BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038013
         (494 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
          Length = 637

 Score = 32.7 bits (73), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 338 FYPSGFPVSFYPETTYWGC--AVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGD 395
            YP+G   S  PE   W    ++PG  N+  + P  +++   VP T   PTL      G 
Sbjct: 334 IYPNGLSTSL-PEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGL 392

Query: 396 I----ITPASTEKEEPSTGSRNSERCVLV-----PKTLRIDDPSEAAKSSIWATLGIKNE 446
                    +  +E    G        L      P  LR D+          + +G+  +
Sbjct: 393 FHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDE----------SYIGVMID 442

Query: 447 KTTSAGECL-FKGFQSKSDHRNYIAETSEVLQANPAALSRSLNF 489
             T+ G    ++ F S+S++R YI + + +L+   A L R L  
Sbjct: 443 DLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRL--AKLGRELGL 484


>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
           Sap
 pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
           With Maltotetraose
          Length = 877

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 201 KSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSD 260
           K + A N   IMI E  RTFQ +  G   KP            +D    +S  +V   SD
Sbjct: 472 KEAKAINPNMIMIGEGWRTFQGD-QGKPVKP------------ADQDWMKSTDTVGVFSD 518

Query: 261 KSQNCLRNGF 270
             +N L++GF
Sbjct: 519 DIRNSLKSGF 528


>pdb|3IYN|N Chain N, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
          Length = 585

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 319 YFPGPPWPHHWNTPMPPPGFYPSGFPV 345
           YF       HW   +PPPGFY  GF V
Sbjct: 380 YFTNAILNPHW---LPPPGFYTGGFEV 403


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,994,591
Number of Sequences: 62578
Number of extensions: 640708
Number of successful extensions: 926
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 5
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)