BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038017
(610 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 247 SAMNMGLLKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQL 305
S + ++ +A ++ T S S L + ++IDEAAQ E+ + IP+Q
Sbjct: 548 STQDTSSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQH 607
Query: 306 PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFF 365
C + +LVGD QLPA + S ++ + + +SLF+RL +S H+L+ QYRMH I F
Sbjct: 608 GC-KKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE-KNSPHMLTTQYRMHSLIRAF 665
Query: 366 PNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVF-------GGREEFIEHSCR 417
P+ +FY++ +LD P + R+ + P +GP F ++ GG F EH C+
Sbjct: 666 PSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK 722
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 247 SAMNMGLLKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQL 305
+ ++ ++ +A+++F T S S L + + ++IDEAAQ E + IPL
Sbjct: 447 TGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLAT 506
Query: 306 PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFF 365
C Q LVGD QLPA V S+V+ ++ +G S+FERL G+ +L QYRMHP I F
Sbjct: 507 RCKQ-VFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSF 565
Query: 366 PNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGRE 409
P+ FYE + D + ++ + + +GP+ F ++ G+E
Sbjct: 566 PSKQFYEGALEDGSDIEAQT-TRDWHKYRCFGPFCFFDIHEGKE 608
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 263 SLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL 320
S I C+ S +A +KF ++IDEA Q E S IPL+ + I+VGD QL
Sbjct: 1562 SDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQL 1620
Query: 321 PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP- 379
P V S + + +SLF R+ S +LL +QYRMHPSIS FP+S FY+ ++ D P
Sbjct: 1621 PPTVLSGAASNFKYNQSLFVRMEK-NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPG 1679
Query: 380 --TVRKRSYEKQFLPGPMYGPYAFINVFGGREE--FIEHSCRNMVEVSVVMKIL 429
+ KR + Q P PY F ++ GR+E S NM E+ V ++++
Sbjct: 1680 MDILNKRPWH-QLEP---LAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELV 1729
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 8/206 (3%)
Query: 227 SKCHSVLRELWNSFKELNLPSAMNMGLLK----DFCFTKASLIFCTASSS-YKLHSVAME 281
+K ++L + + +E + N+ +LK + +A ++ T S+S ++L A
Sbjct: 1449 TKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNAGL 1508
Query: 282 QLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFER 341
+ ++IDEAAQ E S IPL+ C + ++VGD QLP V S S + + +SL+ R
Sbjct: 1509 TFRTVIIDEAAQAVELSSIIPLKYGC-ESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVR 1567
Query: 342 L-SYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYA 400
+ S LLS+QYRM+P IS FP+ +FY +K+LD P + + + + P G Y
Sbjct: 1568 MFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVT-SRPWHEDPQLGIYR 1626
Query: 401 FINVFGGREEFIEHSCRNMVEVSVVM 426
F NV G S N+ E S ++
Sbjct: 1627 FFNVHGTEAFSNSKSLYNVEEASFIL 1652
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 616 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 673
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 674 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 733
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R + P F V G+EE S N E + V KI L
Sbjct: 734 ADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 786
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + L ++ + + ++IDE+ Q E E IPL L ++ +LVGD CQL
Sbjct: 630 ADVICCTCVGAADLR-LSNFRFRQVLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLG 687
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
++ + A +SLFERL LG L +QYRMHP++S FP++ FYE + + T+
Sbjct: 688 PVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI 747
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCR--NMVEVSVVMKIL 429
+R P P+ F V G+EE N E + V K++
Sbjct: 748 IERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLV 797
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I CT + M Q + ++IDE+ Q E E +P+ L Q ILVGD CQL
Sbjct: 621 ADVICCTCVGAGDPRLAKM-QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLG 678
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 679 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 738
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R + P F V G+EE S N E + V KI L
Sbjct: 739 ADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 791
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 259 FTKASLIFCT--ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGD 316
KA ++ CT + +L + + + ++IDE+ Q E E IP+ + + ILVGD
Sbjct: 544 LNKADVVCCTCVGAGDKRLDT----KFRTVLIDESTQASEPECLIPI-VKGAKQVILVGD 598
Query: 317 ECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKIL 376
QL ++ + +A +SLFERL LGH L +QYRM+P +S FP++ FYE +
Sbjct: 599 HQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQ 658
Query: 377 DAPTVRKRSYEKQFLPGPMYG-PYAFINVFGGREEF 411
+ T+ +R+ P P+ G P F + GREE
Sbjct: 659 NGVTIEQRTVPNSKFPWPIRGIPMMFWANY-GREEI 693
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 279 AMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESS-VSGEAYFG 335
M LKF +V+DE +Q+ E S +P+ + ILVGD QLP ++ S + E
Sbjct: 619 CMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLE 678
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM 395
++LF+RL +GH LL QYR HP+IS N FY+ +++ T +RS ++LP
Sbjct: 679 QTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT-- 736
Query: 396 YGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432
F NV G + ++S N+ E + +K++ +L
Sbjct: 737 ---LCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSL 770
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
A +I CT + + ++KF ++IDE+ Q E E +P+ L Q ILVGD CQ
Sbjct: 591 ADVICCTCVGA---GDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQ-LILVGDHCQ 646
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
L +V + A +SLFERL LG L +QYRMHP +S FP+++FYE + +
Sbjct: 647 LGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGV 706
Query: 380 TVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCR--NMVEVSVVMKI 428
R + F P P F V G+EE N E + V KI
Sbjct: 707 CAEDRRLKLDF-PWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKI 756
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDEC 318
K + + C S VA L F ++IDEAAQ E ++ IPL+ + ILVGD
Sbjct: 1348 KQADVVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGA-KKCILVGDPN 1406
Query: 319 QLPAMVESSVSGEAYFGRSLFERLSY-LGHSKHLLSMQYRMHPSISFFPNSYFYENKILD 377
QLP V S + + +SLF R+ + LLS+QYRMHP IS FP+ FY++++ D
Sbjct: 1407 QLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLED 1466
Query: 378 APTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ +++ ++ + P + Y +V G S N+ EV ++ ++
Sbjct: 1467 GDNMAEKT-QQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMV 1517
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
A ++ CT + + ++KF ++IDE+ Q E E IPL L C Q +LVGD Q
Sbjct: 595 ADVVCCTCVGAGDPR---LSKMKFRNVLIDESTQSAEPECMIPLVLGCKQ-VVLVGDHKQ 650
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAP 379
L ++ + + +A +SLFERL L + L +QYRMHP +S FP++ FYE + +
Sbjct: 651 LGPVIMNKKAAKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGV 710
Query: 380 TVRKRSYEKQFLPGPM-YGPYAFINVFGGRE 409
T +R + P P+ P F + G E
Sbjct: 711 TAAERLRKDVDFPWPVPETPMMFWSNLGNEE 741
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 233 LRELWNSFKELN---------LPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQL 283
LR+L +F L+ L M M +L+ KA +I T + + Q
Sbjct: 647 LRKLKEAFGSLSNEDEKRYIYLRRMMEMAILR-----KADVICATCVGA---GDPRLSQF 698
Query: 284 KF--LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFER 341
+F ++IDE+ Q E E IPL + Q ILVGD QL ++ +A +SLFER
Sbjct: 699 RFPHILIDESTQASEPECLIPLMMGAKQ-VILVGDHRQLGPVLLCKKVVDAGLSQSLFER 757
Query: 342 LSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPM-YGPYA 400
L LGH L++QYRMHPS++ FP++ YE +++ + R + +F P P P
Sbjct: 758 LISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKF-PWPQPKDPMF 816
Query: 401 FINVFGGRE------EFIEHSCRNMVEVSVVMKIL 429
F N G E FI N E S+ KI+
Sbjct: 817 FFNCTGSEEISSSGTSFI-----NTTEASICEKIV 846
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQL 320
+A+ + C ++ + + ++IDEA Q E E IPL L Q +LVGD QL
Sbjct: 536 RAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQ-VVLVGDHQQL 594
Query: 321 PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPT 380
+V + A +SLFERL LG+S L +QYRMHP +S FP++ FYE + + T
Sbjct: 595 GPVVMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVT 654
Query: 381 VRKR 384
+R
Sbjct: 655 TSER 658
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM32 PE=1
SV=1
Length = 1121
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 25/191 (13%)
Query: 260 TKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
+++ +IF T ++ +++ +++DEA Q E+ + +PL LP I++ + VGDE Q
Sbjct: 791 SQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQ 850
Query: 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKH--LLSMQYRMHPSISFFPNSYFYENKILD 377
L SS S SLFER+ G K+ +L QYRMHP IS FP Y ++ D
Sbjct: 851 L-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKD 905
Query: 378 APTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNM-----------VEVSVVM 426
T ++++ PG + P F G E + + R++ VE+ ++
Sbjct: 906 GVTDEQKAW-----PGVQH-PLFFYQCDLGPESRVRSTQRDIVGFTYENKHECVEIVKII 959
Query: 427 KILLNLNLEVP 437
+IL+ L+ +VP
Sbjct: 960 QILM-LDKKVP 969
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 3/186 (1%)
Query: 249 MNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCI 308
M + +K+ A+ + C SS ++ + + ++IDE+ Q E E + + + +
Sbjct: 570 MQLKRVKEHELLAAADVICCTCSSAADARLSKIRTRTVLIDESTQATEPEILVSI-MRGV 628
Query: 309 QHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNS 368
+ +LVGD CQL +V + A +SLFERL LG L +QYRMHP +S FP++
Sbjct: 629 RQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSN 688
Query: 369 YFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCR--NMVEVSVVM 426
FY+ + + T R P AF G EE N E + V
Sbjct: 689 VFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVE 748
Query: 427 KILLNL 432
K++ L
Sbjct: 749 KLVSKL 754
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 113/266 (42%), Gaps = 51/266 (19%)
Query: 205 HSVDEDFSQSIVDIKYTLH-ESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKAS 263
+ ED + I T + R + + +REL +++ + N+ + +
Sbjct: 312 RGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANI-------VSASK 364
Query: 264 LIFCTASSSYKLHSVAMEQLK-----FLVIDEAAQLKESESAIPLQLPCIQHAILVGDEC 318
++FCT LH QLK ++IDEA+Q E + IPL + IL GD
Sbjct: 365 VVFCT------LHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLL--GMNKVILAGDHM 416
Query: 319 QLPAMVESSVSGEAYFGRSLFERL--SYLGHSKHLLSMQYRMHPSISFFPNSYFYENKIL 376
QL V+S Y S+FERL S K L++QYRMH IS FP+ FY++K++
Sbjct: 417 QLSPNVQSK---RPYI--SMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLV 471
Query: 377 DAPTVRKR-------SYEKQFLPGPMYGPYAFINVFGGREE---------FIEHSCRNMV 420
A V+KR E + P+Y F + G +E F + S N
Sbjct: 472 PAEEVKKRLLMDLENVEETELTDSPIY----FYDTLGNYQEDDRSEDMQNFYQDSKSNHW 527
Query: 421 EVSVV---MKILLNLNLEVPKTWAVT 443
E +V + LL LE VT
Sbjct: 528 EAQIVSYHISGLLEAGLEAKDIAVVT 553
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 70.5 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 255 KDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL-QLPCIQHAIL 313
+ F + +I CT S + S+ + ++ +++DEA E E+ IPL Q P + +L
Sbjct: 2327 RKFELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVL 2385
Query: 314 VGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYEN 373
+GD QL +V++ RSLFER H+L QYRMH I FP+ FY++
Sbjct: 2386 LGDHKQLRPVVKNERLQNLGLDRSLFERYH---EDAHMLDTQYRMHEGICAFPSVAFYKS 2442
Query: 374 KILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFI-------EHSCRNMVEVSVVM 426
K+ +R R G P F +V G + E+S N+ EV+ V+
Sbjct: 2443 KLKTWQGLR-RPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVV 2501
Query: 427 KILLNLNL 434
+I L L
Sbjct: 2502 RITKQLTL 2509
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A +I+CT + M Q + ++IDE+ Q E + P++L Q +++G+
Sbjct: 592 ADVIWCTCVRAGDPRLAKM-QFRSILIDESTQATEPKCIGPVELGAKQ--LILGEITASW 648
Query: 322 AMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381
+ V + +A +SLFERL LG L +QYRMHP++S FP++ FYE + + T
Sbjct: 649 SCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA 708
Query: 382 RKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH--SCRNMVEVSVVMKILLNL 432
R + P F V G+EE S N E + V KI L
Sbjct: 709 GDRIKKGFDFQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRL 761
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 26/225 (11%)
Query: 222 LHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKL--HSVA 279
L E+ SK +EL + KE+ ++ ++ +I CT S+S L S
Sbjct: 2112 LDENISKVSKERQELASKIKEVQGRPQKTQSII----ILESHIICCTLSTSGGLLLESAF 2167
Query: 280 MEQ----LKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFG 335
Q +++DEA Q E E+ PL C ILVGD QLP V S + E +
Sbjct: 2168 RGQGGVPFSCVIVDEAGQSCEIETLTPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYD 2226
Query: 336 RSLFERLSYL--GHSKH---------LLSMQYRMHPSISFFPNSYFYENKILDAPTVRKR 384
+S+ R L + +H L++QYRMHP I FP++Y Y + T R+
Sbjct: 2227 QSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNL---KTNRQT 2283
Query: 385 SYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ P + PY +V G E S N+ E+ +VM+I+
Sbjct: 2284 EAIRCSSDWP-FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII 2327
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 286 LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL 345
+++DEA Q E E+ PL C ILVGD QLP V S + E + +S+ R L
Sbjct: 2154 VIVDEAGQSCEVETLSPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKL 2212
Query: 346 ----------GHSKHL-LSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGP 394
G L L++QYRMHP I FP++Y Y NK L + + P
Sbjct: 2213 LEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY-NKNLKTNRLTESIRCSSEWP-- 2269
Query: 395 MYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKIL 429
+ PY +V G E S N+ E+ +VM+I+
Sbjct: 2270 -FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII 2303
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 33/206 (16%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHE--SRSKCHSVLRELWNSFKELNLPSAMNM 251
LE HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 271 LESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKTQDKREKSNFRNEIKL------ 324
Query: 252 GLLKDF----------CFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298
L K+ T A ++ T ASS L + +V+DE AQ E+
Sbjct: 325 -LRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEAS 383
Query: 299 SAIPL-QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--SYLGHSKHLLSMQ 355
IPL + P IL GD QLP S + A RSL ERL + + +L++Q
Sbjct: 384 CWIPLLKAP---KCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQ 440
Query: 356 YRMHPSISFFPNSYFYENKILDAPTV 381
YRMH +I+ + + Y ++ P+V
Sbjct: 441 YRMHQAITRWASEAMYHGQLTAHPSV 466
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 281 EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFE 340
+Q F ++DEA+Q+ + PL C + +LVGD QLP +V++S + + SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLF--CSKRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 341 RLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
RL ++ L++QYRM+ I N YE K+
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL 815
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 41/210 (19%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHE--SRSKCHSVLRELWNSFKELNLPSAMNM 251
LE + HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 271 LESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKL------ 324
Query: 252 GLLKDF----------CFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298
L K+ T A ++ T ASS L + + +V+DE AQ E+
Sbjct: 325 -LRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEAS 383
Query: 299 SAIPL-QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKH------L 351
IPL + P IL GD QLP S + A RSL ERL+ KH +
Sbjct: 384 CWIPLLKAP---KCILAGDHRQLPPTTVSHRAALAGLSRSLMERLA----EKHGAGVVRM 436
Query: 352 LSMQYRMHPSISFFPNSYFYENKILDAPTV 381
L++QYRMH +I + + Y + P+V
Sbjct: 437 LTVQYRMHQAIMCWASEAMYHGQFTSHPSV 466
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 41/210 (19%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHE--SRSKCHSVLRELWNSFKELNLPSAMNM 251
LE + HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 271 LESVQQHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKSNFRNEIKL------ 324
Query: 252 GLLKDF----------CFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298
L K+ + A ++ T AS+ L + + +V+DE AQ E+
Sbjct: 325 -LRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEAS 383
Query: 299 SAIPL-QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKH------L 351
IPL + P IL GD QLP S + A RSL ERL+ KH +
Sbjct: 384 CWIPLLKAP---KCILAGDHKQLPPTTVSHKAALAGLSRSLMERLA----EKHGAAVVRM 436
Query: 352 LSMQYRMHPSISFFPNSYFYENKILDAPTV 381
L++QYRMH +I+ + + Y ++ P+V
Sbjct: 437 LAVQYRMHQAITRWASEAMYHGQLTAHPSV 466
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 286 LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERL--S 343
+VIDE +Q E IP+ + I+ GD QLP V +S ++LFERL
Sbjct: 398 IVIDEGSQAMEPSCLIPIVKG--RKLIMAGDHKQLPPTV---LSENEELKKTLFERLIKK 452
Query: 344 YLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVR 382
Y S +L +QYRM+ I FPN FY NK+ +V+
Sbjct: 453 YPEFS-SILEIQYRMNEKIMEFPNKMFYNNKLKADESVK 490
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL +LVGD QLP +V+S+ + E SLF+RL
Sbjct: 759 FCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLER 816
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+ L++QYRM+ I N YE ++
Sbjct: 817 NQEAVVQLTVQYRMNSKIMALSNKLVYEGRL 847
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 26/199 (13%)
Query: 205 HSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLP-SAMNMGLLKDFCFTKAS 263
+++ +D SQ I K + K + +E WN K L +KD ++
Sbjct: 306 NTIVKDISQEID--KLIQENKKLKNYKQRKENWNEIKLLRKDLKKREFKTIKDLII-QSR 362
Query: 264 LIFCT--ASSSYKLHSVAMEQLKF-----LVIDEAAQLKESESAIPLQLPCIQHA----- 311
++ T SSS +L S+ + F L+IDE +Q E + IPL I H
Sbjct: 363 IVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPL----IAHQNQFHK 418
Query: 312 -ILVGDECQLPAMVESSVSGEAYFG--RSLFERLSYLGHSKHL---LSMQYRMHPSISFF 365
+L GD QLP +++ +LF+R+ + + + L++QYRM+ I F
Sbjct: 419 LVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEF 478
Query: 366 PNSYFYENKILDAPTVRKR 384
P+ Y K+L TV R
Sbjct: 479 PSHSMYNGKLLADATVANR 497
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Query: 199 LEELFSHSVD-----EDFSQSIVDIKYTLHES--RSKCHSVLRELWNSFKELNL-----P 246
LE + HS+D D +Q + DI+ + + ++K RE N E+ L
Sbjct: 272 LESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELK 331
Query: 247 SAMNMGLLKDFCFTKASLIFCT---ASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303
+L+ T A+++ T AS+ L + +VIDE AQ E+ IPL
Sbjct: 332 EREEAAMLESL--TSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPL 389
Query: 304 QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLS--YLGHSKHLLSMQYRMHPS 361
+ IL GD QLP S + A SL ERL+ Y L++QYRMH +
Sbjct: 390 LK--ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQA 447
Query: 362 ISFFPNSYFY 371
I + + Y
Sbjct: 448 IMRWASDTMY 457
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 259 FTKASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAILV-- 314
T+ L+ T S+ L++ + + F +++DEA Q E E+ I + C+ ++V
Sbjct: 513 LTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLA 572
Query: 315 GDECQLPAMVESSVSGEAYFGRSLFERL---SYL--GHSKHL--LSMQYRMHPSISFFPN 367
GD QL ++ S + G+S ERL Y G ++ L YR HP I P+
Sbjct: 573 GDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPS 632
Query: 368 SYFYENKIL----DAPTVRKRSYEKQFLPGPMYGPYAFINVFGGRE-EFIEHSCRNMVEV 422
FY+ +++ D +V FLP + P F + G E E S N +E+
Sbjct: 633 KLFYDGELVASKEDTDSVLA---SLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIEI 688
Query: 423 SVVMKILLNL 432
S V++ + L
Sbjct: 689 SKVIETIKRL 698
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
++ L++QYRM+ I N YE K+
Sbjct: 816 NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo
sapiens GN=DNA2 PE=1 SV=3
Length = 1060
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+ L++QYRM+ I N YE K+
Sbjct: 816 NKSAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLER 815
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+ L++QYRM+ I N YE K+
Sbjct: 816 NESAVVQLTIQYRMNRKIMSLSNKLTYEGKL 846
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
PE=2 SV=1
Length = 1860
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 264 LIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQ-HAILVGDECQL 320
++ T S+S L + +E F +++DEAAQ E E+ +PL L +L GD QL
Sbjct: 760 VVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGDHMQL 819
Query: 321 PAMVESSVSGEAYFGRSLFERLSYLGHSKH----LLSMQYRMHPSISFFPNSYFYENKIL 376
V S + E SL +RL S++ LL YR H +I + + FYE K++
Sbjct: 820 SPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLM 879
Query: 377 DAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEH----SCRNMVEVSVVMKILLNL 432
+ K+ K F P + F R E ++ + N EV +++ + +
Sbjct: 880 AS---GKQPPHKDFYP---------LTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEM 927
Query: 433 NLEVPKTWA 441
+ P +W
Sbjct: 928 RKKWPVSWG 936
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHAI-LVGDE 317
K ++ T S+S L + +E F +++DEAAQ E E+ +PL L I L GD
Sbjct: 764 KHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDH 823
Query: 318 CQLPAMVESSVSGEAYFGRSLFERL--SYLGH--SKHLLSMQYRMHPSISFFPNSYFYEN 373
QL V S + E SL +RL Y + LL YR H +I + + FYE
Sbjct: 824 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 883
Query: 374 KILDAPTVRKRSYEKQFLP 392
K++ + K+ K F P
Sbjct: 884 KLMAS---GKQPAHKDFYP 899
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 250 NMGLLKDFCFTKASLIFCTASSSYKLHSVAME-QLKFLVIDEAAQLKESESAIPLQLPCI 308
++ +LKD A ++ T + + K + + + + ++++EAA++ E+ + L C
Sbjct: 971 DLHILKD-----AQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKAC- 1024
Query: 309 QHAILVGDECQL-PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPN 367
QH IL+GD QL P+ ++ SLFERL + L+ Q+RM P I+
Sbjct: 1025 QHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLT 1084
Query: 368 SYFYENKILDAPTVRKRSYEK 388
+ Y++ + + P+V K YEK
Sbjct: 1085 PHIYQD-LENHPSVLK--YEK 1102
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 250 NMGLLKDFCFTKASLIFCTASSSYKLHSVAME-QLKFLVIDEAAQLKESESAIPLQLPCI 308
++ +LKD A ++ T + + K + + + + ++++EAA++ E+ + L C
Sbjct: 964 DLHILKD-----AEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKAC- 1017
Query: 309 QHAILVGDECQL-PAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPN 367
QH IL+GD QL P+ ++ SLFERL + L+ Q+RM P I+
Sbjct: 1018 QHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLT 1077
Query: 368 SYFYENKILDAPTVRKRSYEK 388
+ Y++ + + P+V K YE+
Sbjct: 1078 PHIYQD-LENHPSVLK--YEQ 1095
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 261 KASLIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQLPCIQHA--ILVGD 316
K ++ T ++S L + +E F +++DEAAQ E E+ +PL L Q+ +L GD
Sbjct: 764 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLAL-ATQNTRIVLAGD 822
Query: 317 ECQLPAMVESSVSGEAYFGRSLFERL--SYLGH--SKHLLSMQYRMHPSISFFPNSYFYE 372
QL V S + E SL +RL Y + LL YR H +I + + FYE
Sbjct: 823 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYE 882
Query: 373 NKILDAPTVRKRSYEKQFLP 392
K++ + K+ K F P
Sbjct: 883 GKLMAS---GKQPAHKDFYP 899
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus
musculus GN=Dna2 PE=2 SV=2
Length = 1062
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY 344
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 759 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLER 816
Query: 345 LGHSKHLLSMQYRMHPSISFFPNSYFYENKI 375
+ L++QYRM+ I N Y K+
Sbjct: 817 NESAVVQLTVQYRMNRKIMSLSNKLTYAGKL 847
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 285 FLVIDEAAQLKESESAIPLQLPCIQHA---ILVGDECQLPAMVESSVSGEAYFGRSLFER 341
++++DEA+Q+ ++P+ L +++ I+VGD QLP +V++ + SLF+
Sbjct: 1182 YVILDEASQI-----SMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKT 1236
Query: 342 LSYLGHSKHL--LSMQYRMHPSISFFPNSYFYENKI 375
H + + L++QYRM I N Y+NK+
Sbjct: 1237 FCE-KHPESVAELTLQYRMCGDIVTLSNFLIYDNKL 1271
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 262 ASLIFCTASSSYKLHSVAMEQL--KFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319
A++I T + K + +E++ K I+EAA + E IP P ++ +L+GD Q
Sbjct: 683 ANVIGMTTTGLNKYRDI-LERINPKICFIEEAADVLEG-PIIPAVFPSLEQLVLIGDHKQ 740
Query: 320 L-PAMVESSVSGEAY-FGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYF 370
L P ++ + + S+FERL L+MQ RMHP I +S +
Sbjct: 741 LRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVY 793
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
Query: 253 LLKDFCFTKAS----------------LIFCTASSSYKLHSV-AMEQLKFLVIDEAAQLK 295
L+K+FC T+ + ++ C++ Y HS+ + + +IDEA+Q+
Sbjct: 1014 LVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVY--HSIFNKRKFDYCIIDEASQIP 1071
Query: 296 ESESAIPLQLPCIQHAILVGDECQLPAMVESS-VSGEAYFGRSLFERLSYLGHSKHLLSM 354
PLQL + +LVGD QLP +V++S S + + L +
Sbjct: 1072 LPICLGPLQLA--EKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRL 1129
Query: 355 QYRMHPSISFFPNSYFY-ENKILDAPTVRKRSYEKQFLP 392
QYRM+ I+ + Y N + + T+ S +K LP
Sbjct: 1130 QYRMNEDINSLSSELIYGGNLVCGSKTI---SQKKLILP 1165
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 75/191 (39%), Gaps = 21/191 (10%)
Query: 264 LIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIP---LQLPCIQHAILVGDEC 318
++ CT ++ +L S F + +DEA E E I L +L GD
Sbjct: 645 IVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPK 704
Query: 319 QLPAMVESSVSGEAYFGRSLFERL------------SYLGHSKHLLSMQYRMHPSISFFP 366
QL ++ S + + G SL ERL + L YR HPSI P
Sbjct: 705 QLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVP 764
Query: 367 NSYFYENKILD-APTVRKRSY-EKQFLPGPMYGPYAFINVFGGRE-EFIEHSCRNMVEVS 423
N FY+N++ A + R Y + LP + P F V G E E S N E+
Sbjct: 765 NELFYDNELKACADEISSRQYCTWEHLPKRGF-PVIFHGVVGKDERESTSPSFFNTSEID 823
Query: 424 VVMKILLNLNL 434
+M L L L
Sbjct: 824 KIMDYLKKLLL 834
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 264 LIFCTASSSYKLHSVAMEQLKF--LVIDEAAQLKESESAIPLQL--PCIQHAILVGDECQ 319
+I T SSS + + + F + +DEA Q E E IPL L +L GD Q
Sbjct: 859 IIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQ 918
Query: 320 LPAMVESSVSGEAYFGRSLFERL-------------SYLGHSKHLLSMQ----YRMHPSI 362
L +++S ++ S ERL G LL + YR H ++
Sbjct: 919 LGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEAL 978
Query: 363 SFFPNSYFY--ENKILDAPTV 381
P+ FY E ++ PTV
Sbjct: 979 LMLPSRLFYHRELEVCADPTV 999
>sp|B0TDI1|ADDB_HELMI ATP-dependent helicase/deoxyribonuclease subunit B
OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=addB PE=3 SV=1
Length = 1224
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 527 FILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTER 584
FILGR+GTGK+ ++ Q K + V T T R + + GLGGT R
Sbjct: 5 FILGRAGTGKSRACLDEIAQELKGSPQGPPLLFLVPEQATFQTERALATMPGLGGTIR 62
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 229 CHSVLRELWNSFKELNLPSAMNMGL--LKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKF 285
C +++++ +E + GL K +A +I T + ++ K H + K+
Sbjct: 997 CFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGFKY 1056
Query: 286 --LVIDEAAQLKESESAIPLQLPCIQHA-------ILVGDECQLPAMVES-SVSGEAYFG 335
++++EAAQ+ E E+ IPL L Q I++GD QLP ++++ + +
Sbjct: 1057 DNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNME 1116
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYEN 373
+SLF R +G L Q R S+ N + Y+N
Sbjct: 1117 QSLFTRFVRVGVPTVDLDAQGRARASLCNLYN-WRYKN 1153
>sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1
PE=2 SV=4
Length = 2925
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 483 LMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMI-LFPRS---TFILGRSGTGKTT 538
+MKF+ S+ + ++L+D ++ PF V + + +I L PR ++GRSGTGKTT
Sbjct: 982 IMKFHSFSTNMAFNILNDTTA-TVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTT 1040
Query: 539 ILTMKLFQ 546
+L++
Sbjct: 1041 CCLYRLWK 1048
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 23/153 (15%)
Query: 280 MEQLKFLVIDEAAQLKESESAIPLQL---------PCIQHAILVGDECQLPAMVESSVSG 330
++ + IDEA E ES + + P Q +L GD QL ++ S ++
Sbjct: 636 IDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQ-LVLAGDPRQLGPVLRSPLTQ 694
Query: 331 EAYFGRSLFERLSYL---------GHSKHLLS---MQYRMHPSISFFPNSYFYENKILDA 378
+ G SL ERL G+ ++ YR HP+I PN +YE ++
Sbjct: 695 KHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 754
Query: 379 PTVRKRSYEKQFLPGPMYG-PYAFINVFGGREE 410
V R ++ P G P F V G E
Sbjct: 755 ADVVDRERFCRWAGLPRQGFPIIFHGVMGKDER 787
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 229 CHSVLRELWNSFKELNLPSAMNMGL--LKDFCFTKASLIFCTAS-SSYKLHSVAMEQLKF 285
C +++++ +E + GL K +A +I T + ++ K H + K+
Sbjct: 1001 CFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGFKY 1060
Query: 286 --LVIDEAAQLKESESAIPLQLPCIQHA-------ILVGDECQLPAMVES-SVSGEAYFG 335
++++EAAQ+ E E+ IPL L Q I++GD QLP ++++ + +
Sbjct: 1061 DNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNME 1120
Query: 336 RSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYEN 373
+SLF R +G L Q R S+ N + Y+N
Sbjct: 1121 QSLFTRFVRVGVPTVDLDAQGRARASLCNLYN-WRYKN 1157
>sp|B9DVF3|DNAK_STRU0 Chaperone protein DnaK OS=Streptococcus uberis (strain ATCC BAA-854
/ 0140J) GN=dnaK PE=3 SV=1
Length = 608
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 209 EDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCT 268
+DF Q I+D Y + E + + L + + + L + L T+ SL F T
Sbjct: 200 DDFDQKIID--YLVEEFKKENGIDLSQDKMALQRLKDAAEKAKKDLSGVTQTQISLPFIT 257
Query: 269 ASSSYKLH-SVAMEQLKF------LVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLP 321
A ++ LH V++ + KF LV ++ + S L L I ILVG ++P
Sbjct: 258 AGAAGPLHLEVSLTRAKFDDLTRDLVERTKVPVRRALSDAGLSLSEIDEVILVGGSTRIP 317
Query: 322 AMVES 326
A+VE+
Sbjct: 318 AVVEA 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,346,900
Number of Sequences: 539616
Number of extensions: 9513654
Number of successful extensions: 27300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 27183
Number of HSP's gapped (non-prelim): 119
length of query: 610
length of database: 191,569,459
effective HSP length: 123
effective length of query: 487
effective length of database: 125,196,691
effective search space: 60970788517
effective search space used: 60970788517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)