BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038016
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
DV+SFGV++ E+L + I + E +L + +E+ +L ++D + + R E +
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL 282
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEVAFEL 88
A +CL + + RP+M +V ++L
Sbjct: 283 RKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
DV+SFGV++ E+L + I + E +L + +E+ +L ++D + + R E +
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL 282
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEVAFEL 88
A +CL + + RP+M +V ++L
Sbjct: 283 RKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 1 DVHSFGVLIVELLTGQKP--IRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREE 58
DV +GV+++EL+TGQ+ + +++D L+ + +KE +L ++D + ++E
Sbjct: 217 DVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDE 276
Query: 59 EIITVAMLAKRCLNMIGKKRPTMKEVAFELAG 90
E+ + +A C +RP M EV L G
Sbjct: 277 EVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 1 DVHSFGVLIVELLTGQKP--IRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREE 58
DV +GV+++EL+TGQ+ + +++D L+ + +KE +L ++D + ++E
Sbjct: 225 DVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDE 284
Query: 59 EIITVAMLAKRCLNMIGKKRPTMKEVAFELAG 90
E+ + +A C +RP M EV L G
Sbjct: 285 EVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 316
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
D SFGVL+ E+L GQ P D EE
Sbjct: 201 DWWSFGVLLYEMLIGQSPFHGQDEEE 226
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
D SFGVL+ E+L GQ P D EE
Sbjct: 200 DWWSFGVLLYEMLIGQSPFHGQDEEE 225
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTD 23
DV S+GVL+ ELLTG+ P R D
Sbjct: 196 DVWSYGVLLWELLTGEVPFRGID 218
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 193 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 252
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 253 KKKRDERPLFPQILA 267
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 196 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 255
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 256 KKKRDERPLFPQILA 270
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 196 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 255
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 256 KKKRDERPLFPQILA 270
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 250
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 251 KKKRDERPLFPQILA 265
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 250
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 251 KKKRDERPLFPQILA 265
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 250
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 251 KKKRDERPLFPQILA 265
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 278
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 279 KKKRDERPLFPQILA 293
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 211 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 270
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 271 KKKRDERPLFPQILA 285
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 218 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 277
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 278 KKKRDERPLFPQILA 292
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
D++SFGV+++E++TG P E L +E + D +D + + +A +
Sbjct: 210 DIYSFGVVLLEIITGL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK-MNDADSTSV 267
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEVAFELAGIRAS 94
+ +A +CL+ KRP +K+V L + AS
Sbjct: 268 EAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 301
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV---GYF---LEAMKEN--RLFDVLDARVL 52
DV++FG+++ EL+TGQ P + ++ + + GY L ++ N + L A L
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 278
Query: 53 KEAREEEIITVAMLA 67
K+ R+E + +LA
Sbjct: 279 KKKRDERPLFPQILA 293
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
D++SFGV+++E++TG P E L +E + D +D + + +A +
Sbjct: 216 DIYSFGVVLLEIITGL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK-MNDADSTSV 273
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEVAFELAGIRAS 94
+ +A +CL+ KRP +K+V L + AS
Sbjct: 274 EAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
D++SFGV+++E++TG P E L +E + D +D + + +A +
Sbjct: 216 DIYSFGVVLLEIITGL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK-MNDADSTSV 273
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEVAFELAGIRAS 94
+ +A +CL+ KRP +K+V L + AS
Sbjct: 274 EAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|2HNG|A Chain A, The Crystal Structure Of Protein Of Unknown Function
Sp1558 From Streptococcus Pneumoniae
Length = 127
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 47 LDARVLKEAREEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAGI 91
+D R++ E E V LA+ CLN + + + E+A +L GI
Sbjct: 79 IDGRIVNEPSELNQEEVETLARPCLNXLNRLTYEVTEIALDLPGI 123
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV 31
D SFGVL+ E+LTG P + D +E +++
Sbjct: 209 DWWSFGVLMFEMLTGTLPFQGKDRKETMTMI 239
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV 31
D SFGVL+ E+LTG P + D +E +++
Sbjct: 208 DWWSFGVLMFEMLTGTLPFQGKDRKETMTMI 238
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV 31
D SFGVL+ E+LTG P + D +E +++
Sbjct: 208 DWWSFGVLMFEMLTGTLPFQGKDRKETMTMI 238
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLV 31
D S+GVL+ E+LTG P + D +E +L+
Sbjct: 212 DWWSYGVLMFEMLTGSLPFQGKDRKETMTLI 242
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
D++SFGV+++E++TG P E L +E + D +D + +A +
Sbjct: 207 DIYSFGVVLLEIITGL-PAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKX-NDADSTSV 264
Query: 61 ITVAMLAKRCLNMIGKKRPTMKEV 84
+A +CL+ KRP +K+V
Sbjct: 265 EAXYSVASQCLHEKKNKRPDIKKV 288
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
D +FGVL+ E+L GQ P D +E
Sbjct: 203 DWWAFGVLLYEMLAGQAPFEGEDEDE 228
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
DV++FG+++ EL+TGQ P + ++ +
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINNRD 232
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
DV++FG+++ EL+TGQ P + ++ +
Sbjct: 195 DVYAFGIVLYELMTGQLPYSNINNRD 220
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
DV++FG+++ EL+TGQ P + ++ +
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINNRD 232
>pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
Length = 593
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 24 SEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEIITVAMLAKRCLNMIGKKRPTMKE 83
S+ + L+G + ++EN LFD+++ +++A+++ IT ++ + N G +P+M+
Sbjct: 53 SKLSRQLLGASSDRLQENSLFDIVN--TIRQAKDDRNITGIVMDLK--NFAGGDQPSMQY 108
Query: 84 VAFELAGIRAS 94
+ L R S
Sbjct: 109 IGKALKEFRDS 119
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 30.0 bits (66), Expect = 0.54, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
D +FGVL+ E+L GQ P D +E
Sbjct: 524 DWWAFGVLLYEMLAGQAPFEGEDEDE 549
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSE---------EDKSLVGYFLEAMKENRLFDVLDARV 51
DV SFGV++ EL T + +S +E + + +V + +E +K N D
Sbjct: 199 DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDG-- 256
Query: 52 LKEAREEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAGIRASIGA 97
+E + M+ C N +RP+ +++A + IR ++
Sbjct: 257 ---CPDE----IYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 295
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSE---------EDKSLVGYFLEAMKENRLFDVLDARV 51
DV SFGV++ EL T + +S +E + + +V + +E +K N D
Sbjct: 203 DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDG-- 260
Query: 52 LKEAREEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAGIRASIGASI 99
+E + M+ C N +RP+ +++A + IR ++ +
Sbjct: 261 ---CPDE----IYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAGLV 301
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGY 33
DV+SFGV++ EL T Q+P + + + + VG+
Sbjct: 221 DVYSFGVILWELATLQQPWGNLNPAQVVAAVGF 253
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGY 33
DV+SFGV++ EL T Q+P + + + + VG+
Sbjct: 221 DVYSFGVILWELATLQQPWGNLNPAQVVAAVGF 253
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDK---------SLVGYFLEAMKENRLF-----DV 46
DV + G L+ E+ G+ P+ DS+ D+ +L+ E +N +F
Sbjct: 207 DVWAIGCLVTEMFMGE-PLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPE 265
Query: 47 LDARVLKEAREEEIITVAM-LAKRCLNMIGKKRPTMKEV 84
+ R E R ++ V + LAK+CL++ KRP E+
Sbjct: 266 IKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAEL 304
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 1 DVHSFGVLIVELLT-GQKPIRSTDS 24
DV SFGVL+ ELLT G P R D
Sbjct: 210 DVWSFGVLLWELLTRGAPPYRHIDP 234
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 26/94 (27%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYF----LEAMKENRLFDVLDARVLKEAR 56
D+ S G++++E++ G+ P YF L+AM+ R+ D L RV
Sbjct: 223 DIWSLGIMVIEMIDGEPP--------------YFNEPPLQAMR--RIRDSLPPRV----- 261
Query: 57 EEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAG 90
+++ V+ + + L+++ + P+ + A EL G
Sbjct: 262 -KDLHKVSSVLRGFLDLMLVREPSQRATAQELLG 294
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEE 26
D ++GVL+ E+L GQ P D +E
Sbjct: 202 DWWAYGVLLYEMLAGQPPFDGEDEDE 227
>pdb|4G6U|B Chain B, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM ESCHERICHIA
COLI
Length = 177
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 14 TGQKPIRST----DSEEDKSLVGYFLEAMKENRLFDVLDARV----LKEAREEEIITVAM 65
TG+ P+ S +DKSL L+A+ ++R DVL+ RV L++++E+ +A
Sbjct: 31 TGRDPLFSPRLLQPDVDDKSLGEEILQALSDSRTLDVLEERVAFFDLEKSKEQYAAWIAT 90
Query: 66 LAKR 69
L ++
Sbjct: 91 LXEK 94
>pdb|2JOX|A Chain A, Embryonic Neural Inducing Factor Churchill Is Not A Dna-
Binding Zinc Finger Protein: Solution Structure Reveals
A Solvent-Exposed Beta-Sheet And Zinc Binuclear Cluster
Length = 106
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 16 QKPIRSTDSEEDKS-LVGYFLEAMKENRLFDVLDARVLKEAREEEIITVAMLAKRCLNMI 74
+ P R E+ S L+ + A+ R F ++ + LKE EEI+T L K C ++I
Sbjct: 8 EYPNRGNTCLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVI 67
Query: 75 GKKRPTM 81
+ T
Sbjct: 68 ARHEYTF 74
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEED 27
DV+S+G+++ EL+TG+ P ++ +
Sbjct: 219 DVYSYGIVLYELMTGELPYSHINNRDQ 245
>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain
Length = 360
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
D+ SFG ++ EL TG R+ + E +++ ++ + +N L++ K ++E+
Sbjct: 241 DMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDEL 300
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEED 27
D+ S G+ +VE+ G+ PI D++ED
Sbjct: 185 DIWSMGLSLVEMAVGRYPIPPPDAKED 211
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 41 NRLFDVLDARVLKEAR----EEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAGIR 92
N + D LDAR++ +AR E E + +A A+ IG + +M F + G++
Sbjct: 1205 NEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQ 1260
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 41 NRLFDVLDARVLKEAR----EEEIITVAMLAKRCLNMIGKKRPTMKEVAFELAGIR 92
N + D LDAR++ +AR E E + +A A+ IG + +M F + G++
Sbjct: 1205 NEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQ 1260
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 29/92 (31%)
Query: 1 DVHSFGVLIVELLTGQKPIRSTDSEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEI 60
DV S G+ +VEL TGQ P ++ ++ F+VL +VL+E E +
Sbjct: 211 DVWSLGISLVELATGQFPYKNCKTD------------------FEVL-TKVLQE--EPPL 249
Query: 61 ITVAM--------LAKRCLNMIGKKRPTMKEV 84
+ M K CL +KRP ++
Sbjct: 250 LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKL 281
>pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
Length = 197
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 18 PIRSTDSEEDKSLVGYFLEA---MKENRLFD--VLDARVLKEAREEEIITVAMLAKRCLN 72
P+R E+ K + Y + +E R FD V+ VLKE ++ A+ + CL+
Sbjct: 58 PLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKK----ALFFEGCLS 113
Query: 73 MIGKKRPTMKEV-----AFELAGIRASIGAS-----IMQHNCDDID 108
+ G + + + ++ G R + AS I+QH CD +D
Sbjct: 114 VDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLD 159
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 105 DDIDFVAGHSTGLSEIGSSSAGSIL 129
DD D A H TG +++G + A S+L
Sbjct: 174 DDYDRAAPHGTGAAKVGGNYAASLL 198
>pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
Length = 593
Score = 25.8 bits (55), Expect = 9.4, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 24 SEEDKSLVGYFLEAMKENRLFDVLDARVLKEAREEEIITVAMLAKRCLNMIGKKRPTMKE 83
S+ + L+G + ++EN LFD+++ +++A+++ IT + + N G +P+ +
Sbjct: 53 SKLSRQLLGASSDRLQENSLFDIVN--TIRQAKDDRNITGIVXDLK--NFAGGDQPSXQY 108
Query: 84 VAFELAGIRAS 94
+ L R S
Sbjct: 109 IGKALKEFRDS 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,650,966
Number of Sequences: 62578
Number of extensions: 121817
Number of successful extensions: 517
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 59
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)