Query 038014
Match_columns 140
No_of_seqs 107 out of 695
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 1E-29 3.6E-34 198.3 12.0 100 32-132 9-108 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 9.5E-30 3.2E-34 189.1 10.7 103 33-135 4-106 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 4.4E-29 1.5E-33 175.4 10.8 92 32-123 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.8 2.4E-21 8.3E-26 131.7 7.0 68 37-105 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 1.1E-20 3.8E-25 144.3 7.2 75 37-112 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 8.1E-20 2.8E-24 121.1 7.4 66 38-105 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 1.1E-19 3.6E-24 132.0 8.1 91 34-126 3-95 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 1.7E-18 5.9E-23 130.2 2.9 97 34-131 15-115 (140)
9 1f1e_A Histone fold protein; a 99.7 1.7E-17 5.9E-22 126.6 8.4 74 29-104 73-146 (154)
10 2hue_C Histone H4; mini beta s 99.7 2.2E-17 7.4E-22 114.2 6.6 78 31-110 3-80 (84)
11 1id3_B Histone H4; nucleosome 99.7 5E-17 1.7E-21 116.3 7.5 81 28-110 18-98 (102)
12 1ku5_A HPHA, archaeal histon; 99.7 1.3E-16 4.6E-21 106.4 7.4 64 38-103 6-69 (70)
13 1n1j_B NF-YC; histone-like PAI 99.7 1.6E-16 5.5E-21 112.3 7.0 80 32-112 13-92 (97)
14 4g92_C HAPE; transcription fac 99.7 2.6E-16 9E-21 115.1 8.1 77 34-111 37-113 (119)
15 1tzy_D Histone H4-VI; histone- 99.6 5.4E-16 1.9E-20 110.8 7.9 79 30-110 21-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 6.7E-16 2.3E-20 110.4 7.0 78 31-110 22-99 (103)
17 1jfi_A Transcription regulator 99.4 6.4E-14 2.2E-18 99.2 4.8 77 35-112 8-84 (98)
18 2hue_B Histone H3; mini beta s 99.4 2.4E-13 8.1E-18 93.1 7.2 71 36-106 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.3 1.4E-12 4.8E-17 93.2 6.6 72 32-103 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.3 3.3E-12 1.1E-16 88.3 7.6 70 37-106 2-76 (82)
21 1tzy_C Histone H3; histone-fol 99.3 6.2E-12 2.1E-16 94.2 6.9 74 33-106 57-133 (136)
22 3r45_A Histone H3-like centrom 99.3 6.5E-12 2.2E-16 95.8 6.4 72 33-104 72-148 (156)
23 3nqu_A Histone H3-like centrom 99.3 1.1E-11 3.6E-16 93.3 7.3 75 33-107 56-135 (140)
24 1taf_B TFIID TBP associated fa 99.1 4.1E-10 1.4E-14 75.7 7.8 65 37-103 5-69 (70)
25 2ly8_A Budding yeast chaperone 99.1 2.9E-10 1E-14 83.6 7.2 73 38-110 1-117 (121)
26 3vh5_A CENP-S; histone fold, c 99.0 4.4E-10 1.5E-14 84.4 5.6 63 43-105 24-87 (140)
27 4dra_A Centromere protein S; D 98.9 2.1E-09 7.3E-14 78.1 6.8 75 43-123 32-107 (113)
28 3v9r_A MHF1, uncharacterized p 98.9 3E-09 1E-13 74.5 6.8 63 43-105 17-80 (90)
29 3b0b_B CENP-S, centromere prot 98.9 3.2E-09 1.1E-13 76.5 7.0 75 43-123 24-99 (107)
30 1taf_A TFIID TBP associated fa 98.9 9.5E-09 3.3E-13 68.6 7.6 61 42-104 5-65 (68)
31 2l5a_A Histone H3-like centrom 98.8 1E-08 3.6E-13 82.6 6.6 72 35-106 8-85 (235)
32 2nqb_C Histone H2A; nucleosome 98.6 8.2E-08 2.8E-12 70.5 7.6 70 34-104 19-88 (123)
33 2l5a_A Histone H3-like centrom 98.6 1.7E-08 5.8E-13 81.3 4.0 61 44-106 167-227 (235)
34 2f8n_G Core histone macro-H2A. 98.6 1E-07 3.5E-12 69.7 7.5 70 34-104 18-87 (120)
35 1tzy_A Histone H2A-IV; histone 98.6 1E-07 3.6E-12 70.5 7.6 70 34-104 21-90 (129)
36 1id3_C Histone H2A.1; nucleoso 98.6 9.7E-08 3.3E-12 70.8 7.0 72 32-104 19-90 (131)
37 1f66_C Histone H2A.Z; nucleoso 98.6 1.2E-07 4.2E-12 70.0 7.5 71 34-104 23-93 (128)
38 2f8n_K Histone H2A type 1; nuc 98.5 2.2E-07 7.5E-12 70.4 7.5 70 34-104 40-109 (149)
39 2jss_A Chimera of histone H2B. 98.4 6.1E-07 2.1E-11 69.9 7.0 71 34-104 101-171 (192)
40 2nqb_D Histone H2B; nucleosome 98.3 1.8E-06 6.1E-11 63.5 7.3 63 42-105 37-99 (123)
41 1tzy_B Histone H2B; histone-fo 98.3 2.3E-06 7.9E-11 63.1 7.2 67 41-108 39-105 (126)
42 4dra_E Centromere protein X; D 98.1 1.3E-05 4.4E-10 55.4 8.3 70 36-105 10-80 (84)
43 1h3o_B Transcription initiatio 98.0 2.6E-05 9E-10 52.9 8.0 66 38-104 5-70 (76)
44 3b0b_C CENP-X, centromere prot 98.0 2.8E-05 9.6E-10 53.3 7.9 71 35-105 5-76 (81)
45 2jss_A Chimera of histone H2B. 97.9 2.7E-05 9.2E-10 60.6 7.8 63 42-105 7-69 (192)
46 1bh9_B TAFII28; histone fold, 97.7 0.00015 5.2E-09 50.3 7.4 67 38-106 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 96.8 0.0028 9.7E-08 44.0 5.8 49 39-87 2-51 (88)
48 3uk6_A RUVB-like 2; hexameric 91.6 0.46 1.6E-05 37.7 6.8 80 39-118 259-344 (368)
49 3ksy_A SOS-1, SON of sevenless 90.5 0.92 3.2E-05 42.6 8.5 69 34-104 100-168 (1049)
50 1r4v_A Hypothetical protein AQ 90.3 0.36 1.2E-05 37.0 4.6 79 15-98 4-84 (171)
51 1fnn_A CDC6P, cell division co 85.9 3.3 0.00011 32.5 7.9 75 39-113 193-282 (389)
52 2v1u_A Cell division control p 84.7 2.1 7.2E-05 33.4 6.2 66 41-106 203-277 (387)
53 1wwi_A Hypothetical protein TT 84.1 2.2 7.6E-05 31.9 5.7 59 38-98 2-60 (148)
54 2c9o_A RUVB-like 1; hexameric 82.2 2.9 9.9E-05 34.9 6.4 66 39-104 366-436 (456)
55 2qby_A CDC6 homolog 1, cell di 80.7 5.4 0.00018 31.0 7.1 72 39-110 197-277 (386)
56 3kw6_A 26S protease regulatory 80.3 1.5 5.2E-05 27.9 3.2 32 74-105 42-73 (78)
57 1khy_A CLPB protein; alpha hel 73.1 9 0.00031 26.5 5.9 38 57-106 5-42 (148)
58 2dzn_B 26S protease regulatory 72.7 3.5 0.00012 26.6 3.3 28 79-106 42-69 (82)
59 1g8p_A Magnesium-chelatase 38 72.3 14 0.00049 28.5 7.4 51 55-105 265-322 (350)
60 2y1q_A CLPC N-domain, negative 70.9 7.1 0.00024 27.1 4.9 38 57-106 5-42 (150)
61 2r44_A Uncharacterized protein 70.7 20 0.00067 27.9 7.9 50 55-104 224-296 (331)
62 3k1j_A LON protease, ATP-depen 70.7 20 0.00067 31.1 8.6 49 56-104 313-374 (604)
63 3vlf_B 26S protease regulatory 70.4 3.7 0.00013 27.0 3.1 35 74-108 40-74 (88)
64 3aji_B S6C, proteasome (prosom 69.8 3.6 0.00012 26.3 2.9 33 74-106 40-72 (83)
65 2qby_B CDC6 homolog 3, cell di 68.6 9.6 0.00033 29.9 5.7 66 39-106 197-271 (384)
66 2krk_A 26S protease regulatory 68.1 5.1 0.00017 26.4 3.4 32 74-105 50-81 (86)
67 3fh2_A Probable ATP-dependent 67.0 12 0.0004 26.3 5.4 37 57-105 6-42 (146)
68 3fes_A ATP-dependent CLP endop 66.7 12 0.00042 26.2 5.4 38 57-106 7-44 (145)
69 1in4_A RUVB, holliday junction 61.7 19 0.00066 28.4 6.3 67 42-108 183-253 (334)
70 3pm8_A PFCDPK2, calcium-depend 61.0 16 0.00056 26.2 5.4 82 25-108 6-89 (197)
71 3fh2_A Probable ATP-dependent 57.8 33 0.0011 23.8 6.4 39 56-106 80-118 (146)
72 1k6k_A ATP-dependent CLP prote 57.3 7.8 0.00027 26.7 2.9 24 80-103 12-35 (143)
73 3fes_A ATP-dependent CLP endop 55.5 37 0.0013 23.5 6.4 40 55-106 79-118 (145)
74 2chg_A Replication factor C sm 55.0 17 0.00058 25.3 4.5 63 39-103 161-224 (226)
75 3bos_A Putative DNA replicatio 54.2 32 0.0011 24.5 5.9 64 39-103 174-241 (242)
76 3h4m_A Proteasome-activating n 52.0 13 0.00044 28.1 3.6 33 73-105 226-258 (285)
77 2f3n_A SH3 and multiple ankyri 50.4 11 0.00037 24.0 2.6 23 93-115 5-27 (76)
78 1ich_A TNF-1, tumor necrosis f 48.5 47 0.0016 23.3 5.9 77 38-119 22-99 (112)
79 1lv7_A FTSH; alpha/beta domain 48.3 18 0.00062 27.0 3.9 34 73-106 220-253 (257)
80 2kru_A Light-independent proto 47.1 12 0.00042 23.9 2.4 51 55-106 3-54 (63)
81 3bq7_A Diacylglycerol kinase d 45.6 14 0.00049 23.8 2.6 25 92-116 9-33 (81)
82 3zri_A CLPB protein, CLPV; cha 45.5 24 0.00082 25.9 4.1 38 57-106 24-61 (171)
83 3pvs_A Replication-associated 43.2 50 0.0017 27.6 6.2 68 39-106 165-245 (447)
84 1k6k_A ATP-dependent CLP prote 42.9 61 0.0021 22.0 5.7 38 56-105 78-115 (143)
85 2gle_A Neurabin-1; SAM domain, 41.1 12 0.00041 23.5 1.6 22 93-114 7-28 (74)
86 4b4t_I 26S protease regulatory 40.5 24 0.00082 30.3 3.8 66 38-104 351-422 (437)
87 1w5s_A Origin recognition comp 40.2 81 0.0028 24.6 6.7 69 38-106 214-294 (412)
88 1njg_A DNA polymerase III subu 39.8 35 0.0012 23.8 4.1 63 39-102 185-248 (250)
89 2l09_A ASR4154 protein; proto- 39.8 15 0.00053 23.4 1.9 49 56-105 3-52 (62)
90 4b4t_J 26S protease regulatory 39.2 26 0.00089 29.6 3.8 33 72-104 356-388 (405)
91 1uxc_A FRUR (1-57), fructose r 39.0 37 0.0013 21.0 3.7 35 38-73 11-45 (65)
92 4b4t_L 26S protease subunit RP 38.9 26 0.0009 29.7 3.8 32 73-104 390-421 (437)
93 3pxg_A Negative regulator of g 38.5 56 0.0019 27.3 5.8 46 57-114 5-50 (468)
94 4b4t_M 26S protease regulatory 37.3 23 0.00078 30.1 3.2 33 73-105 390-422 (434)
95 2qz4_A Paraplegin; AAA+, SPG7, 37.2 16 0.00053 27.0 1.9 33 73-105 217-249 (262)
96 3zri_A CLPB protein, CLPV; cha 36.9 44 0.0015 24.5 4.4 38 56-105 97-135 (171)
97 4b4t_H 26S protease regulatory 36.9 25 0.00085 30.4 3.4 33 73-105 418-450 (467)
98 4b4t_K 26S protease regulatory 35.8 22 0.00077 30.0 2.9 32 73-104 382-413 (428)
99 1kw4_A Polyhomeotic; SAM domai 34.0 25 0.00087 23.3 2.4 25 92-116 16-41 (89)
100 3f8t_A Predicted ATPase involv 33.3 1.1E+02 0.0038 26.8 6.9 67 38-104 393-482 (506)
101 3oq9_A Tumor necrosis factor r 32.9 55 0.0019 21.8 3.9 72 38-119 9-85 (86)
102 1hqc_A RUVB; extended AAA-ATPa 32.6 52 0.0018 25.0 4.3 69 39-107 168-240 (324)
103 3mse_B Calcium-dependent prote 32.3 1.2E+02 0.0042 20.8 8.6 52 56-108 17-71 (180)
104 2d8c_A Phosphatidylcholine:cer 32.2 14 0.00049 25.1 0.9 22 93-114 20-41 (97)
105 3fwb_A Cell division control p 31.5 1.1E+02 0.0037 20.0 7.7 39 80-118 100-138 (161)
106 3i5g_B Myosin regulatory light 31.5 1.1E+02 0.0036 21.0 5.5 54 53-118 5-58 (153)
107 1tiz_A Calmodulin-related prot 31.3 71 0.0024 17.8 4.0 27 82-108 7-33 (67)
108 1wlz_A DJBP, CAP-binding prote 31.1 97 0.0033 19.2 5.0 29 80-108 28-56 (105)
109 1ixz_A ATP-dependent metallopr 31.0 30 0.001 25.6 2.7 29 74-102 225-253 (254)
110 3f9v_A Minichromosome maintena 30.6 13 0.00043 32.6 0.5 48 57-104 521-586 (595)
111 3pfi_A Holliday junction ATP-d 30.2 1.2E+02 0.0042 23.1 6.2 68 41-108 186-257 (338)
112 1iy2_A ATP-dependent metallopr 28.7 35 0.0012 25.8 2.7 29 74-102 249-277 (278)
113 3pxi_A Negative regulator of g 28.4 94 0.0032 27.4 5.8 40 57-108 5-44 (758)
114 3ezq_B Protein FADD; apoptosis 28.4 81 0.0028 22.1 4.4 37 84-121 56-92 (122)
115 2y1q_A CLPC N-domain, negative 27.8 58 0.002 22.2 3.6 38 56-105 78-115 (150)
116 3b9p_A CG5977-PA, isoform A; A 27.7 1.5E+02 0.0051 22.2 6.2 58 56-113 207-280 (297)
117 1jr3_D DNA polymerase III, del 27.5 91 0.0031 24.2 5.0 65 38-102 141-206 (343)
118 3ezq_A Tumor necrosis factor r 27.4 60 0.002 22.9 3.5 72 38-119 17-93 (115)
119 3li6_A Calcium-binding protein 27.3 55 0.0019 18.4 2.9 21 83-103 43-63 (66)
120 3qrx_A Centrin; calcium-bindin 25.9 1.5E+02 0.005 19.6 5.5 6 56-61 43-48 (169)
121 1yfs_A Alanyl-tRNA synthetase; 25.5 3.3E+02 0.011 23.6 8.7 51 85-135 371-428 (465)
122 1sxj_D Activator 1 41 kDa subu 25.5 57 0.0019 25.0 3.4 68 38-106 191-264 (353)
123 2kz2_A Calmodulin, CAM; TR2C, 25.2 1.1E+02 0.0037 19.1 4.3 28 81-108 34-61 (94)
124 1khy_A CLPB protein; alpha hel 24.9 59 0.002 22.1 3.1 25 79-103 92-116 (148)
125 3vfd_A Spastin; ATPase, microt 24.8 2.6E+02 0.0089 22.1 8.1 66 42-107 285-367 (389)
126 3nbx_X ATPase RAVA; AAA+ ATPas 23.1 3.5E+02 0.012 23.0 10.5 45 55-99 223-280 (500)
127 1lng_A SRP19, signal recogniti 23.1 34 0.0012 22.9 1.5 27 85-111 13-47 (87)
128 1h3o_A Transcription initiatio 23.0 1.4E+02 0.0048 19.5 4.5 40 44-85 12-51 (75)
129 1v85_A Similar to ring finger 22.9 40 0.0014 22.1 1.8 24 92-115 19-44 (91)
130 1bh9_A TAFII18; histone fold, 22.0 1.3E+02 0.0044 17.6 4.9 39 44-83 6-44 (45)
131 1jr3_A DNA polymerase III subu 22.0 91 0.0031 24.0 4.0 65 39-104 178-243 (373)
132 2joj_A Centrin protein; N-term 22.0 1.2E+02 0.0042 17.3 4.7 26 83-108 14-39 (77)
133 1avs_A Troponin C; muscle cont 21.9 1.3E+02 0.0046 18.0 4.2 28 81-108 25-52 (90)
134 2e8o_A SAM domain and HD domai 21.8 36 0.0012 22.9 1.4 21 94-114 31-53 (103)
135 1eex_A Propanediol dehydratase 21.7 4.1E+02 0.014 23.3 8.3 97 13-119 367-494 (554)
136 2ns0_A Hypothetical protein; r 21.2 1.6E+02 0.0055 19.7 4.6 34 86-119 18-51 (85)
137 3fs7_A Parvalbumin, thymic; ca 21.0 1.4E+02 0.0048 18.5 4.2 79 38-118 6-87 (109)
138 1s6j_A CDPK, calcium-dependent 20.7 1E+02 0.0035 18.3 3.4 35 82-116 29-63 (87)
139 2ktg_A Calmodulin, putative; e 20.6 1.4E+02 0.0048 17.5 4.5 28 81-108 19-46 (85)
140 2eam_A Putative 47 kDa protein 20.6 89 0.003 19.8 3.1 25 92-116 9-33 (80)
141 2mys_B Myosin; muscle protein, 20.5 1.6E+02 0.0055 19.4 4.7 22 86-107 35-56 (166)
142 2kn2_A Calmodulin; S MAPK phos 20.5 1.3E+02 0.0043 18.1 3.8 17 90-106 23-39 (92)
143 4ds7_A Calmodulin, CAM; protei 20.4 1.7E+02 0.006 18.5 8.7 82 39-120 44-128 (147)
144 3bs7_A Protein aveugle; sterIl 20.3 50 0.0017 20.6 1.8 22 94-115 7-30 (78)
145 2chq_A Replication factor C sm 20.1 1.7E+02 0.0059 21.6 5.1 64 39-104 161-225 (319)
146 2ovk_B RLC, myosin regulatory 20.0 1.4E+02 0.0048 19.5 4.2 32 86-117 26-57 (153)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=1e-29 Score=198.27 Aligned_cols=100 Identities=28% Similarity=0.618 Sum_probs=93.7
Q ss_pred cccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhH
Q 038014 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYA 111 (140)
Q Consensus 32 ~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~ 111 (140)
...+|+.||+++|.||||++|| +++||+||+++|++||++||+||+++|++.|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 5678999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038014 112 DQLKRYLHRYRELEGERANQN 132 (140)
Q Consensus 112 ~~l~~~l~~~re~~~~kk~q~ 132 (140)
++|+.+|+.||+..+.|+.++
T Consensus 88 ~~lk~~L~~yre~~~~kkr~~ 108 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRKAS 108 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccc
Confidence 999999999999998876543
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=9.5e-30 Score=189.08 Aligned_cols=103 Identities=32% Similarity=0.535 Sum_probs=88.2
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHH
Q 038014 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAD 112 (140)
Q Consensus 33 ~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~ 112 (140)
+++|+.||+|+|.||||.++|+..+||+||+.+|++||++||+||++.|++.|.+.+||||+++||+.||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC
Q 038014 113 QLKRYLHRYRELEGERANQNKAG 135 (140)
Q Consensus 113 ~l~~~l~~~re~~~~kk~q~k~~ 135 (140)
+|+.+|+.||+.++.|+..++..
T Consensus 84 ~lk~~l~~yr~~~~~kk~~~~~~ 106 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKESKASK 106 (128)
T ss_dssp HHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999888765443
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=4.4e-29 Score=175.42 Aligned_cols=92 Identities=63% Similarity=1.072 Sum_probs=85.8
Q ss_pred cccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhH
Q 038014 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYA 111 (140)
Q Consensus 32 ~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~ 111 (140)
++++|+.||+++|+||||+++|++.+||+||+.+|++|+++||.+|+.+|+++|.++|||||+++||..|++++||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 038014 112 DQLKRYLHRYRE 123 (140)
Q Consensus 112 ~~l~~~l~~~re 123 (140)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.84 E-value=2.4e-21 Score=131.66 Aligned_cols=68 Identities=16% Similarity=0.272 Sum_probs=64.7
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 37 RLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 37 ~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
..||+|+|.||||+++| +++||+||.++|++|+++|+++|+++|++.|.+++||||+++||+.|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 47999999999999998 689999999999999999999999999999999999999999999999764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.82 E-value=1.1e-20 Score=144.29 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=71.5
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHH
Q 038014 37 RLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAD 112 (140)
Q Consensus 37 ~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~ 112 (140)
..||+++|.||||++||. .|||+||.++|++|+++|+.+|+++|+++|.|+|||||+++||++||..|||++|..
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999985 999999999999999999999999999999999999999999999999999998754
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=8.1e-20 Score=121.08 Aligned_cols=66 Identities=29% Similarity=0.431 Sum_probs=63.8
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
.||+++|+||||+. ++.+||+||+.+|++|+++|+.+|+.+|+.+|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 6899999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.80 E-value=1.1e-19 Score=132.00 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=80.4
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHH
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQ 113 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~ 113 (140)
.+|..||++.|+||+|.. +..+||+++..+|.+|+++|+..++.+|..+|+|+|||||+++||+.||+++|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 367899999999999999 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHH
Q 038014 114 LKRYLHRY--RELEG 126 (140)
Q Consensus 114 l~~~l~~~--re~~~ 126 (140)
+...++.| +|+.+
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 99999999 55444
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.71 E-value=1.7e-18 Score=130.25 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=61.8
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCccCcccHHHHHHhc---CCch
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKC-HKEKRKTVNGDDICWALATL---GFDN 109 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a-~~~kRKTI~~eDVl~ALe~l---gf~~ 109 (140)
..++.||.++|+||||.. |+..+||++|..+|++|++.||.+|+..|+..| ...+||||+++||..|+... +|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999998 777899999999999999999999999999999 99999999999999999865 5555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 038014 110 YADQLKRYLHRYRELEGERANQ 131 (140)
Q Consensus 110 y~~~l~~~l~~~re~~~~kk~q 131 (140)
++-|.+..+.+|+++.+.++++
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 4558899999999988876544
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=1.7e-17 Score=126.61 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=70.4
Q ss_pred CCccccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 29 DGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 29 ~~~~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
.++...+++.||+++|.||||+. +..|||+||.+++++|+++|+.+|+.+|.++|.|+|||||+++||++||+.
T Consensus 73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45677899999999999999999 688999999999999999999999999999999999999999999999985
No 10
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.70 E-value=2.2e-17 Score=114.18 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=72.1
Q ss_pred ccccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchh
Q 038014 31 VIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNY 110 (140)
Q Consensus 31 ~~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y 110 (140)
+.+.....||+++|+||+|.. +..+||+|+.+++.+++++|+..++.+|..+|+|+|||||+++||..||+.+|++-|
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~--Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccccCCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 345566789999999999998 567999999999999999999999999999999999999999999999999998765
No 11
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.69 E-value=5e-17 Score=116.31 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCccccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCC
Q 038014 28 QDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 107 (140)
Q Consensus 28 ~~~~~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf 107 (140)
...+.+.....||+++|+||++.. +..+||.|+.++|.+++++|+..|+.+|.++|+|++||||+++||..||+.+|+
T Consensus 18 ~~k~~r~~i~~ip~~~I~Rlar~~--Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 18 HRKILRDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp ------CCGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 334556677789999999999998 567999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 038014 108 DNY 110 (140)
Q Consensus 108 ~~y 110 (140)
.-|
T Consensus 96 ~lY 98 (102)
T 1id3_B 96 TLY 98 (102)
T ss_dssp CEE
T ss_pred CCC
Confidence 765
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.67 E-value=1.3e-16 Score=106.35 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=61.9
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
.||+++|.||+|+. +..+||+++..+|+++++.|+..|+.+|+.+|.|+|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999998 67899999999999999999999999999999999999999999999985
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=1.6e-16 Score=112.33 Aligned_cols=80 Identities=25% Similarity=0.241 Sum_probs=68.6
Q ss_pred cccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhH
Q 038014 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYA 111 (140)
Q Consensus 32 ~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~ 111 (140)
....++.||.++|+||||.. |+..+||+||..++++|++.|+.+|+..|...|.+.|||||+++||..|++..++.+|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34456789999999999999 65579999999999999999999999999999999999999999999999998887775
Q ss_pred H
Q 038014 112 D 112 (140)
Q Consensus 112 ~ 112 (140)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 3
No 14
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.65 E-value=2.6e-16 Score=115.13 Aligned_cols=77 Identities=27% Similarity=0.302 Sum_probs=69.9
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhH
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYA 111 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~ 111 (140)
.....||.++|+||||.. |+..+||+||..++++|++.||.+|+..|...|...+||||+++||..|++..+..+|.
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 346679999999999987 77789999999999999999999999999999999999999999999999876655553
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.64 E-value=5.4e-16 Score=110.77 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=72.4
Q ss_pred CccccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCch
Q 038014 30 GVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDN 109 (140)
Q Consensus 30 ~~~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~ 109 (140)
.+.+.....||+++|.||++.. +..+||.|+.+.|.++++.|+..|+.+|..+|+|++||||+++||..||+.+|++.
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~--G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~l 98 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 98 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEE
T ss_pred cchhhhcccCCHHHHHHHHHHc--CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCC
Confidence 3456667779999999999999 44699999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 038014 110 Y 110 (140)
Q Consensus 110 y 110 (140)
|
T Consensus 99 Y 99 (103)
T 1tzy_D 99 Y 99 (103)
T ss_dssp E
T ss_pred c
Confidence 5
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.62 E-value=6.7e-16 Score=110.38 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=64.2
Q ss_pred ccccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchh
Q 038014 31 VIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNY 110 (140)
Q Consensus 31 ~~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y 110 (140)
+.+.....||+++|.||++.. +..+||.|+.+.|.++++.|+..|+.+|..+|+|++||||+++||..||+.+|++.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~--G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp --------CCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhccCCHHHHHHHHHHc--CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 345566679999999999998 446999999999999999999999999999999999999999999999999998655
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.44 E-value=6.4e-14 Score=99.24 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=59.8
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHH
Q 038014 35 QDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAD 112 (140)
Q Consensus 35 ~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~ 112 (140)
..+.||.++|+||||.. |+..+||.+|..++.+++|.|+.+|+..|...|.+.|||||+++||..|++.-+..+|..
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 45789999999999987 445699999999999999999999999999999999999999999999998765555544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.44 E-value=2.4e-13 Score=93.06 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred cccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 36 DRLLPIANVGRIMKQILP---PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 36 d~~LP~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
++.||++++.||+|+..+ ++.|++.+|..+||+++|.|+..|..+++.+|.|+||+||+++||..|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999943 57899999999999999999999999999999999999999999999987554
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.35 E-value=1.4e-12 Score=93.16 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=60.4
Q ss_pred cccccccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 32 IKEQDRLLPIANVGRIMKQILPP------NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 32 ~~~~d~~LP~A~V~RI~K~~lp~------~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
.+..++.||++++.||+|+...+ +.|++.+|..+||+++|.|+..|..+|+.+|.|+||+||++.||..|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 35688999999999999999632 6899999999999999999999999999999999999999999998863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=88.33 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=63.9
Q ss_pred ccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 37 RLLPIANVGRIMKQILP-----PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 37 ~~LP~A~V~RI~K~~lp-----~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+.||++++.||+|+... .+.|++.+|..+||+++|.|+..|..+|+.+|.|+||+||+++|+..|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57999999999999862 26799999999999999999999999999999999999999999999876444
No 21
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.28 E-value=6.2e-12 Score=94.16 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=67.8
Q ss_pred ccccccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 33 KEQDRLLPIANVGRIMKQILP---PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 33 ~~~d~~LP~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+..++.||++++.||+|+... ++.+++.+|+.+||+++|.|+..|+.+++.+|.|+||+||++.||..|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 457889999999999999943 57899999999999999999999999999999999999999999999986544
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.26 E-value=6.5e-12 Score=95.81 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccccccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 33 KEQDRLLPIANVGRIMKQILP-----PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 33 ~~~d~~LP~A~V~RI~K~~lp-----~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
+..++.||++++.||+|+... .+.+++.+|+.+||+++|.|+..|+.+|+.+|.|+||+||+++||..|+.-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 568899999999999999963 257999999999999999999999999999999999999999999998754
No 23
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.26 E-value=1.1e-11 Score=93.30 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=65.9
Q ss_pred ccccccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCC
Q 038014 33 KEQDRLLPIANVGRIMKQILP-----PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 107 (140)
Q Consensus 33 ~~~d~~LP~A~V~RI~K~~lp-----~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf 107 (140)
+..++.||++++.||+|+... .+.+++.+|+.+||+++|.|+..|+.+|+.+|.|+||+||+++||..|+.--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 568899999999999999852 268999999999999999999999999999999999999999999999875553
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.08 E-value=4.1e-10 Score=75.66 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=61.7
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 37 RLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 37 ~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
..||.++|.+|++.. +-.++|.|+...|.+-++..+..|+.+|...++|.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~--Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI--GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 479999999999999 55699999999999999999999999999999999999999999999985
No 25
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.9e-10 Score=83.60 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=55.5
Q ss_pred cCchhHHHHHHhhhC---CC---CccccHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 038014 38 LLPIANVGRIMKQIL---PP---NAKISKEAKETMQECVSEFISFVTG-------------------------------- 79 (140)
Q Consensus 38 ~LP~A~V~RI~K~~l---p~---~~rIskdA~~al~~aa~~Fi~~Las-------------------------------- 79 (140)
.||+.++.|++|+.. .. +.|++.+|..+||+++|.|+..|..
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 368888888887753 11 4677777777777777776666554
Q ss_pred ------HHHHHHHhCCCCccCcccHHHHHHhcCCchh
Q 038014 80 ------EASDKCHKEKRKTVNGDDICWALATLGFDNY 110 (140)
Q Consensus 80 ------~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y 110 (140)
+|..+++|+|||||+++||..||+..|-.-|
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4778888999999999999999999886544
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.00 E-value=4.4e-10 Score=84.44 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 43 NVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 43 ~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
+|.||+++... .++.||.+++.+|.+.+..|+..|+.++...|+|+|||||+++||..++++.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 57788887743 3688999999999999999999999999999999999999999999999875
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.92 E-value=2.1e-09 Score=78.15 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=64.1
Q ss_pred HHHHHHhhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHHHHHHH
Q 038014 43 NVGRIMKQILPP-NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRY 121 (140)
Q Consensus 43 ~V~RI~K~~lp~-~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l~~~ 121 (140)
+|.||+++.... ++.+|++++.+|.+.+..|+..|+.++...|+|+|||||+++||..++++. +.|...|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 688999988432 567999999999999999999999999999999999999999999999874 4555555555
Q ss_pred HH
Q 038014 122 RE 123 (140)
Q Consensus 122 re 123 (140)
.+
T Consensus 106 ~~ 107 (113)
T 4dra_A 106 SE 107 (113)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3e-09 Score=74.52 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=58.5
Q ss_pred HHHHHHhhhCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 43 NVGRIMKQILPPN-AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 43 ~V~RI~K~~lp~~-~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
+|.+|+.+.++.. +.+|.+++.+|.+.+..++..|+.++...|+|+|||||+++||..++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999998754 88999999999999999999999999999999999999999999998763
No 29
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.90 E-value=3.2e-09 Score=76.53 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=62.8
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHHHHHHH
Q 038014 43 NVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRY 121 (140)
Q Consensus 43 ~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l~~~ 121 (140)
+|.||+++... .+.++|.+++.+|.+.+..|+..|+.+|...|+|+|||||+.+||..++++. +.|...+..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899988832 2479999999999999999999999999999999999999999999999874 3444444444
Q ss_pred HH
Q 038014 122 RE 123 (140)
Q Consensus 122 re 123 (140)
.+
T Consensus 98 ~~ 99 (107)
T 3b0b_B 98 SD 99 (107)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.86 E-value=9.5e-09 Score=68.57 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=57.1
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 42 ANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 42 A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-.|.||+|.. +--+++.++...|.+.+..++..|+.+|..+|+|+|||||+++||..|++.
T Consensus 5 ~~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3689999998 666999999999999999999999999999999999999999999999874
No 31
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=1e-08 Score=82.57 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=63.8
Q ss_pred ccccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 35 QDRLLPIANVGRIMKQILPP------NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 35 ~d~~LP~A~V~RI~K~~lp~------~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
.-+.||+.++.||+|+..++ +.|++.+|..+||+++|.|+..|...++-+|.|++|.||++.|+..|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 45789999999999998643 6799999999999999999999999999999999999999999999976544
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.64 E-value=8.2e-08 Score=70.49 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=64.1
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.+.|.|+||+.-. ..||+.+|...|..+.|-|...|...|...|.+.+|++|+++||..|+..
T Consensus 19 ragL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 19 RAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 45789999999999999832 34999999999999999999999999999999999999999999999873
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.7e-08 Score=81.35 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=56.5
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 44 VGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 44 V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+.||+|.. +..|||.++.+.+....+.|+..|+.+|..+|+|++||||+++||..||+.+|
T Consensus 167 ~~RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 44778877 66799999999999999999999999999999999999999999999999865
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.62 E-value=1e-07 Score=69.74 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=64.2
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.+.|.|+||+.-- ..||+.+|...|..+.|-|...|...|...|++.+|++|+++||..|+..
T Consensus 18 ragLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 46789999999999999821 45999999999999999999999999999999999999999999999873
No 35
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.62 E-value=1e-07 Score=70.49 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=64.2
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.+.|.|+||+.-. ..||+.+|...|..+.|-|...|...|...|.+.+|++|+++||..|+..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 46789999999999999732 34999999999999999999999999999999999999999999999873
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.60 E-value=9.7e-08 Score=70.83 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=65.0
Q ss_pred cccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 32 ~~~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
..-..+.||.+.|.|+||+.-. ..||+.+|...|..+.|-|+..|...|...|++.+|++|+++||..|+..
T Consensus 19 S~ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 19 SAKAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp TGGGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cccCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3446789999999999999732 34999999999999999999999999999999999999999999999873
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.60 E-value=1.2e-07 Score=70.04 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=64.3
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.++|.|+||+.-.-..||+.+|...|..+.|-|...|...|...|++.+|++|+++||..|+..
T Consensus 23 ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 46789999999999999832235999999999999999999999999999999999999999999999874
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.53 E-value=2.2e-07 Score=70.37 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=64.0
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.+.|.|+||+.-. ..||+.+|...|..++|-|+..|...|...|++.+|++|+++||..|+..
T Consensus 40 ragLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 35788999999999999832 34999999999999999999999999999999999999999999999873
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.39 E-value=6.1e-07 Score=69.94 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=64.3
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.||.+.|.|+||+.-....||+.+|...|..+.+-++..|...|...|++.||++|+++||..|+..
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 45789999999999999822135999999999999999999999999999999999999999999999873
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.30 E-value=1.8e-06 Score=63.52 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=59.2
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 42 ANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 42 A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
..|.|++|++-| +..||.+|...|...+..+...|+.+|...+...+|+||+.+||..|++-+
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 579999999976 689999999999999999999999999999999999999999999999754
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.27 E-value=2.3e-06 Score=63.14 Aligned_cols=67 Identities=30% Similarity=0.362 Sum_probs=60.6
Q ss_pred hhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 41 IANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 41 ~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
...|.|++|++-| +..||.+|...|...+..+...|+.+|...+...+|+||+..||..|++-+==+
T Consensus 39 ~~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 105 (126)
T 1tzy_B 39 SIYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG 105 (126)
T ss_dssp HHHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence 3479999999976 689999999999999999999999999999999999999999999999755333
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.14 E-value=1.3e-05 Score=55.40 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=62.9
Q ss_pred cccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 36 DRLLPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 36 d~~LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
+..+|...|.||++..+. +..||++||..++.+-...|+......|...++..+..+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 458999999999998886 4689999999999999999999999999999999999999999998877543
No 43
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.03 E-value=2.6e-05 Score=52.88 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=62.1
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-|++..+..++++.=| ...+..|+-++|.+.|..||..+++.|...|+|-|-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4799999999999954 67999999999999999999999999999999999999999999999885
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.01 E-value=2.8e-05 Score=53.29 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=62.8
Q ss_pred ccccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 35 QDRLLPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 35 ~d~~LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
.+-.+|...|.||++.... +..||++||..++.+-...|+......|...++..|-..|..+|+-+.+-.|
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 3558999999999999986 4679999999999999999999999999999999999999999998876543
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.94 E-value=2.7e-05 Score=60.58 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 42 ANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 42 A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
..|.|++|++-| +..||.+|...|...+..++..|+.+|...+...+|+||+..||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 468999999976 688999999999999999999999999999999999999999999999743
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.69 E-value=0.00015 Score=50.31 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=60.5
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCccCcccHHHHHHhcC
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEK-RKTVNGDDICWALATLG 106 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~k-RKTI~~eDVl~ALe~lg 106 (140)
.||++.|+|||...+ +..++.+...+|.-.+.+|+-.|...|.++..+.+ +..|.+.||..|.++|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 699999999999996 56899999999999999999999999999998776 44799999999988764
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0028 Score=43.95 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=42.5
Q ss_pred CchhHHHHHHhhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038014 39 LPIANVGRIMKQILPP-NAKISKEAKETMQECVSEFISFVTGEASDKCHK 87 (140)
Q Consensus 39 LP~A~V~RI~K~~lp~-~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~ 87 (140)
||+.+|.||++..+.+ +.||++||..++++-..+|+..-...|.+..+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988753 689999999999999999999888888766544
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.65 E-value=0.46 Score=37.68 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=56.2
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh-cCCchhHH
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECVS----EFISFVTGEASDKCHKEKRKTVNGDDICWALAT-LGFDNYAD 112 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~----~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~-lgf~~y~~ 112 (140)
++...+..|++..+. .+..++.++...|.+.+. ..+..+...|...|...++.+|+.+||..+++. ++...-..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~ 338 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQ 338 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHH
Confidence 455667777775543 246799999999988775 356667778888888899999999999999986 44443333
Q ss_pred HHHHHH
Q 038014 113 QLKRYL 118 (140)
Q Consensus 113 ~l~~~l 118 (140)
.+++..
T Consensus 339 ~~~~~~ 344 (368)
T 3uk6_A 339 YMKEYQ 344 (368)
T ss_dssp HHC---
T ss_pred HHHHhh
Confidence 343333
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=90.46 E-value=0.92 Score=42.56 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=56.6
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 34 EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 34 ~~d~~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-..+.+|.++|.|++|... ..||+..|...+.-..+-....+...|...|+..+++.|++.||..|+..
T Consensus 100 ~~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 100 RNPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cCCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 3578899999999996664 35999999988887766666666667778888899999999999998864
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=90.29 E-value=0.36 Score=37.03 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=56.8
Q ss_pred CcccccCCCCCCCCCCccccccc--cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 038014 15 SYNFTVGASSGTDQDGVIKEQDR--LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 92 (140)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~d~--~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKT 92 (140)
.|||.--.| +.-.-.+++.. .+|.+.+.|+.|.+ .+.-|.++-..-+...++.=+..|.-.|...|+.+||-+
T Consensus 4 ~~~~~~~~~---~~~~~~~~~~Mm~vmg~~kferlFR~a--agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDv 78 (171)
T 1r4v_A 4 KYNFGKVSS---QHKNYSKIETMLRPKGFDKLDHYFRTE--LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDF 78 (171)
T ss_dssp --------------------CCTTSCTTHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSE
T ss_pred ccccccchh---hhccHHHHHHHHhcCChHHHHHHHHHH--hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 466655444 34455566777 88999999999999 457788999999999999999999999999999999999
Q ss_pred cCcccH
Q 038014 93 VNGDDI 98 (140)
Q Consensus 93 I~~eDV 98 (140)
|...|+
T Consensus 79 I~~~DL 84 (171)
T 1r4v_A 79 IALADL 84 (171)
T ss_dssp ECGGGS
T ss_pred eccccC
Confidence 999885
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.88 E-value=3.3 Score=32.46 Aligned_cols=75 Identities=8% Similarity=0.075 Sum_probs=54.9
Q ss_pred CchhHHHHHHhhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 39 LPIANVGRIMKQILPP---NAKISKEAKETMQECV------------SEFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 39 LP~A~V~RI~K~~lp~---~~rIskdA~~al~~aa------------~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
++...+..+++..+.. ...++.++...+.+.+ -.++..+...|...|...++.+|+.+||..++.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446677777665432 3478999999888887 345667777888888888999999999999998
Q ss_pred hcCCchhHHH
Q 038014 104 TLGFDNYADQ 113 (140)
Q Consensus 104 ~lgf~~y~~~ 113 (140)
......+...
T Consensus 273 ~~~~~~~~~~ 282 (389)
T 1fnn_A 273 EVLFGISEEV 282 (389)
T ss_dssp HHSCCCCHHH
T ss_pred HHhhhhHHHH
Confidence 8765544333
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.71 E-value=2.1 Score=33.42 Aligned_cols=66 Identities=8% Similarity=0.056 Sum_probs=51.7
Q ss_pred hhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 41 IANVGRIMKQILP---PNAKISKEAKETMQECVS------EFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 41 ~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~------~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
...+..|++..+. ....++.++...+.+.+. ..+..+...|...|...++.+|+.+||..+++.+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5667777765542 245789999998888776 56667777888888888999999999999998764
No 53
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=84.08 E-value=2.2 Score=31.89 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=53.2
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 98 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDV 98 (140)
-+|.+.+.|+.|.+ .+.-|.|+-..-++..++.=+..|.-.|...|+.+||-+|...|+
T Consensus 2 vm~~~~~e~lFR~a--a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQA--AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHH--HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHH--hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 46788999999999 457788888899999999999999999999999999999999885
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.18 E-value=2.9 Score=34.94 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=49.3
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECV-S---EFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa-~---~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
++...+..+++..+. .+..++.++...+.+.+ . .....|...|...|...|+..|+.+||..++.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 445566666665432 24578999988888766 2 356667778888999999999999999999865
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.73 E-value=5.4 Score=30.97 Aligned_cols=72 Identities=7% Similarity=0.025 Sum_probs=52.4
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCch
Q 038014 39 LPIANVGRIMKQILP---PNAKISKEAKETMQECVS------EFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDN 109 (140)
Q Consensus 39 LP~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~------~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~ 109 (140)
|+...+..+++..+. ....++.++...+.+.+. ..+..+...|...+...++.+|+.+||..|++++....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445667777765432 135789999888887765 34555777888888888999999999999998765443
Q ss_pred h
Q 038014 110 Y 110 (140)
Q Consensus 110 y 110 (140)
+
T Consensus 277 ~ 277 (386)
T 2qby_A 277 V 277 (386)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=80.26 E-value=1.5 Score=27.91 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
|..|..+|...|...++..|+.+|+..||++.
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66677778888888899999999999999863
No 57
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=73.07 E-value=9 Score=26.47 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+++..+..+|.. |...|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 567777766665 77789999999999999999985543
No 58
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=72.68 E-value=3.5 Score=26.58 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 79 GEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 79 s~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
.+|...|.+.++..|+.+|+..|+++.-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 3466667777889999999999999864
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.29 E-value=14 Score=28.49 Aligned_cols=51 Identities=10% Similarity=-0.081 Sum_probs=40.9
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 55 NAKISKEAKETMQECVSE-------FISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 55 ~~rIskdA~~al~~aa~~-------Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
.+.++.++...|.+.+.- -+..+...|...|...+|.+|+.+||..|+...
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999998877543 455666777888888999999999999998753
No 60
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=70.90 E-value=7.1 Score=27.15 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+++..+..+|.. |...|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 577777777765 77788999999999999999985443
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.70 E-value=20 Score=27.86 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=36.3
Q ss_pred CccccHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 55 NAKISKEAKETMQECVSE-----------------------FISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 55 ~~rIskdA~~al~~aa~~-----------------------Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
++.++.++...+.+.+.. -...+...|...|.-.+|..|+.+||..++..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 456888888777665432 22344556677788899999999999998875
No 62
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.69 E-value=20 Score=31.08 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 56 AKISKEAKETMQECVS-------------EFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 56 ~rIskdA~~al~~aa~-------------~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
..++.++...|.+.+. .-+..|...|...|...++..|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4789999998888553 445667778889999999999999999999964
No 63
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=70.41 E-value=3.7 Score=26.95 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
|..|..+|.-.|.+.++..|+.+|+..|+++.-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 44455566677777788999999999999976443
No 64
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=69.83 E-value=3.6 Score=26.35 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
|..|..+|...|.+.++..|+.+|+..|+++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 344555677788888899999999999998753
No 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.59 E-value=9.6 Score=29.86 Aligned_cols=66 Identities=6% Similarity=-0.022 Sum_probs=46.7
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 39 LPIANVGRIMKQILP---PNAKISKEAKETMQECVS------EFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 39 LP~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~------~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
++...+..|++..+. ....++.++...+.+.+. ..+..+...|...|. +..+|+.+||..+++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777776432 245789999888887765 134455556666665 678999999999998864
No 66
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=68.09 E-value=5.1 Score=26.35 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
|..|..+|...|.+.++..|+.+|+..|+++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455667777888889999999999999763
No 67
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=67.00 E-value=12 Score=26.26 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
+++..+..+|.. |...|...+...|.++|++.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 567777776665 7778999999999999999998654
No 68
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=66.66 E-value=12 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+++..+..+|.. |...|...+...|.++|++.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 678888877766 77779999999999999999986544
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.66 E-value=19 Score=28.43 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred hHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 42 ANVGRIMKQILP-PNAKISKEAKETMQECVS---EFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 42 A~V~RI~K~~lp-~~~rIskdA~~al~~aa~---~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
..+..|++.... -++.++.++...|.+.+. ..+..+...+.+.|...++..|+.++|..+++.++++
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 355556554321 135688888888766432 3445555667777777788899999999999987654
No 70
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=61.04 E-value=16 Score=26.18 Aligned_cols=82 Identities=9% Similarity=0.000 Sum_probs=40.9
Q ss_pred CCCCCCccccccc--cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHH
Q 038014 25 GTDQDGVIKEQDR--LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAL 102 (140)
Q Consensus 25 ~~~~~~~~~~~d~--~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~AL 102 (140)
+|+++.+...... .|....+.|+-+=. ...++.+.+...|....+.--..-...+.......+.-+|+.+++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l 83 (197)
T 3pm8_A 6 HHSSGRENLYFQGHVELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGL 83 (197)
T ss_dssp -----------CCSCCCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred cccchHhhhccCCCCCCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 4445544444433 34456666665443 3345666665555443322211112334555567778899999999999
Q ss_pred HhcCCc
Q 038014 103 ATLGFD 108 (140)
Q Consensus 103 e~lgf~ 108 (140)
..+|+.
T Consensus 84 ~~~g~~ 89 (197)
T 3pm8_A 84 KKIGYQ 89 (197)
T ss_dssp HHHC--
T ss_pred HHhCCC
Confidence 999875
No 71
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=57.80 E-value=33 Score=23.84 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 56 AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
..+|..+..+|.+ |...|...|...|+.+|++.||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4678888777776 66678889999999999999986544
No 72
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=57.32 E-value=7.8 Score=26.70 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCccCcccHHHHHH
Q 038014 80 EASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 80 ~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
.|...|...|...|.++|++.||=
T Consensus 12 ~A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 12 MAFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp HHHHHHHHHTBSEECHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 377788888999999999999983
No 73
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=55.49 E-value=37 Score=23.54 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=31.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 55 NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 55 ~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
...+|..+..+|.+ |...|...|...|+.+|++.||-+-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 34677777777766 66778889999999999999996654
No 74
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=55.03 E-value=17 Score=25.31 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=39.8
Q ss_pred CchhHHHHHHhhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 39 LPIANVGRIMKQILPP-NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 39 LP~A~V~RI~K~~lp~-~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
++...+..+++..+.. +..++.++...|.+.+.--+..+.......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666666655421 3568888888887766544444444444444333 6899999998875
No 75
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.24 E-value=32 Score=24.51 Aligned_cols=64 Identities=3% Similarity=-0.061 Sum_probs=38.9
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCccCcccHHHHHH
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECVS---EFISFVTGEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~---~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
++...+.++++..+. .+..++.++...|.+.+. .-+..+...+...+...+ ++|+.+||..+|+
T Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 174 MMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 334455556655432 245788998888877654 223333344555554444 5699999998875
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=51.96 E-value=13 Score=28.05 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
-|..|...|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677888888999999999999999999764
No 77
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=50.44 E-value=11 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=19.5
Q ss_pred cCcccHHHHHHhcCCchhHHHHH
Q 038014 93 VNGDDICWALATLGFDNYADQLK 115 (140)
Q Consensus 93 I~~eDVl~ALe~lgf~~y~~~l~ 115 (140)
=+++||..-|+.+||++|.+...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36789999999999999988654
No 78
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=48.55 E-value=47 Score=23.33 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=48.0
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECV-SEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKR 116 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa-~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~ 116 (140)
.+|....+++||.- .+|.--.+.|..-- ...-..+-..-...-...|++--+.++++.||+++++..-.+.+++
T Consensus 22 ~v~~~~WK~~aRkL-----GLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~ 96 (112)
T 1ich_A 22 NVPPLRWKEFVKRL-----GLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGCLEDIEE 96 (112)
T ss_dssp HSCSTTHHHHHHHH-----TCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHc-----CCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHH
Confidence 35666666666665 24444444443211 0111122223344567788888889999999999999988888877
Q ss_pred HHH
Q 038014 117 YLH 119 (140)
Q Consensus 117 ~l~ 119 (140)
.+.
T Consensus 97 ~l~ 99 (112)
T 1ich_A 97 ALC 99 (112)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
No 79
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.28 E-value=18 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
-+..+...|...|...++.+|+.+|+..|+++.-
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 3555667788888888999999999999998753
No 80
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=47.12 E-value=12 Score=23.94 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=40.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCccCcccHHHHHHhcC
Q 038014 55 NAKISKEAKETMQECVSEFISFVTGEASD-KCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 55 ~~rIskdA~~al~~aa~~Fi~~Las~A~~-~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
++..+.||...|.+ +--|+.--+....+ .|+..|...||.+.+..|-+.+|
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 46788999988888 67788776665555 89999999999999988876553
No 81
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=45.56 E-value=14 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.5
Q ss_pred ccCcccHHHHHHhcCCchhHHHHHH
Q 038014 92 TVNGDDICWALATLGFDNYADQLKR 116 (140)
Q Consensus 92 TI~~eDVl~ALe~lgf~~y~~~l~~ 116 (140)
.=+++||..-|+.+||+.|.+...+
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~~ 33 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFTR 33 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3478899999999999999876543
No 82
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=45.47 E-value=24 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcC
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 106 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lg 106 (140)
+++..+..+|.. |...|...+...|.++|++.||=+-+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 456666666655 77778999999999999999986543
No 83
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.19 E-value=50 Score=27.65 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=45.3
Q ss_pred CchhHHHHHHhhhCC--------CCccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhC--CCCccCcccHHHHHHhc
Q 038014 39 LPIANVGRIMKQILP--------PNAKISKEAKETMQECVSEF---ISFVTGEASDKCHKE--KRKTVNGDDICWALATL 105 (140)
Q Consensus 39 LP~A~V~RI~K~~lp--------~~~rIskdA~~al~~aa~~F---i~~Las~A~~~a~~~--kRKTI~~eDVl~ALe~l 105 (140)
++...+..+++..+. ....|+.++...|.+.+.-- +..+...+...+... ++.+|+.+||..++...
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 566777777776653 23579999999888865322 223333444454423 66789999999999865
Q ss_pred C
Q 038014 106 G 106 (140)
Q Consensus 106 g 106 (140)
.
T Consensus 245 ~ 245 (447)
T 3pvs_A 245 S 245 (447)
T ss_dssp C
T ss_pred h
Confidence 3
No 84
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=42.95 E-value=61 Score=21.96 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 56 AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
..+|..+..+|.. |...|...|...|+.+|++.||-+-
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 3567776666555 6777888899999999999999653
No 85
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=41.13 E-value=12 Score=23.49 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.5
Q ss_pred cCcccHHHHHHhcCCchhHHHH
Q 038014 93 VNGDDICWALATLGFDNYADQL 114 (140)
Q Consensus 93 I~~eDVl~ALe~lgf~~y~~~l 114 (140)
=+++||..-|+.+||++|.+..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4688999999999999988754
No 86
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.46 E-value=24 Score=30.28 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=41.1
Q ss_pred cCchhHH-HHHHhhhCCCCccccHHH-HHHHHHHH----HHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 38 LLPIANV-GRIMKQILPPNAKISKEA-KETMQECV----SEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 38 ~LP~A~V-~RI~K~~lp~~~rIskdA-~~al~~aa----~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
.+|-..- ..|++-.+. .+.++.|. ...|.+.+ -.-|..|..+|.-.|.+.+|..|+.+|+..|+++
T Consensus 351 ~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 351 ENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4554322 344444432 33444432 33444433 2346777788888899999999999999999875
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.20 E-value=81 Score=24.58 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=49.4
Q ss_pred cCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 38 LLPIANVGRIMKQILP---PNAKISKEAKETMQECVS---------EFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp---~~~rIskdA~~al~~aa~---------~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
.|+...+..+++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++...
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3455667777754321 123588888888887776 3677777778888888889999999999888765
Q ss_pred C
Q 038014 106 G 106 (140)
Q Consensus 106 g 106 (140)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 3
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=39.81 E-value=35 Score=23.78 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=39.0
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHH
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAL 102 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~AL 102 (140)
++...+..+++..+. .+..++.++...|.+.+.--...+-......+ ..++.+|+.+||..++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 445666777765542 24578888888887776544444433333322 3345689999998775
No 89
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=39.75 E-value=15 Score=23.41 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCccCcccHHHHHHhc
Q 038014 56 AKISKEAKETMQECVSEFISFVTGEASD-KCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~Fi~~Las~A~~-~a~~~kRKTI~~eDVl~ALe~l 105 (140)
+..+.||...|.+ +--|+.--+....+ .|+..|...||.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 4577888888877 66677666665544 8999999999999988886543
No 90
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.16 E-value=26 Score=29.64 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 72 EFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 72 ~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
.-|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 356 ADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 346677778888898999999999999999975
No 91
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=38.99 E-value=37 Score=21.00 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=26.2
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 73 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~F 73 (140)
.++.++|.|++... +....|+.+.+.-|.+++.++
T Consensus 11 GVS~sTVSrvLng~-~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGK-AKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTC-TTTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 57889999998865 112379999998888877654
No 92
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.93 E-value=26 Score=29.73 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-|..|..+|.-.|.+.++..|+.+|+..|+++
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36667778888888999999999999999975
No 93
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.48 E-value=56 Score=27.26 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHH
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQL 114 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l 114 (140)
+++..+..+|.. |...|...+...|.++|++.+|=.-+=+.....|
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 577777777765 7777999999999999999999766544333333
No 94
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.26 E-value=23 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
-|..|..+|.-.|.+.++..|+.+|+..|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 466777788888888999999999999999864
No 95
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=37.21 E-value=16 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
-|..|...|...|...++.+|+.+|+..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 455666677777777888999999999998764
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=36.92 E-value=44 Score=24.48 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=31.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccCcccHHHHHHhc
Q 038014 56 AKISKEAKETMQECVSEFISFVTGEASDKCH-KEKRKTVNGDDICWALATL 105 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~Fi~~Las~A~~~a~-~~kRKTI~~eDVl~ALe~l 105 (140)
..+|..+..+|++ |...|. .-|...|+.+|++.||-+-
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4688888877776 777788 8999999999999998543
No 97
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.86 E-value=25 Score=30.41 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
-|..|..+|.-.|.+.+|+.|+.+|+..|+++.
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 366777788888888999999999999999863
No 98
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.79 E-value=22 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 73 FISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 73 Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
-|..|..+|.-.|.+.+|..|+.+|+..|+++
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 36777788888899999999999999999875
No 99
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=33.99 E-value=25 Score=23.27 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.4
Q ss_pred ccCcccHHHHHHhc-CCchhHHHHHH
Q 038014 92 TVNGDDICWALATL-GFDNYADQLKR 116 (140)
Q Consensus 92 TI~~eDVl~ALe~l-gf~~y~~~l~~ 116 (140)
.=+.+||..-|+.+ ||++|.+..++
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 35789999999999 99999876554
No 100
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.35 E-value=1.1e+02 Score=26.77 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=43.6
Q ss_pred cCchhHHHHHHhhhC--CCCccccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhCCCCccC
Q 038014 38 LLPIANVGRIMKQIL--PPNAKISKEAKETMQECVSEF---------------------ISFVTGEASDKCHKEKRKTVN 94 (140)
Q Consensus 38 ~LP~A~V~RI~K~~l--p~~~rIskdA~~al~~aa~~F---------------------i~~Las~A~~~a~~~kRKTI~ 94 (140)
.++...+++.+..+= .-...++.++...|.+....- +..|...|-..|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 456666666655441 013578888887776543221 223555667788999999999
Q ss_pred cccHHHHHHh
Q 038014 95 GDDICWALAT 104 (140)
Q Consensus 95 ~eDVl~ALe~ 104 (140)
++||..|++-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 101
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=32.89 E-value=55 Score=21.77 Aligned_cols=72 Identities=8% Similarity=0.060 Sum_probs=42.7
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQEC-----VSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAD 112 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~a-----a~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~ 112 (140)
.+|...++++++.- .+|.--.+.|... .+..+. .-.......| +.=+.++++.+|+++++..-++
T Consensus 9 ~~~~~~wK~~~R~L-----Glse~~Id~I~~~~~~d~~Eq~~q----mL~~W~~~~g-~~a~~~~Li~~Lr~~~l~~~Ad 78 (86)
T 3oq9_A 9 DMTIQEAKKFAREN-----NIKEGKIDEIMHDSIQDTAEQKVQ----LLLCWYQSHG-KSDAYQDLIKGLKKAECRRTLD 78 (86)
T ss_dssp HSCHHHHHHHHHTT-----TSCHHHHHHHHHTCTTCCTTHHHH----HHHHHHHHSC-SSSHHHHHHHHHHHTTCSSHHH
T ss_pred HcCHHHHHHHHHHc-----CCCHhHHHHHHHhCCCChHHHHHH----HHHHHHHHhC-cchHHHHHHHHHHHccchhHHH
Confidence 46777778888776 1333333333211 111111 1122334444 4447899999999999999998
Q ss_pred HHHHHHH
Q 038014 113 QLKRYLH 119 (140)
Q Consensus 113 ~l~~~l~ 119 (140)
.+++.+.
T Consensus 79 ~I~~~l~ 85 (86)
T 3oq9_A 79 KFQDMVQ 85 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887764
No 102
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=32.57 E-value=52 Score=24.96 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=45.4
Q ss_pred CchhHHHHHHhhhCCC-CccccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCC
Q 038014 39 LPIANVGRIMKQILPP-NAKISKEAKETMQECV---SEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 107 (140)
Q Consensus 39 LP~A~V~RI~K~~lp~-~~rIskdA~~al~~aa---~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf 107 (140)
+|...+..+++..+.. +..++.++...|.+.+ ...+..+...+...|...+...|+.+|+..++..++.
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 4555666666665422 4578999988887764 2333444444555555567788999999999887654
No 103
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.27 E-value=1.2e+02 Score=20.77 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 56 AKISKEAKETMQECVS---EFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 56 ~rIskdA~~al~~aa~---~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
-++.+.+...+..... .-+.. ...+.......+--+|+.+++..+|..+|+.
T Consensus 17 ~~l~~~~l~~~~~~l~~~~~~~~~-l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 17 SNIRNIIINIMAHELSVINNHIKY-INELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 4566666555554432 11222 2345556667778899999999999999987
No 104
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=32.20 E-value=14 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=18.9
Q ss_pred cCcccHHHHHHhcCCchhHHHH
Q 038014 93 VNGDDICWALATLGFDNYADQL 114 (140)
Q Consensus 93 I~~eDVl~ALe~lgf~~y~~~l 114 (140)
-+++||..-|+.+||++|++..
T Consensus 20 Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 20 WSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp CCTTHHHHHHHHTTCTTTTTTT
T ss_pred CCHHHHHHHHHHcCCHHHHHHH
Confidence 4789999999999999988654
No 105
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=31.52 E-value=1.1e+02 Score=19.97 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHHHH
Q 038014 80 EASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYL 118 (140)
Q Consensus 80 ~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l 118 (140)
.+.......+.-.|+.+++..+|..+|..--...+...+
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455666677778899999999999998654334444433
No 106
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.49 E-value=1.1e+02 Score=21.04 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHHHH
Q 038014 53 PPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYL 118 (140)
Q Consensus 53 p~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l 118 (140)
|...++|++-+..|.+ |....-..|-=+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4456777777665554 44555667777899999999999998875555544443
No 107
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=31.29 E-value=71 Score=17.77 Aligned_cols=27 Identities=15% Similarity=0.040 Sum_probs=17.7
Q ss_pred HHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 82 SDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 82 ~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
.......+.-.|+.+++..+|..+|..
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~ 33 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPY 33 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTT
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 334445566677777777777777754
No 108
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=31.05 E-value=97 Score=19.25 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 80 EASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 80 ~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
.+.......+.-.|+.+++..+|..+|+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 35555667777789999999999888765
No 109
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=30.98 E-value=30 Score=25.62 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHH
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWAL 102 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~AL 102 (140)
+..+...|...|...++.+|+.+|+..|+
T Consensus 225 l~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 225 LENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44555667777788888999999999886
No 110
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=30.57 E-value=13 Score=32.58 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 57 KISKEAKETMQECVSE------------------FISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 57 rIskdA~~al~~aa~~------------------Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
.++.++...|.+.... -+..|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5666777666665321 13455666777888999999999999999864
No 111
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=30.24 E-value=1.2e+02 Score=23.12 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=46.7
Q ss_pred hhHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 41 IANVGRIMKQILP-PNAKISKEAKETMQECVS---EFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 41 ~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~---~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
...+..+++..+. .+..++.++...|.+.+. ..+..+...+...|...++.+|+.+|+..++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4455555555432 145689999988887432 2344455566677788888999999999999876654
No 112
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.75 E-value=35 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCCccCcccHHHHH
Q 038014 74 ISFVTGEASDKCHKEKRKTVNGDDICWAL 102 (140)
Q Consensus 74 i~~Las~A~~~a~~~kRKTI~~eDVl~AL 102 (140)
|..+...|...|...++.+|+.+|+..|+
T Consensus 249 l~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 249 LENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44455667777778888999999999886
No 113
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.43 E-value=94 Score=27.38 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 57 KISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 57 rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
+++..+..+|.. |...|...+...|+++|++.||=.-+=+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~~~ 44 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEG 44 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCc
Confidence 577777777765 7777999999999999999998765433
No 114
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.41 E-value=81 Score=22.07 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHhCCCCccCcccHHHHHHhcCCchhHHHHHHHHHHH
Q 038014 84 KCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRY 121 (140)
Q Consensus 84 ~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l~~~ 121 (140)
...+.|+. -+.+.++.||+++|..+.++.|+..++.-
T Consensus 56 W~~r~G~~-ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 56 WKNTEKEN-ATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHHHCTTT-CCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-chHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44455543 47889999999999999999999988743
No 115
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=27.79 E-value=58 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc
Q 038014 56 AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL 105 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l 105 (140)
..+|..+..+|.. |...|...|...|+.+|++.||=+-
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhC
Confidence 3566666655544 6777788899999999999998643
No 116
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.73 E-value=1.5e+02 Score=22.18 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=36.5
Q ss_pred ccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC------------CCccCcccHHHHHHhcCCchhHHH
Q 038014 56 AKISKEAKETMQECVSE----FISFVTGEASDKCHKEK------------RKTVNGDDICWALATLGFDNYADQ 113 (140)
Q Consensus 56 ~rIskdA~~al~~aa~~----Fi~~Las~A~~~a~~~k------------RKTI~~eDVl~ALe~lgf~~y~~~ 113 (140)
..++.++...|.+.+.- -+..|...|...+.+.. ...|+.+|+..|++...-.-....
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~ 280 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQS 280 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHH
Confidence 34777777777765543 23345555555555443 367999999999998765433333
No 117
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=27.47 E-value=91 Score=24.19 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=35.1
Q ss_pred cCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHH
Q 038014 38 LLPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAL 102 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~AL 102 (140)
.++...+.+.++..+. .+..|+.++...|.+.+.-=+..+..+--..+--.+.++|+.+||...+
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~ 206 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAV 206 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3555566655555432 3578999999988876553222222222222222234467777665443
No 118
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=27.40 E-value=60 Score=22.88 Aligned_cols=72 Identities=7% Similarity=0.149 Sum_probs=44.5
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQEC-----VSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYAD 112 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~a-----a~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~ 112 (140)
.+|...+++++|.- .+|.--.+.|... .+..+.. -.......| ++=+..+++.+|+.+++..-++
T Consensus 17 ~m~~~~wK~laR~L-----Glse~~Id~I~~d~~~d~~Eq~~ql----Lr~W~~~~G-~~aa~~~Li~aLr~~~l~~~Ad 86 (115)
T 3ezq_A 17 VMTLSQVKGFVRKN-----GVNEAKIDEIKNDNVQDTAEQKVQL----LRNWHQLHG-KKEAYDTLIKDLKKANLCTLAE 86 (115)
T ss_dssp TSCHHHHHHHHHHT-----TCCHHHHHHHHHHCSSCHHHHHHHH----HHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHc-----CCCHhhHHHHHHcCCCChHHHHHHH----HHHHHHHhC-cccHHHHHHHHHHHccchhHHH
Confidence 57888888999887 2344444433321 1221111 122333444 3347899999999999998888
Q ss_pred HHHHHHH
Q 038014 113 QLKRYLH 119 (140)
Q Consensus 113 ~l~~~l~ 119 (140)
.++..+.
T Consensus 87 ~Iq~~l~ 93 (115)
T 3ezq_A 87 KIQTIIL 93 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877665
No 119
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=27.35 E-value=55 Score=18.35 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=9.7
Q ss_pred HHHHhCCCCccCcccHHHHHH
Q 038014 83 DKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 83 ~~a~~~kRKTI~~eDVl~ALe 103 (140)
..+...+.-.|+.++++..+.
T Consensus 43 ~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 43 KSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp HHHCTTCSSSCCHHHHHHHHT
T ss_pred HHHCCCCCCCCCHHHHHHHHH
Confidence 333344444555555554443
No 120
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=25.93 E-value=1.5e+02 Score=19.62 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.7
Q ss_pred ccccHH
Q 038014 56 AKISKE 61 (140)
Q Consensus 56 ~rIskd 61 (140)
..|+.+
T Consensus 43 G~i~~~ 48 (169)
T 3qrx_A 43 GTIDAK 48 (169)
T ss_dssp SEECHH
T ss_pred CcCcHH
Confidence 445543
No 121
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=25.53 E-value=3.3e+02 Score=23.58 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=32.2
Q ss_pred HHhCCCCccCcccHHHHHHhcCCc-hhHHHHHHH------HHHHHHHHHHHhhhhccC
Q 038014 85 CHKEKRKTVNGDDICWALATLGFD-NYADQLKRY------LHRYRELEGERANQNKAG 135 (140)
Q Consensus 85 a~~~kRKTI~~eDVl~ALe~lgf~-~y~~~l~~~------l~~~re~~~~kk~q~k~~ 135 (140)
++..+.++|+.+++.+.-+.-||+ +....+-+. .+.|.+.+++.|++.++.
T Consensus 371 ~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~ 428 (465)
T 1yfs_A 371 ALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKH 428 (465)
T ss_dssp HHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC
T ss_pred HHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhh
Confidence 344567789999999999999999 333322211 345666666555444433
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.47 E-value=57 Score=24.95 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=40.2
Q ss_pred cCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCC-CccCcccHHHHHHhcC
Q 038014 38 LLPIANVGRIMKQILP-PNAKISKEAKETMQECVS----EFISFVTGEASDKCHKEKR-KTVNGDDICWALATLG 106 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~----~Fi~~Las~A~~~a~~~kR-KTI~~eDVl~ALe~lg 106 (140)
.++...+..+++..+. .++.++.++...|.+.+. ..+..| ..+...+...++ +.|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l-~~~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL-QSASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH-HHTHHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHHHhcCCCccCccccHHHHHHHhCCCC
Confidence 3455566666665432 356799999888877643 222222 223333443333 3899999998887544
No 123
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.24 E-value=1.1e+02 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 81 ASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 81 A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
+.......+.-.|+.+++..+|..+|..
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~ 61 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEK 61 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCC
Confidence 3444566777789999999999988865
No 124
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=24.89 E-value=59 Score=22.12 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCccCcccHHHHHH
Q 038014 79 GEASDKCHKEKRKTVNGDDICWALA 103 (140)
Q Consensus 79 s~A~~~a~~~kRKTI~~eDVl~ALe 103 (140)
..|...+...+...|+.+|++.||-
T Consensus 92 ~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 92 NLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHH
Confidence 3467777777889999999999986
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=24.85 E-value=2.6e+02 Score=22.13 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=42.3
Q ss_pred hHHHHHHhhhCCC-CccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC------------CCCccCcccHHHHHHh
Q 038014 42 ANVGRIMKQILPP-NAKISKEAKETMQECVSE----FISFVTGEASDKCHKE------------KRKTVNGDDICWALAT 104 (140)
Q Consensus 42 A~V~RI~K~~lp~-~~rIskdA~~al~~aa~~----Fi~~Las~A~~~a~~~------------kRKTI~~eDVl~ALe~ 104 (140)
.....|++..+.. +..++.+....|.+.+.- -|..|...|...+.+. ....|+.+|+..+++.
T Consensus 285 ~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 3444555554432 356888888777766543 4445556665555544 4568999999999987
Q ss_pred cCC
Q 038014 105 LGF 107 (140)
Q Consensus 105 lgf 107 (140)
..-
T Consensus 365 ~~~ 367 (389)
T 3vfd_A 365 IKR 367 (389)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 126
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=23.13 E-value=3.5e+02 Score=22.99 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=33.3
Q ss_pred CccccHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCCccCcccHH
Q 038014 55 NAKISKEAKETMQECVSE-------------FISFVTGEASDKCHKEKRKTVNGDDIC 99 (140)
Q Consensus 55 ~~rIskdA~~al~~aa~~-------------Fi~~Las~A~~~a~~~kRKTI~~eDVl 99 (140)
.+.++.+..+.+.+.+.. -...+...|...|.-.||..|+++||.
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 466888887777766532 233455667778899999999999998
No 127
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=23.07 E-value=34 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=20.6
Q ss_pred HHhCCCCc--------cCcccHHHHHHhcCCchhH
Q 038014 85 CHKEKRKT--------VNGDDICWALATLGFDNYA 111 (140)
Q Consensus 85 a~~~kRKT--------I~~eDVl~ALe~lgf~~y~ 111 (140)
+..+||+. .+.++|..|++.|||.-.+
T Consensus 13 tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~ 47 (87)
T 1lng_A 13 SRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKI 47 (87)
T ss_dssp CTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEE
T ss_pred ChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEE
Confidence 34566664 6789999999999998543
No 128
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=22.97 E-value=1.4e+02 Score=19.48 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038014 44 VGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKC 85 (140)
Q Consensus 44 V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a 85 (140)
|..|++.. +-.-++.|+...++-|+++-+..|...-...+
T Consensus 12 i~~I~~k~--gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a 51 (75)
T 1h3o_A 12 ILEIGKKH--GITELHPDVVSYVSHATQQRLQNLVEKISETA 51 (75)
T ss_dssp HHHHHHTT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhc--CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33455554 33469999999999999998877766544433
No 129
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.93 E-value=40 Score=22.13 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred ccCcccHHHHHHhcCC--chhHHHHH
Q 038014 92 TVNGDDICWALATLGF--DNYADQLK 115 (140)
Q Consensus 92 TI~~eDVl~ALe~lgf--~~y~~~l~ 115 (140)
.=+++||..-|+.+|| +.|.+...
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F~ 44 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRFL 44 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3578999999999999 88876553
No 130
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=22.04 E-value=1.3e+02 Score=17.58 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 038014 44 VGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASD 83 (140)
Q Consensus 44 V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~ 83 (140)
|+.+|-.- ++...-..|++.+|-+.+..||..+...|.+
T Consensus 6 i~~mMy~f-GD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGF-GDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHT-TSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555444 4445678899999999999999999998865
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.03 E-value=91 Score=23.96 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=36.1
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
++...+..+++..+. .+..++.++...|.+.+.--+..+.......+.. +..+|+.+||..++..
T Consensus 178 l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGT 243 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCC
Confidence 555667777765442 1467888888887776543333322222222221 2456888887766543
No 132
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.97 E-value=1.2e+02 Score=17.34 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=15.8
Q ss_pred HHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 83 DKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 83 ~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
......+.-.|+.+++..+|..+|+.
T Consensus 14 ~~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 14 DLFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HHhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 33344555567777777777766654
No 133
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.93 E-value=1.3e+02 Score=18.02 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 81 ASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 81 A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
+.......+.-.|+.+++..+|..+|+.
T Consensus 25 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 52 (90)
T 1avs_A 25 AFDMFDADGGGDISTKELGTVMRMLGQN 52 (90)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3344455666678888888888887765
No 134
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=36 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=12.9
Q ss_pred CcccHHHHHHhcCCch--hHHHH
Q 038014 94 NGDDICWALATLGFDN--YADQL 114 (140)
Q Consensus 94 ~~eDVl~ALe~lgf~~--y~~~l 114 (140)
+.+||..-|+.+||++ |.+..
T Consensus 31 s~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHHHHHHH
Confidence 4566666666677766 55543
No 135
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Probab=21.75 E-value=4.1e+02 Score=23.29 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCCcccccCCCCCCCCCCccccccccCchhHHHHHHhhhCCCCc-cccHHHHHHHHHHHHHHHHHHHHH-----------
Q 038014 13 DNSYNFTVGASSGTDQDGVIKEQDRLLPIANVGRIMKQILPPNA-KISKEAKETMQECVSEFISFVTGE----------- 80 (140)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~d~~LP~A~V~RI~K~~lp~~~-rIskdA~~al~~aa~~Fi~~Las~----------- 80 (140)
--||-=+|++| +...+|+. -.-.++|=++-. ++. .++.|-+.++.+-+..-|.-+..+
T Consensus 367 ~pnYDNmFagS-------N~daeD~D-Dy~vlQRDl~vd--gGl~pV~ee~vi~vRnkAarAiQavF~~LGlp~itDeeV 436 (554)
T 1eex_A 367 VPNYDNMFAGS-------NEDAEDFD-DYNVIQRDLKVD--GGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEV 436 (554)
T ss_dssp SCGGGCTTSCC-------SSCGGGHH-HHHHHHHHHTCC--CSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHH
T ss_pred CCCccccccCC-------CCChhhhh-HHHHHHHHhccC--CCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 34555556655 34444432 122344544443 344 477777777776666656555542
Q ss_pred -HHHHHHhCC------------------CCccCcccHHHHHHhcCCchhHHHHHHHHH
Q 038014 81 -ASDKCHKEK------------------RKTVNGDDICWALATLGFDNYADQLKRYLH 119 (140)
Q Consensus 81 -A~~~a~~~k------------------RKTI~~eDVl~ALe~lgf~~y~~~l~~~l~ 119 (140)
|..+|...+ .+-|+.-||++||.+-||.+..+.+-..+.
T Consensus 437 EAatyA~gS~Dmp~r~~~~dlkaa~~~~~rgiTg~DiVkaL~~~Gf~dvAe~il~~~k 494 (554)
T 1eex_A 437 EAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQK 494 (554)
T ss_dssp HHHHHCSSGGGSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccCCccchHHHHHHHHHHHHcCCchhHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444443222 245899999999999999987776655443
No 136
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=21.19 E-value=1.6e+02 Score=19.70 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=26.2
Q ss_pred HhCCCCccCcccHHHHHHhcCCchhHHHHHHHHH
Q 038014 86 HKEKRKTVNGDDICWALATLGFDNYADQLKRYLH 119 (140)
Q Consensus 86 ~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~l~ 119 (140)
.+.--|||.++||-.||..-+|-.+.+++.....
T Consensus 18 ~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~ 51 (85)
T 2ns0_A 18 ARADSASICPSDVARAVAPDDWRPLMEPVREAAG 51 (85)
T ss_dssp HSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 3444599999999999987778888777776554
No 137
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=21.03 E-value=1.4e+02 Score=18.49 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=44.7
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhc---CCchhHHHH
Q 038014 38 LLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATL---GFDNYADQL 114 (140)
Q Consensus 38 ~LP~A~V~RI~K~~lp~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~l---gf~~y~~~l 114 (140)
.++...|.++++..= ++..|+-+-...+......- ..-...+.......+.-.|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLSSKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcCCCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 466778888888762 34455543322221100000 0112345666677788899999999999998 554333444
Q ss_pred HHHH
Q 038014 115 KRYL 118 (140)
Q Consensus 115 ~~~l 118 (140)
+..+
T Consensus 84 ~~~~ 87 (109)
T 3fs7_A 84 KAFL 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 138
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=20.68 E-value=1e+02 Score=18.26 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=21.8
Q ss_pred HHHHHhCCCCccCcccHHHHHHhcCCchhHHHHHH
Q 038014 82 SDKCHKEKRKTVNGDDICWALATLGFDNYADQLKR 116 (140)
Q Consensus 82 ~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~ 116 (140)
.......+.-.|+.+++..+|..+|..-=...+..
T Consensus 29 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 63 (87)
T 1s6j_A 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKD 63 (87)
T ss_dssp HHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 33445566667888888888888876533333333
No 139
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.63 E-value=1.4e+02 Score=17.51 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCccCcccHHHHHHhcCCc
Q 038014 81 ASDKCHKEKRKTVNGDDICWALATLGFD 108 (140)
Q Consensus 81 A~~~a~~~kRKTI~~eDVl~ALe~lgf~ 108 (140)
+.......+.-.|+.+++..+|..+|+.
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3344455666678888888888877765
No 140
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=89 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.0
Q ss_pred ccCcccHHHHHHhcCCchhHHHHHH
Q 038014 92 TVNGDDICWALATLGFDNYADQLKR 116 (140)
Q Consensus 92 TI~~eDVl~ALe~lgf~~y~~~l~~ 116 (140)
.....+|..-|+.+|+++|.+....
T Consensus 9 ~~~~~~V~~WL~~lgL~~Y~~~F~~ 33 (80)
T 2eam_A 9 RCPVQTVGQWLESIGLPQYENHLMA 33 (80)
T ss_dssp CCCCCCHHHHHHHHTCGGGHHHHHH
T ss_pred CCChhHHHHHHHHCCCHHHHHHHHH
Confidence 3457799999999999999876543
No 141
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.51 E-value=1.6e+02 Score=19.45 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=13.1
Q ss_pred HhCCCCccCcccHHHHHHhcCC
Q 038014 86 HKEKRKTVNGDDICWALATLGF 107 (140)
Q Consensus 86 ~~~kRKTI~~eDVl~ALe~lgf 107 (140)
...+--+|+.+++..+|..+|+
T Consensus 35 D~d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 35 DQNADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCCCCcCCHHHHHHHHHHhCC
Confidence 3444555666666666666665
No 142
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.51 E-value=1.3e+02 Score=18.10 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=7.4
Q ss_pred CCccCcccHHHHHHhcC
Q 038014 90 RKTVNGDDICWALATLG 106 (140)
Q Consensus 90 RKTI~~eDVl~ALe~lg 106 (140)
.-.|+.+++..+|..+|
T Consensus 23 ~G~i~~~el~~~l~~~g 39 (92)
T 2kn2_A 23 NGYISASELRHVMINLG 39 (92)
T ss_dssp SSEECHHHHHHHHHHTT
T ss_pred CCeEcHHHHHHHHHHhC
Confidence 33444444444444444
No 143
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=20.40 E-value=1.7e+02 Score=18.50 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=44.4
Q ss_pred CchhHHHHHHhhhC-CCCccccHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCCCCccCcccHHHHHHhcCCchhHHHHH
Q 038014 39 LPIANVGRIMKQIL-PPNAKISKEAKE-TMQECVS-EFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLK 115 (140)
Q Consensus 39 LP~A~V~RI~K~~l-p~~~rIskdA~~-al~~aa~-~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~ 115 (140)
++...+.++++..= .++..|+-+-.. .+..... .-...-...+.......+.-.|+.+++..+|..+|..-=...+.
T Consensus 44 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~ 123 (147)
T 4ds7_A 44 PSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVD 123 (147)
T ss_dssp CCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHH
Confidence 45556666666552 123455544322 2221110 00111223455666677888999999999999998654344444
Q ss_pred HHHHH
Q 038014 116 RYLHR 120 (140)
Q Consensus 116 ~~l~~ 120 (140)
..+..
T Consensus 124 ~~~~~ 128 (147)
T 4ds7_A 124 EMLRE 128 (147)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 144
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=20.27 E-value=50 Score=20.64 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=17.2
Q ss_pred CcccHHHHHHhc--CCchhHHHHH
Q 038014 94 NGDDICWALATL--GFDNYADQLK 115 (140)
Q Consensus 94 ~~eDVl~ALe~l--gf~~y~~~l~ 115 (140)
+++||..-|+.+ ||+.|.+...
T Consensus 7 t~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 7 TVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 678888888886 8888877554
No 145
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.05 E-value=1.7e+02 Score=21.64 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcccHHHHHHh
Q 038014 39 LPIANVGRIMKQILP-PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAT 104 (140)
Q Consensus 39 LP~A~V~RI~K~~lp-~~~rIskdA~~al~~aa~~Fi~~Las~A~~~a~~~kRKTI~~eDVl~ALe~ 104 (140)
+|...+..+++..+. .+..++.++...|.+.+.--+..+.......+.. ...|+.+||..++..
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~ 225 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITAT 225 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCC
Confidence 455666666665442 3567999999888776543333333333223322 346888888877654
No 146
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=20.04 E-value=1.4e+02 Score=19.46 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=18.8
Q ss_pred HhCCCCccCcccHHHHHHhcCCchhHHHHHHH
Q 038014 86 HKEKRKTVNGDDICWALATLGFDNYADQLKRY 117 (140)
Q Consensus 86 ~~~kRKTI~~eDVl~ALe~lgf~~y~~~l~~~ 117 (140)
...+--+|+.+++..+|..+|+.--...+...
T Consensus 26 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 57 (153)
T 2ovk_B 26 DQDRDGFIGMEDLKDMFSSLGRVPPDDELNAM 57 (153)
T ss_dssp CCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHH
T ss_pred CCCCCCeECHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44555567777777777777665433334333
Done!