Your job contains 1 sequence.
>038017
VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYD
VKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKEK
ECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVIS
FLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSF
KELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESA
IPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHP
SISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMV
EVSVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDS
LLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTIL
TMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCF
AVKQHISHMK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038017
(610 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018561 - symbol:AT1G65810 species:3702 "Arabi... 588 2.5e-70 3
TAIR|locus:2166173 - symbol:AT5G37150 species:3702 "Arabi... 502 8.6e-68 3
TAIR|locus:2166183 - symbol:AT5G37160 species:3702 "Arabi... 519 1.9e-58 2
TAIR|locus:2018536 - symbol:AT1G65780 species:3702 "Arabi... 588 2.9e-56 1
TAIR|locus:2173033 - symbol:AT5G52090 species:3702 "Arabi... 494 1.6e-55 2
TAIR|locus:2166163 - symbol:AT5G37140 species:3702 "Arabi... 492 1.6e-55 2
TAIR|locus:2135472 - symbol:AT4G05540 species:3702 "Arabi... 511 8.8e-55 2
TAIR|locus:2152627 - symbol:AT5G37030 species:3702 "Arabi... 429 2.6e-48 2
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 257 1.4e-22 2
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 246 9.2e-22 2
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 266 7.7e-18 2
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 265 8.8e-18 2
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 266 1.7e-17 2
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 240 2.5e-17 2
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 232 9.7e-17 2
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 240 1.1e-15 2
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 229 2.3e-15 2
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 229 2.5e-15 1
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 229 2.5e-15 1
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 237 1.5e-14 2
SGD|S000004422 - symbol:SEN1 "Presumed helicase and subun... 227 1.9e-14 2
UNIPROTKB|E1BQD2 - symbol:C4H4orf21 "Uncharacterized prot... 210 1.4e-13 2
UNIPROTKB|Q6ZU11 - symbol:Q6ZU11 "Uncharacterized protein... 205 1.6e-13 2
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 212 2.0e-13 1
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 212 2.0e-13 1
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 212 2.0e-13 1
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 212 2.0e-13 1
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 212 2.0e-13 1
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 212 2.1e-13 1
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 212 2.1e-13 1
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 212 2.1e-13 1
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 212 2.4e-13 1
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 207 6.7e-13 1
UNIPROTKB|E1BG37 - symbol:E1BG37 "Uncharacterized protein... 203 8.7e-13 2
UNIPROTKB|F1PCI1 - symbol:C4orf21 "Uncharacterized protei... 201 9.1e-13 2
UNIPROTKB|G5EA02 - symbol:C4orf21 "Uncharacterized protei... 205 1.2e-12 2
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 204 1.2e-12 1
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 217 1.3e-12 3
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 214 1.6e-12 2
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 203 2.4e-12 1
RGD|2322000 - symbol:LOC100363957 "hypothetical protein L... 205 2.7e-12 2
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 213 3.3e-12 2
DICTYBASE|DDB_G0289529 - symbol:DDB_G0289529 species:4468... 210 5.8e-12 2
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 195 1.1e-11 1
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 205 1.6e-11 3
FB|FBgn0030354 - symbol:Upf1 "Upf1" species:7227 "Drosoph... 206 2.2e-11 2
FB|FBgn0035842 - symbol:CG7504 species:7227 "Drosophila m... 195 2.3e-11 1
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 182 4.1e-10 2
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 183 6.0e-10 2
CGD|CAL0001700 - symbol:orf19.702 species:5476 "Candida a... 177 1.2e-09 1
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 173 3.4e-09 1
POMBASE|SPCC737.07c - symbol:SPCC737.07c "DNA polymerase ... 167 7.4e-09 1
GENEDB_PFALCIPARUM|MAL7P1.12 - symbol:MAL7P1.12 "erythroc... 171 1.3e-08 1
UNIPROTKB|Q8IC35 - symbol:MAL7P1.12 "Erythrocyte membrane... 171 1.3e-08 1
ZFIN|ZDB-GENE-070424-144 - symbol:si:ch211-183d5.1 "si:ch... 154 1.3e-07 1
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 170 3.1e-07 2
RGD|1565575 - symbol:Setx "senataxin" species:10116 "Ratt... 148 3.4e-07 1
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 159 9.9e-07 2
DICTYBASE|DDB_G0274797 - symbol:aqr "intron-binding prote... 112 1.1e-06 3
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 155 1.8e-06 2
UNIPROTKB|Q7Z333 - symbol:SETX "Probable helicase senatax... 159 2.9e-06 2
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 149 6.2e-06 2
DICTYBASE|DDB_G0271732 - symbol:DDB_G0271732 "AN1-type zi... 142 6.9e-06 1
UNIPROTKB|D4AEB3 - symbol:Setx "Protein Setx" species:101... 152 9.5e-06 2
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 156 1.1e-05 2
MGI|MGI:2443480 - symbol:Setx "senataxin" species:10090 "... 151 1.2e-05 2
TAIR|locus:2056896 - symbol:AT2G03270 species:3702 "Arabi... 137 1.3e-05 1
UNIPROTKB|E2R760 - symbol:IGHMBP2 "Uncharacterized protei... 147 1.9e-05 2
UNIPROTKB|E2R8W1 - symbol:IGHMBP2 "Uncharacterized protei... 147 2.0e-05 2
SGD|S000001500 - symbol:HCS1 "Hexameric DNA polymerase al... 133 3.8e-05 1
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 154 4.8e-05 2
UNIPROTKB|Q5ZKG3 - symbol:DNA2 "DNA replication ATP-depen... 142 8.1e-05 2
UNIPROTKB|F1NWZ8 - symbol:DNA2 "DNA replication ATP-depen... 142 8.5e-05 2
UNIPROTKB|E1BY42 - symbol:E1BY42 "Uncharacterized protein... 131 0.00010 1
TAIR|locus:2200996 - symbol:SDE3 "SILENCING DEFECTIVE" sp... 131 0.00010 1
ZFIN|ZDB-GENE-090313-71 - symbol:dna2 "DNA replication he... 132 0.00012 1
UNIPROTKB|F1MHU8 - symbol:IGHMBP2 "Uncharacterized protei... 130 0.00013 1
UNIPROTKB|I6L9H4 - symbol:HELZ "Probable helicase with zi... 121 0.00014 2
CGD|CAL0006154 - symbol:orf19.6199 species:5476 "Candida ... 126 0.00024 1
UNIPROTKB|Q5AAW1 - symbol:HCS1 "Putative uncharacterized ... 126 0.00024 1
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 145 0.00025 2
ASPGD|ASPL0000064563 - symbol:AN7014 species:162425 "Emer... 128 0.00033 1
UNIPROTKB|Q60560 - symbol:IGHMBP2 "DNA-binding protein SM... 134 0.00036 2
MGI|MGI:99954 - symbol:Ighmbp2 "immunoglobulin mu binding... 134 0.00036 2
POMBASE|SPBC16D10.04c - symbol:dna2 "DNA replication endo... 127 0.00041 1
UNIPROTKB|Q8QHA5 - symbol:dna2 "DNA replication ATP-depen... 124 0.00062 1
UNIPROTKB|F1MKC7 - symbol:Bt.110099 "Uncharacterized prot... 126 0.00076 1
>TAIR|locus:2018561 [details] [associations]
symbol:AT1G65810 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
EMBL:CP002684 GO:GO:0004386 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI01019905 RefSeq:NP_176757.1
UniGene:At.52388 ProteinModelPortal:F4IBK8 SMR:F4IBK8 PRIDE:F4IBK8
EnsemblPlants:AT1G65810.1 GeneID:842892 KEGG:ath:AT1G65810
OMA:DSEINKR ArrayExpress:F4IBK8 Uniprot:F4IBK8
Length = 1050
Score = 588 (212.0 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 130/242 (53%), Positives = 166/242 (68%)
Query: 193 NMGSEDLEELFSHSVDED-FSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNM 251
N + L + + V D + + +K T E+ S+ L L + + LP ++
Sbjct: 464 NQTNNLLRNIAASDVMRDGYGRMKYKLKDTGDENDSRTQDCLEMLTSISMSIKLPDFISK 523
Query: 252 GLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHA 311
L+ C A L+FCTASSS +LH + QL LVIDEAAQLKE ESAIPLQL +QHA
Sbjct: 524 FELQKLCLDNAYLLFCTASSSARLHMSSPIQL--LVIDEAAQLKECESAIPLQLRGLQHA 581
Query: 312 ILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFY 371
IL+GDE QLPAM++S+++ EA GRSLFERL LGH+K LL+MQYRMHPSIS FPN FY
Sbjct: 582 ILIGDEKQLPAMIKSNIASEADLGRSLFERLVLLGHNKQLLNMQYRMHPSISIFPNREFY 641
Query: 372 ENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNMVEVSVVMKILL 430
+ KILDAP+VR RSYEK+FLP MYGPY+FIN+ GRE+F E +S +N+VEVSVV +I+
Sbjct: 642 DMKILDAPSVRLRSYEKKFLPEKMYGPYSFINIAYGREQFGEGYSSKNLVEVSVVAEIVS 701
Query: 431 NL 432
L
Sbjct: 702 KL 703
Score = 137 (53.3 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 35/103 (33%), Positives = 55/103 (53%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAP---FAEVVALEDSKPYGAI 57
V +IP +F S +YFESFV P++EET A L SSM + +A F E+ +D KP +
Sbjct: 44 VGKIPNTFTSTKEYFESFVKPIIEETHADLLSSMGTIRRAQAFKFWEIKPGKDFKPPRDL 103
Query: 58 LYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQ 100
Y+V + N + G + + D++ + D +P DL+
Sbjct: 104 YYEVTLQM-TNEYMTKGGQNLLEV-NDLIAVTDKRPIRIDDLR 144
Score = 96 (38.9 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 40/149 (26%), Positives = 65/149 (43%)
Query: 135 TFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNM 194
+F +FV ER L L HLP S + +F+V ++ LL N+
Sbjct: 423 SFKDFVEERLSRLRYDLHHQFTTLCLHLPTSLL---SFRVAEK----MNQTNNLL--RNI 473
Query: 195 GSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLL 254
+ D+ + + + + +K T E+ S+ L L + + LP ++ L
Sbjct: 474 AASDV-------MRDGYGRMKYKLKDTGDENDSRTQDCLEMLTSISMSIKLPDFISKFEL 526
Query: 255 KDFCFTKASLIFCTASSSYKLHSVAMEQL 283
+ C A L+FCTASSS +LH + QL
Sbjct: 527 QKLCLDNAYLLFCTASSSARLHMSSPIQL 555
Score = 43 (20.2 bits), Expect = 2.5e-70, Sum P(3) = 2.5e-70
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 433 NLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVT 478
+L VP W V SN K++ SD+S +F S VE V+
Sbjct: 980 DLVVPMQWPVDSNSCSKKDIV-----SDVS-RSFALLSVVEEETVS 1019
>TAIR|locus:2166173 [details] [associations]
symbol:AT5G37150 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004386
KO:K10706 IPI:IPI01020555 RefSeq:NP_198531.2 UniGene:At.55176
ProteinModelPortal:F4K5W5 SMR:F4K5W5 PRIDE:F4K5W5
EnsemblPlants:AT5G37150.1 GeneID:833688 KEGG:ath:AT5G37150
OMA:RSVDEYY Uniprot:F4K5W5
Length = 839
Score = 502 (181.8 bits), Expect = 8.6e-68, Sum P(3) = 8.6e-68
Identities = 101/193 (52%), Positives = 135/193 (69%)
Query: 241 KELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESA 300
K +P + ++ FC A +I CTAS + +++ ++ LV+DEAAQLKE ES
Sbjct: 485 KRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAAQLKECESV 544
Query: 301 IPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHP 360
LQLP ++HAIL+GDE QLPAMV + + +A FGRSLFERL LGH+KHLL +QYRMHP
Sbjct: 545 AALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHP 604
Query: 361 SISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNM 419
SIS FPN FY +I DA V++ Y+K+FL G M+G ++FINV G+EEF + HS +NM
Sbjct: 605 SISRFPNKEFYGGRIKDAENVKESIYQKRFLQGNMFGSFSFINVGRGKEEFGDGHSPKNM 664
Query: 420 VEVSVVMKILLNL 432
VEV+VV +I+ NL
Sbjct: 665 VEVAVVSEIISNL 677
Score = 134 (52.2 bits), Expect = 8.6e-68, Sum P(3) = 8.6e-68
Identities = 34/116 (29%), Positives = 59/116 (50%)
Query: 2 KQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGA----- 56
K +P F+SV +Y++ FV LL E +LFSS++ VSK+PF ++ ++E +
Sbjct: 30 KTVPDKFRSVDEYYQCFVPHLLIEAHTELFSSLKSVSKSPFVQIRSMETKTKQSSGSSSN 89
Query: 57 -ILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSED 111
+ YD+ + + + Y+ GD++ L KP +DL + + FS D
Sbjct: 90 KLFYDITLKATESLSAK-----YQPKCGDLIALTMDKPRRINDLNPLLLAYVFSSD 140
Score = 102 (41.0 bits), Expect = 8.6e-68, Sum P(3) = 8.6e-68
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 99 LQRVGRMWTFSEDINGN------EIKEKE-CRKDAEVSKV--EIKTFLEFVRERFKCTAA 149
+QR+ + F E+ G E++E E ++AE +V I T EFV++ F +
Sbjct: 351 MQRLESLIQFLENPEGKYERHVYELEEVERMEEEAERQEVVVNIPTIGEFVKKNFNSLSE 410
Query: 150 PLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEE 201
+ +CI +L THLPK Y+ D+ +++ L L ++N D EE
Sbjct: 411 EVETCIVDLFTHLPKVYLPYDDVKIMIASRQSLQRIRYFL-RENSSRVDFEE 461
Score = 48 (22.0 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 237 WNSFKELNLPSAMNMGLLKDFCFTKASL 264
+++ E+NL +AMN LL+D + SL
Sbjct: 800 YDATDEMNLRNAMNEALLEDVSSSLGSL 827
Score = 45 (20.9 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 503 GRELDLPFEVTDEQLEMILFPRSTFI-LGRSGTGKTTILTMKLFQNEKHHHMAKEQFYG 560
G E LP V +E E F RS F L G K +L ++ + ++FYG
Sbjct: 559 GDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKH-LLDVQYRMHPSISRFPNKEFYG 616
Score = 39 (18.8 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 202 LFSHSVDEDFSQSIVDIKYTLHESRSK 228
LF V ++ ++D++Y +H S S+
Sbjct: 582 LFERLVLLGHNKHLLDVQYRMHPSISR 608
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 528 ILGRSGTGKTTILTMKLF 545
I G GTGKT + LF
Sbjct: 247 IWGPPGTGKTKTVATLLF 264
>TAIR|locus:2166183 [details] [associations]
symbol:AT5G37160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00521499 RefSeq:NP_198532.1 UniGene:At.55177
ProteinModelPortal:F4K5W6 SMR:F4K5W6 PRIDE:F4K5W6
EnsemblPlants:AT5G37160.1 GeneID:833689 KEGG:ath:AT5G37160
OMA:WAELISE Uniprot:F4K5W6
Length = 871
Score = 519 (187.8 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
Identities = 130/320 (40%), Positives = 188/320 (58%)
Query: 117 IKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSC-IFNLGTHLPKSYIGEDNFQVL 175
++ E + + V+++E++ E +++ + ++ + +L THLPKS+I + + L
Sbjct: 409 LENTETKYEQHVNELELERMTEDEKKKEEVEERTMQEVDMADLSTHLPKSFISSKDVKNL 468
Query: 176 GTVISFLDSFETLLFQDNMGSEDLEEL-FSHSVDEDFSQSI-VDIKYTLHESRSKCHSVL 233
L L Q+N +D ++ F + F++ I VD L C +L
Sbjct: 469 IAACQALHRVRYFL-QENSSRDDFKKGGFRFNC---FNKLISVDALQAL------C--LL 516
Query: 234 RELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQ 293
+ + F N N + K FC A +IFCTASS ++ + + LV+DE AQ
Sbjct: 517 PKCFGIFGLAN-----NEDIRK-FCLQNADIIFCTASSVANINPARIGSVDLLVVDETAQ 570
Query: 294 LKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLS 353
LKE ES LQLP + HA+L+GDE QLPAMV + +A FGRSLFERL +GHSKHLL+
Sbjct: 571 LKECESVAALQLPGLCHALLIGDEYQLPAMVHNEECDKAKFGRSLFERLVLIGHSKHLLN 630
Query: 354 MQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE 413
+QYRMHPSIS FPN FY +I DA V++ YEK+FL G M+G ++FINV G+EEF +
Sbjct: 631 VQYRMHPSISRFPNKEFYGGRITDAANVQESIYEKRFLQGNMFGTFSFINVGRGKEEFGD 690
Query: 414 -HSCRNMVEVSVVMKILLNL 432
HS +NMVEV+V+ KI+ NL
Sbjct: 691 GHSPKNMVEVAVISKIISNL 710
Score = 112 (44.5 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSK-PYG---A 56
+ IP F SV +Y + FV LLEETR +LFSS +SK+P + ++++E Y +
Sbjct: 40 IMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVIEYSGRSS 99
Query: 57 I--LYDVKVDCWRNRFSNPGKEPYKTLPGDILVLA 89
I +D+K+ +++ E Y+ GDI+ L+
Sbjct: 100 IKWFHDIKL----MDYADDKNEIYEPKCGDIIALS 130
>TAIR|locus:2018536 [details] [associations]
symbol:AT1G65780 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 GO:GO:0004386
KO:K10706 InterPro:IPR026852 PANTHER:PTHR10887:SF27 IPI:IPI00534309
RefSeq:NP_176754.1 UniGene:At.52386 ProteinModelPortal:F4IBK4
SMR:F4IBK4 PRIDE:F4IBK4 EnsemblPlants:AT1G65780.1 GeneID:842889
KEGG:ath:AT1G65780 Uniprot:F4IBK4
Length = 1065
Score = 588 (212.0 bits), Expect = 2.9e-56, P = 2.9e-56
Identities = 163/412 (39%), Positives = 225/412 (54%)
Query: 44 EVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVG 103
E + ++D K I D +VD F P T+ G I +L D K + L+ +
Sbjct: 332 ERMKIKDRKDLVNIFIDERVDKLYPCFM-PFYGWKATIDGMIRLLEDPKGQYNLYLENLA 390
Query: 104 RMWTFSEDINGNEIKEKECRKDA----EVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLG 159
R G+ K K ++ +VS ++F +++ E+F L +L
Sbjct: 391 RANNVKRKDTGSVFKRKGNEQNENIVEQVSDTRPQSFQDYLPEKFSELRKDLDLHFSSLC 450
Query: 160 THLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEE-LFSHSVDED-FSQSIVD 217
THLP + + + I + L D + E ++ L + D FS V
Sbjct: 451 THLPTALLSSQAATRMYEAIDLVRDVTILAILDGVTGEGVKSVLIPNGEGSDRFSSQHV- 509
Query: 218 IKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHS 277
T+ + K +LR + F LP+ + L+K+ C A L+F TAS S +L++
Sbjct: 510 ---TVEDDYLK---LLRSIPEIFP---LPAVSDRHLIKELCLGHACLLFSTASCSARLYT 560
Query: 278 VAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRS 337
QL LVIDEAAQLKE ES+IP+QLP ++H ILVGDE QLPAMVES ++ EA FGRS
Sbjct: 561 GTPIQL--LVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIALEAGFGRS 618
Query: 338 LFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYG 397
LFERL+ LGH K++L++QYRMH SIS FPN Y KILDAPTVR+R+Y KQ+LPG MYG
Sbjct: 619 LFERLALLGHKKYMLNIQYRMHCSISSFPNKELYGKKILDAPTVRQRNYTKQYLPGEMYG 678
Query: 398 PYAFINVFGGREEFIE---HSCRNMVEVSVVMKILLNLNLEVPKTWAVTSNI 446
PY+FIN+ GREE+ E S +N VEV VV I+ NL L+V + N+
Sbjct: 679 PYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAIIANL-LQVSEKTKTRINV 729
Score = 142 (55.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPY---GAI 57
V++IP+ F+S YF++F+ PL+EET A L SSM K+ +AP E+ + + Y +
Sbjct: 33 VEKIPMEFESTGDYFKTFIPPLIEETHAALLSSMRKLWQAPVVEISYIMQTAEYKLPNDL 92
Query: 58 LYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKP 93
Y V++ N S K +P D++ L D +P
Sbjct: 93 FYKVRLSGISNEAST------KLMPRDLISLTDQRP 122
Score = 39 (18.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 528 ILGRSGTGKTTILTMKLF 545
I G GTGKT ++ LF
Sbjct: 264 IWGPPGTGKTKTTSVLLF 281
>TAIR|locus:2173033 [details] [associations]
symbol:AT5G52090 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0004519 eggNOG:COG1112
EMBL:AB015478 KO:K10706 IPI:IPI00525648 RefSeq:NP_200022.1
UniGene:At.65668 ProteinModelPortal:Q9FJ83 SMR:Q9FJ83 PRIDE:Q9FJ83
EnsemblPlants:AT5G52090.1 GeneID:835285 KEGG:ath:AT5G52090
TAIR:At5g52090 HOGENOM:HOG000083772 InParanoid:Q9FJ83 OMA:TACEASE
PhylomeDB:Q9FJ83 ProtClustDB:CLSN2686886 Genevestigator:Q9FJ83
Uniprot:Q9FJ83
Length = 676
Score = 494 (179.0 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 99/193 (51%), Positives = 134/193 (69%)
Query: 241 KELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESA 300
K +P + ++ FC A +I CTAS + +++ ++ LV+DEAAQLKE ES
Sbjct: 322 KRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAAQLKECESV 381
Query: 301 IPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHP 360
LQLP ++HAIL+GDE QLPAMV + + +A FGRSLFERL LGH+KHLL +QYRMHP
Sbjct: 382 AALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHP 441
Query: 361 SISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNM 419
SIS FPN FY +I DA V++ Y+K+FL G M+ ++FINV G+EEF + HS +NM
Sbjct: 442 SISRFPNKEFYGGRIKDAENVKESIYQKRFLKGNMFDSFSFINVGRGKEEFGDGHSPKNM 501
Query: 420 VEVSVVMKILLNL 432
VEV+V+ +I+ NL
Sbjct: 502 VEVAVISEIISNL 514
Score = 96 (38.9 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 116 EIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVL 175
E++ + E V I TF EFV++ F + +++CI +L THLPK Y+ ++ + +
Sbjct: 214 EVERMNEEDEREEVVVNIPTFGEFVQKNFNSLSEEVKTCIVDLYTHLPKVYLPYEDVKKM 273
Query: 176 GTVISFLDSFETLLFQDNMGSEDLEE 201
L L ++N D EE
Sbjct: 274 IASRQTLQRIRYFL-RENSSRVDFEE 298
>TAIR|locus:2166163 [details] [associations]
symbol:AT5G37140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00534313 RefSeq:NP_198530.1 UniGene:At.55175
ProteinModelPortal:F4K5W4 SMR:F4K5W4 PRIDE:F4K5W4
EnsemblPlants:AT5G37140.1 GeneID:833686 KEGG:ath:AT5G37140
OMA:TEAKYEH ArrayExpress:F4K5W4 Uniprot:F4K5W4
Length = 692
Score = 492 (178.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 112/236 (47%), Positives = 151/236 (63%)
Query: 199 LEELFSHSVDEDFSQSIVDIKYTLHESRSK-CHSVLRELWNSFKELNLPSAMNMGLLKDF 257
L+E FS +DF + +K+ S C +LR L F+ ++ + K F
Sbjct: 308 LKENFSR---DDFKKG--SLKFDCFNGVSAYCLQILRLLPERFEVSDM---LENNDTKTF 359
Query: 258 CFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDE 317
C A +IFCTAS + ++ + + LV+DEAAQLKE ES LQL ++HA+L+GDE
Sbjct: 360 CLQNADIIFCTASGAADMNPIRTGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGDE 419
Query: 318 CQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILD 377
QLPAMV + EA FGRSLFERL LGH+KHLL++QYRMHPSIS FPN FY +I D
Sbjct: 420 LQLPAMVHN----EAKFGRSLFERLVLLGHNKHLLNVQYRMHPSISRFPNKEFYGGRIKD 475
Query: 378 APTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNMVEVSVVMKILLNL 432
A V++ Y+K+FL G M+G ++FINV G EEF + HS +NMVEV+V+ +I+ NL
Sbjct: 476 AANVQESIYQKRFLQGNMFGSFSFINVGRGEEEFGDGHSPKNMVEVAVISEIISNL 531
Score = 98 (39.6 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 116 EIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVL 175
E ++K+ D + ++I TF EFV++ F + L + +L THLPKS+I +N + +
Sbjct: 235 EAEKKKKGADKKPKAIKILTFGEFVKKTFDGFSEELEKGMVDLWTHLPKSFITSENVKSM 294
Query: 176 GTVISFLDSFETLLFQDNMGSEDLEE 201
T L L ++N +D ++
Sbjct: 295 VTARKALQRVRYFL-KENFSRDDFKK 319
>TAIR|locus:2135472 [details] [associations]
symbol:AT4G05540 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002687 GO:GO:0004386
KO:K10706 IPI:IPI00530269 RefSeq:NP_567301.2 UniGene:At.54170
ProteinModelPortal:F4JGH5 SMR:F4JGH5 PRIDE:F4JGH5
EnsemblPlants:AT4G05540.1 GeneID:825906 KEGG:ath:AT4G05540
OMA:WVIGNER Uniprot:F4JGH5
Length = 689
Score = 511 (184.9 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 106/205 (51%), Positives = 139/205 (67%)
Query: 229 CHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVI 288
C LR L K +P+ + ++ FC A +IFCTAS + ++ + + LV+
Sbjct: 377 CVDCLRTLRLLSKRFEIPALLMKEDIRTFCLQNAHIIFCTASGAAEMTAERAGSIDMLVV 436
Query: 289 DEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHS 348
DEAAQLKE ES LQL + HA+L+GDE QLPAMV+S V +A F RSLFERL LGH
Sbjct: 437 DEAAQLKECESVAALQLQGLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERLDSLGHK 496
Query: 349 KHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGR 408
KHLL++QYRMHPSIS FPN FY KI DA V++ +Y+K+FL G M+G ++FINV G+
Sbjct: 497 KHLLNVQYRMHPSISLFPNMEFYGGKISDAEIVKESTYQKRFLQGNMFGSFSFINVGLGK 556
Query: 409 EEFIE-HSCRNMVEVSVVMKILLNL 432
EEF + HS +NMVE++VV +IL NL
Sbjct: 557 EEFGDGHSPKNMVEIAVVSEILTNL 581
Score = 72 (30.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 86 LVLADAKP--ETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRER 143
L+L++ K ET + L G + + E EKE E+ I TF EFV E+
Sbjct: 261 LLLSERKENQETKNILTAFGE-FVMKMFLGSKETPEKE----EEI----ILTFGEFVMEK 311
Query: 144 FKC---TAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGS 196
F T ++ + +L THLPKS++ ++ + + L T L Q+ GS
Sbjct: 312 FDGLSETMKKIQKDMVDLYTHLPKSFLSSNDVKNMIVARQALRQARTFL-QEKQGS 366
>TAIR|locus:2152627 [details] [associations]
symbol:AT5G37030 species:3702 "Arabidopsis thaliana"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] EMBL:CP002688 GO:GO:0004519 KO:K10706
IPI:IPI00540124 RefSeq:NP_198519.1 UniGene:At.55172
ProteinModelPortal:F4K5V7 SMR:F4K5V7 PRIDE:F4K5V7
EnsemblPlants:AT5G37030.1 GeneID:833673 KEGG:ath:AT5G37030
Uniprot:F4K5V7
Length = 638
Score = 429 (156.1 bits), Expect = 2.6e-48, Sum P(2) = 2.6e-48
Identities = 89/151 (58%), Positives = 112/151 (74%)
Query: 283 LKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL 342
++ LV+DEAAQLKE ES LQLP ++HAIL+GDE QLPAMV + +A FGRSLFERL
Sbjct: 348 IEVLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNDQCEKAKFGRSLFERL 407
Query: 343 SYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFI 402
LGH KHLL +QYRMHPSIS FP FY +I DA V++ Y+K+FL G M+G ++FI
Sbjct: 408 VLLGHKKHLLDVQYRMHPSISRFPYKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFSFI 467
Query: 403 NVFGGREEFIE-HSCRNMVEVSVVMKILLNL 432
NV G+EEF + S +NMVEV+VV +I+ NL
Sbjct: 468 NVGRGKEEFGDGDSPKNMVEVAVVSEIISNL 498
Score = 124 (48.7 bits), Expect = 2.6e-48, Sum P(2) = 2.6e-48
Identities = 34/101 (33%), Positives = 54/101 (53%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALED--SKPYGAIL 58
+K IP F SV++Y + FV LLEETR +L +S + +SKA E+ +LE + G++
Sbjct: 31 IKTIPDKFSSVNEYLKCFVPHLLEETRTELSTSFKSLSKAHLFEISSLETMTKESSGSLS 90
Query: 59 YDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDL 99
+ D N + +E Y+ GD++ L +P DL
Sbjct: 91 NKLFYDMSINDALSI-REKYQPKCGDLIALTKERPRGVDDL 130
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 503 GRELDLPFEVTDEQLEMILFPRSTF----ILGRSGTGKTTILTMKLFQNEKHHHMAKEQF 558
G E LP V ++Q E F RS F +LG K +L ++ + ++F
Sbjct: 380 GDEFQLPAMVHNDQCEKAKFGRSLFERLVLLGH----KKHLLDVQYRMHPSISRFPYKEF 435
Query: 559 YG 560
YG
Sbjct: 436 YG 437
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 257 (95.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 61/150 (40%), Positives = 83/150 (55%)
Query: 261 KASLIFCTASSS-YKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
+A ++F T SSS KL S +VIDEAAQ E PL L + +LVGD Q
Sbjct: 752 EAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAAR-CVLVGDPQQ 810
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
LPA V S +G + RSLFER G LL++QYRMHP I FP+ YFY+ ++ D+
Sbjct: 811 LPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLKDSE 870
Query: 380 TVRKRSYEKQFLPGPMYGPYAFINVFGGRE 409
++ ++ + P+ PY F N+ GRE
Sbjct: 871 SISSAP-DEIYYKDPVLRPYLFFNISHGRE 899
Score = 90 (36.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYD 60
++ +P F+S+ +Y F L EE RAQL+S+ ++++A V ++ + YD
Sbjct: 254 LRSVPERFESMEEYVRVFEPLLFEECRAQLYSTWVELAEANTYVKVRIKSIERRERGWYD 313
Query: 61 VKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRM 105
V ++ N K +K GD+ VL+ PE+ D + GR+
Sbjct: 314 VILNSL-----NGCKWAFKE--GDVAVLSTPLPESDEDHEDAGRV 351
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 246 (91.7 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 60/150 (40%), Positives = 83/150 (55%)
Query: 261 KASLIFCTASSS-YKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
+A ++F T SSS KL S +VIDEAAQ E PL L + +LVGD Q
Sbjct: 915 EAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAAR-CVLVGDPQQ 973
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
LPA V S +G + RSLFER G LL++QYRMHP I FP+ YFY+ ++ D+
Sbjct: 974 LPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLTDSE 1033
Query: 380 TVRKRSYEKQFLPGPMYGPYAFINVFGGRE 409
+V + ++ + + PY F ++ GRE
Sbjct: 1034 SV-STAPDEIYYKDSVLKPYLFFDISHGRE 1062
Score = 96 (38.9 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 32/107 (29%), Positives = 58/107 (54%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKA-PFAEV-VALEDSKPYGAIL 58
++ +P F+S+ +Y F L EE RAQL+S+ E++++A + +V + + + G
Sbjct: 418 LQSVPERFESMDEYVRVFEPLLFEECRAQLYSTWEELAEANSYMKVRIKFIERRERG--W 475
Query: 59 YDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRM 105
YDV ++ N K +K GD+ VL++ PE+ + VGR+
Sbjct: 476 YDVILNS-----VNECKWAFKE--GDVAVLSNPVPESEGEHDDVGRV 515
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 266 (98.7 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 67/196 (34%), Positives = 107/196 (54%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A++IF T S+S + + +++DE+ Q E S IPL + I+ ILVGD QLP
Sbjct: 1709 ATIIFATLSASGSKPIRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPLQLP 1768
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+ SS S + SLFERLS + +L+ QYRMHP+IS FP++ FY++++LD V
Sbjct: 1769 PTIFSSESAKNGLNISLFERLSKV-LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDGDNV 1827
Query: 382 RKRSYEKQ-FLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTW 440
+ Y + F YGP F +V +EE + S +N +E+++V ++ L + P+
Sbjct: 1828 KSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLVQDYPECK 1887
Query: 441 AVTSNIVRFKNLADNE 456
+ I+ L +E
Sbjct: 1888 KFSFGIITPYKLQKSE 1903
Score = 44 (20.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 SVSQYFESFVFPLLEETRAQLFSSM 34
S S YF F F LL + + +++S+
Sbjct: 32 SSSSYFSYFSFSLLSKLTSTIYNSI 56
Score = 41 (19.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 7 SFQSVSQYFESFVFPLL-EETRAQL---FSSMEKVS 38
S+ S+ F + + PL+ EE RAQL F+ +E VS
Sbjct: 1383 SYSDQSE-FVNLMKPLIVEEYRAQLEGDFNEIEGVS 1417
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 265 (98.3 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 67/197 (34%), Positives = 105/197 (53%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL 320
+AS++F T S S + +++DE+ Q E S IPL + I+ ILVGD QL
Sbjct: 1357 RASIVFSTLSGSGSETVKNNFRADIILVDESTQSTEPSSIIPLCIGNIEKLILVGDPLQL 1416
Query: 321 PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPT 380
P + S+ S E SLFERLS + +L +QYRMHP+IS FP++ FY +++LD
Sbjct: 1417 PPTIFSTESAENGLNISLFERLSKV-LPVEMLHVQYRMHPTISRFPSNQFYRDRLLDGDN 1475
Query: 381 VRKRSYEKQ-FLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKT 439
V+ Y + F YGP F +V +EE + S +N +E+++V ++ L + P+
Sbjct: 1476 VKSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLVQDYPEC 1535
Query: 440 WAVTSNIVRFKNLADNE 456
+ I+ L +E
Sbjct: 1536 KKFSFGIITPYKLQKSE 1552
Score = 42 (19.8 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAP 41
+PL Q+VS Y +S ++P L QL ++ +S P
Sbjct: 260 LPLPNQTVSNYIKS-LYPKLGVLLTQLNETIN-LSPTP 295
Score = 42 (19.8 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 180 SFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNS 239
+F + L + +N ++D +E DED I Y L+ S + ++ E
Sbjct: 359 TFFQRNDLLYYNNNNNNKDEDEDEDEGEDEDEDDIIKRNIYQLYSDYSNLNFLI-EFSFF 417
Query: 240 FKEL 243
FK L
Sbjct: 418 FKRL 421
Score = 41 (19.5 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLL-EETRAQLFSSMEKVSKAPFAE 44
++ + S+ + +Y + + PL+ EE R QL +++ +E
Sbjct: 1018 IRNLKSSYSNHEEYMD-LMKPLIVEEYRKQLAGEFDEIEGVSISE 1061
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 266 (98.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 67/196 (34%), Positives = 107/196 (54%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A+++F T S+S + + +++DE+ Q E S IPL + I+ ILVGD QLP
Sbjct: 1510 ANIVFSTLSASGSGSVRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPLQLP 1569
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+ SS S E SLFERLS + +L+ QYRMHP+IS FP++ FY++++LD V
Sbjct: 1570 PTIFSSGSAENGLNISLFERLSKV-LPVEMLNTQYRMHPTISRFPSNQFYKDRLLDGDNV 1628
Query: 382 RKRSYEKQ-FLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNLNLEVPKTW 440
+ Y + F YGP F +V +EE + S +N +E+++V ++ L + P+
Sbjct: 1629 KSLVYNQHNFHSDIKYGPIRFYDVIDSKEESGKRSLKNKLEITMVFTLIKKLVQDYPECK 1688
Query: 441 AVTSNIVRFKNLADNE 456
+ I+ L +E
Sbjct: 1689 KFSFGIITPYKLQKSE 1704
Score = 40 (19.1 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 7 SFQSVSQYFESFVFPLL-EETRAQLFSSMEKVSKAPFAE 44
S+ S+ F + + PL+ EE RAQL +++ +E
Sbjct: 1183 SYSDQSE-FVNLMKPLIVEEYRAQLEGDFDEIEGISISE 1220
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 240 (89.5 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 59/171 (34%), Positives = 92/171 (53%)
Query: 261 KASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
+A+++F T S S L + + ++IDEAAQ E + IPL C Q LVGD Q
Sbjct: 461 EAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQ-VFLVGDPKQ 519
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
LPA V S+V+ ++ +G S+FERL G+ +L QYRMHP I FP+ FYE + D
Sbjct: 520 LPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGS 579
Query: 380 TVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILL 430
+ ++ + + +GP+ F ++ G+E + + V + V +LL
Sbjct: 580 DIEAQT-TRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLL 629
Score = 54 (24.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 7 SFQSVSQYFESFVFPLLEETRAQLFSSME 35
+++ V YFE+F L EE +AQ+ + +
Sbjct: 53 TYKDVDDYFETFEPLLFEEVKAQILQNKD 81
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 232 (86.7 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 247 SAMNMGLLKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQL 305
S + ++ +A ++ T S S L + ++IDEAAQ E+ + IP+Q
Sbjct: 548 STQDTSSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQH 607
Query: 306 PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFF 365
C + +LVGD QLPA + S ++ + + +SLF+RL +S H+L+ QYRMH I F
Sbjct: 608 GC-KKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQEK-NSPHMLTTQYRMHSLIRAF 665
Query: 366 PNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVF-------GGREEFIEHSCR 417
P+ +FY++ +LD P + R+ + P +GP F ++ GG F EH C+
Sbjct: 666 PSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK 722
Score = 59 (25.8 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAE 44
+K + +SF + Y ++ L EE RAQL S+E+ K +E
Sbjct: 63 LKPVKVSFNNEEDYITTYEPLLFEECRAQLERSIEEGEKDDTSE 106
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 240 (89.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 75/249 (30%), Positives = 131/249 (52%)
Query: 185 FETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELN 244
+++++ + + EDLE+ S + SI++ + L E +K ++L + + +E
Sbjct: 1414 YDSIIKKRDSLREDLEKFRSTGKNS----SILEAQ--LREI-TKQKNMLEQSLDDMRERQ 1466
Query: 245 LPSAMNMGLLK----DFCFTKASLIFCTASSS-YKLHSVAMEQLKFLVIDEAAQLKESES 299
+ N+ +LK + +A ++ T S+S ++L A + ++IDEAAQ E S
Sbjct: 1467 RSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSS 1526
Query: 300 AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKH--LLSMQYR 357
IPL+ C + ++VGD QLP V S S + + +SL+ R+ + H++ LLS+QYR
Sbjct: 1527 IIPLKYGC-ESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRM-FKQHNESACLLSIQYR 1584
Query: 358 MHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCR 417
M+P IS FP+ +FY +K+LD P + + + + P G Y F NV G S
Sbjct: 1585 MNPEISRFPSKFFYNSKLLDGPNMSAVT-SRPWHEDPQLGIYRFFNVHGTEAFSNSKSLY 1643
Query: 418 NMVEVSVVM 426
N+ E S ++
Sbjct: 1644 NVEEASFIL 1652
Score = 48 (22.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 5 PLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKP 53
PL+ +SVS+ F++F L R + F + V +A V L D P
Sbjct: 484 PLNIKSVSESFKNFWVYLQNVFREEKFFMVRIVFRA--CSTVCLIDKLP 530
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 229 (85.7 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 72/246 (29%), Positives = 108/246 (43%)
Query: 197 EDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKD 256
+DL E D I + YT E + + ++ F E + N+ +
Sbjct: 1524 KDLAERLKQQEDNKLRNEITKLNYT-REKYNNDLKLAKDEERRFHEQYSNTKRNLYIN-- 1580
Query: 257 FCFTKASLIFCTASSS-YKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVG 315
++ +I T S S Y A + +++DEAAQ E + IPL+ ++ ILVG
Sbjct: 1581 -IIGRSQIILSTLSGSGYDYLFTATKNFDLVIVDEAAQAVELSTLIPLRHD-VKKCILVG 1638
Query: 316 DECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
D QLP S V+ + + SLF+RL G + +L QYRMHP IS FP+ FY ++
Sbjct: 1639 DPQQLPPTTISKVATKFQYEISLFQRLMNCGMAPTVLKTQYRMHPMISKFPSKIFYRGEL 1698
Query: 376 LDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNLN 433
D VR+ + +GP F ++F E S RN EV + I+ L
Sbjct: 1699 EDGKNVREYKQDYYNDSASRFGPLVFYDLFDKHGEVRSSFFSLRNPTEVKLAKLIVDQLI 1758
Query: 434 LEVPKT 439
P T
Sbjct: 1759 SNYPNT 1764
Score = 57 (25.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEK 36
+K +P +F + Y + F L+EE RAQ+ ++++
Sbjct: 1157 LKPVPGTFDDLKHYIDIFQPLLIEEFRAQVIRNLDE 1192
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 229 (85.7 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 75/233 (32%), Positives = 113/233 (48%)
Query: 209 EDFSQSIVDIK-YTLHESRSKCH-SVLRELWNSFKELNLPSAMN-MGLLKDF---CFTKA 262
ED S+ + + L S +K L +L N EL++ N + L + KA
Sbjct: 520 EDVESSVSHLALHNLVNSNAKGELKKLIKLKNQVGELSVADTNNYLKLSRSSEMKVLNKA 579
Query: 263 SLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPA 322
++ CT + ++ + K ++IDE+ Q E E IP+ + + ILVGD QL
Sbjct: 580 EVVCCTCVGAAD-RRLSQFRFKTVLIDESTQASEPEVLIPI-VKGAKQVILVGDHQQLGP 637
Query: 323 MVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVR 382
++ + +A +SLFERL +LGH L +QYRMHP +S FP++ FYE + + T
Sbjct: 638 VILDKKAADAGLKQSLFERLVFLGHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSD 697
Query: 383 KRSYEKQFLPGPMYG-PYAFINVFGGREEFIE--HSCRNMVEVSVVMKILLNL 432
R E+ P P+ P F +G REE +S N VE V KI+ L
Sbjct: 698 DRLIEESTFPWPVIDTPMMFWANYG-REELSASGNSYLNRVEAMNVEKIITKL 749
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 229 (85.7 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 75/233 (32%), Positives = 113/233 (48%)
Query: 209 EDFSQSIVDIK-YTLHESRSKCH-SVLRELWNSFKELNLPSAMN-MGLLKDF---CFTKA 262
ED S+ + + L S +K L +L N EL++ N + L + KA
Sbjct: 520 EDVESSVSHLALHNLVNSNAKGELKKLIKLKNQVGELSVADTNNYLKLSRSSEMKVLNKA 579
Query: 263 SLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPA 322
++ CT + ++ + K ++IDE+ Q E E IP+ + + ILVGD QL
Sbjct: 580 EVVCCTCVGAAD-RRLSQFRFKTVLIDESTQASEPEVLIPI-VKGAKQVILVGDHQQLGP 637
Query: 323 MVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVR 382
++ + +A +SLFERL +LGH L +QYRMHP +S FP++ FYE + + T
Sbjct: 638 VILDKKAADAGLKQSLFERLVFLGHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSD 697
Query: 383 KRSYEKQFLPGPMYG-PYAFINVFGGREEFIE--HSCRNMVEVSVVMKILLNL 432
R E+ P P+ P F +G REE +S N VE V KI+ L
Sbjct: 698 DRLIEESTFPWPVIDTPMMFWANYG-REELSASGNSYLNRVEAMNVEKIITKL 749
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 237 (88.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 67/196 (34%), Positives = 100/196 (51%)
Query: 255 KDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPC--IQHAI 312
K +S+ F T S+S + + +++DEA Q E+ IPL L ++ I
Sbjct: 3665 KKMILEHSSICFSTLSASGSNLVQSSFKPNVVIVDEATQSCETSCIIPLSLGAKSMKKLI 3724
Query: 313 LVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYE 372
LVGD QLP + S S G SLFERLS + +L++QYRMHP IS FP+S FY
Sbjct: 3725 LVGDPVQLPPTIFSKESIHCGLGISLFERLSKV-LPVSMLNVQYRMHPLISKFPSSQFYH 3783
Query: 373 NKILDAPTV-RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLN 431
+ + D V +Y +F YG F +V REE + S +N +E+++V ++
Sbjct: 3784 DILKDGDNVVSSDAYSLRFHENQDYGAIRFFDVTDSREERGKTSIKNQLEITMVFTLIKK 3843
Query: 432 LNLEVPKTWAVTSNIV 447
L + P+T + IV
Sbjct: 3844 LTQDHPETKQYSFGIV 3859
Score = 48 (22.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 177 TVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLREL 236
T+I F + F+ + ++ M S + S+ ++ +S D+ L+ SK +L ++
Sbjct: 2097 TLIEFNNFFQRMHLKEFMDS-----ISSYGQNDQVDES--DVSRRLNNVHSK--QIL-DI 2146
Query: 237 WNSFKELNLPSAMNMGLLKDFCFT 260
+ + E++ N+ L+KDF F+
Sbjct: 2147 -SRYLEMSATVDTNVNLIKDFIFS 2169
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 209 EDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDF 257
++FS S+ K L E S HS LR L F EL+ LLKDF
Sbjct: 761 QEFS-SLFQRKL-LREKLSSTHSTLRSLL--FSELSNHHNTFPYLLKDF 805
Score = 46 (21.3 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 138 EFVRERFKCTAAPLRSCIFN-LGTH------LPKSYIGEDNFQVLGT--VISFLDSFE-- 186
+ +RE+ T + LRS +F+ L H L K +I +D + T +++F FE
Sbjct: 770 KLLREKLSSTHSTLRSLLFSELSNHHNTFPYLLKDFINKD----ISTRPIVNFTFQFEGQ 825
Query: 187 TLLFQD-NMGSEDL 199
TL +G+ED+
Sbjct: 826 TLSIPYFKIGTEDI 839
Score = 42 (19.8 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 161 HLPKSYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKY 220
HL ++ I +NF + F+DS + D + D+ S ++ S+ I+DI
Sbjct: 2093 HLHRTLIEFNNFFQRMHLKEFMDSISSYGQNDQVDESDV----SRRLNNVHSKQILDISR 2148
Query: 221 TLHES 225
L S
Sbjct: 2149 YLEMS 2153
Score = 42 (19.8 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 31/126 (24%), Positives = 49/126 (38%)
Query: 125 DAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDS 184
D E S +K V +R K + SCI +LP +D F + + F +
Sbjct: 1998 DHENSFYILKNIFVHVDDR-KRMIDSIDSCIGLYPNYLPSLKYLKD-F-INNYPMEFREY 2054
Query: 185 FETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELN 244
L+ Q DL ++ DFS S+ Y + + H L E N F+ ++
Sbjct: 2055 SMKLVVQRERTRMDLRKVLG-----DFSNSLNPQIYKEIIAHAHLHRTLIEFNNFFQRMH 2109
Query: 245 LPSAMN 250
L M+
Sbjct: 2110 LKEFMD 2115
Score = 41 (19.5 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 155 IFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQ 191
+F LG+ L SY G + L F DS E++ +
Sbjct: 563 LFRLGSMLNNSYTG---IEKLSRDFIFQDSTESITIE 596
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 210 DFSQSIVDIKYTLHESRSK 228
DF+ + + KY L ES+ +
Sbjct: 34 DFNDELENAKYVLAESKDE 52
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 227 (85.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 65/173 (37%), Positives = 92/173 (53%)
Query: 265 IFCTASSSYKLHSV-AMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
I C+ S H V A +KF ++IDEA Q E S IPL+ + I+VGD QLP
Sbjct: 1564 IICSTLSG-SAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLP 1621
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP-- 379
V S + + +SLF R+ S +LL +QYRMHPSIS FP+S FY+ ++ D P
Sbjct: 1622 PTVLSGAASNFKYNQSLFVRMEK-NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM 1680
Query: 380 -TVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKIL 429
+ KR + Q P PY F ++ GR+E S NM E+ V ++++
Sbjct: 1681 DILNKRPWH-QLEP---LAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELV 1729
Score = 51 (23.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 124 KDAEVSKVEIKTFLEFVRERFKCTAAPLRSCIFNLGTHLPKSYIGED-NFQVLGTVISFL 182
KD + ++ +E +++ FK P+ +N HL KSY + +F + G + FL
Sbjct: 312 KDVFIEYFQVPKNVESLKKTFKFPLEPIFKMWYN---HLSKSYHDKPLDFLLRGLTM-FL 367
Query: 183 DSF 185
+ F
Sbjct: 368 NKF 370
Score = 39 (18.8 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 8 FQSVSQYFESFVFPLLE-ETRAQLFSSMEKVSKAPFAEVV----ALEDSKP-YGAILYDV 61
F S + Y + + PLL E+ L SS ++ PF+ +V A+ D Y ++ V
Sbjct: 1147 FNSPADY-QKVMKPLLLLESWQGLCSSRDREDYKPFSIIVGNRTAVSDFYDVYASVAKQV 1205
Query: 62 KVDC 65
DC
Sbjct: 1206 IQDC 1209
>UNIPROTKB|E1BQD2 [details] [associations]
symbol:C4H4orf21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AADN02009328
IPI:IPI00577016 Ensembl:ENSGALT00000019715 Uniprot:E1BQD2
Length = 913
Score = 210 (79.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 71/224 (31%), Positives = 108/224 (48%)
Query: 218 IKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHS 277
+ Y+LH + L+EL KE +L A M + K K TA K+
Sbjct: 548 LPYSLHAGSGNENEQLKELLALMKE-DLAPAEKMYVRKSIERHKLGTNK-TALQQVKVVG 605
Query: 278 VA--------MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPAMVES 326
V ++ LKF +V+DE +Q+ E S +P+ + C + +LVGD QLP ++
Sbjct: 606 VTCAACPFPCLDTLKFPVVVLDECSQMTEPTSLLPIARFQC-EKLVLVGDPKQLPPTIQG 664
Query: 327 SVS-GEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRS 385
S S E ++LF+RL +GH LL QYR HP+IS N FYE ++D + ++RS
Sbjct: 665 SESIHEKGLEQTLFDRLCLMGHKTILLRTQYRCHPAISAIANELFYEGNLIDGVSEKERS 724
Query: 386 YEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+LP F +V G + ++S NM EV +K +
Sbjct: 725 PLLDWLP-----TLCFYSVNGLEQIERDNSFYNMAEVHFTVKFI 763
Score = 51 (23.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 6 LSFQSVSQYFESFVFPLLE---ETRAQLFSSMEKVSKAPFAE-VVALEDSKPYGAILYDV 61
+S +++ +YF PL+ + + S +++K F ++L K YG++ +V
Sbjct: 362 ISLRNMEEYFNPSTLPLIPYLLKMNSDSEKSTRRINKRKFIPPAMSLVGKKTYGSVSTEV 421
Query: 62 KVD 64
++
Sbjct: 422 AME 424
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVS----KAPFAEVVALEDSK 52
IP FQS Y + F L E LF +++ K + +LED +
Sbjct: 107 IPTEFQSHVHYRQVFKAALTEHLNIMLFELSQRLHSALLKVDISSYTSLEDEQ 159
>UNIPROTKB|Q6ZU11 [details] [associations]
symbol:Q6ZU11 "Uncharacterized protein FLJ44066"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0016021 GO:GO:0008270
eggNOG:COG1112 UniGene:Hs.713663 EMBL:AK126054 EMBL:AL137700
IPI:IPI00300207 IPI:IPI00880006 PIR:T46441 RefSeq:NP_060862.3
UniGene:Hs.380346 ProteinModelPortal:Q6ZU11 SMR:Q6ZU11
PhosphoSite:Q6ZU11 DMDM:74711848 PaxDb:Q6ZU11 PRIDE:Q6ZU11
GeneID:55345 KEGG:hsa:55345 CTD:55345 HPA:HPA030706
neXtProt:NX_Q6ZU11 PharmGKB:PA144596502 HOGENOM:HOG000155510
InParanoid:Q6ZU11 PhylomeDB:Q6ZU11 GenomeRNAi:55345 NextBio:59679
ArrayExpress:Q6ZU11 Bgee:Q6ZU11 Genevestigator:Q6ZU11
Uniprot:Q6ZU11
Length = 926
Score = 205 (77.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 54/157 (34%), Positives = 86/157 (54%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPAMVESS-VSGEAYFG 335
M LKF +V+DE +Q+ E S +P+ + C + ILVGD QLP ++ S + E
Sbjct: 620 MNDLKFPVVVLDECSQITEPASLLPIARFEC-EKLILVGDPKQLPPTIQGSDAAHENGLE 678
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH LL QYR HP+IS N FY+ +++ T +RS ++LP
Sbjct: 679 QTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLP--- 735
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F NV G + ++S N+ E + +K++ +L
Sbjct: 736 --TLCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSL 770
Score = 56 (24.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKA 40
IP FQS + Y ++F L+E LF + + KA
Sbjct: 108 IPAVFQSPAHYKQTFTSCLIEHLNILLFGLAQNLQKA 144
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 212 (79.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 590 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 647
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 648 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 707
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 708 ADR-LKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRL 760
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 212 (79.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 60/174 (34%), Positives = 91/174 (52%)
Query: 260 TKASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDE 317
+ A ++ CT + + +LKF ++IDE+ Q E E IPL L C Q +LVGD
Sbjct: 589 SNADVVCCTCVGA---GDPRLAKLKFRNVLIDESTQSAEPECMIPLVLGCKQ-VVLVGDH 644
Query: 318 CQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILD 377
QL ++ + + +A +SLFERL LG + L++QYRMHP +S FP++ FYE + +
Sbjct: 645 KQLGPVIMNKKAAKAGLNQSLFERLVKLGLTPIRLNVQYRMHPCLSEFPSNMFYEGSLQN 704
Query: 378 APTVRKRSYEKQFLPGPMYG-PYAFINVFGGREEFIEH-SCRNMVEVSVVMKIL 429
T+++R P P+ P F + G E S N E S V K++
Sbjct: 705 GVTIQQRLRRDVDFPWPVADMPMMFWSNLGNEEISASGTSYLNRTEASNVEKLV 758
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 212 (79.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 609 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 666
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 667 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 726
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 727 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 779
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 212 (79.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 616 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 673
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 674 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 733
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 734 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 786
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 212 (79.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 619 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 676
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 677 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 736
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 737 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 789
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 212 (79.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 620 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 677
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 678 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 737
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 738 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 790
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 212 (79.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 621 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 678
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 679 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 738
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 739 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 791
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 212 (79.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 63/174 (36%), Positives = 85/174 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 622 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 679
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 680 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 739
Query: 382 RKRSYEKQF-LPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R +K F P F V G+EE S N E + V KI L
Sbjct: 740 ADR-VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 792
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 212 (79.7 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 58/170 (34%), Positives = 88/170 (51%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + L ++ + + ++IDE+ Q E E IPL L ++ +LVGD CQL
Sbjct: 630 ADVICCTCVGAADLR-LSNFRFRQVLIDESTQATEPECLIPLVLG-VKQVVLVGDHCQLG 687
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
++ + A +SLFERL LG L +QYRMHP++S FP++ FYE + + T+
Sbjct: 688 PVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI 747
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKIL 429
+R P P+ F V G+EE S N E + V K++
Sbjct: 748 IERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLV 797
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 207 (77.9 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 62/172 (36%), Positives = 88/172 (51%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
A +I CT + + +LKF ++IDE+ Q E E IPL L C Q +LVGD Q
Sbjct: 563 ADVICCTCVGA---GDPRLAKLKFRTVLIDESTQSAEPECMIPLVLGCKQ-VVLVGDHQQ 618
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
L ++ + + +A +SLFERL LG S L++QYRMHP +S FP++ FYE + +
Sbjct: 619 LGPVIMNKKAAKAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGI 678
Query: 380 TVRKRSYEKQFLPGPMY-GPYAFINVFGGREEFIEH-SCRNMVEVSVVMKIL 429
T R + P P+ P F + G E S N E + V KI+
Sbjct: 679 TSFDRLRREVDFPWPILDSPMMFWSNLGNEEISASGTSYLNRTEAANVEKIV 730
>UNIPROTKB|E1BG37 [details] [associations]
symbol:E1BG37 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 EMBL:DAAA02016483 IPI:IPI00912094
Ensembl:ENSBTAT00000017567 OMA:HKLGTNK Uniprot:E1BG37
Length = 933
Score = 203 (76.5 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 54/157 (34%), Positives = 85/157 (54%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPAMVESS-VSGEAYFG 335
M LKF +V+DE +Q+ E S +P+ + C + ILVGD QLP ++ S + E
Sbjct: 621 MNDLKFPVVVLDECSQMTEPASLLPIARFEC-EKLILVGDPKQLPPTIQGSDAAHENGLE 679
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH LL QYR HP+IS N FYE +++ + +RS ++LP
Sbjct: 680 QTLFDRLCLMGHKPILLRTQYRCHPTISAIANDLFYEGNLMNGISETERSPLLEWLP--- 736
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F NV G + +S N+ E + +K++ +L
Sbjct: 737 --TLCFYNVKGLEQIERGNSFHNVAEAAFTLKLIQSL 771
Score = 51 (23.0 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKA 40
IP FQS + Y + F L E LF +++ KA
Sbjct: 109 IPAVFQSPAHYKQVFTSCLTEHLNILLFGLAQRLHKA 145
>UNIPROTKB|F1PCI1 [details] [associations]
symbol:C4orf21 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AAEX03016829
Ensembl:ENSCAFT00000018553 Uniprot:F1PCI1
Length = 1024
Score = 201 (75.8 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 53/157 (33%), Positives = 84/157 (53%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQL-PAMVESSVSGEAYFG 335
M LKF +V+DE +Q+ E S +P+ + C + ILVGD QL P + S + E
Sbjct: 719 MNDLKFPVVVLDECSQITEPASLLPIARFEC-EKLILVGDPKQLSPTIQGSDAAHENGLE 777
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH LL QYR HP+IS N FYE ++D + +R ++LP
Sbjct: 778 QTLFDRLCLMGHKPVLLRTQYRCHPAISDISNDLFYEGNLVDGISETERGPLLEWLP--- 834
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F N+ G + ++S N+ E + +K++ +L
Sbjct: 835 --TLCFYNIKGPEQIERDNSFHNVAEAAFTLKLIQSL 869
Score = 54 (24.1 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKA 40
IP FQS + Y + F L+E LF +++ KA
Sbjct: 207 IPAVFQSPAHYKQIFTSCLIEHLNILLFGLAQRLHKA 243
>UNIPROTKB|G5EA02 [details] [associations]
symbol:C4orf21 "Uncharacterized protein C4orf21"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
EMBL:CH471057 InterPro:IPR018838 Pfam:PF10382 UniGene:Hs.713663
RefSeq:NP_060862.3 UniGene:Hs.380346 GeneID:55345 KEGG:hsa:55345
CTD:55345 GenomeRNAi:55345 NextBio:59679 EMBL:AC106864
EMBL:AC023886 PRIDE:G5EA02 Ensembl:ENST00000505019 HGNC:HGNC:25654
OMA:NTYESSG ArrayExpress:G5EA02 Bgee:G5EA02 Uniprot:G5EA02
Length = 2104
Score = 205 (77.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 54/157 (34%), Positives = 86/157 (54%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPAMVESS-VSGEAYFG 335
M LKF +V+DE +Q+ E S +P+ + C + ILVGD QLP ++ S + E
Sbjct: 1798 MNDLKFPVVVLDECSQITEPASLLPIARFEC-EKLILVGDPKQLPPTIQGSDAAHENGLE 1856
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH LL QYR HP+IS N FY+ +++ T +RS ++LP
Sbjct: 1857 QTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLP--- 1913
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F NV G + ++S N+ E + +K++ +L
Sbjct: 1914 --TLCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSL 1948
Score = 56 (24.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 IPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKA 40
IP FQS + Y ++F L+E LF + + KA
Sbjct: 1286 IPAVFQSPAHYKQTFTSCLIEHLNILLFGLAQNLQKA 1322
Score = 41 (19.5 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 56 AILYDVKVDCWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGN 115
AILYD K C + F + + PGD L +D T +++ G + +++N
Sbjct: 35 AILYDDKGACLESLFL----KCLEVKPGDDLE-SDRYLITVEEVKVAGAIGIVKQNVN-K 88
Query: 116 EIKEKECR 123
E E R
Sbjct: 89 EAPELNSR 96
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 204 (76.9 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 58/177 (32%), Positives = 92/177 (51%)
Query: 261 KASLIFCTA--SSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDEC 318
KA ++ CT + +L + + + ++IDE+ Q E E IP+ + + ILVGD
Sbjct: 546 KADVVCCTCVGAGDKRLDT----KFRTVLIDESTQASEPECLIPI-VKGAKQVILVGDHQ 600
Query: 319 QLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDA 378
QL ++ + +A +SLFERL LGH L +QYRM+P +S FP++ FYE + +
Sbjct: 601 QLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNG 660
Query: 379 PTVRKRSYEKQFLPGPMYG-PYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
T+ +R+ P P+ G P F +G REE + S N +E +I+ L
Sbjct: 661 VTIEQRTVPNSKFPWPIRGIPMMFWANYG-REEISANGTSFLNRIEAMNCERIITKL 716
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 217 (81.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 71/185 (38%), Positives = 92/185 (49%)
Query: 262 ASLIFCTASSSYKL------HSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVG 315
A +I CT S+S + + E ++IDEA+Q KE+E+ IP+ C ILVG
Sbjct: 1928 AHVICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRC-PSVILVG 1986
Query: 316 DECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKH-------LLSMQYRMHPSISFFPNS 368
D QLP V S + E F +SL RL H + LLSMQYRMHP I FP+
Sbjct: 1987 DPNQLPPTVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMHPDICEFPSK 2046
Query: 369 YFYENKIL-DAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMK 427
Y Y + + D T +KR L P + PY +V GRE S N EVS+V
Sbjct: 2047 YIYNSALKNDCETAQKRCS----LSWP-FKPYKVFDVMDGRETKERDSFINHKEVSLV-G 2100
Query: 428 ILLNL 432
+LL L
Sbjct: 2101 LLLKL 2105
Score = 53 (23.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLL 23
+K++P++F S +YF + ++PLL
Sbjct: 1520 LKEVPVNFSSYLEYFNT-LYPLL 1541
Score = 39 (18.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 545 FQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTE 583
+ +KH + + G+N L + EV+ V+G G E
Sbjct: 2120 YNAQKHRILDAIKTSGINKQLQV----EVDTVDGFQGRE 2154
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 214 (80.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 58/172 (33%), Positives = 90/172 (52%)
Query: 260 TKASLIFCTASSS-YKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDEC 318
++A ++ T S + + + + + ++IDEAAQ E + IPL+ + ILVGD
Sbjct: 1550 SEAHVLCATLSGAGHDMFKSLQVEFETVIIDEAAQCVELSALIPLKYGASK-CILVGDPK 1608
Query: 319 QLPAMVESSVSGEAYFGRSLFERLSYLGHSK-HLLSMQYRMHPSISFFPNSYFYENKILD 377
QLP V S + + +SLF R+ K HLL QYRMHP IS +P+ FYE + D
Sbjct: 1609 QLPPTVLSQSAARYGYDQSLFVRMQQNHPGKVHLLDCQYRMHPEISLYPSKEFYEGLLAD 1668
Query: 378 APTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIE-HSCRNMVEVSVVMKI 428
+ K ++ + P+ GPY F +V G +E S N E++V ++I
Sbjct: 1669 GSDMAKLR-QQPWHDNPLLGPYRFFDVEGIQERGSRGQSLVNTNEINVAIQI 1719
Score = 45 (20.9 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL--EETRAQLFSSMEKVSKAPF 42
K++ S+ + Y E+F FP+L E R+ + S E +K PF
Sbjct: 1137 KEVAKSYTNPVDYRETF-FPMLVNEAWRSFVTSKDESTAK-PF 1177
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 203 (76.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL-PAMVESSVSGEAYFGR 336
+ Q +F ++IDE+ Q E E IPL + Q ILVGD QL P ++ V +A +
Sbjct: 695 LSQFRFPHILIDESTQASEPECLIPLMMGAKQ-VILVGDHRQLGPVLLCKKVV-DAGLSQ 752
Query: 337 SLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM- 395
SLFERL LGH L++QYRMHPS++ FP++ YE +++ + R + +F P P
Sbjct: 753 SLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKF-PWPQP 811
Query: 396 YGPYAFINVFGGRE-EFIEHSCRNMVEVSVVMKIL 429
P F N G E S N E S+ KI+
Sbjct: 812 KDPMFFFNCTGSEEISSSGTSFINTTEASICEKIV 846
>RGD|2322000 [details] [associations]
symbol:LOC100363957 "hypothetical protein LOC100363957"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 RGD:2322000
GO:GO:0008270 GeneTree:ENSGT00550000074391 IPI:IPI00777941
Ensembl:ENSRNOT00000014695 Uniprot:F1M404
Length = 919
Score = 205 (77.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 54/157 (34%), Positives = 84/157 (53%)
Query: 280 MEQLKF--LVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPAMVESSVSGEAY-FG 335
M LKF +V+DE +Q+ E S +P+ + C + ILVGD QLP ++ S +
Sbjct: 615 MNDLKFPVVVLDECSQMTEPASLLPIARFEC-EKLILVGDPKQLPPTIQGSDAAHGNGLE 673
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH L QYR HP IS N FYE +++ + R+RS ++LP
Sbjct: 674 QTLFDRLCLMGHKPIQLRTQYRCHPVISAIANDLFYEGNLVNGISERERSPVLEWLP--- 730
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F NV G + E+S N+ E + +K++ +L
Sbjct: 731 --TLCFYNVTGTEQVERENSFVNVAEAAFTLKLIRSL 765
Score = 44 (20.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 4 IPLSFQSVSQYFESFVFPLL-EETRAQLFSSMEKVSKA 40
IP FQS + Y + F ++ E LF +++ KA
Sbjct: 102 IPAVFQSPAHYRQIFTSSIIVEHLNILLFGLAQRLYKA 139
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 213 (80.0 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 70/250 (28%), Positives = 120/250 (48%)
Query: 193 NMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMG 252
N E + L + S++E + + +++ RS+ L E N +N
Sbjct: 1444 NERDELRKRLATESLEEKEITELEEKIRAINKKRSELAKKLDEQREKASIANRTKEINRR 1503
Query: 253 LLKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHA 311
++ ++A ++ T S S++ L + Q ++IDEA Q E + IPL+ C +
Sbjct: 1504 NIQARILSEAQVLCSTLSGSAHDLVANLSVQFDQVIIDEACQCLELSAIIPLRYGC-KKC 1562
Query: 312 ILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGH--SKHLLSMQYRMHPSISFFPNSY 369
I+VGD QLP V S + + +SLF R+ H S ++L +QYRMHP IS FP+S
Sbjct: 1563 IMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQK-NHPDSVYMLDVQYRMHPMISKFPSSE 1621
Query: 370 FYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEF-IEHSCRNMVEVSVVMKI 428
FY +K+ D + + + + + P PY F ++ G E+ + S N E V +++
Sbjct: 1622 FYNSKLKDGDGMLELN-TRPWHKDPPLTPYRFFDILGKHEKNELTRSLFNTDEAIVALQL 1680
Query: 429 LLNLNLEVPK 438
L +P+
Sbjct: 1681 TDKLMQLLPQ 1690
Score = 43 (20.2 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 100 QRVGRMWTFSEDINGNEIKEKECRKDAEVSKV-EIKTFLEFVRER 143
Q V ++W +S+ + G+ K E ++ ++K E+ L ER
Sbjct: 835 QIVEQLWKYSKKVKGHNNKLSESQRMMLMTKARELNEALVETMER 879
Score = 42 (19.8 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 112 INGNEIKEKECRKDAEVSKVE 132
I NEIK + KD E +K +
Sbjct: 567 IKFNEIKYNQANKDLESAKTQ 587
Score = 41 (19.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 50 DSKPYGAILYD-VKVDCWRNRFSNPGK---EPYKTLPGDILVLA--DAKPETASDLQR 101
D KP+ ++ VD + + F++ K + K D++VLA D + ASD++R
Sbjct: 1138 DEKPFELLIGSRTSVDGFFDVFASMEKTVLQDRKIGDSDLVVLALKDESLQHASDIRR 1195
>DICTYBASE|DDB_G0289529 [details] [associations]
symbol:DDB_G0289529 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002934
InterPro:IPR003593 Pfam:PF01909 SMART:SM00382
dictyBase:DDB_G0289529 GO:GO:0005524 EMBL:AAFI02000141
GO:GO:0017111 eggNOG:COG1112 GO:GO:0016779 RefSeq:XP_636183.1
ProteinModelPortal:Q54HF4 EnsemblProtists:DDB0219440 GeneID:8627170
KEGG:ddi:DDB_G0289529 InParanoid:Q54HF4 ProtClustDB:CLSZ2429765
Uniprot:Q54HF4
Length = 1677
Score = 210 (79.0 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 70/240 (29%), Positives = 107/240 (44%)
Query: 244 NLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303
N S+ + L+K AS++F T + S ++IDE+ Q E S IPL
Sbjct: 1294 NKNSSRRINLIKS-----ASIVFSTLAGSGSKAIFENFSPDIVLIDESTQSSEPTSIIPL 1348
Query: 304 QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSIS 363
L ++ ILVGD QLP + S + SLFERL+ L+ QYRMHP S
Sbjct: 1349 SLGSVKKLILVGDPVQLPPTIFSKQGADCGLKISLFERLAK-SIDVQFLNTQYRMHPVTS 1407
Query: 364 FFPNSYFYENKILDAPTVRKRSYEK-QFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEV 422
F + FY + D V SY +F P +GP F ++ ++ I+ S N E+
Sbjct: 1408 KFISEEFYNGTLKDGENVSIDSYNNCKFHFDPSFGPMKFFDLPKSNQKVIKKSIMNQDEI 1467
Query: 423 SVVMKILLNLNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLL 482
V ++ L + P+ ++ I+ L N+ L+ RS N N++ S +
Sbjct: 1468 DKVFTLIKELIEKYPECKKLSFGIITPYKLQMNQIKEQLN------RSEHHNLNISVSTI 1521
Score = 42 (19.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 23/94 (24%), Positives = 37/94 (39%)
Query: 92 KPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCTAAPL 151
K ET S + +G + + D N N K K + V + I E + C + +
Sbjct: 921 KNETIS-VHSIGTKKSNNNDNNNNNTKIKADYIYSYVDVISISPD-ETLNLILSCEPSKI 978
Query: 152 RSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSF 185
N L +Y GE +Q++ + F D F
Sbjct: 979 PLLKPNGIGELSDNYTGEKEYQIVNKPLIF-DDF 1011
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 195 (73.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/171 (35%), Positives = 83/171 (48%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + ++ + + ++IDEA Q E E IPL L Q +LVGD QL
Sbjct: 538 AHVICCTCVGAGD-RRISKYKFRSVLIDEATQASEPECMIPLVLGAKQ-VVLVGDHQQLG 595
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + A +SLFERL LG+S L +QYRMHP +S FP++ FYE + + T
Sbjct: 596 PVVMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTT 655
Query: 382 RKRSYEKQFLPGPMY-GPYAFINVFGGREEFIEH--SCRNMVEVSVVMKIL 429
+R P P F FG +EE S N E S KI+
Sbjct: 656 SERIARHVDFPWIQPDSPLMFYANFG-QEELSASGTSFLNRTEASTCEKIV 705
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 205 (77.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 72/251 (28%), Positives = 121/251 (48%)
Query: 197 EDLEELF--SHSVDEDFSQSIVDIKYTLHE---SRSKCHSVLRELWNSFKELNL-PSAMN 250
E+LE+ + V ED +++ ++E + K + + + KE++L
Sbjct: 1284 EELEKQIDVARDVAEDTKSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQ 1343
Query: 251 MGLLKDFCFTKASLIFCTASSSYKLHS-VAMEQLKF--LVIDEAAQLKESESAIPLQLPC 307
+LK +A ++ T S S H VA L F ++IDEAAQ E ++ IPL+
Sbjct: 1344 KAILK-----QADVVCATLSGSG--HDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGA 1396
Query: 308 IQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY-LGHSKHLLSMQYRMHPSISFFP 366
+ ILVGD QLP V S + + +SLF R+ + LLS+QYRMHP IS FP
Sbjct: 1397 -KKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFP 1455
Query: 367 NSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVM 426
+ FY++++ D + +++ + + P + Y +V G S N+ EV ++
Sbjct: 1456 SKKFYDSRLEDGDNMAEKTQQVWHV-NPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLV 1514
Query: 427 KILLNLNLEVP 437
++ L + P
Sbjct: 1515 NMVDELLNKFP 1525
Score = 46 (21.3 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 20/93 (21%), Positives = 44/93 (47%)
Query: 495 SHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMA 554
S+ +S + E++ + DE L FP F TG+ ++T ++++ H
Sbjct: 1499 SNTMSTYNLEEVEYLVNMVDELLNK--FPDVNF------TGRIGVITP--YRSQLHE--- 1545
Query: 555 KEQFYGVNNGLTLHTSREVEAVEGLGGTERYIL 587
+ + V G + ++ +++ V+G G E+ I+
Sbjct: 1546 LRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDII 1578
Score = 43 (20.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 87 VLADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKC 146
+LA+ + D+ R +++ ++ EI+++E R+ +S IK +R
Sbjct: 845 LLAEDLSDNEDDIDRKQGLFSLAKANKIPEIRQQERRQVQLLSNSTIKMHPSQIRMMTNR 904
Query: 147 TAAPLRSCIFNLGTHLPKSYIG-EDNFQVLGTVISF-------LDSFETL 188
A +++ +F T K + E Q V+ F +DSF+T+
Sbjct: 905 NVANVKARLFPSMTDFYKEILSWEPANQSPNPVLKFHKLDGKIIDSFKTV 954
>FB|FBgn0030354 [details] [associations]
symbol:Upf1 "Upf1" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS;IMP;NAS] [GO:0005737 "cytoplasm"
evidence=IEA;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0035195 "gene silencing by miRNA" evidence=IMP] [GO:0071456
"cellular response to hypoxia" evidence=IMP] [GO:0035145 "exon-exon
junction complex" evidence=IDA] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0071456
GO:GO:0004386 eggNOG:COG1112 GeneTree:ENSGT00550000074391 KO:K14326
OMA:MFYEGSL EMBL:AY061379 RefSeq:NP_572767.1 UniGene:Dm.3617
ProteinModelPortal:Q9VYS3 SMR:Q9VYS3 STRING:Q9VYS3 PaxDb:Q9VYS3
PRIDE:Q9VYS3 EnsemblMetazoa:FBtr0073596 GeneID:32153
KEGG:dme:Dmel_CG1559 UCSC:CG1559-RA CTD:5976 FlyBase:FBgn0030354
InParanoid:Q9VYS3 OrthoDB:EOG476HF1 PhylomeDB:Q9VYS3
GenomeRNAi:32153 NextBio:777131 Bgee:Q9VYS3 GermOnline:CG1559
Uniprot:Q9VYS3
Length = 1180
Score = 206 (77.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 61/171 (35%), Positives = 84/171 (49%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
A +I CT + + ++KF ++IDE+ Q E E +P+ L Q ILVGD CQ
Sbjct: 591 ADVICCTCVGA---GDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQ-LILVGDHCQ 646
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
L +V + A +SLFERL LG L +QYRMHP +S FP+++FYE + +
Sbjct: 647 LGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGV 706
Query: 380 TVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKI 428
R + F P P F V G+EE S N E + V KI
Sbjct: 707 CAEDRRLKLDF-PWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKI 756
Score = 37 (18.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 238 NSFKELNLPSAMNMGLLKDFCF 259
NS K++N L+ D CF
Sbjct: 194 NSLKDMNWDQEQWKPLIADRCF 215
>FB|FBgn0035842 [details] [associations]
symbol:CG7504 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005875 EMBL:AE014296 GO:GO:0006200
GO:GO:0016887 Gene3D:2.60.200.20 SUPFAM:SSF49879 eggNOG:COG1112
KO:K10706 GeneTree:ENSGT00580000081652 RefSeq:NP_001137907.1
UniGene:Dm.31993 ProteinModelPortal:B7Z0D7 SMR:B7Z0D7 STRING:B7Z0D7
PaxDb:B7Z0D7 EnsemblMetazoa:FBtr0273367 GeneID:38904
KEGG:dme:Dmel_CG7504 FlyBase:FBgn0035842 OMA:NRSKSCY
OrthoDB:EOG4DV42G GenomeRNAi:38904 NextBio:810939 Bgee:B7Z0D7
Uniprot:B7Z0D7
Length = 1676
Score = 195 (73.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 62/200 (31%), Positives = 100/200 (50%)
Query: 254 LKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAIL 313
+ C T+A++I T SS KL + ++ ++DEA Q E + +P++ + H +L
Sbjct: 1357 ISHMCVTRANIICTTLSSCVKLANY-VDFFDICIVDEATQCTEPWTLLPMRFG-LTHMVL 1414
Query: 314 VGDECQLPAMVESSVSGEAYFGRSLFERL------------SY-LGHSKHL-LSMQYRMH 359
VGD QLPA+V S + + S+F+R+ SY L H+K LS QYRMH
Sbjct: 1415 VGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYRMH 1474
Query: 360 PSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINV-FGGREEFIEH-SCR 417
P I +PN YFYE+++++A + P+ PY IN+ + ++ S
Sbjct: 1475 PEICRWPNQYFYEDQLINAECTAR-------FASPLI-PYCVINLKYTCDSNGAQNKSIS 1526
Query: 418 NMVEVSVVMKILLNLNLEVP 437
N E V K+L ++ +P
Sbjct: 1527 NNEEARFVAKLLTEMDKHMP 1546
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 182 (69.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 261 KASLIFCTASSSYK--LHSV----AMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILV 314
++ +I CT S+S L S ++ +++DEA Q E E+ IPL C +LV
Sbjct: 2170 ESDIICCTLSTSGGGLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRC-NKLVLV 2228
Query: 315 GDECQLPAMVESSVSGEAYFGRSLFERLS-YLGHS------KHL----LSMQYRMHPSIS 363
GD QLP ++S + E +G+SL RL +L + L L++QYRMHP I
Sbjct: 2229 GDPRQLPPTIKSIKAQEYGYGQSLMARLQRHLEEQVQNNLLRRLPVVQLTVQYRMHPDIC 2288
Query: 364 FFPNSYFYENKI-LDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEV 422
FP+SY Y+ + D T R + P + PY +V G EE + S N EV
Sbjct: 2289 LFPSSYIYDKTLKTDKATEENRCSSEW--P---FQPYLVFDVGDGHEERDKDSFSNPQEV 2343
Query: 423 SVVMKIL 429
+V++I+
Sbjct: 2344 KLVLEII 2350
Score = 57 (25.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLE----ETRAQLFSSMEKV 37
V +P+ FQ + YF +F FPL+ ET AQ + +K+
Sbjct: 1754 VASVPIRFQGYNDYFNTF-FPLMMLNAFETLAQEWVENQKM 1793
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 183 (69.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 55/173 (31%), Positives = 83/173 (47%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT SS+ ++ + + ++IDE+ Q E E + + + ++ +LVGD CQL
Sbjct: 584 ADVICCTCSSAADAR-LSKIRTRTVLIDESTQATEPEILVSI-MRGVRQLVLVGDHCQLG 641
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + A +SLFERL LG L +QYRMHP +S FP++ FY+ + + T
Sbjct: 642 PVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTE 701
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R P AF G EE S N E + V K++ L
Sbjct: 702 NDRHMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKL 754
Score = 46 (21.3 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 65 CWRNRFSNPGKEPYKTLPGDILVLADAKPETASDLQRVGRMWTFSEDINGNEIKE-KE 121
C R+R + PY TL + V+ A+ + L+ F +D+ ++K KE
Sbjct: 520 CARSREHSETTVPYLTLQHQLKVMGGAELQKLIQLKDEAGELEFKDDLRYMQLKRVKE 577
>CGD|CAL0001700 [details] [associations]
symbol:orf19.702 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006449 "regulation of translational termination"
evidence=IEA] InterPro:IPR003593 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00382 CGD:CAL0001700 GO:GO:0005524 GO:GO:0008270
GO:GO:0005622 GO:GO:0017111 eggNOG:COG1112 EMBL:AACQ01000183
EMBL:AACQ01000182 RefSeq:XP_711775.1 RefSeq:XP_711793.1
ProteinModelPortal:Q59PZ8 GeneID:3646609 GeneID:3646623
KEGG:cal:CaO19.702 KEGG:cal:CaO19.8321 Uniprot:Q59PZ8
Length = 1105
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/139 (34%), Positives = 70/139 (50%)
Query: 260 TKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
T+A ++ T + + S + ++ ++IDEA Q E + IPL LP ++ +LVGD+ Q
Sbjct: 783 TQAKVVLATPVVAGGIKS--LNNVRVVIIDEATQSSEPTTLIPLALPSVEKLVLVGDQKQ 840
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSK--HLLSMQYRMHPSISFFPNSYFYENKILD 377
L S + SLFER+ G K H+L QYRMHP IS FP + FY + D
Sbjct: 841 LSCF--SLIPN---LSLSLFERVLLNGTYKTPHMLDTQYRMHPEISEFPRTKFYGGLLKD 895
Query: 378 APTVRKRSYEKQFLPGPMY 396
R E + P+Y
Sbjct: 896 GIDANARQSEG-VISSPLY 913
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 173 (66.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 51/163 (31%), Positives = 83/163 (50%)
Query: 260 TKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
+++ +IF T ++ +++ +++DEA Q E+ + +PL LP I++ + VGDE Q
Sbjct: 791 SQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQ 850
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKH--LLSMQYRMHPSISFFPNSYFYENKILD 377
L SS S SLFER+ G K+ +L QYRMHP IS FP Y ++ D
Sbjct: 851 L-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKD 905
Query: 378 APTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMV 420
T ++++ PG + P F G E + + R++V
Sbjct: 906 GVTDEQKAW-----PGVQH-PLFFYQCDLGPESRVRSTQRDIV 942
>POMBASE|SPCC737.07c [details] [associations]
symbol:SPCC737.07c "DNA polymerase alpha-associated DNA
helicase A (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006273
"lagging strand elongation" evidence=ISO] [GO:0033203 "DNA helicase
A complex" evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISO] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISO] InterPro:IPR003593 SMART:SM00382
PomBase:SPCC737.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR eggNOG:COG1112 GO:GO:0006273
GO:GO:0043141 PIR:T41580 RefSeq:NP_588369.1
ProteinModelPortal:O94247 STRING:O94247 EnsemblFungi:SPCC737.07c.1
GeneID:2539412 KEGG:spo:SPCC737.07c HOGENOM:HOG000185831
OMA:ERTIFLE OrthoDB:EOG444PTN NextBio:20800576 GO:GO:0033203
Uniprot:O94247
Length = 660
Score = 167 (63.8 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 60/186 (32%), Positives = 90/186 (48%)
Query: 207 VDEDFSQSIVDIKYTLH-ESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLI 265
+ ED + I T + R + + +REL +++ + N+ + + ++
Sbjct: 314 ISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANI-------VSASKVV 366
Query: 266 FCTASSSYKLHSVAMEQLK---F--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL 320
FCT LH QLK F ++IDEA+Q E + IPL + IL GD QL
Sbjct: 367 FCT------LHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLL--GMNKVILAGDHMQL 418
Query: 321 PAMVESSVSGEAYFGRSLFERL--SYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDA 378
V+S Y S+FERL S K L++QYRMH IS FP+ FY++K++ A
Sbjct: 419 SPNVQSK---RPYI--SMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPA 473
Query: 379 PTVRKR 384
V+KR
Sbjct: 474 EEVKKR 479
>GENEDB_PFALCIPARUM|MAL7P1.12 [details] [associations]
symbol:MAL7P1.12 "erythrocyte
membrane-associated antigen" species:5833 "Plasmodium falciparum"
[GO:0016020 "membrane" evidence=ISS] GO:GO:0016020
InterPro:IPR014001 SMART:SM00487 EMBL:AL844506
RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35 IntAct:Q8IC35
MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA GeneID:2655186
KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 171 (65.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 56/160 (35%), Positives = 82/160 (51%)
Query: 281 EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFE 340
E+ + ++IDE AQ E + IPL C + +L+GD QLP + S + + +SL E
Sbjct: 1918 EKFERVIIDECAQSIEPSNLIPLGHYC-NNLVLIGDHKQLPPTIISPDAIKLGLDKSLLE 1976
Query: 341 RLSYLGHSK-HLLSMQYRMHPSISFFPNSYFYENKILDAP-TVRKRSYEKQFL-PGPMYG 397
R + HLL+ Q RMH SI FPN +FY+NK+ A T R K FL P P
Sbjct: 1977 RFVMAKIAPVHLLNTQRRMHLSICVFPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCR 2036
Query: 398 PYAFINVFGGR-----EEFIEHSCRNMVEVSVVMKILLNL 432
AFI+V G+ E S N+ E+ ++ +L ++
Sbjct: 2037 -LAFIDVSIGKPGSKFENAYGTSKFNLYEIEPLITVLKSI 2075
>UNIPROTKB|Q8IC35 [details] [associations]
symbol:MAL7P1.12 "Erythrocyte membrane-associated antigen"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] GO:GO:0016020 InterPro:IPR014001 SMART:SM00487
EMBL:AL844506 RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35
IntAct:Q8IC35 MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA
GeneID:2655186 KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 171 (65.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 56/160 (35%), Positives = 82/160 (51%)
Query: 281 EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFE 340
E+ + ++IDE AQ E + IPL C + +L+GD QLP + S + + +SL E
Sbjct: 1918 EKFERVIIDECAQSIEPSNLIPLGHYC-NNLVLIGDHKQLPPTIISPDAIKLGLDKSLLE 1976
Query: 341 RLSYLGHSK-HLLSMQYRMHPSISFFPNSYFYENKILDAP-TVRKRSYEKQFL-PGPMYG 397
R + HLL+ Q RMH SI FPN +FY+NK+ A T R K FL P P
Sbjct: 1977 RFVMAKIAPVHLLNTQRRMHLSICVFPNFHFYDNKLKTANVTEENRPIIKGFLWPNPKCR 2036
Query: 398 PYAFINVFGGR-----EEFIEHSCRNMVEVSVVMKILLNL 432
AFI+V G+ E S N+ E+ ++ +L ++
Sbjct: 2037 -LAFIDVSIGKPGSKFENAYGTSKFNLYEIEPLITVLKSI 2075
>ZFIN|ZDB-GENE-070424-144 [details] [associations]
symbol:si:ch211-183d5.1 "si:ch211-183d5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR026855 ZFIN:ZDB-GENE-070424-144
GO:GO:0004386 PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AL935128 IPI:IPI00492493 Ensembl:ENSDART00000144897
Uniprot:F1QAI5
Length = 517
Score = 154 (59.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL 320
K ++ CT SS+ K + + ++IDE A E E+ IPL Q +L+GD Q+
Sbjct: 178 KYDVVLCTCSSALKPELREVMDFRQILIDECAMATEPEAFIPLVSHNPQQIVLLGDHQQI 237
Query: 321 PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+V+ +SLFER L + +L QYRMH I FP+ FY+ K+
Sbjct: 238 RPIVQCGHVKNKGMEKSLFERYMDLAN---MLDTQYRMHAEICSFPSDEFYDGKL 289
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 170 (64.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 57/188 (30%), Positives = 88/188 (46%)
Query: 255 KDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL-QLPCIQHAIL 313
+ F + +I CT S + S+ + ++ +++DEA E E+ IPL Q P + +L
Sbjct: 2327 RKFELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVL 2385
Query: 314 VGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYEN 373
+GD QL +V++ RSLFER H+L QYRMH I FP+ FY++
Sbjct: 2386 LGDHKQLRPVVKNERLQNLGLDRSLFERYH---EDAHMLDTQYRMHEGICAFPSVAFYKS 2442
Query: 374 KILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFI-------EHSCRNMVEVSVVM 426
K+ +R R G P F +V G + E+S N+ EV+ V+
Sbjct: 2443 KLKTWQGLR-RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVV 2501
Query: 427 KILLNLNL 434
+I L L
Sbjct: 2502 RITKQLTL 2509
Score = 42 (19.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 53 PYGAILYDVKVDCWRNRFSNPGKEPYKTLPG----DILVLADAKPETASDL 99
P +L DV+ F PG+EP LP D+L L + A L
Sbjct: 1380 PRDGVL-DVEARRQGAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISL 1429
>RGD|1565575 [details] [associations]
symbol:Setx "senataxin" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=ISO] [GO:0007623 "circadian rhythm"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR026121 RGD:1565575 GO:GO:0006302 PANTHER:PTHR10887:SF15
IPI:IPI00560336 Ensembl:ENSRNOT00000018281 UCSC:RGD:1565575
ArrayExpress:F1M0E2 Uniprot:F1M0E2
Length = 380
Score = 148 (57.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 50/155 (32%), Positives = 75/155 (48%)
Query: 286 LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--- 342
+++DEA Q E E+ PL C +LVGD QLP V S + E + +S+ R
Sbjct: 27 VIVDEAGQSCEVETLSPLIHRC-NKLVLVGDPKQLPPTVISMKAQEYGYDQSMMARFCKL 85
Query: 343 -------SYLGHSKHL-LSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGP 394
+ +G L L++QYRMHP I FP++Y Y NK L + + P
Sbjct: 86 LEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY-NKNLKTNRLTETIRCSSEWP-- 142
Query: 395 MYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ PY +V G E+ S N+ E+ +VM+I+
Sbjct: 143 -FQPYLVFDVGDGSEQRDNDSYINVQEIKLVMEII 176
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 159 (61.0 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 68/225 (30%), Positives = 103/225 (45%)
Query: 222 LHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSS--YKLHSVA 279
L E +K +EL + KE+ ++ ++ +I CT S+S L S
Sbjct: 2135 LDEKIAKVSKERQELASKIKEVQGRPQKTQSII----ILESHVICCTLSTSGGLLLESAF 2190
Query: 280 MEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFG 335
Q + F +++DEA Q E E+ PL C ILVGD QLP V S + E +
Sbjct: 2191 RGQGGVPFSCVIVDEAGQSCEVETLTPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYD 2249
Query: 336 RSLFERL----------SYLGHSKHL-LSMQYRMHPSISFFPNSYFYENKILDAPTVRKR 384
+S+ R + +G L L++QYRMHP I FP++Y Y N+ L T R+
Sbjct: 2250 QSMMARFYKLLEDNVEHNMIGRLPVLQLTVQYRMHPDICLFPSNYVY-NRSLK--TNRQT 2306
Query: 385 SYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ P + PY +V G E S N+ E+ +VM+I+
Sbjct: 2307 ETNRCSSDWP-FQPYLVFDVGDGSERRDNDSYVNVQEIKLVMEII 2350
Score = 48 (22.0 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+ +P+ FQ YF F FPL+
Sbjct: 1754 RPVPVRFQDCGDYFNVF-FPLM 1774
Score = 47 (21.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/128 (21%), Positives = 58/128 (45%)
Query: 83 GDILVLADA-KPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAE-VSKVEIKTFLEFV 140
G++ L + P+T ++ R G TF E+ + + ++ +S +K L++
Sbjct: 1673 GEVKSLCNVLHPQTPNNSNRQGYKLTFGENKSFSASSPVNILLSSQSISDTFVKEILKWK 1732
Query: 141 RERF----KCTAAPLRSCIFNLGTHLPKSYIG-EDNFQVLGTVISFLDSFETLLFQDNMG 195
E F +C P S ++ +P + D F V ++ L++FET+ Q+ +
Sbjct: 1733 YEMFVNFDQC--GPPASLCQSISRPVPVRFQDCGDYFNVFFPLM-ILNTFETVA-QEWIS 1788
Query: 196 SEDLEELF 203
S + E+ +
Sbjct: 1789 SPNKEKFY 1796
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 23 LEETRAQLFSSMEKVSKAPFAE----VVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPY 78
LE+ A+ S +++ SK+ F E V + KP +N S G P
Sbjct: 690 LEDLSAE--SCIKQSSKSLFTERAQDQVKISTEKPKSVKENCTSRSVLQNFTSRNG--PE 745
Query: 79 KTLPGDIL--VLADAKPETASDLQRVGRMWTFSEDINGNEIKEK-ECRKDAEVSKV 131
+ I+ +L D+ ++ + ++F +D+ G K K + +KD +K+
Sbjct: 746 RACDRGIITHLLTDSSTDSLEKMSTSNEDFSFKDDVLGKTSKTKIKSQKDEICAKL 801
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 202 LFSHSVDEDFSQSIVDIKYTLHESRSKC 229
L S S+ + F + I+ KY + + +C
Sbjct: 1715 LSSQSISDTFVKEILKWKYEMFVNFDQC 1742
>DICTYBASE|DDB_G0274797 [details] [associations]
symbol:aqr "intron-binding protein aquarius homolog"
species:44689 "Dictyostelium discoideum" [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR024860 dictyBase:DDB_G0274797
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000012
GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 RefSeq:XP_643918.1 ProteinModelPortal:Q555Z2
PRIDE:Q555Z2 EnsemblProtists:DDB0233439 GeneID:8619345
KEGG:ddi:DDB_G0274797 InParanoid:Q555Z2 ProtClustDB:CLSZ2431000
Uniprot:Q555Z2
Length = 1487
Score = 112 (44.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 37/99 (37%), Positives = 54/99 (54%)
Query: 308 IQHAILVGDECQLPAMVES-SVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSIS-FF 365
++ IL+GD QLP +V++ S++ ++F +SLF RL L L Q R PSIS F
Sbjct: 1195 LKRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLEIPHITLDRQGRSRPSISELF 1254
Query: 366 PNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINV 404
S+ Y+ + D P V+++ K PG Y Y INV
Sbjct: 1255 --SWKYKG-LQDLPLVKEQLQFKLANPGLAYD-YQLINV 1289
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 206 SVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNS--FKELNLPS-AMNMGLLKDFCFTKA 262
SVD + QS+++IK L E + + +EL F+ L P+ N LLK +K
Sbjct: 1065 SVD-NHHQSLLNIKKNLIELWNYIKEIFKELEECKVFELLKSPNDRYNYLLLKQ---SKI 1120
Query: 263 SLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQL 305
+ CT ++ K + + KF L+++E+AQ+ + ES IPLQL
Sbjct: 1121 VAMTCT-HAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQL 1164
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 25/115 (21%), Positives = 52/115 (45%)
Query: 107 TFSEDINGNEIKEKECRKDAEVSKVEIKTFLE-FVRERFKCTAAPLRSCIFNLGTHL-PK 164
TF ++ K++ + D V +E+ +LE ++ F T + + I ++ + K
Sbjct: 65 TFDSNLVEKIYKDEMLKSDQRVQLLELSHYLENYLWPNFNKTTSTNKYHIMSILMMVNEK 124
Query: 165 SYIGEDNFQVLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIK 219
S G ++FQ + S S + +++ S + LF + D S+ + DI+
Sbjct: 125 SKEGLNSFQTFHSKSSS-SSDDNSEQEESSPSSSFKNLFESLLQIDLSE-LTDIE 177
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 155 (59.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 58/186 (31%), Positives = 90/186 (48%)
Query: 261 KASLIFCTASSS--YKLHSVAMEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILV 314
++ +I CT S+S L S Q + F +++DEA Q E E+ PL C +LV
Sbjct: 2141 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRC-NKLVLV 2199
Query: 315 GDECQLPAMVESSVSGEAYFGRSLFERL----------SYLGHSKHL-LSMQYRMHPSIS 363
GD QLP V S + + + +S+ R + +G L L++QYRMHP I
Sbjct: 2200 GDPKQLPPTVISMKAQDYGYDQSMMARFYKLLEENVEHNVIGRLPILQLTVQYRMHPDIC 2259
Query: 364 FFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVS 423
FP++Y Y N+ L ++ + S P + PY +V G E S N+ E+
Sbjct: 2260 LFPSNYIY-NRNLKTNSLTEASRCSSDWP---FQPYLVFDVGDGSERRDNDSYVNVQEIK 2315
Query: 424 VVMKIL 429
+VM+I+
Sbjct: 2316 LVMEII 2321
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+++P+ FQ YF F FPL+
Sbjct: 1726 RRVPVRFQDCGDYFSVF-FPLM 1746
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 159 (61.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 67/225 (29%), Positives = 102/225 (45%)
Query: 222 LHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSS--YKLHSVA 279
L E+ SK +EL + KE+ ++ ++ +I CT S+S L S
Sbjct: 2112 LDENISKVSKERQELASKIKEVQGRPQKTQSII----ILESHIICCTLSTSGGLLLESAF 2167
Query: 280 MEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFG 335
Q + F +++DEA Q E E+ PL C ILVGD QLP V S + E +
Sbjct: 2168 RGQGGVPFSCVIVDEAGQSCEIETLTPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYD 2226
Query: 336 RSLFERLSYL--GHSKH---------LLSMQYRMHPSISFFPNSYFYENKILDAPTVRKR 384
+S+ R L + +H L++QYRMHP I FP++Y Y + T R+
Sbjct: 2227 QSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNL---KTNRQT 2283
Query: 385 SYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ P + PY +V G E S N+ E+ +VM+I+
Sbjct: 2284 EAIRCSSDWP-FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII 2327
Score = 52 (23.4 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 88 LADAKPETASDLQRVGRMWTFSEDINGNEIKEKECRKDAEVSKVEIKTFLEFVRERFKCT 147
+A+ +S ++ G+ T D+ GN+ K + R S+++ T + + CT
Sbjct: 1169 MAEDPVRPSSSVRNEGQSDTNKRDLVGNDFKSIDRRTSTPNSRIQRATTVSQKKSSKLCT 1228
Query: 148 AA-PLR 152
P+R
Sbjct: 1229 CTEPIR 1234
Score = 44 (20.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+ +P+ F + YF F FPL+
Sbjct: 1731 RPVPVRFHNYGDYFNVF-FPLM 1751
Score = 37 (18.1 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 202 LFSHSVDEDFSQSIVDIKYTLHESRSKC 229
L S SV + F + ++ KY + + +C
Sbjct: 1692 LSSQSVSDTFVKEVLKWKYEMFLNFGQC 1719
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 149 (57.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 61/187 (32%), Positives = 92/187 (49%)
Query: 261 KASLIFCTASSS--YKLHSVAMEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILV 314
++ +I CT S+S L + Q + F +++DEA Q E E+ PL C +LV
Sbjct: 2137 ESHIICCTLSTSGGLLLEAAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRC-NKLVLV 2195
Query: 315 GDECQLPAMVESSVSGEAY-FGRSL---FERL-------SYLGHSKHL-LSMQYRMHPSI 362
GD QLP V SV + Y + +S+ F +L + +G L L++QYRMHP I
Sbjct: 2196 GDPKQLPPTV-ISVKAQDYGYDQSMMARFHKLLEESVEHNMIGRLPVLQLTIQYRMHPDI 2254
Query: 363 SFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEV 422
FP+SY Y+ IL T R + P + PY +V G E S N+ E+
Sbjct: 2255 CLFPSSYIYDG-ILR--TNRGTETSRCSSDWP-FQPYLVFDVGDGLERRDNDSYVNVQEI 2310
Query: 423 SVVMKIL 429
+VM+++
Sbjct: 2311 KLVMELI 2317
Score = 51 (23.0 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+++P+ FQ YF F FPL+
Sbjct: 1721 RRVPIRFQDCGDYFNVF-FPLM 1741
>DICTYBASE|DDB_G0271732 [details] [associations]
symbol:DDB_G0271732 "AN1-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51061
SMART:SM00382 dictyBase:DDB_G0271732 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000006 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
OMA:HARQRIS RefSeq:XP_645520.1 ProteinModelPortal:Q75JA0
PRIDE:Q75JA0 EnsemblProtists:DDB0232283 GeneID:8618149
KEGG:ddi:DDB_G0271732 InParanoid:Q75JA0 ProtClustDB:CLSZ2846906
Uniprot:Q75JA0
Length = 1024
Score = 142 (55.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 228 KCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLV 287
K HS R + +S KEL + L +++I T + + ++ ++V
Sbjct: 363 KQHSERRVIQSSIKELRIDLKNREKSLIQQVINDSNVILSTNTGASDSSLKGIDNFDWVV 422
Query: 288 IDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--SYL 345
IDE AQ E+ IP+Q +L GD QLP + S + + +LFER+ Y
Sbjct: 423 IDECAQALEASCWIPIQKG--NKLLLAGDHQQLPPTIHSMEAAKMGLSITLFERIIKQYG 480
Query: 346 GHSKHLLSMQYRMHPSISFFPNSYFYENKIL 376
LL++QYRM+ I + + FY +K++
Sbjct: 481 DQVSRLLNVQYRMNHKIMDWSSMEFYNSKMI 511
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 152 (58.6 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 59/186 (31%), Positives = 89/186 (47%)
Query: 261 KASLIFCTASSS--YKLHSVAMEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILV 314
++ +I CT S+S L S Q + F +++DEA Q E E+ PL C +LV
Sbjct: 2124 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRC-NKLVLV 2182
Query: 315 GDECQLPAMVESSVSGEAYFGRSLFERL----------SYLGHSKHL-LSMQYRMHPSIS 363
GD QLP V S + E + +S+ R + +G L L++QYRMHP I
Sbjct: 2183 GDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 2242
Query: 364 FFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVS 423
FP++Y Y NK L + + P + PY +V G E+ S N+ E+
Sbjct: 2243 LFPSNYVY-NKNLKTNRLTETIRCSSEWP---FQPYLVFDVGDGSEQRDNDSYINVQEIK 2298
Query: 424 VVMKIL 429
+VM+I+
Sbjct: 2299 LVMEII 2304
Score = 46 (21.3 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+ +P+ FQ ++YF F+ PL+
Sbjct: 1713 RPVPVRFQDCAEYFNVFL-PLI 1733
Score = 37 (18.1 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 83 GDILVLADAKPETASD 98
G++ + A+PE++SD
Sbjct: 1460 GEVAAVRAAEPESSSD 1475
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 156 (60.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/126 (33%), Positives = 62/126 (49%)
Query: 251 MGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL-QLPCIQ 309
+G + F + +I CT S + S+ ++ ++IDEA E E+ IPL +
Sbjct: 2593 LGKARKFELDQHRVILCTCSCAASA-SLRKLDVRQILIDEAGMATEPETLIPLVAFSKAE 2651
Query: 310 HAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSY 369
+L+GD QL +V++ RSLFER H+L QYRMH I FP+
Sbjct: 2652 KVVLLGDHKQLRPVVKNEQLQNLGLDRSLFERYHV---DAHMLDTQYRMHEGICAFPSME 2708
Query: 370 FYENKI 375
FYE K+
Sbjct: 2709 FYEKKL 2714
Score = 42 (19.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 55 GAILYDVKVDCWRNRFSNP 73
G+ L+ V++ WR RF P
Sbjct: 1496 GSRLFWVRIVLWRQRFYYP 1514
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 151 (58.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 60/186 (32%), Positives = 88/186 (47%)
Query: 261 KASLIFCTASSS--YKLHSVAMEQ--LKF--LVIDEAAQLKESESAIPLQLPCIQHAILV 314
++ +I CT S+S L S Q + F +++DEA Q E E+ PL C ILV
Sbjct: 2123 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRC-NKLILV 2181
Query: 315 GDECQLPAMVESSVSGEAYFGRSLFERL----------SYLGHSKHL-LSMQYRMHPSIS 363
GD QLP V S + E + +S+ R + +G L L++QYRMHP I
Sbjct: 2182 GDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 2241
Query: 364 FFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVS 423
FP++Y Y NK L + + P + PY +V G E S N+ E+
Sbjct: 2242 LFPSNYVY-NKNLKTNRLTESIRCSSEWP---FQPYLVFDVGDGSERRDNDSYINVQEIK 2297
Query: 424 VVMKIL 429
+VM+I+
Sbjct: 2298 LVMEII 2303
Score = 46 (21.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 2 KQIPLSFQSVSQYFESFVFPLL 23
+ +P+ FQ ++YF F+ PL+
Sbjct: 1712 RPVPVRFQDCAEYFNVFL-PLI 1732
>TAIR|locus:2056896 [details] [associations]
symbol:AT2G03270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AC005313 EMBL:AC006284 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 UniGene:At.10455 UniGene:At.71239 EMBL:AY045820
EMBL:AY091361 IPI:IPI00521943 PIR:T02699 RefSeq:NP_565299.1
ProteinModelPortal:O81047 SMR:O81047 STRING:O81047 PaxDb:O81047
PRIDE:O81047 EnsemblPlants:AT2G03270.1 GeneID:814856
KEGG:ath:AT2G03270 TAIR:At2g03270 InParanoid:O81047 OMA:GHPSRVS
PhylomeDB:O81047 ProtClustDB:CLSN2687941 ArrayExpress:O81047
Genevestigator:O81047 Uniprot:O81047
Length = 639
Score = 137 (53.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/92 (39%), Positives = 50/92 (54%)
Query: 286 LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLS-- 343
++IDE AQ E I L IL GD QLP ++S+ + GR+LFERL+
Sbjct: 366 VIIDEGAQALEVACWIALLKG--SRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADL 423
Query: 344 YLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
Y K +L++QYRMH I + + Y+NKI
Sbjct: 424 YGDEIKSMLTVQYRMHELIMNWSSKELYDNKI 455
>UNIPROTKB|E2R760 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0032797 "SMN complex" evidence=IEA] [GO:0032575
"ATP-dependent 5'-3' RNA helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575
PANTHER:PTHR10887:SF23 EMBL:AAEX03011604 Ensembl:ENSCAFT00000038980
NextBio:20858044 Uniprot:E2R760
Length = 992
Score = 147 (56.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 69/257 (26%), Positives = 110/257 (42%)
Query: 133 IKTFLEFVRERFKCTA-APLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQ 191
++ L+ VR+ K AP + NL L + + LG L+S +
Sbjct: 224 VEIILQAVRQGLKVLCCAPSNIAVDNLVERLARC---KQKILRLGHPARLLESIQQHSLD 280
Query: 192 DNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELN--LPSAM 249
+ D ++ + + +D Q+ V+ + T + R + SV WN K L L
Sbjct: 281 AVLARSDNAQIVA-DIRKDIDQAFVNNRQT--QDRREKSSV----WNEVKLLRKELKERE 333
Query: 250 NMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLP 306
+L+ T A+++ T ASS L + +VIDE AQ E+ IPL L
Sbjct: 334 EAAMLESL--TSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEASCWIPL-LK 390
Query: 307 CIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSK--HLLSMQYRMHPSISF 364
+ IL GD QLP S + A SL ERL+ ++ L++QYRMH +I
Sbjct: 391 A-RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQYRMHQAIMR 449
Query: 365 FPNSYFYENKILDAPTV 381
+ + Y ++ P+V
Sbjct: 450 WASEALYHGQLTAHPSV 466
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 568 HTSREVEAVEGLGGTERYILHQLFVTVSPK 597
H E+++V+G G E+ + FV + K
Sbjct: 555 HPELEIKSVDGFQGREKEAVVLSFVRSNRK 584
>UNIPROTKB|E2R8W1 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
CTD:3508 OMA:HARQRIS PANTHER:PTHR10887:SF23 EMBL:AAEX03011604
RefSeq:XP_540807.2 Ensembl:ENSCAFT00000017093 GeneID:483686
KEGG:cfa:483686 Uniprot:E2R8W1
Length = 1010
Score = 147 (56.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 69/257 (26%), Positives = 110/257 (42%)
Query: 133 IKTFLEFVRERFKCTA-APLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQ 191
++ L+ VR+ K AP + NL L + + LG L+S +
Sbjct: 224 VEIILQAVRQGLKVLCCAPSNIAVDNLVERLARC---KQKILRLGHPARLLESIQQHSLD 280
Query: 192 DNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELN--LPSAM 249
+ D ++ + + +D Q+ V+ + T + R + SV WN K L L
Sbjct: 281 AVLARSDNAQIVA-DIRKDIDQAFVNNRQT--QDRREKSSV----WNEVKLLRKELKERE 333
Query: 250 NMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLP 306
+L+ T A+++ T ASS L + +VIDE AQ E+ IPL L
Sbjct: 334 EAAMLESL--TSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEASCWIPL-LK 390
Query: 307 CIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSK--HLLSMQYRMHPSISF 364
+ IL GD QLP S + A SL ERL+ ++ L++QYRMH +I
Sbjct: 391 A-RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQYRMHQAIMR 449
Query: 365 FPNSYFYENKILDAPTV 381
+ + Y ++ P+V
Sbjct: 450 WASEALYHGQLTAHPSV 466
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 568 HTSREVEAVEGLGGTERYILHQLFVTVSPK 597
H E+++V+G G E+ + FV + K
Sbjct: 555 HPELEIKSVDGFQGREKEAVVLSFVRSNRK 584
>SGD|S000001500 [details] [associations]
symbol:HCS1 "Hexameric DNA polymerase alpha-associated DNA
helicase A" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0033203 "DNA helicase A
complex" evidence=IDA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 SGD:S000001500 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 EMBL:BK006944 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:X74152 GO:GO:0006273 GO:GO:0043141
HOGENOM:HOG000185831 OrthoDB:EOG444PTN GO:GO:0033203 EMBL:Z28017
PIR:S34700 RefSeq:NP_012908.1 ProteinModelPortal:P34243 SMR:P34243
DIP:DIP-1383N IntAct:P34243 MINT:MINT-399891 STRING:P34243
PaxDb:P34243 EnsemblFungi:YKL017C GeneID:853852 KEGG:sce:YKL017C
CYGD:YKL017c GeneTree:ENSGT00700000104572 OMA:QGGDFPE
SABIO-RK:P34243 NextBio:975085 Genevestigator:P34243
GermOnline:YKL017C TIGRFAMs:TIGR00376 Uniprot:P34243
Length = 683
Score = 133 (51.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 55/195 (28%), Positives = 88/195 (45%)
Query: 205 HSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLP-SAMNMGLLKDFCFTKAS 263
+++ +D SQ I D K + K + +E WN K L +KD ++
Sbjct: 306 NTIVKDISQEI-D-KLIQENKKLKNYKQRKENWNEIKLLRKDLKKREFKTIKDLII-QSR 362
Query: 264 LIFCT--ASSSYKLHSVAMEQLKF-----LVIDEAAQLKESESAIPLQLPCIQ-HA-ILV 314
++ T SSS +L S+ + F L+IDE +Q E + IPL Q H +L
Sbjct: 363 IVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLA 422
Query: 315 GDECQLPAMVESSVSGEAYFG--RSLFERLSYLGHSKHL---LSMQYRMHPSISFFPNSY 369
GD QLP +++ +LF+R+ + + + L++QYRM+ I FP+
Sbjct: 423 GDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHS 482
Query: 370 FYENKILDAPTVRKR 384
Y K+L TV R
Sbjct: 483 MYNGKLLADATVANR 497
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 154 (59.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 59/194 (30%), Positives = 88/194 (45%)
Query: 251 MGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQ-LPCIQ 309
+G + + + S+I CT S + S+ ++ ++IDEA E E+ IPL +
Sbjct: 2618 LGKARKYELERHSVILCTCSCAAS-GSLKALNVRQILIDEAGMATEPETLIPLVCFSKTE 2676
Query: 310 HAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSY 369
+L+GD QL +V++ RSLFER +L QYRMH I FP+
Sbjct: 2677 KVVLLGDHKQLRPVVKNEQLRNLGMDRSLFERYH---RDAIMLDTQYRMHKDICSFPSME 2733
Query: 370 FYENKI-----LDAPTVRKRSYEKQFLP---GPMYGPYAFINVFGGREEFIEHSCRNMVE 421
FY K+ L P KQ P G + G + V EE E+S N E
Sbjct: 2734 FYGGKLKTWSDLKRPPSLLGHVGKQSCPVIFGSVQGYEQKLLV--STEEGNENSRANPEE 2791
Query: 422 VSVVMKILLNLNLE 435
V+ V++I+ L L+
Sbjct: 2792 VTEVVRIIKQLTLD 2805
Score = 38 (18.4 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 58 LYDVKVDCWRNRFSNP 73
L+ V++ WR RF P
Sbjct: 1495 LFWVRIVLWRERFYYP 1510
>UNIPROTKB|Q5ZKG3 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=ISS] [GO:0000076 "DNA replication
checkpoint" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004518
"nuclease activity" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0043142 "single-stranded DNA-dependent
ATPase activity" evidence=ISS] [GO:0017108 "5'-flap endonuclease
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0006264 "mitochondrial DNA
replication" evidence=ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0005760
"gamma DNA polymerase complex" evidence=ISS] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AJ720121 EMBL:AADN02028013 IPI:IPI00596013
RefSeq:NP_001006497.1 UniGene:Gga.42409 STRING:Q5ZKG3 GeneID:423688
KEGG:gga:423688 CTD:1763 HOGENOM:HOG000168456 HOVERGEN:HBG081456
KO:K10742 NextBio:20826122 Uniprot:Q5ZKG3
Length = 992
Score = 142 (55.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 276 HSVAME-QLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYF 334
H + ++ Q F ++DEA+Q+ + PL C + +LVGD QLP +V++S + +
Sbjct: 717 HPIFVQKQFDFCIVDEASQISQPICLGPLF--CSKRFVLVGDHQQLPPLVQNSEARDLGM 774
Query: 335 GRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
SLF+RL ++ L++QYRM+ I N YE K+
Sbjct: 775 SESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL 815
Score = 38 (18.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAI-LY 59
+KQ + Q + +Y SF F E+ + + K P +E + S + +
Sbjct: 171 LKQTEI-MQEIEEYLPSF-FKWTEDFVRNPANQNKMQLKLP-SENKTGDCSSTVEIVDIL 227
Query: 60 DVKVDCWRNRFSNPGK 75
D++ + W RF GK
Sbjct: 228 DIEENIWSPRFGLKGK 243
>UNIPROTKB|F1NWZ8 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0000076
"DNA replication checkpoint" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0005634 GO:GO:0006284 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0017108 GO:GO:0043137 GO:GO:0005760
GO:GO:0043142 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AADN02028013 GeneTree:ENSGT00550000074852 OMA:EHESLCH
IPI:IPI00584167 Ensembl:ENSGALT00000006429 ArrayExpress:F1NWZ8
Uniprot:F1NWZ8
Length = 1009
Score = 142 (55.0 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 276 HSVAME-QLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYF 334
H + ++ Q F ++DEA+Q+ + PL C + +LVGD QLP +V++S + +
Sbjct: 766 HPIFVQKQFDFCIVDEASQISQPICLGPLF--CSKRFVLVGDHQQLPPLVQNSEARDLGM 823
Query: 335 GRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
SLF+RL ++ L++QYRM+ I N YE K+
Sbjct: 824 SESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL 864
Score = 38 (18.4 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAI-LY 59
+KQ + Q + +Y SF F E+ + + K P +E + S + +
Sbjct: 219 LKQTEI-MQEIEEYLPSF-FKWTEDFVRNPANQNKMQLKLP-SENKTGDCSSTVEIVDIL 275
Query: 60 DVKVDCWRNRFSNPGK 75
D++ + W RF GK
Sbjct: 276 DIEENIWSPRFGLKGK 291
>UNIPROTKB|E1BY42 [details] [associations]
symbol:E1BY42 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IEA] [GO:0032797 "SMN complex"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51061 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:AADN02040052 EMBL:AADN02040053
IPI:IPI00595444 Ensembl:ENSGALT00000006901 Uniprot:E1BY42
Length = 976
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 71/269 (26%), Positives = 110/269 (40%)
Query: 133 IKTFLEFVRERFKCTA-APLRSCIFNLGTHLPKSYIGEDNFQVLGTVISFLDSFETLLFQ 191
++ L+ V++ K AP + NL L Y + LG L+ +
Sbjct: 221 VEIILQAVQQGLKVLCCAPSNVAVDNLVERLA-GY--KARILRLGHPARLLEPIQQHSLD 277
Query: 192 DNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHES-RSKCHSVLRELWNSFKELNLPSAMN 250
+ D ++ + V +D Q+ K + R S ++ L KE +AM
Sbjct: 278 AVLARSDSAQIVA-DVRKDIDQAFAKSKKAQDKGERGHFLSEIKALRKELKERE-ETAMT 335
Query: 251 MGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL-QLP 306
L T AS++ T ASS L + +VIDE AQ E+ IPL + P
Sbjct: 336 AAL------THASVVLATNTGASSDGPLKLLPENYFDLVVIDECAQALEASCWIPLLKAP 389
Query: 307 CIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--SYLGHSKHLLSMQYRMHPSISF 364
IL GD QLP + S + SL ER+ Y +L++QYRMH +I
Sbjct: 390 ---KCILAGDHKQLPPTIISHKAAAKGLSLSLMERVIERYGEKVVKMLTVQYRMHEAIMQ 446
Query: 365 FPNSYFYENKILDAPTVRKRSYEKQFLPG 393
+ +S Y ++ P+V + + LPG
Sbjct: 447 WASSEMYGGRLTAHPSVAQHLLKD--LPG 473
>TAIR|locus:2200996 [details] [associations]
symbol:SDE3 "SILENCING DEFECTIVE" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0009616
"virus induced gene silencing" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] InterPro:IPR026127 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005737
eggNOG:COG1112 EMBL:AC005106 GO:GO:0003724 GO:GO:0035194
GO:GO:0009616 HOGENOM:HOG000239755 EMBL:AF339908 EMBL:AK117698
IPI:IPI00521883 PIR:C86189 RefSeq:NP_172037.1 UniGene:At.15329
UniGene:At.42398 ProteinModelPortal:Q8GYD9 SMR:Q8GYD9 STRING:Q8GYD9
PaxDb:Q8GYD9 PRIDE:Q8GYD9 EnsemblPlants:AT1G05460.1 GeneID:837047
KEGG:ath:AT1G05460 GeneFarm:2423 TAIR:At1g05460 InParanoid:Q8GYD9
OMA:DEREGNN PhylomeDB:Q8GYD9 ProtClustDB:CLSN2682016
Genevestigator:Q8GYD9 GermOnline:AT1G05460 PANTHER:PTHR10887:SF165
Uniprot:Q8GYD9
Length = 1002
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 49/186 (26%), Positives = 84/186 (45%)
Query: 260 TKASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILV--G 315
T+ L+ T S+ L++ + + F +++DEA Q E E+ I + C+ ++V G
Sbjct: 514 TRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAG 573
Query: 316 DECQLPAMVESSVSGEAYFGRSLFERL---SYL--GHSKHLLSM--QYRMHPSISFFPNS 368
D QL ++ S + G+S ERL Y G ++ + YR HP I P+
Sbjct: 574 DPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSK 633
Query: 369 YFYENKILDAPTVRKRSYEK-QFLPGPMYGPYAFINVFGGRE-EFIEHSCRNMVEVSVVM 426
FY+ +++ + FLP + P F + G E E S N +E+S V+
Sbjct: 634 LFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIEISKVI 692
Query: 427 KILLNL 432
+ + L
Sbjct: 693 ETIKRL 698
>ZFIN|ZDB-GENE-090313-71 [details] [associations]
symbol:dna2 "DNA replication helicase 2 homolog
(yeast)" species:7955 "Danio rerio" [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=ISS]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
ZFIN:ZDB-GENE-090313-71 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852 EMBL:BX530068
IPI:IPI00901582 Ensembl:ENSDART00000109798 ArrayExpress:F1Q892
Bgee:F1Q892 Uniprot:F1Q892
Length = 1378
Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 264 LIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAM 323
LI T K + + F ++DEA+Q+ + PL Q +LVGD QLP +
Sbjct: 1054 LIVATTCMGVKHPIFSRRRFDFCIVDEASQISQPVCIGPLFYA--QRFVLVGDHQQLPPI 1111
Query: 324 VESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
V+++ + SLF+RL + + L++QYRM+ +I N+ YE ++
Sbjct: 1112 VQNAEARSLGMDESLFKRLEHHRDAVVQLNVQYRMNSAIMSLSNALMYEGRL 1163
>UNIPROTKB|F1MHU8 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0051260 GO:GO:0043022
GO:GO:0000049 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:DAAA02063651 IPI:IPI01017505
RefSeq:XP_003584325.1 RefSeq:XP_003588118.1 UniGene:Bt.103594
Ensembl:ENSBTAT00000044489 GeneID:618606 KEGG:bta:618606
Uniprot:F1MHU8
Length = 981
Score = 130 (50.8 bits), Expect = 0.00013, P = 0.00013
Identities = 55/200 (27%), Positives = 91/200 (45%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHESRSKCHSVL--RELWNSFKELNL-----P 246
L+ + HS+D D ++ + DI+ + ++ +K RE N E+ L
Sbjct: 269 LDSIQQHSLDAVLARSDSARIVADIRRDIDQAWAKNRKTQDKREKSNFRDEIKLLRKELK 328
Query: 247 SAMNMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303
+L+ AS++ T AS+ L + +VIDE AQ E+ IPL
Sbjct: 329 DREEAAMLESLA--AASVVLATNTGASADGPLKLLPDSHFDMVVIDECAQALEASCWIPL 386
Query: 304 QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLS--YLGHSKHLLSMQYRMHPS 361
L + IL GD QLP + S + A SL ERL+ + + +L++QYRMH +
Sbjct: 387 -LKA-RKCILAGDHKQLPPTIVSHKAALAGLSLSLMERLAERHGAGALRMLTVQYRMHQA 444
Query: 362 ISFFPNSYFYENKILDAPTV 381
I+ + + Y ++ P+V
Sbjct: 445 IARWASEALYHGQLTAHPSV 464
>UNIPROTKB|I6L9H4 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
UniGene:Hs.370140 UniGene:Hs.569824 HGNC:HGNC:16878 ChiTaRS:HELZ
EMBL:BC094881 ProteinModelPortal:I6L9H4 Ensembl:ENST00000579953
Uniprot:I6L9H4
Length = 1163
Score = 121 (47.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 43/139 (30%), Positives = 65/139 (46%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQ-HAILVGDE 317
K ++ T ++S L + +E F +++DEAAQ E E+ +PL L +L GD
Sbjct: 765 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDH 824
Query: 318 CQLPAMVESSVSGEAYFGRSLFERL--SYLGH--SKHLLSMQYRMHPSISFFPNSYFYEN 373
QL V S + E SL +RL Y + LL YR H +I + + FYE
Sbjct: 825 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 884
Query: 374 KILDAPTVRKRSYEKQFLP 392
K++ + K+ K F P
Sbjct: 885 KLMASG---KQPAHKDFYP 900
Score = 59 (25.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 166 YIGEDNFQVLGTVISFLDSFETLL-FQDNMGSEDLEE--LFSH----SVDEDFSQSIVDI 218
Y+ Q++ T + S +T++ F+ N + DLE+ L + S D+ F+QS++D
Sbjct: 391 YLMHAKQQLVTTAKRWDSSSKTIIDFEPNE-TTDLEKSLLIRYQIPLSADQLFTQSVLDK 449
Query: 219 KYTLHESRSKCHSVLR-ELWNSFKELN-LPSAMNMGLLKDFCFTKAS 263
T +S+ H +L E +KE++ + + +L F T S
Sbjct: 450 SLTKSNYQSRLHDLLYIEEIAQYKEISKFNLKVQLQILASFMLTGVS 496
>CGD|CAL0006154 [details] [associations]
symbol:orf19.6199 species:5476 "Candida albicans" [GO:0043141
"ATP-dependent 5'-3' DNA helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0033203 "DNA helicase
A complex" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR004483 SMART:SM00382
CGD:CAL0006154 GO:GO:0005524 GO:GO:0003677 GO:GO:0017111
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000038
EMBL:AACQ01000037 TIGRFAMs:TIGR00376 RefSeq:XP_718706.1
RefSeq:XP_718790.1 ProteinModelPortal:Q5AAW1 STRING:Q5AAW1
GeneID:3639532 GeneID:3639630 KEGG:cal:CaO19.13579
KEGG:cal:CaO19.6199 Uniprot:Q5AAW1
Length = 719
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 286 LVIDEAAQLKESESAIPLQLPC-IQHAILVGDECQLPAMVE----------SSVSGEAYF 334
++IDE +Q E + IPL L + ++ GD QLP ++ SS S +
Sbjct: 408 IIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASIL 467
Query: 335 GRSLFERLSYLGHS---KHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFL 391
+LF+RL H K LL +QYRM+ SI FP+ Y+N++ +VR+ S L
Sbjct: 468 ATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVREISLVD--L 525
Query: 392 PG 393
PG
Sbjct: 526 PG 527
>UNIPROTKB|Q5AAW1 [details] [associations]
symbol:HCS1 "Putative uncharacterized protein HCS1"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR004483 SMART:SM00382 CGD:CAL0006154 GO:GO:0005524
GO:GO:0003677 GO:GO:0017111 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AACQ01000038 EMBL:AACQ01000037
TIGRFAMs:TIGR00376 RefSeq:XP_718706.1 RefSeq:XP_718790.1
ProteinModelPortal:Q5AAW1 STRING:Q5AAW1 GeneID:3639532
GeneID:3639630 KEGG:cal:CaO19.13579 KEGG:cal:CaO19.6199
Uniprot:Q5AAW1
Length = 719
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 286 LVIDEAAQLKESESAIPLQLPC-IQHAILVGDECQLPAMVE----------SSVSGEAYF 334
++IDE +Q E + IPL L + ++ GD QLP ++ SS S +
Sbjct: 408 IIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASIL 467
Query: 335 GRSLFERLSYLGHS---KHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFL 391
+LF+RL H K LL +QYRM+ SI FP+ Y+N++ +VR+ S L
Sbjct: 468 ATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQLYDNQLKCDDSVREISLVD--L 525
Query: 392 PG 393
PG
Sbjct: 526 PG 527
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 145 (56.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 40/117 (34%), Positives = 58/117 (49%)
Query: 264 LIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL-QLPCIQHAILVGDECQLPA 322
+I CT SS+ S+ +K ++IDE A E E+ IPL + +L+GD QL
Sbjct: 2252 VILCTCSSA-SAGSLEKLNVKQILIDECAMSTEPETLIPLVSHKHAEKVVLLGDHKQLKP 2310
Query: 323 MVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
+V + SLFER +L QYRMH +I FP+ FYE+++ P
Sbjct: 2311 VVNNDFCKSLGMETSLFERYQ---KQAWMLDTQYRMHKNICEFPSQEFYEHRLKTCP 2364
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 210 DFSQSIVDIKYTLHESRSKCHSVLREL 236
DF++ + K T++E R++C + +L
Sbjct: 1629 DFNKK--NSKATMYEKRARCMQMATQL 1653
>ASPGD|ASPL0000064563 [details] [associations]
symbol:AN7014 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0005681 EMBL:BN001304
GO:GO:0004386 GO:GO:0000398 HOGENOM:HOG000170551 GO:GO:0097157
PANTHER:PTHR10887:SF5 ProteinModelPortal:C8VC84
EnsemblFungi:CADANIAT00000462 OMA:TIYENEM Uniprot:C8VC84
Length = 1422
Score = 128 (50.1 bits), Expect = 0.00033, P = 0.00033
Identities = 83/340 (24%), Positives = 138/340 (40%)
Query: 119 EKECRKDAEVSKV-EIKTFLEFVRERFKCTAAPLRSCIFNLGTH----LPKSYIGEDNFQ 173
E+E + SK +++FL+ R F L + I G H Y +
Sbjct: 889 EEELDTETSYSKYGRVESFLDN-RNHFLAEVTRLAASIGAQGAHGNSCETAGYFHTVYIR 947
Query: 174 VLGTVISFLDSFETLLFQDNMGSEDLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVL 233
T L E ++ + + E FS++ F S K T+ + C +
Sbjct: 948 PAWTKFWELARSENTSTEEIIAAFPFHEYFSNAPAPVFDPSAS--KETVVDVAEGCQRHI 1005
Query: 234 RELWNSFKELNLPSAMNMGLLK-DFCFTKASLIFCTASSSYKLHSVAMEQLKF----LVI 288
+++ +++ + K ++ K + I S+ + + L F +V+
Sbjct: 1006 DRIFSELEDIRPFEILRQPKDKANYLLVKEARIIAMTSTHAAMRRQEIADLGFHYDNIVM 1065
Query: 289 DEAAQLKESESAIPL--------QLPCIQHAILVGDECQLPAMVESSVSGE-AYFGRSLF 339
+EAAQ+ E ES IP QLP ++ +L GD Q ++++ + A+F +SLF
Sbjct: 1066 EEAAQITEVESFIPTALQNMKEGQLP-LKRIVLCGDHLQNSPIIQNLAFRQYAHFEQSLF 1124
Query: 340 ERLSYLGHSKHLLSMQYRMHPSIS-FFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGP 398
RL LG L Q R PSI+ F + Y+N + + P V + KQ G +
Sbjct: 1125 LRLIRLGVPAITLDQQGRARPSIAELF--RWRYQN-LGNLPIVEQAPEFKQANAGFQF-E 1180
Query: 399 YAFINV---FG-GREEFIEHSCRNMVEVSVVMKILLNLNL 434
Y FINV G G E H +N+ E + I + L
Sbjct: 1181 YQFINVPDYQGTGEREPTPHFVQNLGEAEYAVAIFQYMRL 1220
>UNIPROTKB|Q60560 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:10036
"Mesocricetus auratus" [GO:0000049 "tRNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0043621 "protein self-association"
evidence=ISS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0030424 GO:GO:0008270 GO:GO:0006351
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
PANTHER:PTHR10887:SF23 EMBL:L15625 PIR:T48845
ProteinModelPortal:Q60560 SMR:Q60560 Uniprot:Q60560
Length = 989
Score = 134 (52.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 57/201 (28%), Positives = 89/201 (44%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHE--SRSKCHSVLRELWNSFKELNL-----P 246
LE HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 271 LESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELK 330
Query: 247 SAMNMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303
+++ T A ++ T ASS L + +V+DE AQ E+ IPL
Sbjct: 331 EREEAAIVQSL--TAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPL 388
Query: 304 -QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--SYLGHSKHLLSMQYRMHP 360
+ P IL GD QLP S + A RSL ERL + + +L++QYRMH
Sbjct: 389 LKAP---KCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQ 445
Query: 361 SISFFPNSYFYENKILDAPTV 381
+I+ + + Y ++ P+V
Sbjct: 446 AITRWASEAMYHGQLTAHPSV 466
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 568 HTSREVEAVEGLGGTERYILHQLFVTVSPK 597
H E+++V+G G E+ + FV + K
Sbjct: 555 HPELEIKSVDGFQGREKEAVILTFVRSNRK 584
Score = 38 (18.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 556 EQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590
E F + G ++E L +R ++HQ+
Sbjct: 725 EHFRAMIEGFVASKESQLEFPASLSSHDRLLVHQI 759
>MGI|MGI:99954 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2"
species:10090 "Mus musculus" [GO:0000049 "tRNA binding"
evidence=ISO] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006412 "translation"
evidence=NAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IMP]
[GO:0030424 "axon" evidence=IDA] [GO:0030426 "growth cone"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032575 "ATP-dependent 5'-3' RNA helicase activity"
evidence=ISO] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043022 "ribosome binding" evidence=ISO;IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154
SMART:SM00382 SMART:SM00393 MGI:MGI:99954 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0006412 GO:GO:0030424 GO:GO:0043025
GO:GO:0008270 GO:GO:0051260 GO:GO:0006351 GO:GO:0043621
GO:GO:0043022 GO:GO:0030426 GO:GO:0021522 GO:GO:0030529
GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:L10075
IPI:IPI00113033 PIR:S35633 UniGene:Mm.3179
ProteinModelPortal:P40694 SMR:P40694 IntAct:P40694 STRING:P40694
PhosphoSite:P40694 PaxDb:P40694 PRIDE:P40694 UCSC:uc008fwa.1
InParanoid:P40694 CleanEx:MM_IGHMBP2 Genevestigator:P40694
GermOnline:ENSMUSG00000024831 Uniprot:P40694
Length = 993
Score = 134 (52.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 58/202 (28%), Positives = 89/202 (44%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHE--SRSKCHSVLRELWNSFKELNL-----P 246
LE + HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 271 LESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELK 330
Query: 247 SAMNMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303
+++ T A ++ T ASS L + + +V+DE AQ E+ IPL
Sbjct: 331 EREEAAIVQSL--TAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPL 388
Query: 304 -QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSK---HLLSMQYRMH 359
+ P IL GD QLP S + A RSL ERL+ H +L++QYRMH
Sbjct: 389 LKAP---KCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEK-HGAGVVRMLTVQYRMH 444
Query: 360 PSISFFPNSYFYENKILDAPTV 381
+I + + Y + P+V
Sbjct: 445 QAIMCWASEAMYHGQFTSHPSV 466
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 568 HTSREVEAVEGLGGTERYILHQLFVTVSPK 597
H E+++V+G G E+ + FV + K
Sbjct: 555 HPELEIKSVDGFQGREKEAVLLTFVRSNRK 584
>POMBASE|SPBC16D10.04c [details] [associations]
symbol:dna2 "DNA replication endonuclease-helicase
Dna2" species:4896 "Schizosaccharomyces pombe" [GO:0000084 "S phase
of mitotic cell cycle" evidence=IC] [GO:0000723 "telomere
maintenance" evidence=IGI] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004518 "nuclease activity"
evidence=IMP] [GO:0004527 "exonuclease activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0019901 "protein
kinase binding" evidence=IPI] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IMP] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0071932 "replication fork reversal" evidence=IMP]
InterPro:IPR026851 PomBase:SPBC16D10.04c InterPro:IPR014808
Pfam:PF08696 GO:GO:0005829 GO:GO:0005524 GO:GO:0046872
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0043596 GO:GO:0004003 GO:GO:0004527 GO:GO:0000084
eggNOG:COG1112 GO:GO:0000784 GO:GO:0042162 GO:GO:0031573
GO:GO:0017108 GO:GO:0043137 GO:GO:0031860 GO:GO:0043142
PANTHER:PTHR10887:SF14 EMBL:AF144384 EMBL:AB028014 EMBL:AF075169
PIR:T39568 PIR:T47242 PIR:T51292 RefSeq:NP_596499.2 STRING:Q9URU2
GeneID:2540148 OrthoDB:EOG47H8Z4 NextBio:20801284 GO:GO:0071932
InterPro:IPR022765 Pfam:PF01930 Uniprot:Q9URU2
Length = 1397
Score = 127 (49.8 bits), Expect = 0.00041, P = 0.00041
Identities = 44/147 (29%), Positives = 76/147 (51%)
Query: 250 NMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQ-LKFLVIDEAAQLKESESAIPLQLPCI 308
++ LK F + ++ C++ Y HS+ ++ + +IDEA+Q+ PLQL
Sbjct: 1028 DLASLKHF-YEDPQIVACSSLGVY--HSIFNKRKFDYCIIDEASQIPLPICLGPLQLA-- 1082
Query: 309 QHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHL--LSMQYRMHPSISFFP 366
+ +LVGD QLP +V++S + + SLF+ LS H + + L +QYRM+ I+
Sbjct: 1083 EKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEK-HPEAVTTLRLQYRMNEDINSLS 1141
Query: 367 NSYFYE-NKILDAPTVRKRSYEKQFLP 392
+ Y N + + T+ S +K LP
Sbjct: 1142 SELIYGGNLVCGSKTI---SQKKLILP 1165
>UNIPROTKB|Q8QHA5 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8355 "Xenopus laevis" [GO:0000076
"DNA replication checkpoint" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006264
"mitochondrial DNA replication" evidence=ISS] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0016890 "site-specific
endodeoxyribonuclease activity, specific for altered base"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] InterPro:IPR026851 InterPro:IPR014808
Pfam:PF08696 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0016890 GO:GO:0045740 GO:GO:0000729 GO:GO:0017108
GO:GO:0000076 GO:GO:0043137 GO:GO:0043139 GO:GO:0043142
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOVERGEN:HBG081456
KO:K10742 EMBL:AF474372 RefSeq:NP_001079231.1 UniGene:Xl.17390
ProteinModelPortal:Q8QHA5 GeneID:378492 KEGG:xla:378492
Xenbase:XB-GENE-5829000 Uniprot:Q8QHA5
Length = 1053
Score = 124 (48.7 bits), Expect = 0.00062, P = 0.00062
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL +LVGD QLP +V+S+ + E SLF+RL
Sbjct: 759 FCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLER 816
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+ L++QYRM+ I N YE ++
Sbjct: 817 NQEAVVQLTVQYRMNSKIMALSNKLVYEGRL 847
>UNIPROTKB|F1MKC7 [details] [associations]
symbol:Bt.110099 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:DAAA02049790 EMBL:DAAA02049791
EMBL:DAAA02049792 EMBL:DAAA02049793 EMBL:DAAA02049794
EMBL:DAAA02049795 EMBL:DAAA02049796 EMBL:DAAA02049797
EMBL:DAAA02049798 EMBL:DAAA02049799 IPI:IPI00698970
Ensembl:ENSBTAT00000006233 Uniprot:F1MKC7
Length = 1941
Score = 126 (49.4 bits), Expect = 0.00076, P = 0.00076
Identities = 44/140 (31%), Positives = 68/140 (48%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHA--ILVGD 316
K ++ T ++S L + +E F +++DEAAQ E E+ +PL L +H +L GD
Sbjct: 769 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLAL-ATRHTRVVLAGD 827
Query: 317 ECQLPAMVESSVSGEAYFGRSLFERL--SYLGH--SKHLLSMQYRMHPSISFFPNSYFYE 372
QL V S + E SL +RL Y + LL YR H +I + + FYE
Sbjct: 828 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYE 887
Query: 373 NKILDAPTVRKRSYEKQFLP 392
K++ + K+ K+F P
Sbjct: 888 GKLMASG---KQPAHKEFYP 904
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 610 610 0.00087 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 87
No. of states in DFA: 617 (66 KB)
Total size of DFA: 329 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.36u 0.11s 52.47t Elapsed: 00:00:03
Total cpu time: 52.37u 0.11s 52.48t Elapsed: 00:00:03
Start: Fri May 10 10:27:33 2013 End: Fri May 10 10:27:36 2013