BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038014
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 96/105 (91%)
Query: 31 VIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 90
++KEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48 MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107
Query: 91 KTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAG 135
KTVNGDDICWA+A LGFD+YA QLK+YLHRYR LEGE+ N + G
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKG 152
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/109 (71%), Positives = 94/109 (86%), Gaps = 1/109 (0%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+ ++DRLLPIANVGR+MKQILP NAKISKEAK+T+QEC +EFISFVT EAS+KCH+E RK
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRK 60
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNNNG 140
TVNGDDI WAL+TLG DNYAD + R+LH+YRE E ER NK G+N++G
Sbjct: 61 TVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK-GSNDSG 108
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 94/118 (79%)
Query: 22 ASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEA 81
A G + G ++EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EA
Sbjct: 9 AGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEA 68
Query: 82 SDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNNN 139
SDKC KEKRKTVNGDD+ WA+ATLGF++Y + LK YL RYRELEG+ K+G+ +N
Sbjct: 69 SDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSN 126
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 85/97 (87%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRELEGERA 129
+NGDD+ WA+ TLGF++Y + LK YL R+RE+EGER
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 88/107 (82%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
++EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EASDKC +EKRK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNN 138
T+NGDD+ WA+ATLGF++Y D LK YL RYRE+EG+ K G ++
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESS 133
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 86/101 (85%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
KEQDR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNK 133
+NGDDI WA+ TLGF++Y LK YL +YR+ EGE+ N K
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK 135
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 90/110 (81%), Gaps = 3/110 (2%)
Query: 24 SGTDQDG---VIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGE 80
SG +DG +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGE
Sbjct: 8 SGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGE 67
Query: 81 ASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERAN 130
ASDKC +EKRKT+NGDD+ WA+ TLGF++Y + LK YL +YRE+EGE+
Sbjct: 68 ASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 87/107 (81%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
++EQDR LPIAN+ RIMK+ LP N KI+K+AKE +QECVSEFISFVT EASDKC +EKRK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNN 138
T+NGDD+ WA+ATLGF++Y + LK YL RYRE+EG+ K G+ N
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPN 134
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 89/107 (83%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
++EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNN 138
T+NGDD+ WA+ATLGF++Y + LK YL +YRE+EG+ KAG+ +
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGS 142
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 91/116 (78%)
Query: 23 SSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS 82
S + G ++EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISFVT EAS
Sbjct: 23 SGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEAS 82
Query: 83 DKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNNN 138
DKC KEKRKT+NG+D+ +A+ TLGF+ Y D LK YLH+YRE+ G+ +KAG+ +
Sbjct: 83 DKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGS 138
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 84/96 (87%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
++EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEGE 127
T+NGDD+ WA+ATLGF++Y + LK YL +YRE+EG+
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 93/115 (80%)
Query: 22 ASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEA 81
S+G +++ ++EQDR +PIANV RIM++ILP +AKIS ++KET+QECVSE+ISF+TGEA
Sbjct: 46 TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105
Query: 82 SDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGN 136
+++C +E+RKT+ +D+ WA++ LGFD+Y + L YLHRYRELEGER AG+
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGS 160
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 81/95 (85%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
KEQDR LPIAN+GRIM++ +P N KI+K++KE++QECVSEFISF+T EASDKC KEKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRELEGE 127
+NGDD+ W++ TLGF++Y + LK YL YRE EG+
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 81/99 (81%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+EQDR LPIAN+ RIMK+ LP NAK++K+AKET+Q+CVSEFISF+T EASDKC +EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQ 131
+NG+DI A+ +LGF+NY + LK YL +YRE E N+
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNK 145
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+EQD LPIANV RIMK +P + KI+K+AKE +QECVSEFISF+T EAS++CH+EKRKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
+NG+DI +A++TLGFD+Y + LK+YL +YRE ++GE+
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK 150
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 83/100 (83%)
Query: 31 VIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 90
V +EQD+ +PIANV RIM++ LP +AKIS +AKET+QECVSE+ISFVTGEA+++C +E+R
Sbjct: 56 VAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQR 115
Query: 91 KTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGERAN 130
KT+ +DI WA++ LGFDNY D L +++RYRE+E +R +
Sbjct: 116 KTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGS 155
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGER 128
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+EQD LPIANV RIMK +P KI+K+AKE +QECVSEFISF+T EAS++CH+EKRK
Sbjct: 50 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 109
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRE-LEGERA 129
T+NG+DI +A++TLGFD+Y + LK YL ++RE ++GE+
Sbjct: 110 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 148
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 21 GASSGT-DQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTG 79
+SSG+ Q ++EQDR LPI NV R+MK LPP+AK+SK+AKE MQECVSE ISFVT
Sbjct: 23 ASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTS 82
Query: 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRE 123
EASD+C +KRKT+NG+DI +L LGF+NYA+ LK YL +YR+
Sbjct: 83 EASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 75/93 (80%)
Query: 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDD 97
LLPIANV RIMK LP NAKISKEAK+ +Q+CVSEFISFVTGEAS++C +EKRKT+ G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 98 ICWALATLGFDNYADQLKRYLHRYRELEGERAN 130
+ AL TLGF+NYA+ LK L +YRE + A+
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSAS 103
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 71/95 (74%)
Query: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
+ EQDR LPI NV R+MK LP K+SK+AKE MQECVSEFISFVT EA D+C KRK
Sbjct: 20 LAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRK 79
Query: 92 TVNGDDICWALATLGFDNYADQLKRYLHRYRELEG 126
T+NG+DI +L LGF+NYA+ LK YL +YR+ +
Sbjct: 80 TINGEDILLSLHALGFENYAEVLKIYLAKYRQQQA 114
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Query: 66 MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRE-L 124
+QECVSEFISF+T EAS++CH+EKRKT+NG+DI +A++TLGFD+Y + LK YL ++RE +
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 125 EGERA 129
+GE+
Sbjct: 61 KGEKG 65
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP+AN+ R++K++LP AKI AK +C EF+ FV EAS+K E R+TV +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 99 CWALATLGFDNYADQLKRYLHRYRELEGERANQNK 133
+ LGFD Y D + Y+H YRE ERA N+
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREF--ERAGGNR 126
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 56/80 (70%)
Query: 35 QDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVN 94
+D LP A + +I+K++LPP+ +++++A++ + EC EFI+ V+ E++D C+KE ++T+
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 95 GDDICWALATLGFDNYADQL 114
+ + AL LGF Y +++
Sbjct: 72 PEHVLKALQVLGFGEYIEEV 91
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 34 EQDRL-LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
E D L LP A++ +I+K+++P +++ E++E + C SEFI ++ EA++ C+ +KT
Sbjct: 14 EDDELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKT 72
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYRELEGERANQNKAGNN 137
+N + + AL LGF +Y + + LH +E+ +R Q+ N
Sbjct: 73 INAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLEN 117
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 55/90 (61%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
KE + LP A V +++K++LP + K S E ++ + EC EFI ++ EA+D C +E+++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+ + + AL LGF +Y ++ +++
Sbjct: 67 IAAEHVIKALTELGFSDYTQKVSDVYDKHK 96
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 20 VGASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTG 79
+ +SSG D D I P A + +++K+ LP N +++ +A+E + C +EFI ++
Sbjct: 1 MASSSGNDDDLTI-------PRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISS 52
Query: 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGER 128
EA++ C+K ++KT++ + + AL +LGF +Y ++K L + + +R
Sbjct: 53 EANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 20 VGASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTG 79
+ +SSG D D I P A + +++K+ LP N +++ +A+E + C +EFI ++
Sbjct: 1 MASSSGNDDDLTI-------PRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISS 52
Query: 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGER 128
EA++ C+K ++KT++ + + AL +LGF +Y ++K L + + +R
Sbjct: 53 EANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 20 VGASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTG 79
+ +SSG D D I P A + +++K+ LP N +++ +A+E + C +EFI ++
Sbjct: 1 MASSSGNDDDLTI-------PRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISS 52
Query: 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGER 128
EA++ C+K ++KT++ + + AL +LGF +Y ++K L + + +R
Sbjct: 53 EANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 20 VGASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTG 79
+ +SSG D D I P A + +++K+ LP N +++ +A+E + C +EFI ++
Sbjct: 1 MASSSGNDDDLTI-------PRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISS 52
Query: 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGER 128
EA++ C+K ++KT++ + + AL +LGF +Y ++K L + + +R
Sbjct: 53 EANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP A V +++ ILP + +KEA++ + EC EFI V+ EA++ C KE +KT+ + I
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 99 CWALATLGFDNYADQLKRYLHRYRELEGERANQNK 133
AL L F K Y+ E+ E Q K
Sbjct: 72 IKALENLEF-------KEYIAEALEVAAEHKEQQK 99
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+ +D LP A + RI+K+ LP ISKEA+ + S F+ + T A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+N D+ A+ + F + LK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+ +D LP A + RI+K+ LP ISKEA+ + S F+ + T A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+N D+ A+ + F + LK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+ +D LP A + RI+K+ LP ISKEA+ + S F+ + T A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+N D+ A+ + F + LK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+ +D LP A + RI+K+ LP ISKEA+ + S F+ + T A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+N D+ A+ + F + LK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92
+ +D LP A + RI+K+ LP ISKEA+ + S F+ + T A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 93 VNGDDICWALATLGFDNYADQLKRYLHRYR 122
+N D+ A+ + F + LK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYR 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 36 DRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG 95
D LP + + R++K +LP + + KEA + M + F+SF+T + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 96 DDICWALATLGFDNYADQLKRYLHRY 121
D+ AL + + ++ LK++L Y
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP A V RI+K LP +KE++ + + +I ++T + D R T++ D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 99 CWALATLGFDNYADQLKRYL 118
A+ + F+N+ QL+ YL
Sbjct: 67 FQAIEEIDFENFKPQLEEYL 86
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP A V +++ +IL + +K+A+E + EFI ++ AS+ E +KT+ + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 99 CWALATLGFDNYADQLKRYLHRYR 122
AL L ++ + L+ L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 43/93 (46%)
Query: 36 DRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG 95
D L P + + + K+ LP +A ISK+A +Q + F+S++ + RK +
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 96 DDICWALATLGFDNYADQLKRYLHRYRELEGER 128
D+ AL + + + + ++ + + +R
Sbjct: 94 QDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQR 126
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 38 LLPIANVGRIMKQIL-------PPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 90
L P A V ++ K I+ N ++K++ +Q + F+S + +A E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 91 KTVNGDDICWALATLGFDNYADQLKRYLHRY 121
KT+N DI AL F + ++K+ L +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|Q60264|HJA4_METJA Probable archaeal histone 4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL29 PE=3 SV=1
Length = 67
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP+A RI+K++ ++S+ A E + E E + EA D KRKTV +DI
Sbjct: 4 LPVAPFERILKKV--GAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVEDI 61
Query: 99 CWAL 102
AL
Sbjct: 62 KLAL 65
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LPIA VGRI+K P ++S +A++ + + + E + EA RKTV DI
Sbjct: 4 LPIAPVGRIIKNAGAP--RVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASDI 61
Query: 99 CWAL 102
A+
Sbjct: 62 EMAV 65
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP+A RI+K+ ++S+ A E + E V E + EA + KRKTV +DI
Sbjct: 4 LPVAPFERILKK--AGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 99 CWAL 102
AL
Sbjct: 62 KLAL 65
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 39 LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98
LP+A RI+K+ ++S+ A E + E V E + EA + KRKTV +DI
Sbjct: 4 LPVAPFERILKK--AGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 99 CWAL 102
AL
Sbjct: 62 KLAL 65
>sp|P06146|H2BS2_LYTPI Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3
Length = 143
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 46 RIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105
R++KQ+ P + IS M V++ + GEAS C +R+T++ +I A+ L
Sbjct: 61 RVLKQVHP-DTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTISSREIQTAVRLL 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,077,638
Number of Sequences: 539616
Number of extensions: 2084478
Number of successful extensions: 4774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 4698
Number of HSP's gapped (non-prelim): 107
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)