSNN---SLNGN----ISLFLFELSMLQRLQLADNQF 153 (171)
Q Consensus 104 ~~~~l~~~~~~---~l~~L~~L~l~~n---~~~~~----~~~~~~~l~~L~~L~l~~n~l 153 (171)
|.+.....+.. .-+.|+.|++++| .+... +..++..=+.|+.|+++.|.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 87432222222 2346888888754 33322 233444447788888877654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00058 Score=43.98 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=18.7
Q ss_pred CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012 93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
.++.|++++|.++ .+|...|..+++|+.|++++|.+.
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 3455555555554 444444455555555555555443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.19 E-value=0.001 Score=50.62 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=70.9
Q ss_pred cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChh
Q 038012 34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTP 112 (171)
Q Consensus 34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~ 112 (171)
++..+.+|+.+.+..+ ++..-..+|.++.+|+ .+++..+ ++.+... +..|++|+.+.+..+ +. .++...
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~------~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV------SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC------EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCC------EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHH
Confidence 3556677777777654 4433345677777777 5577543 6655555 999999999999877 65 677777
Q ss_pred hhcCCCCcEEEcccCeeecccChhhhCCCCCcEE
Q 038012 113 WEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL 146 (171)
Q Consensus 113 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 146 (171)
|.+|.+|+.+++..+ ++ ....+|.++++|+.+
T Consensus 362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 999999999999765 33 234567777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.00089 Score=43.10 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=43.0
Q ss_pred EEEccCCccc-ccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012 96 HLDLSNNLLT-GVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154 (171)
Q Consensus 96 ~l~l~~n~~~-~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (171)
.++.+++.++ ..+|..+ -.+++.|++++|+++...+..|..+++|+.|++++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2455532 346899999999999766778899999999999999864
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.06 E-value=0.0004 Score=48.03 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=74.9
Q ss_pred eceeEEEeecC-CCcc----cccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC---
Q 038012 15 CDKAVFSLAQY-FLSG----PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--- 86 (171)
Q Consensus 15 ~~l~~L~l~~n-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~--- 86 (171)
+.+++|+++++ .+.+ .+.+++...++|+.|+|++|.+.+.--..+.. .|+.-..|+.|+|++|.+.....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~--aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE--LIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH--HHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH--HHhcCCccCeEecCCCcCCHHHHHHH
Confidence 47899999986 7753 25566778899999999999998432222221 11122234478999999985322
Q ss_pred -C-CcCCCCccEEEccCC---ccccc----CCChhhhcCCCCcEEEcccCeee
Q 038012 87 -Y-LHILKNLTHLDLSNN---LLTGV----ISSTPWEQLLNLVFVDLSNNSLN 130 (171)
Q Consensus 87 -~-~~~l~~L~~l~l~~n---~~~~~----l~~~~~~~l~~L~~L~l~~n~~~ 130 (171)
+ +..-++|+.|+++++ .+.+. +... +..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCcc
Confidence 2 666788999999865 34321 2223 255578999999877543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.30 E-value=4.8 Score=24.13 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=26.2
Q ss_pred ccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEccc
Q 038012 81 FSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126 (171)
Q Consensus 81 ~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~ 126 (171)
++.+... +..|+.|+.+.+..+ ++ .+....|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 3443333 677777777777654 32 34444467777777776655
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=28.31 E-value=17 Score=14.87 Aligned_cols=12 Identities=8% Similarity=0.385 Sum_probs=8.6
Q ss_pred CCCCCcccceec
Q 038012 5 RDFSDWNNVRCD 16 (171)
Q Consensus 5 ~~~~~~~~~~~~ 16 (171)
+..|+|.|....
T Consensus 5 dgacswrglenh 16 (23)
T 3ox7_P 5 DGACSWRGLENH 16 (26)
T ss_pred Ccccccccchhh
Confidence 567999887643
Done!