Query 038017
Match_columns 610
No_of_seqs 418 out of 1690
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1803 DNA helicase [Replicat 100.0 2.4E-46 5.3E-51 403.2 16.0 278 224-523 308-604 (649)
2 KOG1802 RNA helicase nonsense 100.0 1.5E-45 3.4E-50 396.6 10.9 282 230-523 513-813 (935)
3 TIGR00376 DNA helicase, putati 100.0 1.2E-39 2.5E-44 370.6 14.8 257 251-528 334-612 (637)
4 KOG1801 tRNA-splicing endonucl 100.0 1.6E-40 3.4E-45 386.0 4.9 280 245-540 494-795 (827)
5 KOG1805 DNA replication helica 100.0 5.7E-39 1.2E-43 359.0 7.7 285 255-560 770-1086(1100)
6 KOG1807 Helicases [Replication 100.0 2.9E-34 6.3E-39 313.6 10.0 309 198-528 639-957 (1025)
7 COG1112 Superfamily I DNA and 100.0 7.6E-31 1.6E-35 306.3 12.5 257 251-523 458-726 (767)
8 PF13087 AAA_12: AAA domain; P 99.9 2.7E-23 5.9E-28 203.6 4.8 179 334-524 1-198 (200)
9 KOG1804 RNA helicase [RNA proc 99.8 1.4E-21 3E-26 221.4 5.2 255 258-528 416-701 (775)
10 KOG1806 DEAD box containing he 99.8 9.1E-20 2E-24 205.2 5.3 356 150-522 844-1240(1320)
11 PF13086 AAA_11: AAA domain; P 99.6 3.4E-16 7.4E-21 155.4 2.7 76 251-327 160-236 (236)
12 PF13604 AAA_30: AAA domain; P 98.1 1.5E-06 3.2E-11 85.8 2.9 84 281-375 92-178 (196)
13 TIGR01447 recD exodeoxyribonuc 97.7 3.8E-05 8.3E-10 87.7 5.2 89 281-369 258-366 (586)
14 TIGR01448 recD_rel helicase, p 97.5 0.00012 2.5E-09 85.9 6.3 78 282-369 416-497 (720)
15 PRK10875 recD exonuclease V su 97.3 0.00019 4.2E-09 82.3 5.0 93 281-374 264-381 (615)
16 KOG1804 RNA helicase [RNA proc 97.3 0.00022 4.7E-09 82.6 4.2 185 255-448 237-444 (775)
17 PF01443 Viral_helicase1: Vira 97.2 0.00031 6.8E-09 70.3 4.2 81 281-369 61-141 (234)
18 TIGR02768 TraA_Ti Ti-type conj 97.0 0.00058 1.2E-08 80.4 4.6 67 282-359 439-507 (744)
19 PRK13826 Dtr system oriT relax 96.8 0.0011 2.3E-08 80.3 4.9 68 283-361 469-538 (1102)
20 PRK14712 conjugal transfer nic 96.8 0.0015 3.1E-08 81.5 6.0 76 282-367 930-1008(1623)
21 PRK13889 conjugal transfer rel 96.8 0.0017 3.7E-08 78.0 6.0 83 282-375 433-517 (988)
22 PF05970 PIF1: PIF1-like helic 96.4 0.0011 2.5E-08 71.6 1.3 45 282-327 102-160 (364)
23 PRK13709 conjugal transfer nic 96.4 0.0031 6.6E-08 79.6 5.0 82 282-374 1062-1146(1747)
24 TIGR01073 pcrA ATP-dependent D 95.9 0.048 1E-06 64.4 11.1 85 281-373 208-296 (726)
25 PRK11054 helD DNA helicase IV; 95.3 0.22 4.7E-06 58.4 13.5 82 282-370 430-516 (684)
26 PRK11773 uvrD DNA-dependent he 95.0 0.054 1.2E-06 63.9 7.8 86 281-373 212-300 (721)
27 PF00580 UvrD-helicase: UvrD/R 95.0 0.02 4.3E-07 59.3 3.7 66 512-608 1-67 (315)
28 TIGR00609 recB exodeoxyribonuc 95.0 0.028 6.1E-07 69.1 5.4 84 281-371 295-381 (1087)
29 TIGR02760 TraI_TIGR conjugativ 94.9 0.027 5.8E-07 72.8 5.2 76 282-367 1112-1192(1960)
30 TIGR02760 TraI_TIGR conjugativ 94.9 0.027 5.9E-07 72.8 5.2 66 282-357 529-596 (1960)
31 PRK10919 ATP-dependent DNA hel 94.6 0.047 1E-06 63.8 5.8 84 281-371 206-292 (672)
32 PRK13909 putative recombinatio 94.4 0.038 8.1E-07 66.9 4.4 84 281-371 327-421 (910)
33 PF09848 DUF2075: Uncharacteri 94.4 0.051 1.1E-06 58.5 5.0 89 279-376 80-185 (352)
34 COG1074 RecB ATP-dependent exo 94.4 0.097 2.1E-06 64.8 8.0 84 281-371 377-467 (1139)
35 TIGR01075 uvrD DNA helicase II 94.2 0.059 1.3E-06 63.6 5.4 85 281-372 207-294 (715)
36 TIGR02785 addA_Gpos recombinat 94.1 0.05 1.1E-06 67.9 4.9 84 281-371 387-481 (1232)
37 TIGR02784 addA_alphas double-s 93.8 0.055 1.2E-06 67.1 4.3 85 281-372 390-496 (1141)
38 PRK10876 recB exonuclease V su 93.7 0.092 2E-06 65.2 6.0 85 281-372 376-463 (1181)
39 TIGR01074 rep ATP-dependent DN 93.5 0.097 2.1E-06 61.1 5.4 83 281-371 205-291 (664)
40 PRK10536 hypothetical protein; 91.9 0.13 2.8E-06 52.9 3.3 39 283-321 177-216 (262)
41 COG0210 UvrD Superfamily I DNA 88.4 2 4.4E-05 50.1 9.7 137 281-444 212-353 (655)
42 cd00046 DEXDc DEAD-like helica 84.8 2.2 4.7E-05 37.5 5.8 51 525-608 2-52 (144)
43 COG0507 RecD ATP-dependent exo 84.6 0.53 1.2E-05 55.3 2.2 45 283-327 408-453 (696)
44 PF02562 PhoH: PhoH-like prote 83.8 1.2 2.6E-05 44.4 3.9 62 256-321 97-159 (205)
45 TIGR01074 rep ATP-dependent DN 83.5 1.3 2.7E-05 51.9 4.6 34 512-545 2-36 (664)
46 PF13245 AAA_19: Part of AAA d 83.4 3.1 6.8E-05 34.5 5.7 50 526-606 13-62 (76)
47 TIGR01073 pcrA ATP-dependent D 82.4 1.4 3.1E-05 52.1 4.5 34 512-545 5-39 (726)
48 TIGR01075 uvrD DNA helicase II 81.4 1.7 3.7E-05 51.3 4.7 34 512-545 5-39 (715)
49 PRK11773 uvrD DNA-dependent he 80.9 1.7 3.7E-05 51.4 4.5 34 512-545 10-44 (721)
50 PRK04837 ATP-dependent RNA hel 80.9 2.7 5.9E-05 46.2 5.8 65 520-609 42-106 (423)
51 PF00580 UvrD-helicase: UvrD/R 79.8 0.8 1.7E-05 47.3 1.1 39 281-320 255-295 (315)
52 PRK11192 ATP-dependent RNA hel 79.7 2.6 5.6E-05 46.5 5.2 59 523-609 38-96 (434)
53 PRK10919 ATP-dependent DNA hel 78.5 2.3 5.1E-05 49.9 4.5 34 512-545 3-37 (672)
54 PRK11776 ATP-dependent RNA hel 77.9 3.9 8.5E-05 45.5 5.9 54 523-608 41-94 (460)
55 PLN00206 DEAD-box ATP-dependen 77.6 4.6 9.9E-05 45.9 6.4 73 512-609 144-219 (518)
56 PRK01172 ski2-like helicase; P 77.5 1.7 3.7E-05 50.9 3.1 65 509-608 20-87 (674)
57 PRK10590 ATP-dependent RNA hel 77.4 4.2 9.1E-05 45.3 6.0 60 523-608 38-97 (456)
58 COG1125 OpuBA ABC-type proline 77.3 1.6 3.4E-05 44.9 2.3 20 526-547 30-49 (309)
59 PRK01297 ATP-dependent RNA hel 77.1 4.2 9.1E-05 45.5 5.9 62 523-609 124-185 (475)
60 smart00382 AAA ATPases associa 77.1 1.4 3.1E-05 38.5 1.8 17 524-540 3-19 (148)
61 PF00270 DEAD: DEAD/DEAH box h 76.8 5.8 0.00013 36.9 5.9 53 523-608 14-66 (169)
62 PRK04537 ATP-dependent RNA hel 75.0 2.3 5E-05 49.0 3.1 64 520-608 43-106 (572)
63 TIGR00643 recG ATP-dependent D 74.7 2.7 6E-05 48.9 3.7 66 508-608 232-306 (630)
64 smart00487 DEXDc DEAD-like hel 74.2 6 0.00013 37.0 5.4 52 524-608 25-76 (201)
65 COG4525 TauB ABC-type taurine 74.0 2 4.4E-05 42.6 2.0 17 522-538 30-46 (259)
66 cd00268 DEADc DEAD-box helicas 73.7 7.9 0.00017 37.5 6.2 56 523-608 36-91 (203)
67 PRK10917 ATP-dependent DNA hel 73.1 3.7 8.1E-05 48.3 4.3 66 508-608 258-332 (681)
68 PRK11054 helD DNA helicase IV; 72.8 4.1 9E-05 47.9 4.6 35 510-544 195-230 (684)
69 COG3973 Superfamily I DNA and 71.8 5.2 0.00011 45.7 4.8 38 512-551 213-252 (747)
70 COG2884 FtsE Predicted ATPase 71.7 3.4 7.3E-05 40.8 2.9 31 508-548 21-51 (223)
71 PF05127 Helicase_RecD: Helica 71.7 3 6.4E-05 40.6 2.5 76 282-370 90-174 (177)
72 COG1116 TauB ABC-type nitrate/ 71.4 3.2 6.8E-05 42.5 2.8 21 524-546 30-50 (248)
73 COG3842 PotA ABC-type spermidi 70.8 2.5 5.5E-05 45.5 2.0 20 525-546 33-52 (352)
74 PF13207 AAA_17: AAA domain; P 70.6 2.4 5.2E-05 37.5 1.6 21 526-548 2-22 (121)
75 PTZ00424 helicase 45; Provisio 70.5 6.7 0.00014 42.5 5.3 54 523-608 65-118 (401)
76 PHA03372 DNA packaging termina 69.2 7.7 0.00017 44.6 5.4 88 262-366 282-372 (668)
77 cd00009 AAA The AAA+ (ATPases 67.9 3.3 7.2E-05 36.7 1.9 17 523-539 19-35 (151)
78 PF13401 AAA_22: AAA domain; P 67.7 2.9 6.3E-05 37.3 1.5 18 524-541 5-22 (131)
79 PTZ00110 helicase; Provisional 67.5 8.5 0.00018 44.1 5.5 63 520-609 164-226 (545)
80 COG3839 MalK ABC-type sugar tr 66.0 4.4 9.5E-05 43.5 2.6 20 525-546 31-50 (338)
81 COG1875 NYN ribonuclease and A 65.9 13 0.00027 40.3 5.9 42 283-324 352-395 (436)
82 PRK10078 ribose 1,5-bisphospho 65.9 3.6 7.9E-05 39.8 1.9 21 523-545 2-22 (186)
83 PF00004 AAA: ATPase family as 64.7 3.8 8.2E-05 36.3 1.6 14 526-539 1-14 (132)
84 KOG0330 ATP-dependent RNA heli 64.6 9.5 0.00021 41.4 4.7 55 523-609 98-152 (476)
85 PF04851 ResIII: Type III rest 64.1 13 0.00029 34.7 5.4 45 524-606 26-70 (184)
86 cd00820 PEPCK_HprK Phosphoenol 63.8 4.9 0.00011 35.8 2.1 20 525-544 17-36 (107)
87 TIGR00580 mfd transcription-re 62.6 8.6 0.00019 46.8 4.5 66 508-608 448-522 (926)
88 COG1126 GlnQ ABC-type polar am 62.3 5.1 0.00011 40.3 2.1 22 523-546 28-49 (240)
89 TIGR02881 spore_V_K stage V sp 62.1 4.5 9.8E-05 41.5 1.8 16 525-540 44-59 (261)
90 PF13555 AAA_29: P-loop contai 62.0 5.3 0.00012 32.0 1.8 19 525-543 25-43 (62)
91 PF04665 Pox_A32: Poxvirus A32 61.9 6 0.00013 40.4 2.6 22 525-546 15-36 (241)
92 PF13238 AAA_18: AAA domain; P 60.6 4.9 0.00011 35.4 1.6 15 526-540 1-15 (129)
93 PRK13709 conjugal transfer nic 60.5 6.9 0.00015 50.5 3.3 39 283-321 501-541 (1747)
94 PF02562 PhoH: PhoH-like prote 60.2 9 0.0002 38.2 3.5 20 526-545 22-41 (205)
95 COG1117 PstB ABC-type phosphat 59.5 6.5 0.00014 39.6 2.3 20 526-547 36-55 (253)
96 KOG0340 ATP-dependent RNA heli 59.4 12 0.00025 40.3 4.2 56 522-609 43-98 (442)
97 cd00046 DEXDc DEAD-like helica 59.0 10 0.00022 33.1 3.3 42 257-298 75-119 (144)
98 cd01918 HprK_C HprK/P, the bif 58.7 9 0.0002 36.2 3.0 24 519-542 10-33 (149)
99 COG3638 ABC-type phosphate/pho 58.7 7.5 0.00016 39.6 2.6 22 524-547 31-52 (258)
100 COG1136 SalX ABC-type antimicr 58.5 5.8 0.00013 40.1 1.8 16 523-538 31-46 (226)
101 PF13086 AAA_11: AAA domain; P 58.3 5.7 0.00012 38.8 1.8 17 526-542 20-36 (236)
102 PRK08118 topology modulation p 58.1 5.9 0.00013 37.9 1.7 20 526-547 4-23 (167)
103 PF13191 AAA_16: AAA ATPase do 57.5 5.4 0.00012 37.7 1.4 18 524-541 25-42 (185)
104 PF13671 AAA_33: AAA domain; P 57.3 6 0.00013 35.9 1.6 15 526-540 2-16 (143)
105 COG1474 CDC6 Cdc6-related prot 56.6 7.3 0.00016 42.3 2.3 17 524-540 43-59 (366)
106 KOG0346 RNA helicase [RNA proc 56.5 23 0.00049 39.2 5.9 72 223-294 107-182 (569)
107 TIGR03420 DnaA_homol_Hda DnaA 56.2 6.9 0.00015 38.7 1.9 20 523-542 38-57 (226)
108 PF07728 AAA_5: AAA domain (dy 56.1 6.1 0.00013 35.9 1.4 15 526-540 2-16 (139)
109 PF00910 RNA_helicase: RNA hel 55.4 6.8 0.00015 34.4 1.5 17 526-542 1-17 (107)
110 PF13604 AAA_30: AAA domain; P 55.3 3.5 7.6E-05 40.5 -0.4 15 526-540 21-35 (196)
111 PRK06526 transposase; Provisio 55.1 7.3 0.00016 40.1 1.9 19 523-541 98-116 (254)
112 cd00071 GMPK Guanosine monopho 54.2 9.3 0.0002 35.2 2.3 20 526-547 2-21 (137)
113 cd01124 KaiC KaiC is a circadi 54.1 10 0.00023 36.0 2.8 21 525-545 1-21 (187)
114 PRK07261 topology modulation p 54.0 7.5 0.00016 37.3 1.7 15 526-540 3-17 (171)
115 TIGR02880 cbbX_cfxQ probable R 53.8 7.5 0.00016 40.6 1.8 16 525-540 60-75 (284)
116 TIGR02322 phosphon_PhnN phosph 53.5 7.7 0.00017 37.0 1.7 15 526-540 4-18 (179)
117 PF00005 ABC_tran: ABC transpo 53.1 9.7 0.00021 34.3 2.2 22 523-546 11-32 (137)
118 PF00448 SRP54: SRP54-type pro 51.9 7.5 0.00016 38.3 1.4 20 525-545 3-22 (196)
119 PRK10689 transcription-repair 51.8 16 0.00035 45.6 4.5 66 508-608 597-671 (1147)
120 PRK11634 ATP-dependent RNA hel 51.5 26 0.00057 40.9 5.9 54 523-608 43-96 (629)
121 TIGR02928 orc1/cdc6 family rep 51.5 8.9 0.00019 41.0 2.0 18 523-540 40-57 (365)
122 PRK00300 gmk guanylate kinase; 51.4 9.2 0.0002 37.3 1.9 21 524-546 6-26 (205)
123 PRK09401 reverse gyrase; Revie 51.2 16 0.00035 45.7 4.3 66 509-609 78-146 (1176)
124 PF05729 NACHT: NACHT domain 51.0 9.9 0.00021 35.0 2.0 15 526-540 3-17 (166)
125 TIGR03263 guanyl_kin guanylate 50.5 9.5 0.00021 36.3 1.8 20 525-546 3-22 (180)
126 cd03297 ABC_ModC_molybdenum_tr 50.2 11 0.00024 37.2 2.3 29 507-546 16-44 (214)
127 PF05496 RuvB_N: Holliday junc 50.1 8.8 0.00019 38.9 1.5 23 525-549 52-74 (233)
128 cd02019 NK Nucleoside/nucleoti 50.1 10 0.00022 30.5 1.7 14 526-539 2-15 (69)
129 KOG0389 SNF2 family DNA-depend 49.9 19 0.00041 42.5 4.2 69 250-320 485-565 (941)
130 TIGR01313 therm_gnt_kin carboh 49.8 8.9 0.00019 36.0 1.5 14 527-540 2-15 (163)
131 CHL00181 cbbX CbbX; Provisiona 49.7 9.4 0.0002 40.0 1.8 16 525-540 61-76 (287)
132 cd01120 RecA-like_NTPases RecA 49.5 9.8 0.00021 34.7 1.7 16 526-541 2-17 (165)
133 PRK00131 aroK shikimate kinase 49.3 11 0.00023 35.4 1.9 17 524-540 5-21 (175)
134 PRK08939 primosomal protein Dn 48.7 27 0.00059 36.9 5.1 15 524-538 157-171 (306)
135 KOG0084 GTPase Rab1/YPT1, smal 48.4 12 0.00025 37.1 2.0 18 526-544 12-29 (205)
136 PRK15177 Vi polysaccharide exp 48.3 12 0.00026 37.1 2.2 22 523-546 13-34 (213)
137 PRK10751 molybdopterin-guanine 48.2 13 0.00029 36.0 2.4 21 526-546 9-31 (173)
138 PRK03992 proteasome-activating 48.0 11 0.00024 41.2 2.0 18 523-540 165-182 (389)
139 smart00487 DEXDc DEAD-like hel 47.9 36 0.00078 31.6 5.4 39 258-296 101-143 (201)
140 TIGR02785 addA_Gpos recombinat 47.8 21 0.00045 45.1 4.6 64 512-607 2-66 (1232)
141 PF13476 AAA_23: AAA domain; P 47.6 13 0.00027 35.5 2.2 23 524-546 20-42 (202)
142 TIGR01242 26Sp45 26S proteasom 47.5 11 0.00024 40.7 1.9 18 523-540 156-173 (364)
143 PRK09183 transposase/IS protei 47.3 11 0.00025 38.7 1.9 20 523-542 102-121 (259)
144 PRK02362 ski2-like helicase; P 47.3 28 0.00061 41.4 5.4 63 512-609 24-90 (737)
145 PRK00411 cdc6 cell division co 46.9 11 0.00025 40.6 2.0 19 523-541 55-73 (394)
146 TIGR02640 gas_vesic_GvpN gas v 46.7 12 0.00026 38.5 2.0 20 523-542 21-40 (262)
147 KOG0343 RNA Helicase [RNA proc 46.5 12 0.00027 42.3 2.1 66 510-603 90-158 (758)
148 TIGR03878 thermo_KaiC_2 KaiC d 46.3 18 0.00039 37.2 3.2 23 523-545 36-58 (259)
149 PRK09825 idnK D-gluconate kina 46.1 12 0.00026 36.1 1.8 17 524-540 4-20 (176)
150 PTZ00454 26S protease regulato 45.9 12 0.00026 41.1 1.9 18 523-540 179-196 (398)
151 PHA00729 NTP-binding motif con 45.8 11 0.00025 38.0 1.6 18 525-542 19-36 (226)
152 PRK06620 hypothetical protein; 45.5 12 0.00026 37.3 1.7 17 524-540 45-61 (214)
153 TIGR01360 aden_kin_iso1 adenyl 45.4 13 0.00027 35.5 1.8 15 526-540 6-20 (188)
154 COG1124 DppF ABC-type dipeptid 45.4 14 0.0003 37.8 2.1 18 523-540 33-50 (252)
155 PRK05973 replicative DNA helic 45.3 13 0.00028 37.9 1.9 34 512-545 51-86 (237)
156 PRK10590 ATP-dependent RNA hel 45.1 38 0.00082 37.7 5.8 41 257-297 121-164 (456)
157 PRK10536 hypothetical protein; 45.0 14 0.0003 38.3 2.0 21 525-545 76-96 (262)
158 cd01131 PilT Pilus retraction 45.0 12 0.00027 36.6 1.7 16 526-541 4-19 (198)
159 PRK08084 DNA replication initi 44.9 13 0.00028 37.6 1.9 16 525-540 47-62 (235)
160 PRK14738 gmk guanylate kinase; 44.8 12 0.00027 36.9 1.6 16 525-540 15-30 (206)
161 COG1127 Ttg2A ABC-type transpo 44.8 13 0.00027 38.1 1.7 17 523-539 34-50 (263)
162 PF08477 Miro: Miro-like prote 44.8 13 0.00028 32.4 1.6 21 526-547 2-22 (119)
163 COG0563 Adk Adenylate kinase a 44.7 13 0.00029 36.1 1.8 27 526-554 3-30 (178)
164 cd01130 VirB11-like_ATPase Typ 44.6 13 0.00029 35.9 1.8 18 523-540 25-42 (186)
165 KOG0745 Putative ATP-dependent 44.5 19 0.00041 39.9 3.0 31 508-538 211-241 (564)
166 PF01695 IstB_IS21: IstB-like 44.3 13 0.00028 36.0 1.7 19 523-541 47-65 (178)
167 TIGR03499 FlhF flagellar biosy 44.1 13 0.00028 38.7 1.8 19 523-541 194-212 (282)
168 PF07475 Hpr_kinase_C: HPr Ser 43.9 17 0.00038 35.1 2.4 27 518-544 13-39 (171)
169 PRK13767 ATP-dependent helicas 43.9 39 0.00085 41.1 6.0 59 522-606 46-104 (876)
170 PRK08233 hypothetical protein; 43.8 13 0.00029 35.1 1.7 15 526-540 6-20 (182)
171 TIGR03015 pepcterm_ATPase puta 43.8 14 0.00029 37.6 1.8 17 525-541 45-61 (269)
172 PHA03333 putative ATPase subun 43.7 37 0.0008 39.9 5.4 37 281-317 293-331 (752)
173 cd03292 ABC_FtsE_transporter F 43.6 14 0.0003 36.3 1.8 22 523-546 27-48 (214)
174 PF00176 SNF2_N: SNF2 family N 43.5 11 0.00023 38.7 1.0 64 257-322 103-177 (299)
175 PRK08903 DnaA regulatory inact 43.3 14 0.00031 36.6 1.9 17 524-540 43-59 (227)
176 TIGR01166 cbiO cobalt transpor 43.2 14 0.00031 35.6 1.8 22 523-546 18-39 (190)
177 cd00464 SK Shikimate kinase (S 43.1 15 0.00032 33.7 1.8 16 525-540 1-16 (154)
178 cd03300 ABC_PotA_N PotA is an 43.1 17 0.00037 36.4 2.4 23 523-547 26-48 (232)
179 PRK05480 uridine/cytidine kina 43.0 14 0.0003 36.3 1.7 15 526-540 9-23 (209)
180 TIGR01359 UMP_CMP_kin_fam UMP- 43.0 14 0.00031 35.2 1.7 16 526-541 2-17 (183)
181 PRK06217 hypothetical protein; 43.0 14 0.0003 35.6 1.7 15 526-540 4-18 (183)
182 PRK06893 DNA replication initi 43.0 14 0.0003 37.2 1.7 14 525-538 41-54 (229)
183 cd03255 ABC_MJ0796_Lo1CDE_FtsE 42.8 14 0.00031 36.3 1.8 22 523-546 30-51 (218)
184 cd03238 ABC_UvrA The excision 42.8 15 0.00032 35.6 1.8 18 523-540 21-38 (176)
185 PRK11192 ATP-dependent RNA hel 42.7 44 0.00095 36.8 5.8 42 255-296 117-161 (434)
186 PRK00080 ruvB Holliday junctio 42.6 14 0.0003 39.2 1.8 18 524-541 52-69 (328)
187 TIGR01186 proV glycine betaine 42.6 16 0.00034 39.7 2.2 23 523-547 19-41 (363)
188 cd03298 ABC_ThiQ_thiamine_tran 42.5 16 0.00036 35.8 2.2 21 524-546 25-45 (211)
189 KOG0962 DNA repair protein RAD 42.5 17 0.00036 45.2 2.5 26 514-539 17-43 (1294)
190 PTZ00361 26 proteosome regulat 42.4 14 0.00031 41.1 1.8 17 524-540 218-234 (438)
191 PF12775 AAA_7: P-loop contain 42.4 16 0.00034 38.0 2.0 22 523-544 33-54 (272)
192 TIGR03238 dnd_assoc_3 dnd syst 42.2 14 0.00031 41.4 1.8 19 523-541 32-50 (504)
193 TIGR00635 ruvB Holliday juncti 42.1 15 0.00032 38.3 1.9 17 524-540 31-47 (305)
194 PF00270 DEAD: DEAD/DEAH box h 42.0 18 0.00038 33.6 2.2 40 257-296 91-133 (169)
195 TIGR02673 FtsE cell division A 41.9 15 0.00033 36.0 1.8 22 523-546 28-49 (214)
196 PRK14274 phosphate ABC transpo 41.8 18 0.00039 36.8 2.4 23 523-547 38-60 (259)
197 PF10662 PduV-EutP: Ethanolami 41.8 15 0.00033 34.5 1.7 28 526-554 4-31 (143)
198 KOG0989 Replication factor C, 41.7 16 0.00036 38.6 2.0 17 526-542 60-76 (346)
199 KOG0334 RNA helicase [RNA proc 41.7 33 0.00071 41.6 4.7 64 519-609 398-461 (997)
200 KOG0991 Replication factor C, 41.6 16 0.00036 37.2 1.9 33 525-559 50-82 (333)
201 cd01394 radB RadB. The archaea 41.6 17 0.00036 35.9 2.1 23 523-545 19-41 (218)
202 smart00072 GuKc Guanylate kina 41.5 16 0.00035 35.2 1.9 15 524-538 3-17 (184)
203 cd03225 ABC_cobalt_CbiO_domain 41.4 15 0.00033 35.9 1.8 22 523-546 27-48 (211)
204 cd03261 ABC_Org_Solvent_Resist 41.4 16 0.00034 36.6 1.8 22 523-546 26-47 (235)
205 TIGR02237 recomb_radB DNA repa 41.2 16 0.00035 35.7 1.9 20 523-542 12-31 (209)
206 cd03258 ABC_MetN_methionine_tr 41.2 16 0.00034 36.5 1.8 23 523-547 31-53 (233)
207 PF13479 AAA_24: AAA domain 41.1 16 0.00035 36.2 1.9 18 525-542 5-22 (213)
208 PRK14737 gmk guanylate kinase; 41.1 15 0.00033 35.8 1.7 15 526-540 7-21 (186)
209 TIGR00960 3a0501s02 Type II (G 41.0 16 0.00035 35.9 1.8 22 523-546 29-50 (216)
210 TIGR01241 FtsH_fam ATP-depende 40.9 16 0.00035 41.2 2.0 17 523-539 88-104 (495)
211 PF00735 Septin: Septin; Inte 40.7 13 0.00028 38.9 1.1 14 525-538 6-19 (281)
212 cd02023 UMPK Uridine monophosp 40.7 16 0.00034 35.5 1.7 15 526-540 2-16 (198)
213 COG4148 ModC ABC-type molybdat 40.7 16 0.00035 38.3 1.8 15 525-539 26-40 (352)
214 COG2274 SunT ABC-type bacterio 40.6 19 0.00041 42.7 2.5 23 523-547 499-521 (709)
215 TIGR00176 mobB molybdopterin-g 40.5 22 0.00049 33.6 2.6 14 526-539 2-15 (155)
216 cd00227 CPT Chloramphenicol (C 40.5 17 0.00037 34.7 1.8 16 525-540 4-19 (175)
217 COG2256 MGS1 ATPase related to 40.5 16 0.00035 40.0 1.8 22 524-547 49-70 (436)
218 PRK05541 adenylylsulfate kinas 40.5 17 0.00036 34.6 1.8 16 525-540 9-24 (176)
219 TIGR01618 phage_P_loop phage n 40.5 16 0.00036 36.7 1.8 16 525-540 14-29 (220)
220 PRK14722 flhF flagellar biosyn 40.3 16 0.00035 39.8 1.8 19 523-541 137-155 (374)
221 PRK15064 ABC transporter ATP-b 40.2 22 0.00047 40.4 3.0 23 523-547 27-49 (530)
222 PF00625 Guanylate_kin: Guanyl 40.2 17 0.00037 34.9 1.8 17 523-539 2-18 (183)
223 PRK06762 hypothetical protein; 40.2 16 0.00036 34.2 1.7 15 526-540 5-19 (166)
224 TIGR03881 KaiC_arch_4 KaiC dom 40.1 23 0.00049 35.2 2.8 20 523-542 20-39 (229)
225 PHA03368 DNA packaging termina 39.8 28 0.0006 40.7 3.6 75 278-366 348-425 (738)
226 cd03293 ABC_NrtD_SsuB_transpor 39.7 20 0.00043 35.4 2.3 22 523-546 30-51 (220)
227 PRK08181 transposase; Validate 39.7 17 0.00038 37.7 1.9 17 523-539 106-122 (269)
228 COG1484 DnaC DNA replication p 39.7 46 0.001 34.2 5.0 17 523-539 105-121 (254)
229 PRK06547 hypothetical protein; 39.6 17 0.00037 35.0 1.7 15 526-540 18-32 (172)
230 COG1222 RPT1 ATP-dependent 26S 39.6 17 0.00037 39.2 1.8 16 523-538 185-200 (406)
231 PF08283 Gemini_AL1_M: Geminiv 39.6 17 0.00037 32.4 1.5 16 523-538 90-105 (106)
232 cd01428 ADK Adenylate kinase ( 39.4 17 0.00038 34.8 1.7 15 526-540 2-16 (194)
233 PRK05057 aroK shikimate kinase 39.4 18 0.0004 34.6 1.9 17 525-541 6-22 (172)
234 TIGR03608 L_ocin_972_ABC putat 39.3 18 0.00038 35.3 1.8 22 523-546 24-45 (206)
235 PRK03839 putative kinase; Prov 39.2 17 0.00037 34.7 1.6 20 526-547 3-22 (180)
236 KOG0987 DNA helicase PIF1/RRM3 39.2 23 0.00051 40.5 3.0 43 284-327 218-271 (540)
237 cd03269 ABC_putative_ATPase Th 39.0 18 0.00039 35.4 1.8 22 523-546 26-47 (210)
238 KOG0744 AAA+-type ATPase [Post 39.0 21 0.00045 38.2 2.3 24 517-540 171-194 (423)
239 PF12846 AAA_10: AAA-like doma 38.9 25 0.00054 35.8 2.9 20 525-545 3-22 (304)
240 PRK11147 ABC transporter ATPas 38.9 21 0.00046 41.6 2.7 23 523-547 29-51 (635)
241 cd03234 ABCG_White The White s 38.9 21 0.00045 35.5 2.3 22 524-547 34-55 (226)
242 PRK12899 secA preprotein trans 38.9 48 0.001 40.3 5.5 66 509-609 90-158 (970)
243 cd03235 ABC_Metallic_Cations A 38.8 18 0.00039 35.5 1.8 22 523-546 25-46 (213)
244 PRK04296 thymidine kinase; Pro 38.7 21 0.00045 34.8 2.2 22 525-546 4-25 (190)
245 TIGR02211 LolD_lipo_ex lipopro 38.7 18 0.0004 35.7 1.8 22 523-546 31-52 (221)
246 KOG2035 Replication factor C, 38.7 42 0.00092 35.2 4.4 19 526-544 37-55 (351)
247 PRK14240 phosphate transporter 38.6 21 0.00045 36.1 2.2 22 523-546 29-50 (250)
248 PRK14701 reverse gyrase; Provi 38.4 30 0.00065 44.8 4.0 64 510-608 78-144 (1638)
249 TIGR02315 ABC_phnC phosphonate 38.4 19 0.0004 36.2 1.8 22 523-546 28-49 (243)
250 cd03256 ABC_PhnC_transporter A 38.4 19 0.00041 36.1 1.9 22 523-546 27-48 (241)
251 cd03263 ABC_subfamily_A The AB 38.3 19 0.0004 35.6 1.8 23 523-547 28-50 (220)
252 cd03214 ABC_Iron-Siderophores_ 38.1 19 0.00042 34.5 1.8 22 523-546 25-46 (180)
253 cd03226 ABC_cobalt_CbiO_domain 38.0 19 0.00042 35.1 1.8 22 523-546 26-47 (205)
254 COG4098 comFA Superfamily II D 37.9 26 0.00056 37.7 2.7 59 229-295 157-215 (441)
255 cd03259 ABC_Carb_Solutes_like 37.9 19 0.00042 35.3 1.8 22 523-546 26-47 (213)
256 COG4987 CydC ABC-type transpor 37.8 21 0.00046 40.4 2.3 25 523-549 364-388 (573)
257 cd03262 ABC_HisP_GlnQ_permease 37.7 20 0.00042 35.2 1.8 22 523-546 26-47 (213)
258 TIGR00235 udk uridine kinase. 37.7 18 0.0004 35.5 1.7 15 526-540 9-23 (207)
259 PRK13947 shikimate kinase; Pro 37.7 19 0.00042 33.8 1.7 16 525-540 3-18 (171)
260 cd03266 ABC_NatA_sodium_export 37.7 19 0.00042 35.4 1.8 23 523-547 31-53 (218)
261 PRK08533 flagellar accessory p 37.5 27 0.00058 35.3 2.8 20 523-542 24-43 (230)
262 PRK04837 ATP-dependent RNA hel 37.5 58 0.0013 35.8 5.7 41 256-296 128-171 (423)
263 cd03257 ABC_NikE_OppD_transpor 37.4 20 0.00043 35.5 1.8 23 523-547 31-53 (228)
264 cd03245 ABCC_bacteriocin_expor 37.4 20 0.00043 35.4 1.8 22 523-546 30-51 (220)
265 COG1118 CysA ABC-type sulfate/ 37.4 21 0.00045 37.9 1.9 21 523-545 28-48 (345)
266 cd03222 ABC_RNaseL_inhibitor T 37.4 18 0.0004 35.0 1.5 22 523-546 25-46 (177)
267 PRK10636 putative ABC transpor 37.3 25 0.00054 41.1 2.9 23 523-547 27-49 (638)
268 PF07724 AAA_2: AAA domain (Cd 37.2 19 0.00041 34.7 1.5 20 525-546 5-24 (171)
269 cd02021 GntK Gluconate kinase 37.1 20 0.00043 33.0 1.7 15 526-540 2-16 (150)
270 PF06745 KaiC: KaiC; InterPro 37.0 31 0.00068 34.2 3.2 23 523-545 19-41 (226)
271 PRK14530 adenylate kinase; Pro 37.0 20 0.00044 35.4 1.8 16 525-540 5-20 (215)
272 cd03296 ABC_CysA_sulfate_impor 37.0 20 0.00044 36.0 1.8 23 523-547 28-50 (239)
273 PRK13342 recombination factor 36.9 20 0.00042 39.5 1.8 17 525-541 38-54 (413)
274 PRK14531 adenylate kinase; Pro 36.8 21 0.00046 34.3 1.9 16 525-540 4-19 (183)
275 PRK13540 cytochrome c biogenes 36.7 21 0.00045 34.8 1.8 22 523-546 27-48 (200)
276 cd03273 ABC_SMC2_euk Eukaryoti 36.7 27 0.00059 35.4 2.7 22 523-544 25-46 (251)
277 PLN03073 ABC transporter F fam 36.6 26 0.00056 41.7 2.8 21 524-546 204-224 (718)
278 cd03229 ABC_Class3 This class 36.4 21 0.00046 34.1 1.8 22 523-546 26-47 (178)
279 COG3598 RepA RecA-family ATPas 36.2 22 0.00048 38.0 1.9 22 524-545 90-111 (402)
280 KOG0060 Long-chain acyl-CoA tr 36.2 24 0.00052 40.4 2.4 23 523-547 461-483 (659)
281 cd03260 ABC_PstB_phosphate_tra 36.1 21 0.00046 35.4 1.8 22 523-546 26-47 (227)
282 PRK14532 adenylate kinase; Pro 36.1 21 0.00046 34.2 1.8 15 526-540 3-17 (188)
283 cd03295 ABC_OpuCA_Osmoprotecti 35.9 21 0.00047 35.8 1.8 23 523-547 27-49 (242)
284 COG1131 CcmA ABC-type multidru 35.9 25 0.00054 36.9 2.3 21 524-546 32-52 (293)
285 cd03219 ABC_Mj1267_LivG_branch 35.9 21 0.00046 35.6 1.8 22 523-546 26-47 (236)
286 PRK13539 cytochrome c biogenes 35.9 22 0.00047 34.9 1.8 22 523-546 28-49 (207)
287 PRK01184 hypothetical protein; 35.8 21 0.00046 34.1 1.7 20 526-547 4-23 (184)
288 TIGR02323 CP_lyasePhnK phospho 35.8 24 0.00053 35.7 2.2 23 523-547 29-51 (253)
289 PRK12402 replication factor C 35.7 23 0.00049 37.2 2.1 17 525-541 38-54 (337)
290 PF13481 AAA_25: AAA domain; P 35.6 29 0.00063 33.2 2.7 24 523-546 32-55 (193)
291 TIGR01184 ntrCD nitrate transp 35.6 22 0.00047 35.6 1.8 22 523-546 11-32 (230)
292 PF09439 SRPRB: Signal recogni 35.5 23 0.0005 34.6 1.8 21 524-545 4-24 (181)
293 TIGR03864 PQQ_ABC_ATP ABC tran 35.5 22 0.00048 35.6 1.8 22 523-546 27-48 (236)
294 PRK11650 ugpC glycerol-3-phosp 35.4 21 0.00046 38.5 1.8 22 523-546 30-51 (356)
295 PTZ00424 helicase 45; Provisio 35.4 73 0.0016 34.4 6.0 41 256-296 141-184 (401)
296 TIGR03265 PhnT2 putative 2-ami 35.3 21 0.00046 38.5 1.8 22 523-546 30-51 (353)
297 PRK08727 hypothetical protein; 35.2 23 0.00049 35.7 1.9 16 525-540 43-58 (233)
298 TIGR03410 urea_trans_UrtE urea 35.2 22 0.00049 35.3 1.8 22 523-546 26-47 (230)
299 PF03215 Rad17: Rad17 cell cyc 35.1 24 0.00051 40.3 2.2 24 526-551 48-71 (519)
300 cd03224 ABC_TM1139_LivF_branch 35.1 21 0.00046 35.1 1.6 22 523-546 26-47 (222)
301 CHL00131 ycf16 sulfate ABC tra 35.1 22 0.00049 35.8 1.8 22 523-546 33-54 (252)
302 cd03301 ABC_MalK_N The N-termi 35.0 23 0.00049 34.7 1.8 23 523-547 26-48 (213)
303 PRK11124 artP arginine transpo 35.0 23 0.00049 35.6 1.8 22 523-546 28-49 (242)
304 COG1135 AbcC ABC-type metal io 35.0 29 0.00063 36.8 2.6 22 523-546 32-53 (339)
305 PRK11629 lolD lipoprotein tran 35.0 23 0.00049 35.4 1.8 22 523-546 35-56 (233)
306 cd03248 ABCC_TAP TAP, the Tran 34.9 23 0.00049 35.1 1.8 22 523-546 40-61 (226)
307 TIGR01978 sufC FeS assembly AT 34.9 23 0.0005 35.4 1.9 22 523-546 26-47 (243)
308 TIGR03817 DECH_helic helicase/ 34.8 59 0.0013 38.8 5.5 65 512-609 37-104 (742)
309 cd02025 PanK Pantothenate kina 34.8 21 0.00046 35.7 1.5 14 527-540 3-16 (220)
310 cd03218 ABC_YhbG The ABC trans 34.7 23 0.0005 35.2 1.8 21 524-546 27-47 (232)
311 PRK14250 phosphate ABC transpo 34.7 23 0.0005 35.6 1.8 22 523-546 29-50 (241)
312 PRK10908 cell division protein 34.7 23 0.0005 35.0 1.8 22 523-546 28-49 (222)
313 cd03264 ABC_drug_resistance_li 34.6 22 0.00048 34.8 1.7 20 525-546 27-46 (211)
314 PHA02558 uvsW UvsW helicase; P 34.6 22 0.00047 40.3 1.7 39 260-298 200-238 (501)
315 PRK14267 phosphate ABC transpo 34.4 23 0.0005 35.8 1.8 23 523-547 30-52 (253)
316 PRK14271 phosphate ABC transpo 34.4 26 0.00056 36.3 2.2 22 523-546 47-68 (276)
317 PF00485 PRK: Phosphoribulokin 34.4 22 0.00048 34.5 1.6 14 527-540 3-16 (194)
318 PRK11701 phnK phosphonate C-P 34.3 26 0.00057 35.6 2.2 23 523-547 32-54 (258)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 34.3 25 0.00054 32.6 1.8 22 523-546 26-47 (144)
320 PRK14247 phosphate ABC transpo 34.2 24 0.00051 35.7 1.8 23 523-547 29-51 (250)
321 PLN03025 replication factor C 34.2 25 0.00054 37.2 2.1 16 526-541 37-52 (319)
322 PF06733 DEAD_2: DEAD_2; Inte 34.2 23 0.0005 33.8 1.6 44 254-297 112-160 (174)
323 cd03247 ABCC_cytochrome_bd The 34.1 25 0.00054 33.6 1.8 23 523-547 28-50 (178)
324 cd03216 ABC_Carb_Monos_I This 33.9 25 0.00054 33.2 1.8 22 523-546 26-47 (163)
325 PF02399 Herpes_ori_bp: Origin 33.8 25 0.00055 41.8 2.2 42 255-296 113-156 (824)
326 cd03270 ABC_UvrA_I The excisio 33.8 24 0.00052 35.3 1.8 17 524-540 22-38 (226)
327 cd03274 ABC_SMC4_euk Eukaryoti 33.8 24 0.00052 35.1 1.8 17 526-542 28-44 (212)
328 PF03205 MobB: Molybdopterin g 33.8 24 0.00051 32.8 1.6 15 526-540 3-17 (140)
329 PRK13645 cbiO cobalt transport 33.8 24 0.00052 36.7 1.8 23 523-547 37-59 (289)
330 TIGR03689 pup_AAA proteasome A 33.7 24 0.00051 40.2 1.9 17 523-539 216-232 (512)
331 cd03237 ABC_RNaseL_inhibitor_d 33.7 24 0.00053 35.9 1.8 23 523-547 25-47 (246)
332 PRK08116 hypothetical protein; 33.7 58 0.0013 33.7 4.6 14 525-538 116-129 (268)
333 cd03265 ABC_DrrA DrrA is the A 33.6 25 0.00053 34.8 1.8 22 523-546 26-47 (220)
334 PRK13538 cytochrome c biogenes 33.6 25 0.00053 34.4 1.8 23 523-547 27-49 (204)
335 PRK13643 cbiO cobalt transport 33.6 30 0.00066 36.0 2.5 22 523-546 32-53 (288)
336 cd03268 ABC_BcrA_bacitracin_re 33.6 25 0.00054 34.4 1.8 22 523-546 26-47 (208)
337 PRK00889 adenylylsulfate kinas 33.5 24 0.00051 33.5 1.6 16 525-540 6-21 (175)
338 PRK13851 type IV secretion sys 33.5 24 0.00052 38.0 1.8 18 523-540 162-179 (344)
339 PRK14712 conjugal transfer nic 33.5 27 0.00059 44.9 2.5 39 283-322 369-409 (1623)
340 PRK11432 fbpC ferric transport 33.5 24 0.00052 38.1 1.8 22 523-546 32-53 (351)
341 cd01123 Rad51_DMC1_radA Rad51_ 33.4 27 0.00059 34.7 2.1 21 524-544 20-40 (235)
342 PRK05703 flhF flagellar biosyn 33.4 26 0.00055 38.9 2.0 19 523-541 221-239 (424)
343 PRK10895 lipopolysaccharide AB 33.3 25 0.00054 35.3 1.8 23 523-547 29-51 (241)
344 cd03272 ABC_SMC3_euk Eukaryoti 33.3 27 0.00058 35.0 2.0 19 524-542 24-42 (243)
345 cd03278 ABC_SMC_barmotin Barmo 33.3 34 0.00073 33.6 2.7 16 525-540 24-39 (197)
346 PRK11248 tauB taurine transpor 33.3 25 0.00054 35.9 1.8 22 523-546 27-48 (255)
347 PRK14242 phosphate transporter 33.2 28 0.00061 35.2 2.2 22 523-546 32-53 (253)
348 PRK10584 putative ABC transpor 33.2 25 0.00055 34.9 1.8 22 523-546 36-57 (228)
349 PRK10771 thiQ thiamine transpo 33.1 25 0.00055 35.1 1.8 22 523-546 25-46 (232)
350 PRK10575 iron-hydroxamate tran 33.1 25 0.00055 36.0 1.8 22 523-546 37-58 (265)
351 PRK13543 cytochrome c biogenes 33.1 25 0.00055 34.7 1.8 22 523-546 37-58 (214)
352 TIGR03005 ectoine_ehuA ectoine 33.1 25 0.00055 35.5 1.8 23 523-547 26-48 (252)
353 cd03215 ABC_Carb_Monos_II This 33.0 26 0.00056 33.6 1.8 23 523-547 26-48 (182)
354 PRK09493 glnQ glutamine ABC tr 33.0 25 0.00055 35.2 1.8 22 523-546 27-48 (240)
355 PRK10247 putative ABC transpor 33.0 26 0.00056 34.9 1.8 22 523-546 33-54 (225)
356 TIGR02528 EutP ethanolamine ut 32.9 26 0.00055 31.6 1.7 21 526-547 3-23 (142)
357 PRK13548 hmuV hemin importer A 32.9 26 0.00055 35.8 1.8 22 523-546 28-49 (258)
358 smart00488 DEXDc2 DEAD-like he 32.9 22 0.00048 37.2 1.4 41 506-546 3-50 (289)
359 smart00489 DEXDc3 DEAD-like he 32.9 22 0.00048 37.2 1.4 41 506-546 3-50 (289)
360 cd04159 Arl10_like Arl10-like 32.9 26 0.00057 31.4 1.7 14 526-539 2-15 (159)
361 TIGR03797 NHPM_micro_ABC2 NHPM 32.8 27 0.00059 41.0 2.3 23 523-547 479-501 (686)
362 cd04138 H_N_K_Ras_like H-Ras/N 32.8 25 0.00055 31.9 1.6 19 526-545 4-22 (162)
363 COG1223 Predicted ATPase (AAA+ 32.8 26 0.00056 36.4 1.8 56 464-547 118-173 (368)
364 CHL00195 ycf46 Ycf46; Provisio 32.7 33 0.00071 38.9 2.8 26 522-549 258-283 (489)
365 PRK12377 putative replication 32.7 26 0.00057 35.9 1.9 17 524-540 102-118 (248)
366 PRK12723 flagellar biosynthesi 32.7 24 0.00053 38.7 1.7 16 525-540 176-191 (388)
367 PRK14255 phosphate ABC transpo 32.6 26 0.00056 35.4 1.8 22 523-546 31-52 (252)
368 PRK09361 radB DNA repair and r 32.6 34 0.00074 33.9 2.6 23 523-545 23-45 (225)
369 KOG0086 GTPase Rab4, small G p 32.5 39 0.00085 32.2 2.7 23 526-549 12-34 (214)
370 PF01926 MMR_HSR1: 50S ribosom 32.5 26 0.00056 30.6 1.6 13 526-538 2-14 (116)
371 PRK10619 histidine/lysine/argi 32.5 26 0.00057 35.6 1.8 23 523-547 31-53 (257)
372 KOG1803 DNA helicase [Replicat 32.4 14 0.00031 42.2 -0.1 36 508-543 182-221 (649)
373 PRK15093 antimicrobial peptide 32.4 27 0.00058 37.2 1.9 22 523-546 33-54 (330)
374 KOG0952 DNA/RNA helicase MER3/ 32.3 97 0.0021 38.0 6.5 59 524-607 127-185 (1230)
375 PRK13648 cbiO cobalt transport 32.3 26 0.00057 35.9 1.8 23 523-547 35-57 (269)
376 PRK11144 modC molybdate transp 32.3 26 0.00056 37.7 1.8 22 523-546 24-45 (352)
377 PRK10418 nikD nickel transport 32.3 26 0.00057 35.5 1.8 22 523-546 29-50 (254)
378 cd01393 recA_like RecA is a b 32.3 30 0.00066 34.1 2.2 22 523-544 19-40 (226)
379 smart00175 RAB Rab subfamily o 32.2 26 0.00057 32.0 1.7 19 526-545 3-21 (164)
380 cd03250 ABCC_MRP_domain1 Domai 32.2 28 0.0006 34.0 1.9 22 523-546 31-52 (204)
381 KOG0058 Peptide exporter, ABC 32.2 31 0.00066 40.5 2.4 26 508-541 487-512 (716)
382 PRK11545 gntK gluconate kinase 32.2 18 0.0004 34.3 0.6 13 529-541 1-13 (163)
383 PRK14248 phosphate ABC transpo 32.1 27 0.00058 35.8 1.8 22 523-546 47-68 (268)
384 cd03254 ABCC_Glucan_exporter_l 32.0 27 0.00059 34.6 1.8 23 523-547 29-51 (229)
385 cd00984 DnaB_C DnaB helicase C 32.0 35 0.00077 34.0 2.7 23 523-545 13-35 (242)
386 TIGR02769 nickel_nikE nickel i 32.0 27 0.00058 35.8 1.8 22 523-546 37-58 (265)
387 cd03228 ABCC_MRP_Like The MRP 32.0 28 0.00061 33.0 1.8 23 523-547 28-50 (171)
388 PRK13549 xylose transporter AT 31.9 32 0.00069 38.8 2.6 22 523-546 31-52 (506)
389 TIGR02770 nickel_nikD nickel i 31.9 27 0.00059 34.8 1.8 23 523-547 12-34 (230)
390 PRK15056 manganese/iron transp 31.9 27 0.00058 35.9 1.8 22 523-546 33-54 (272)
391 KOG0346 RNA helicase [RNA proc 31.8 99 0.0021 34.4 6.0 61 523-609 56-116 (569)
392 TIGR00972 3a0107s01c2 phosphat 31.8 27 0.00059 35.2 1.8 22 523-546 27-48 (247)
393 cd04155 Arl3 Arl3 subfamily. 31.8 28 0.0006 32.4 1.7 14 526-539 17-30 (173)
394 TIGR00554 panK_bact pantothena 31.8 34 0.00073 36.0 2.5 15 526-540 65-79 (290)
395 KOG3354 Gluconate kinase [Carb 31.8 28 0.0006 33.4 1.7 25 522-548 11-35 (191)
396 TIGR00376 DNA helicase, putati 31.7 28 0.0006 40.8 2.0 21 524-544 174-194 (637)
397 cd01876 YihA_EngB The YihA (En 31.7 27 0.00058 31.7 1.6 13 526-538 2-14 (170)
398 PRK05342 clpX ATP-dependent pr 31.7 27 0.00059 38.6 1.9 20 521-540 106-125 (412)
399 KOG0332 ATP-dependent RNA heli 31.7 21 0.00045 38.7 0.9 33 508-547 121-153 (477)
400 PRK02496 adk adenylate kinase; 31.7 28 0.0006 33.4 1.7 15 526-540 4-18 (184)
401 TIGR03877 thermo_KaiC_1 KaiC d 31.6 37 0.00079 34.2 2.7 22 523-544 21-42 (237)
402 PRK14273 phosphate ABC transpo 31.6 30 0.00064 35.1 2.0 22 523-546 33-54 (254)
403 PRK14251 phosphate ABC transpo 31.6 28 0.0006 35.2 1.8 23 523-547 30-52 (251)
404 PRK14245 phosphate ABC transpo 31.6 31 0.00068 34.8 2.2 22 523-546 29-50 (250)
405 PRK13547 hmuV hemin importer A 31.5 29 0.00064 35.8 2.0 22 523-546 27-48 (272)
406 cd03279 ABC_sbcCD SbcCD and ot 31.4 29 0.00062 34.3 1.9 18 525-542 30-47 (213)
407 PRK14261 phosphate ABC transpo 31.4 28 0.0006 35.3 1.8 22 523-546 32-53 (253)
408 PRK09452 potA putrescine/sperm 31.4 27 0.00058 38.1 1.8 22 523-546 40-61 (375)
409 cd00267 ABC_ATPase ABC (ATP-bi 31.4 29 0.00064 32.2 1.8 21 524-546 26-46 (157)
410 TIGR01970 DEAH_box_HrpB ATP-de 31.3 83 0.0018 38.0 6.0 24 524-547 18-41 (819)
411 PRK11607 potG putrescine trans 31.3 27 0.00059 38.1 1.8 22 523-546 45-66 (377)
412 PRK14260 phosphate ABC transpo 31.3 28 0.00061 35.5 1.8 23 523-547 33-55 (259)
413 PRK10744 pstB phosphate transp 31.3 28 0.00061 35.5 1.8 22 523-546 39-60 (260)
414 cd03231 ABC_CcmA_heme_exporter 31.2 29 0.00063 33.9 1.8 22 523-546 26-47 (201)
415 PRK11247 ssuB aliphatic sulfon 31.2 28 0.00062 35.6 1.8 22 523-546 38-59 (257)
416 PRK14241 phosphate transporter 31.1 28 0.00061 35.4 1.8 22 523-546 30-51 (258)
417 PRK14239 phosphate transporter 31.1 28 0.00062 35.1 1.8 22 523-546 31-52 (252)
418 cd02020 CMPK Cytidine monophos 31.1 29 0.00064 31.3 1.7 15 526-540 2-16 (147)
419 PRK05642 DNA replication initi 31.0 26 0.00056 35.4 1.5 15 525-539 47-61 (234)
420 cd02028 UMPK_like Uridine mono 31.0 28 0.00061 33.6 1.6 15 526-540 2-16 (179)
421 cd00268 DEADc DEAD-box helicas 31.0 45 0.00097 32.1 3.1 41 257-297 115-158 (203)
422 cd03249 ABC_MTABC3_MDL1_MDL2 M 30.9 29 0.00062 34.7 1.8 22 523-546 29-50 (238)
423 cd04119 RJL RJL (RabJ-Like) su 30.9 29 0.00062 31.7 1.7 20 526-546 3-22 (168)
424 PRK13541 cytochrome c biogenes 30.8 29 0.00064 33.6 1.8 23 523-547 26-48 (195)
425 PRK06921 hypothetical protein; 30.8 29 0.00062 35.9 1.8 17 524-540 118-134 (266)
426 PRK09984 phosphonate/organopho 30.8 29 0.00062 35.4 1.8 23 523-547 30-52 (262)
427 PRK13632 cbiO cobalt transport 30.8 29 0.00062 35.7 1.8 23 523-547 35-57 (271)
428 PRK08356 hypothetical protein; 30.8 28 0.00061 33.8 1.7 15 526-540 8-22 (195)
429 PRK15112 antimicrobial peptide 30.8 29 0.00062 35.6 1.8 23 523-547 39-61 (267)
430 PRK10851 sulfate/thiosulfate t 30.7 29 0.00062 37.5 1.8 23 523-547 28-50 (353)
431 PRK11831 putative ABC transpor 30.7 29 0.00063 35.6 1.8 22 523-546 33-54 (269)
432 TIGR02982 heterocyst_DevA ABC 30.6 30 0.00065 34.2 1.8 22 523-546 31-52 (220)
433 PRK10253 iron-enterobactin tra 30.6 29 0.00063 35.5 1.8 22 523-546 33-54 (265)
434 COG1111 MPH1 ERCC4-like helica 30.6 28 0.00061 39.1 1.7 48 253-300 99-149 (542)
435 PF00437 T2SE: Type II/IV secr 30.6 25 0.00055 36.0 1.3 19 523-541 127-145 (270)
436 PRK09473 oppD oligopeptide tra 30.5 26 0.00057 37.3 1.5 22 523-546 42-63 (330)
437 PRK14262 phosphate ABC transpo 30.5 30 0.00065 34.9 1.8 22 523-546 29-50 (250)
438 PRK13638 cbiO cobalt transport 30.5 29 0.00064 35.6 1.8 22 523-546 27-48 (271)
439 PRK03695 vitamin B12-transport 30.5 30 0.00064 35.1 1.8 22 523-546 22-43 (248)
440 COG4608 AppF ABC-type oligopep 30.5 31 0.00066 35.9 1.9 18 523-540 39-56 (268)
441 cd04175 Rap1 Rap1 subgroup. T 30.4 38 0.00082 31.2 2.4 20 526-546 4-23 (164)
442 COG4618 ArpD ABC-type protease 30.4 31 0.00068 39.0 2.0 21 523-545 362-382 (580)
443 TIGR03411 urea_trans_UrtD urea 30.4 30 0.00064 34.7 1.8 22 523-546 28-49 (242)
444 PRK09544 znuC high-affinity zi 30.3 30 0.00065 35.3 1.8 22 523-546 30-51 (251)
445 TIGR02868 CydC thiol reductant 30.3 29 0.00062 39.3 1.8 23 523-547 361-383 (529)
446 PF00308 Bac_DnaA: Bacterial d 30.2 25 0.00054 35.2 1.2 14 525-538 36-49 (219)
447 KOG0331 ATP-dependent RNA heli 30.2 1.2E+02 0.0027 34.5 6.7 77 506-608 111-187 (519)
448 cd03233 ABC_PDR_domain1 The pl 30.2 30 0.00064 33.9 1.7 22 523-546 33-54 (202)
449 smart00173 RAS Ras subfamily o 30.2 30 0.00065 31.8 1.7 14 526-539 3-16 (164)
450 PRK14962 DNA polymerase III su 30.2 28 0.00061 39.2 1.7 19 523-541 36-54 (472)
451 cd03223 ABCD_peroxisomal_ALDP 30.2 31 0.00068 32.6 1.8 22 523-546 27-48 (166)
452 TIGR02782 TrbB_P P-type conjug 30.2 31 0.00067 36.4 1.9 18 523-540 132-149 (299)
453 PRK09270 nucleoside triphospha 30.2 29 0.00063 34.7 1.7 21 526-546 36-58 (229)
454 PRK04195 replication factor C 30.1 29 0.00063 39.0 1.8 18 523-540 39-56 (482)
455 PRK11231 fecE iron-dicitrate t 30.1 30 0.00066 35.1 1.8 23 523-547 28-50 (255)
456 cd03230 ABC_DR_subfamily_A Thi 30.1 31 0.00068 32.8 1.8 23 523-547 26-48 (173)
457 COG1137 YhbG ABC-type (unclass 30.1 13 0.00029 37.1 -0.7 20 523-542 30-49 (243)
458 cd00876 Ras Ras family. The R 30.1 30 0.00065 31.3 1.6 19 526-545 2-20 (160)
459 PRK00254 ski2-like helicase; P 30.0 85 0.0018 37.3 5.8 52 523-608 39-90 (720)
460 PRK13948 shikimate kinase; Pro 30.0 32 0.00069 33.6 1.8 18 523-540 10-27 (182)
461 cd03240 ABC_Rad50 The catalyti 30.0 42 0.0009 33.1 2.7 17 525-541 24-40 (204)
462 PRK13949 shikimate kinase; Pro 30.0 31 0.00068 32.9 1.8 17 525-541 3-19 (169)
463 cd03244 ABCC_MRP_domain2 Domai 30.0 31 0.00067 34.0 1.8 23 523-547 30-52 (221)
464 PRK14238 phosphate transporter 30.0 30 0.00066 35.6 1.8 22 523-546 50-71 (271)
465 PRK11000 maltose/maltodextrin 30.0 29 0.00064 37.6 1.8 22 523-546 29-50 (369)
466 PRK13635 cbiO cobalt transport 29.9 30 0.00065 35.8 1.8 22 523-546 33-54 (279)
467 PRK11308 dppF dipeptide transp 29.9 30 0.00065 36.9 1.8 21 523-545 41-61 (327)
468 cd03252 ABCC_Hemolysin The ABC 29.9 31 0.00067 34.5 1.8 22 523-546 28-49 (237)
469 PRK14527 adenylate kinase; Pro 29.8 32 0.0007 33.2 1.9 15 526-540 9-23 (191)
470 TIGR01189 ccmA heme ABC export 29.8 31 0.00067 33.5 1.8 23 523-547 26-48 (198)
471 PRK13650 cbiO cobalt transport 29.8 35 0.00075 35.3 2.2 23 523-547 33-55 (279)
472 cd03246 ABCC_Protease_Secretio 29.8 32 0.0007 32.7 1.8 23 523-547 28-50 (173)
473 PF01078 Mg_chelatase: Magnesi 29.7 31 0.00068 34.4 1.8 16 523-538 22-37 (206)
474 PF14532 Sigma54_activ_2: Sigm 29.7 34 0.00073 31.2 1.9 17 523-539 21-37 (138)
475 PRK15079 oligopeptide ABC tran 29.7 30 0.00066 36.9 1.8 21 523-545 47-67 (331)
476 PRK14265 phosphate ABC transpo 29.7 31 0.00067 35.6 1.8 22 523-546 46-67 (274)
477 TIGR02012 tigrfam_recA protein 29.7 31 0.00067 36.8 1.8 22 524-545 56-77 (321)
478 cd02027 APSK Adenosine 5'-phos 29.7 31 0.00067 32.1 1.7 13 526-538 2-14 (149)
479 PRK13649 cbiO cobalt transport 29.7 31 0.00067 35.6 1.8 22 523-546 33-54 (280)
480 PRK13634 cbiO cobalt transport 29.6 33 0.00071 35.8 2.0 23 523-547 33-55 (290)
481 cd04164 trmE TrmE (MnmE, ThdF, 29.6 33 0.00071 30.9 1.8 21 525-546 3-23 (157)
482 PRK13531 regulatory ATPase Rav 29.5 29 0.00064 39.1 1.7 18 523-540 39-56 (498)
483 KOG0345 ATP-dependent RNA heli 29.5 83 0.0018 35.3 5.0 66 512-604 29-97 (567)
484 COG3451 VirB4 Type IV secretor 29.5 46 0.001 40.0 3.4 43 496-545 416-458 (796)
485 PRK14269 phosphate ABC transpo 29.5 32 0.00069 34.7 1.8 23 523-547 28-50 (246)
486 PTZ00132 GTP-binding nuclear p 29.4 31 0.00066 33.9 1.7 15 526-540 12-26 (215)
487 cd01892 Miro2 Miro2 subfamily. 29.4 38 0.00083 31.8 2.3 20 526-546 7-26 (169)
488 PRK13646 cbiO cobalt transport 29.4 31 0.00068 35.8 1.8 22 523-546 33-54 (286)
489 COG0194 Gmk Guanylate kinase [ 29.4 32 0.00069 33.9 1.7 14 526-539 7-20 (191)
490 PRK11264 putative amino-acid A 29.4 32 0.00069 34.7 1.8 22 523-546 29-50 (250)
491 TIGR02903 spore_lon_C ATP-depe 29.3 30 0.00066 40.3 1.9 18 523-540 175-192 (615)
492 TIGR01351 adk adenylate kinase 29.3 32 0.00069 33.9 1.8 16 526-541 2-17 (210)
493 PRK14249 phosphate ABC transpo 29.3 32 0.00069 34.8 1.8 22 523-546 30-51 (251)
494 TIGR02204 MsbA_rel ABC transpo 29.2 35 0.00075 39.1 2.3 23 523-547 366-388 (576)
495 TIGR01288 nodI ATP-binding ABC 29.2 32 0.00068 36.1 1.8 22 523-546 30-51 (303)
496 PRK03846 adenylylsulfate kinas 29.2 30 0.00066 33.7 1.6 20 525-546 26-45 (198)
497 TIGR01277 thiQ thiamine ABC tr 29.2 37 0.00081 33.3 2.2 23 523-547 24-46 (213)
498 cd03217 ABC_FeS_Assembly ABC-t 29.1 33 0.00071 33.5 1.8 23 523-547 26-48 (200)
499 PRK04914 ATP-dependent helicas 29.1 58 0.0013 40.0 4.2 64 260-323 246-321 (956)
500 PRK09087 hypothetical protein; 29.1 31 0.00068 34.7 1.7 19 526-546 47-65 (226)
No 1
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-46 Score=403.24 Aligned_cols=278 Identities=23% Similarity=0.256 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccccchhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhc
Q 038017 224 ESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPL 303 (610)
Q Consensus 224 ~~r~~~~~~l~~l~~~l~~l~l~~~~~~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL 303 (610)
..|++....++.|++++++.+ +.....++.+++|||||..+|.. ..+....||+||||||||+.||++|+|+
T Consensus 308 ~~~~~~~~~i~~lrkdl~kre-------~~~v~eii~n~~VVfaTl~ga~~-~~~~~~~fD~vIIDEaaQamE~~cWipv 379 (649)
T KOG1803|consen 308 KLRKGIRKEIKLLRKDLRKRE-------RKTVKEIISNSRVVFATLGGALD-RLLRKRTFDLVIIDEAAQAMEPQCWIPV 379 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcccceEEEeccchhh-hhhcccCCCEEEEehhhhhccchhhhHH
Confidence 456677778888888877653 45567899999999999988776 2334467999999999999999999999
Q ss_pred cCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC--CCccccccccCCchhhhhcchhhhcCCCCccCccc
Q 038017 304 QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG--HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTV 381 (610)
Q Consensus 304 ~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g--~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v 381 (610)
. ..+++||+|||+||||++.+..+...|++.|+|||+.... ...++|++|||||..|+.|+|..||+|+|++++++
T Consensus 380 l--k~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~~Im~wsn~~fY~~qlka~~~v 457 (649)
T KOG1803|consen 380 L--KGKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNEKIMNWSNEVFYNGQLKAASSV 457 (649)
T ss_pred h--cCCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcchHHHhhCcHhhhcCCeeeecchh
Confidence 8 4689999999999999999999999999999999999874 67899999999999999999999999999999999
Q ss_pred cccccccccCC---CCCCCCeEEEEeCCCe--ee----ecCCccCCHHHHHHHHHHHHH--------ccccCCCcccccc
Q 038017 382 RKRSYEKQFLP---GPMYGPYAFINVFGGR--EE----FIEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTS 444 (610)
Q Consensus 382 ~~~~~~~~~~~---~~~~~p~~fidv~~g~--e~----~~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv 444 (610)
.++.+...+.. .+.+.|+.|+|+.... |. ....|++|.+||++|..+++. ..|+|++||++|+
T Consensus 458 ~~~lL~dl~~v~~t~~t~~PlvlvDT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~L~~~gV~p~dIaVIsPY~aQv 537 (649)
T KOG1803|consen 458 ASHLLRDLPNVLATESTKSPLVLVDTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKRLLEAGVQPSDIAVISPYNAQV 537 (649)
T ss_pred hhhhhhcccCCCCccccCCcEEEEecccchhhhhccchhhccccCCHHHHHHHHHHHHHHHHcCCChhHeEEeccchHHH
Confidence 98876543332 2346799999994322 11 123599999999999999987 4699999999999
Q ss_pred cEEEeeccccccCCCCCcccccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcC
Q 038017 445 NIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFP 523 (610)
Q Consensus 445 ~iI~~~~~~~~~~~~~~~v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~ 523 (610)
.++|. .......+.++.|||+|||+| ++.+++..+|+++.+-+|++-+.++ +||++||+++++++.|
T Consensus 538 ~llR~---~~~~~~~~veV~TVD~fQGrE----kdvVIfsmVRSN~k~evGFL~e~RR-----LNVAiTRaRRh~~vIg 604 (649)
T KOG1803|consen 538 SLLRE---EDEEDFRDVEVGTVDGFQGRE----KDVVIFSLVRSNDKGEVGFLGETRR-----LNVAITRARRHFVVIG 604 (649)
T ss_pred HHHhh---cccccCccceeecccccccce----eeEEEEEEEeecCcccccccCCcce-----eeEEEEeccceEEEEc
Confidence 99992 111223457889999999999 7777888899999999999955543 9999999999976653
No 2
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=1.5e-45 Score=396.56 Aligned_cols=282 Identities=26% Similarity=0.291 Sum_probs=233.9
Q ss_pred HHHHHHHHHHhhhcCCcccc----chhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccC
Q 038017 230 HSVLRELWNSFKELNLPSAM----NMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQL 305 (610)
Q Consensus 230 ~~~l~~l~~~l~~l~l~~~~----~~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~ 305 (610)
++.+..++++-.+++..+.. .++...+.++++|+||+|||.+|+.. .+....|..|+||||.|++||++||||.+
T Consensus 513 Lq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~-rl~~~kfr~VLiDEaTQatEpe~LiPlvl 591 (935)
T KOG1802|consen 513 LQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDR-RLSKFKFRTVLIDEATQATEPECLIPLVL 591 (935)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccccch-hhccccccEEEEecccccCCcchhhhhhh
Confidence 56677777776666654443 36677899999999999999999874 34557899999999999999999999998
Q ss_pred cCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCchhhhhcchhhhcCCCCccCccccccc
Q 038017 306 PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRS 385 (610)
Q Consensus 306 ~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~ 385 (610)
++|++||||||+||.|++..+.+..++|.+||||||+..|...++|.+||||||.|++|||..||+|.|.+|-....+.
T Consensus 592 -G~kq~VlVGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP~lSefpsn~fY~G~LqnGVT~~~R~ 670 (935)
T KOG1802|consen 592 -GAKQLVLVGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHPALSEFPSNMFYEGELQNGVTEIERS 670 (935)
T ss_pred -cceeEEEeccccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeChhhhhcchhhhccchhhcCcchhhhc
Confidence 8999999999999999999988999999999999999999999999999999999999999999999999998776665
Q ss_pred cccccCCCCC-CCCeEEEEeCCCeeee--cCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeec-cc
Q 038017 386 YEKQFLPGPM-YGPYAFINVFGGREEF--IEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKN-LA 453 (610)
Q Consensus 386 ~~~~~~~~~~-~~p~~fidv~~g~e~~--~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~-~~ 453 (610)
....+++-|. ..|+.|... .|.|+. .|+|+.|..||..+.++++. ..|+|+|||.+|...|.-|- ..
T Consensus 671 ~~g~~~pwp~p~~pl~fy~~-~g~eeisasGtSf~Nr~Ea~~~ekii~~l~~~gv~~~qIGVITpYegQr~~i~~ym~~~ 749 (935)
T KOG1802|consen 671 PLGVDFPWPQPDKPLFFYVC-YGQEEISASGTSFLNRTEAANCEKIITKLLKSGVKPSQIGVITPYEGQRSYIVNYMQTN 749 (935)
T ss_pred cCCCCCCCCCCCCccceEEe-ccceeeeccccceecHHHHHHHHHHHHHHHHcCCCHHHeeeecccchhHHHHHHHHHhc
Confidence 4433333221 358888888 888876 89999999999999999997 46888888888888776431 11
Q ss_pred ---cccCCCCCcccccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcC
Q 038017 454 ---DNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFP 523 (610)
Q Consensus 454 ---~~~~~~~~~v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~ 523 (610)
.+.....+++++||+|||+| ++-++++.++++...-++++ .|.+ ++||++||+++-+|++|
T Consensus 750 gsl~~~ly~~veVasVDaFQGrE----KdfIIlSCVRsn~~qgIGFl-~d~R----RlNVaLTRaK~glvivG 813 (935)
T KOG1802|consen 750 GSLHKDLYKEVEVASVDAFQGRE----KDFIILSCVRSNEHQGIGFL-NDPR----RLNVALTRAKYGLVIVG 813 (935)
T ss_pred CccccchhheeEEEeeccccCcc----cceEEEEEeecccccccccc-cCch----hhhhhhhhcccceEEec
Confidence 12344566899999999999 77788888999887677777 4444 39999999999887774
No 3
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=1.2e-39 Score=370.57 Aligned_cols=257 Identities=25% Similarity=0.272 Sum_probs=198.7
Q ss_pred hhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccccccc
Q 038017 251 MGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSG 330 (610)
Q Consensus 251 ~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~ 330 (610)
...+...++.+|+|+++|+++. .+....||+||||||||++||++|+||. +++++||||||+||||++.+..
T Consensus 334 ~~~~~~~il~~a~v~~st~~~~----~l~~~~Fd~vIIDEAsQ~~ep~~lipl~--~~~~~vLvGD~~QLpP~v~s~~-- 405 (637)
T TIGR00376 334 EERIENEILAESDVVQSTNSSA----GLKGWEFDVAVIDEASQAMEPSCLIPLL--KARKLILAGDHKQLPPTILSHD-- 405 (637)
T ss_pred HHHHHHHHHhhCCEEEeccCcH----hhccCCCCEEEEECccccchHHHHHHHh--hCCeEEEecChhhcCCcccccc--
Confidence 3457788999999998886542 2455789999999999999999999998 4589999999999999998754
Q ss_pred ccccccCHHHHHHhcC-CCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCC--------CCCCCeEE
Q 038017 331 EAYFGRSLFERLSYLG-HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPG--------PMYGPYAF 401 (610)
Q Consensus 331 ~~~l~~SLFeRL~~~g-~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~--------~~~~p~~f 401 (610)
..+++.|||+||.... ...++|++||||||+|++|+|..||+|+|.+++++..+.....+... ....|+.|
T Consensus 406 ~~~l~~SlferL~~~~~~~~~~L~~QYRMh~~I~~f~s~~fY~g~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~f 485 (637)
T TIGR00376 406 AEELELTLFERLIKEYPERSRTLNVQYRMNQKIMEFPSREFYNGKLTAHESVANILLRDLPKVEATDSEDDLETEIPLLF 485 (637)
T ss_pred ccccchhHHHHHHHhCCCceeecchhcCCCHHHHhhhHHhhcCCccccCcchhhhhhhhcccccccccccccCCCCCEEE
Confidence 4578999999999864 45789999999999999999999999999999877655322111000 11248999
Q ss_pred EEeCCCeee-----ecCCccCCHHHHHHHHHHHHHc--------cccCCCcccccccEEEeeccccccCCCCCccccccc
Q 038017 402 INVFGGREE-----FIEHSCRNMVEVSVVMKILLNL--------NLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDC 468 (610)
Q Consensus 402 idv~~g~e~-----~~~~S~~N~~EA~~V~~lv~~~--------~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~ 468 (610)
+|+ .|.+. ..+.|+.|..||+.|+++++.+ .|+|++||++|+..|+-. +.. ....+.+.|||+
T Consensus 486 idt-~g~~~~e~~~~~~~S~~N~~EA~~V~~~v~~l~~~g~~~~~IgVItPY~aQv~~L~~~-l~~--~~~~i~v~TVd~ 561 (637)
T TIGR00376 486 IDT-SGCELFELKEADSTSKYNPGEAELVSEIIQALVKMGVPANDIGVITPYDAQVDLLRQL-LEH--RHIDIEVSSVDG 561 (637)
T ss_pred EEC-CCccccccccCCCCCcCCHHHHHHHHHHHHHHHhcCCCcceEEEEcccHHHHHHHHHH-HHh--hCCCeEEccccc
Confidence 999 44332 2578999999999999999873 678889999888887632 211 123567899999
Q ss_pred ccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceEE
Q 038017 469 RSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFI 528 (610)
Q Consensus 469 ~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~v 528 (610)
|||+| .+.++++.++++..+-.+++ .+.+ ++||++|||++.+|++|+...+
T Consensus 562 fQG~E----~DvIi~S~vrsn~~~~~gFl-~d~r----RLNVAlTRAK~~LiIvGn~~~l 612 (637)
T TIGR00376 562 FQGRE----KEVIIISFVRSNRKGEVGFL-KDLR----RLNVALTRARRKLIVIGDSRTL 612 (637)
T ss_pred cCCcc----ccEEEEEEEecCCCCCcccc-cCcc----eeeeehhhhhCceEEEECHHHh
Confidence 99999 55556666666665555655 4544 3999999999998888654443
No 4
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=386.04 Aligned_cols=280 Identities=32% Similarity=0.388 Sum_probs=229.7
Q ss_pred CccccchhHHHHHHhc----CCeEEEEcccccch-hcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCc
Q 038017 245 LPSAMNMGLLKDFCFT----KASLIFCTASSSYK-LHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQ 319 (610)
Q Consensus 245 l~~~~~~~~i~~~il~----~a~VI~~T~sss~~-l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~Q 319 (610)
++.......++..++. .|.+|+||+++++. +......+||.||||||+|+.||.+++||++.+.+|++|+||+.|
T Consensus 494 i~~~~~~~~~~~~~~~~~~~~a~~i~~t~~~~~~~~~~~~~~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~~q 573 (827)
T KOG1801|consen 494 IPSQLERPEVRILDLGQGREEAALIVPTTRGSRIVLTLYGGPPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDLAQ 573 (827)
T ss_pred hhhhccchhhhcchhhhccccceeEeecccccceEeecccCCCceEEEEehhhhhcCccchhhhhhcCCceEEEeccccc
Confidence 3444555666777888 99999999998876 444456789999999999999999999999988899999999999
Q ss_pred CCcccccccccccccccCHHHHHHhcCCCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCe
Q 038017 320 LPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPY 399 (610)
Q Consensus 320 LpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~ 399 (610)
|||+|.+..+..+.+.+|+|+|+...+.+.++|++||||||+|+.|||..||+++|++++++....+...|..+++++||
T Consensus 574 lP~~V~s~~~~~~k~~~slf~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~~~~~~~y 653 (827)
T KOG1801|consen 574 LPATVHSSPAGCFKYMTSLFERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGGRLKDVNNVSESNTVKLWHSGETFGPY 653 (827)
T ss_pred CChhhccchhccccchhhHHHHHHHccCccceecceeecCCccccCccccccccccccCcccchhhccccCcCCCccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred EEEEeCCCeeee-cCCccCCHHHHHHHHHHHHH------------ccccCCCcccccccEEEe--eccccc--cCCCCCc
Q 038017 400 AFINVFGGREEF-IEHSCRNMVEVSVVMKILLN------------LNLEVPKTWAVTSNIVRF--KNLADN--ESGSDLS 462 (610)
Q Consensus 400 ~fidv~~g~e~~-~~~S~~N~~EA~~V~~lv~~------------~~i~v~tpy~~qv~iI~~--~~~~~~--~~~~~~~ 462 (610)
.|+|+..|+|.. .+.|..|..|++++..++.. ..+|+++||..|+..++- -..... ....++.
T Consensus 654 ~f~~v~~g~e~~~~~~s~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~ 733 (827)
T KOG1801|consen 654 PFFNVHYGKERAGGGKSPVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLS 733 (827)
T ss_pred EEEEecccccccCCCCCcccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeE
Confidence 999998899877 66899999999999999986 356778888888866641 000010 1124677
Q ss_pred ccccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceEEEccCCCCchhHH
Q 038017 463 GAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 463 v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~ 540 (610)
+.|||+|||.| ++.++....++...+-++++ .++++ +|+|+|++++.+ +++|.--+.+..+.
T Consensus 734 v~tvD~fqg~e----~diii~s~vrs~~~g~igf~-~~~~R----lnvALtra~~~l-------~v~Gne~~L~~~~~ 795 (827)
T KOG1801|consen 734 VSTVDSFQGGE----RDIIIISTVRSIDEGSIGFE-CNLRR----LNVALTRARTCF-------WLVGNEITLAPSCS 795 (827)
T ss_pred EEecccccCCC----CceeEEEEEEecccCccchh-hhHHH----HHHhhcccccce-------EEecCccccccccc
Confidence 89999999999 44445556666666555555 55554 999999999875 45565555555444
No 5
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-39 Score=358.95 Aligned_cols=285 Identities=21% Similarity=0.254 Sum_probs=227.6
Q ss_pred HHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccccccccccc
Q 038017 255 KDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYF 334 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l 334 (610)
-+..+.+..||+|||-|..+. .+....||++|||||||+..|-+|.||.+ ++++||||||+||||.|.+..++..|+
T Consensus 770 l~~~~~~~~IVa~TClgi~~p-lf~~R~FD~cIiDEASQI~lP~~LgPL~~--s~kFVLVGDh~QLpPLV~s~ear~~Gl 846 (1100)
T KOG1805|consen 770 LKKFLDQTSIVACTCLGINHP-LFVNRQFDYCIIDEASQILLPLCLGPLSF--SNKFVLVGDHYQLPPLVRSSEARQEGL 846 (1100)
T ss_pred HHHHhCCCcEEEEEccCCCch-hhhccccCEEEEccccccccchhhhhhhh--cceEEEecccccCCccccchhhhhcCc
Confidence 445688999999999998853 34556799999999999999999999996 599999999999999999999999999
Q ss_pred ccCHHHHHHhcC-CCccccccccCCchhhhhcchhhhcCCCCccCcccccccc----------------ccccCC---CC
Q 038017 335 GRSLFERLSYLG-HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSY----------------EKQFLP---GP 394 (610)
Q Consensus 335 ~~SLFeRL~~~g-~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~----------------~~~~~~---~~ 394 (610)
+.|||+||.... .....|+.||||+.+|+.++|..||+|+|+++.....+.. ..+|.. +|
T Consensus 847 ~~SLFkrL~e~hpeaV~~Lt~QYRMn~~I~~LSN~L~Yg~~L~Cgs~eVs~~~~~~~~~~~~~~~~~s~s~~wl~~v~~p 926 (1100)
T KOG1805|consen 847 SESLFKRLSEKHPEAVSSLTLQYRMNREIMRLSNKLIYGNRLKCGSKEVSRASELDRKGALSVYMDDSSSDHWLQAVLEP 926 (1100)
T ss_pred chHHHHHHhhhCchHHHhHHHHHhhcchHHhhhhhheECCeeeecChhhhhhhccccchhhhhhcccccchHHHHHhhcC
Confidence 999999999965 5678999999999999999999999999999876544210 111211 23
Q ss_pred CCCCeEEEEeCCC--eeee-cCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeeccccccCCCCCcc
Q 038017 395 MYGPYAFINVFGG--REEF-IEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNESGSDLSG 463 (610)
Q Consensus 395 ~~~p~~fidv~~g--~e~~-~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v 463 (610)
..+++|+++... -++. .++...|..||..|+++++. ..|++++||++|+++|+- ... ...+++
T Consensus 927 -~~~v~f~~~D~~~~ie~~~e~~~i~N~~EA~li~~~~~~fv~sGv~~~dIGIis~YraQv~Li~~--~l~---~~~lEi 1000 (1100)
T KOG1805|consen 927 -TRDVCFVNTDTCSTIESQGEKGGITNHGEAKLISELVEDFVKSGVKPSDIGIISPYRAQVELIRK--ILS---SAVLEI 1000 (1100)
T ss_pred -CccceEEecCcccchhhhccccCcCchhHHHHHHHHHHHHHHcCCCHHHeeeeehHHHHHHHHHh--hcc---ccceee
Confidence 357889888542 3333 56667899999999999986 589999999999999983 111 123788
Q ss_pred cccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceEEEccCCCCchhHHHHH
Q 038017 464 AAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMK 543 (610)
Q Consensus 464 ~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~k 543 (610)
.|||.||||+ ++.++++..++++....+.+|+++++ +|||+|||+.++|++|+-.. +|..+ -...++|
T Consensus 1001 nTVD~yQGRD----Kd~IivSfvrsn~~~~~~eLLkD~rR----lNVAlTRAK~KLIlvGs~s~-l~~~~---~~~~l~~ 1068 (1100)
T KOG1805|consen 1001 NTVDRYQGRD----KDCIIVSFVRSNKKSKVGELLKDWRR----LNVALTRAKKKLILVGSKST-LESYP---PFRQLLK 1068 (1100)
T ss_pred eehhhhcCCC----CCEEEEEEEecCCcccHHHHHHhhHH----HHHHHHhhhceEEEEecccc-cccCc---hHHHHHh
Confidence 9999999999 77777777888888999999999986 99999999999999976332 23333 3445677
Q ss_pred HH-HHhHhhhhhhhhhhc
Q 038017 544 LF-QNEKHHHMAKEQFYG 560 (610)
Q Consensus 544 l~-~~e~~~~~~~e~~~~ 560 (610)
++ ++.|++-+....+++
T Consensus 1069 ~l~~~~~l~~~l~~~~~~ 1086 (1100)
T KOG1805|consen 1069 LLENRIELLTLLMRILKE 1086 (1100)
T ss_pred hhhhhhhHHHHHHHHHhh
Confidence 76 556777666655543
No 6
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-34 Score=313.60 Aligned_cols=309 Identities=20% Similarity=0.221 Sum_probs=228.1
Q ss_pred HHHHhhcCCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccchhHHHHHHhcCCeEEEEcccccchhcc
Q 038017 198 DLEELFSHSVDEDFSQSIVDIKYTLHESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHS 277 (610)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~l~~l~~~l~~l~l~~~~~~~~i~~~il~~a~VI~~T~sss~~l~~ 277 (610)
++..+|...+..+|..+-.+....-...+++.....+.++.--+++. ..+.....++++.|.||++|++++++++.
T Consensus 639 ~i~~iw~l~e~sRw~ly~~wl~~~~a~~~~~llr~~r~yr~vaer~~----~lrn~~da~llR~a~vigmTTTgaaryr~ 714 (1025)
T KOG1807|consen 639 WILVIWELKEKSRWLLYLYWLFDGSAESYQDLLRAQRKYRQVAERIE----TLRNVFDAFLLREADVIGMTTTGAARYRF 714 (1025)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccceeeeechhHHHHHH
Confidence 34455555555555544322222222333444444444443322221 22334467899999999999999998643
Q ss_pred -cccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccc-ccccccccccCHHHHHHhcCCCccccccc
Q 038017 278 -VAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVES-SVSGEAYFGRSLFERLSYLGHSKHLLSMQ 355 (610)
Q Consensus 278 -~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s-~~~~~~~l~~SLFeRL~~~g~~~~~L~~Q 355 (610)
+....+.+|||+|||.+.|+..+.+|. +...|+||||||+||+|.... +....+++..||||||+..|.|...|+.|
T Consensus 715 ilekv~pkivivEEAAEVlEahiIaal~-p~~EhviLIGDHKQLrP~~~vy~L~q~fnL~iSlFERLVe~glpfsrLn~Q 793 (1025)
T KOG1807|consen 715 ILEKVQPKIVIVEEAAEVLEAHIIAALT-PHTEHVILIGDHKQLRPFSGVYKLPQIFNLSISLFERLVEAGLPFSRLNLQ 793 (1025)
T ss_pred HHHHhCCcEEEEhhHhHHhhcchhhhhc-ccceeEEEecchhhcCCCcchhhHhHhcchhHHHHHHHHHcCCChhhhhHH
Confidence 556688999999999999999666665 467999999999999998654 45666899999999999999999999999
Q ss_pred cCCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCCCeeeecCCccCCHHHHHHHHHHHHH----
Q 038017 356 YRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLN---- 431 (610)
Q Consensus 356 YRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~g~e~~~~~S~~N~~EA~~V~~lv~~---- 431 (610)
|||||.|+++....|| ..|.++++|...+- .+| |...+.|+-|....++.++.|+.|..||.+++++++.
T Consensus 794 hRM~p~IsrllvpsiY-ddl~d~esvk~yed----I~g-ms~nlfFv~hnspee~~de~S~~NlhEa~mlv~l~kyli~q 867 (1025)
T KOG1807|consen 794 HRMRPCISRLLVPSIY-DDLLDSESVKEYED----IRG-MSKNLFFVQHNSPEECMDEMSIGNLHEAGMLVKLTKYLIQQ 867 (1025)
T ss_pred hhhchHHHHHhhHHHh-hhhhcchhhccccc----ccc-ccceeeEEecCCcccCcchhhhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 56888998876442 222 4568889998444445578999999999999999997
Q ss_pred ----ccccCCCcccccccEEEeeccccccCCCCCcccccccccccccccccchhhhhhcccCcchhhhccccccCCCccc
Q 038017 432 ----LNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELD 507 (610)
Q Consensus 432 ----~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~d 507 (610)
.+|.+.++|.+|...|.- +..+.....+.|.|||+|||.|+++| +++-++++.+|-+|+|...-+
T Consensus 868 ~y~psdIviLttY~gQk~ci~r--llp~~~~stv~VatVDsfQGeEndIV----LlSLVRsn~~griGFL~~anR----- 936 (1025)
T KOG1807|consen 868 QYKPSDIVILTTYNGQKECIKR--LLPQNYRSTVQVATVDSFQGEENDIV----LLSLVRSNISGRIGFLRQANR----- 936 (1025)
T ss_pred CCCccceEEEeechhHHHHHHH--HhHHHhcCcceEEEeccccCccccEE----EEEEEeccCCceeeeeeccch-----
Confidence 467888888888888862 22223344578899999999997766 455667777888888865543
Q ss_pred cceeeChhhceEEEcCCceEE
Q 038017 508 LPFEVTDEQLEMILFPRSTFI 528 (610)
Q Consensus 508 lnfavTr~e~~vI~~~~s~~v 528 (610)
+.|++|||++.+-++|...++
T Consensus 937 vCVALSRAr~glyiiGN~q~l 957 (1025)
T KOG1807|consen 937 VCVALSRARWGLYIIGNVQIL 957 (1025)
T ss_pred hhhhhhhhhcceEEecceeec
Confidence 999999999987666554443
No 7
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.6e-31 Score=306.29 Aligned_cols=257 Identities=25% Similarity=0.306 Sum_probs=203.1
Q ss_pred hhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccccccc
Q 038017 251 MGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSG 330 (610)
Q Consensus 251 ~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~ 330 (610)
.......+...+++|+||++++... .+....||+||||||||++++.+++|+.. ++++|++|||+||||++.+....
T Consensus 458 ~~~~~~~i~~~~~~~~~~~~~a~~~-~~~~~~fd~viiDEAsQ~~~~~~~~~l~~--~~~~il~GD~kQL~p~~~~~~~~ 534 (767)
T COG1112 458 KKKAVTKILEAADVVLSTLSIAGFS-ILKKYEFDYVIIDEASQATEPSALIALSR--AKKVILVGDHKQLPPTVFFKESS 534 (767)
T ss_pred HHHHHHHHHHhcCeEEEeccchhHH-HhcccccCEEEEcchhcccchhHHHhHhh--cCeEEEecCCccCCCeecchhhc
Confidence 3455667777788999998877642 23333799999999999999999999985 79999999999999999776556
Q ss_pred ccccccCHHHHHHhcCC-CccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCCC-CCCCeEEEEeCCCe
Q 038017 331 EAYFGRSLFERLSYLGH-SKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGP-MYGPYAFINVFGGR 408 (610)
Q Consensus 331 ~~~l~~SLFeRL~~~g~-~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~-~~~p~~fidv~~g~ 408 (610)
..++..|+|++++..+. ...+|+.||||||.|+.|+|..||+|+|..+++...........+.. ...|+.|+++ .|.
T Consensus 535 ~~~~~~slf~~~~~~~~~~~~~L~~qyRm~~~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 613 (767)
T COG1112 535 PEGLSASLFERLIDNGPEVVYLLRVQYRMHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPLEFYDT-LGA 613 (767)
T ss_pred ccchhHhHHHHHHHhCCchheeeeeecccChhhhhCchhhccCCccccCcchhhhhhhccccccccccCceEEEEe-cCc
Confidence 67899999999999985 88999999999999999999999999999998876544321111111 1358999999 554
Q ss_pred ee-ecCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeeccccccCCCCCcccccccccccccccccc
Q 038017 409 EE-FIEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYVENSNVTD 479 (610)
Q Consensus 409 e~-~~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~~qg~e~s~v~e 479 (610)
+. ..+.|..|..||..+..++.. ..++|++||++|+..|+... ... ...+.+.|||+|||+| ++
T Consensus 614 ~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~igvis~y~~q~~~i~~~~-~~~--~~~v~v~tvd~fQG~E----kd 686 (767)
T COG1112 614 EEFFESKSKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLL-NEA--GKGVEVGTVDGFQGRE----KD 686 (767)
T ss_pred ccccCccceecHHHHHHHHHHHHHHHHcCCcHHHcceecccHHHHHHHHHHH-Hhc--CCceEEeeccccCCcc----Cc
Confidence 44 478899999999999999986 24788999999999888531 111 1467789999999999 56
Q ss_pred hhhhhhcccCcc-hhhhccccccCCCccccceeeChhhceEEEcC
Q 038017 480 SLLLMKFYPLSS-GIVSHLLSDRDGRELDLPFEVTDEQLEMILFP 523 (610)
Q Consensus 480 s~vl~~f~sls~-~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~ 523 (610)
.++++..++... +..+++ .+.+ +|||++|||++.+|+++
T Consensus 687 vIi~S~v~s~~~~~~i~~l-~d~r----RLNVAlTRAk~~livvg 726 (767)
T COG1112 687 VIILSLVRSNDDKGEIGFL-GDPR----RLNVALTRAKRKLIVVG 726 (767)
T ss_pred EEEEEEEeecCCCcccccc-Cchh----hhhhhhhcccceEEEEc
Confidence 667777777766 455555 4443 39999999999988875
No 8
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=99.87 E-value=2.7e-23 Score=203.61 Aligned_cols=179 Identities=27% Similarity=0.386 Sum_probs=111.0
Q ss_pred cccCHHHHHHhcC-CCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCCCeeee-
Q 038017 334 FGRSLFERLSYLG-HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEF- 411 (610)
Q Consensus 334 l~~SLFeRL~~~g-~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~g~e~~- 411 (610)
|++|||+||...+ .+.++|++||||||+|++|+|..||+|+|.++++.............+...|+.|+|+ .|.+..
T Consensus 1 ~~~Slferl~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~~~~~ 79 (200)
T PF13087_consen 1 LDRSLFERLIKNGSVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAPLLKLLPSPQNPIVFIDV-SGSESSS 79 (200)
T ss_dssp TTS-HHHHHHHCT----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T-----SSTTSSEEEEE-----EEEE
T ss_pred CCccHHHHHHHcCCCCceecccccCCCHHHHHHHHHHHhchhcccCcccccccccccccccCCCCceEEEec-ccccccc
Confidence 5789999999999 9999999999999999999999999999999997766654411111222568999999 544443
Q ss_pred cC--CccCCHHHHHHHHHHHHHc-----------cccCCCcccccccEEEeeccccccCCC----CCccccccccccccc
Q 038017 412 IE--HSCRNMVEVSVVMKILLNL-----------NLEVPKTWAVTSNIVRFKNLADNESGS----DLSGAAFDCRSYVEN 474 (610)
Q Consensus 412 ~~--~S~~N~~EA~~V~~lv~~~-----------~i~v~tpy~~qv~iI~~~~~~~~~~~~----~~~v~tvD~~qg~e~ 474 (610)
.. +|+.|..||++|+++++.+ .|++++||++|+..|+-. +. ..... .+.+.|+|++||.|.
T Consensus 80 ~~~~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~-l~-~~~~~~~~~~~~v~Tvd~~QG~E~ 157 (200)
T PF13087_consen 80 ESSQTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKA-LR-SRYPSSPIKDIKVSTVDSFQGQEA 157 (200)
T ss_dssp TTC-SCEEEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHH-HH-HCSTCHHHHCSEEEEHHHHTT--E
T ss_pred cccccceechhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHH-Hh-hhccccccceEEEecHHHhccccc
Confidence 32 8999999999999999862 456666776666666521 11 11111 277899999999996
Q ss_pred ccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCC
Q 038017 475 SNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPR 524 (610)
Q Consensus 475 s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~ 524 (610)
+.|.-+++ ++....-.+++ .+.. .+|||+|||+..+|++|+
T Consensus 158 diVi~s~v----~~~~~~~~~f~-~~~~----r~nVA~SRAk~~liiig~ 198 (200)
T PF13087_consen 158 DIVIVSLV----RTNSSSNIGFL-NDPN----RLNVALSRAKSGLIIIGN 198 (200)
T ss_dssp EEEEEEE-------STTS-SGGG-C-HH----HHHHHHTSEEEEEEEEE-
T ss_pred eEEEEEec----cCCcccccccc-CCcC----eeeeeHHHHhcCEEEEec
Confidence 66544433 33333334444 4443 399999999999988764
No 9
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.4e-21 Score=221.36 Aligned_cols=255 Identities=18% Similarity=0.151 Sum_probs=191.8
Q ss_pred HhcCCeEEEEcccccchhc--ccccCCCcEEEEecCCCCChhHHHhhccCcC-cceEEEeCCCCcCCccccccccccccc
Q 038017 258 CFTKASLIFCTASSSYKLH--SVAMEQLKFLVIDEAAQLKESESAIPLQLPC-IQHAILVGDECQLPAMVESSVSGEAYF 334 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~--~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~-~k~~ILvGD~~QLpP~v~s~~~~~~~l 334 (610)
-....++++||+++++.+. ......|-.+++|||+|++|+++++|+...+ ..++||.|||+||+|++++..+.+.|+
T Consensus 416 ~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~DeAg~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~~gl 495 (775)
T KOG1804|consen 416 KVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDEAGVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEELGL 495 (775)
T ss_pred hccceEEEEeeccceeeeecccccccceeeeeecccccccCcccccccccccceeEEEEccCcccccccccchhhhhhcc
Confidence 4556789999999888653 3456788899999999999999999987533 348999999999999999999999999
Q ss_pred ccCHHHHHHhcC------------CCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEE
Q 038017 335 GRSLFERLSYLG------------HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFI 402 (610)
Q Consensus 335 ~~SLFeRL~~~g------------~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fi 402 (610)
++|||+|+.... .....|-..||+||.|....|+.||++.|..-...........| ...+.|.
T Consensus 496 ~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~eL~~~~~~~~v~~~~~w-----~~liif~ 570 (775)
T KOG1804|consen 496 DRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLGELTAEASEVDVRGLELW-----SGLILFY 570 (775)
T ss_pred cHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccccccccceeeeccHHHHHHHHhc-----ccceecc
Confidence 999999998852 34578999999999999999999999999865544333222111 1235555
Q ss_pred EeCCCeeee--cCCccCCHHHHHHHHHHHHH---------ccccCCCcccccccEEEeeccccccCCCCCcccccccccc
Q 038017 403 NVFGGREEF--IEHSCRNMVEVSVVMKILLN---------LNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSY 471 (610)
Q Consensus 403 dv~~g~e~~--~~~S~~N~~EA~~V~~lv~~---------~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~~qg 471 (610)
-+ .|..++ ...|+.|..||+.|..++.. .+|++++||++|+..|+- ........+..+++|-.|||
T Consensus 571 g~-~G~~~r~~~s~S~~n~~Ea~~V~~~~k~l~~~~~~~~~DIgvitpy~aq~~~i~~--~l~~~~~~~~~vgsVe~fqG 647 (775)
T KOG1804|consen 571 GA-PGFTERAGNSPSWLNLEEAAVVVRMTKALPLGEVAQPQDIGVITPYTAQVSEIRK--ALRRLGVPGVKVGSVEEFQG 647 (775)
T ss_pred cc-ccccccccCChhhccHHHHHHHHHHHhccCCCCccccccceeeCcHHHHHHHHHH--HhcccCCCCCcccceeeecc
Confidence 55 666655 55699999999999999886 368999999999998884 22223344566789999999
Q ss_pred cccccccchhhhhhcccCcc-----hhhhccccccCCCccccceeeChhhceEEEcCCceEE
Q 038017 472 VENSNVTDSLLLMKFYPLSS-----GIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFI 528 (610)
Q Consensus 472 ~e~s~v~es~vl~~f~sls~-----~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~v 528 (610)
+| +..++++..+|... +-.+.++.+..+ +++++++.+.-.|.++...++
T Consensus 648 qE----~~viiiStVrS~~~~~~~~~~~~~fls~pk~----l~v~V~rp~~l~i~~~~~h~~ 701 (775)
T KOG1804|consen 648 QE----PWVILGSTVRSFALPLLDDRYFGLFLSRPKR----LLVAVGRPRALLINLGNPHLL 701 (775)
T ss_pred cc----ceeeEeecccccCCCcccccccceeecCccc----ceeeccCccccccccCCcccc
Confidence 99 44445555554433 111115555554 999999999877777654443
No 10
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.78 E-value=9.1e-20 Score=205.19 Aligned_cols=356 Identities=19% Similarity=0.171 Sum_probs=241.5
Q ss_pred HHHHHHHHhhc--CCCCCccchh---hHHHHHHHHHHHHHHHHHhccC--CCChhHHHHhhcCCCCcccchhh----hhh
Q 038017 150 PLRSCIFNLGT--HLPKSYIGED---NFQVLGTVISFLDSFETLLFQD--NMGSEDLEELFSHSVDEDFSQSI----VDI 218 (610)
Q Consensus 150 ~l~~~~~~l~~--~~p~~~~~~~---~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~ 218 (610)
.|..|+..|.. ..|++.-.-. -+-...++...|+.+...++.+ ..+...+...|..++++....-. ...
T Consensus 844 ~ll~ev~rla~sl~~pgdv~ytcetagyf~~~~V~~~wee~l~~v~~~~~~~~~~~~~~~fpf~~~f~d~p~~vfeg~n~ 923 (1320)
T KOG1806|consen 844 ELLREVERLAKSLQAPGDVDYTCETAGYFFLAYVKRRWEEYLAKVDKGCDKDSVDIVSNRFPFHSYFGDKPKPPFEGYNK 923 (1320)
T ss_pred HHHHHHHHhhhhhcCccccccccchhhhhhhhHHHhhhHHHHHHhccCCCchhhhhHhhhCcchhhhhcCCCccccccch
Confidence 45556666543 3466533221 1224667888999998888842 12223466777777776554321 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCccccc---hhHHHHHHhcCCeEEEEcccccch-hcc--cccCCCcEEEEecCC
Q 038017 219 KYTLHESRSKCHSVLRELWNSFKELNLPSAMN---MGLLKDFCFTKASLIFCTASSSYK-LHS--VAMEQLKFLVIDEAA 292 (610)
Q Consensus 219 ~~~l~~~r~~~~~~l~~l~~~l~~l~l~~~~~---~~~i~~~il~~a~VI~~T~sss~~-l~~--~~~~~fD~vIIDEAs 292 (610)
..-.+....|...++.+..+|++.. +.... .......+-+.|+||+|||.+++- ... -....+|-++++||+
T Consensus 924 -~~d~~~a~~cf~hl~~ifqqLee~r-afellr~~~dr~~Yll~kqakiiamtcthaalkr~el~~lgf~ydnl~mEesa 1001 (1320)
T KOG1806|consen 924 -ENDMDYATGCFRHLEYIFQQLEEFR-AFELLRSGEDRELYLLVKQAKIIAMTCTHAALRRGDLVKLGFKYDNLLMEESA 1001 (1320)
T ss_pred -hhhhhhhhhhHHHHHHHHHHHHhcc-cccccccchhHhhccCcccceeeecccCChhhChhhHhhhceeechhhhhhcc
Confidence 1112345679999999988887753 22221 223355667999999999998763 222 224568999999999
Q ss_pred CCChhHHHhhccCcC-------cceEEEeCCCCcCCccccc-ccccccccccCHHHHHHhcCCCccccccccCCchhhhh
Q 038017 293 QLKESESAIPLQLPC-------IQHAILVGDECQLPAMVES-SVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHPSISF 364 (610)
Q Consensus 293 Q~~E~e~lipL~~~~-------~k~~ILvGD~~QLpP~v~s-~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~ 364 (610)
|++|.+..+|+.+.+ .+++|++|||.||||++++ ......+.++|+|.|+++.|.|.+-|+.|+|..++|+.
T Consensus 1002 qile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqkysnm~qslf~r~vRl~ip~i~lnaqgrar~sI~~ 1081 (1320)
T KOG1806|consen 1002 QILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKYSNMEQSLFTRLVRLGVPIIDLNAQGRARASIAS 1081 (1320)
T ss_pred CCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHHhcchhhhhhcceecccceecchhhhhHHHHHHH
Confidence 999999999987642 5899999999999999965 46667788999999999999999999999999999999
Q ss_pred cchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCC--Cee--eecCCccCCHHHHHHHHHHHHH--------c
Q 038017 365 FPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFG--GRE--EFIEHSCRNMVEVSVVMKILLN--------L 432 (610)
Q Consensus 365 f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~--g~e--~~~~~S~~N~~EA~~V~~lv~~--------~ 432 (610)
+.|+. | ..|..++.+..-+..+....|. ..+++|||+.+ |.. +....-++|.+||+.++.+..+ .
T Consensus 1082 Ly~wr-y-~lLg~l~~v~~lp~f~~aNagf-~~~~qlinv~Df~g~gEt~p~p~fyQnlgeaey~vAly~YMr~Lgypa~ 1158 (1320)
T KOG1806|consen 1082 LYNWR-Y-PLLGNLPHVSPLPRFQYANAGF-AYEFQFINVPDFKGSGETEPSPGFYQNLGEAEYAVALFQYMRLLGYPAN 1158 (1320)
T ss_pred HHHhh-h-cccccCcCCccchhhhccccCc-eeeEEEecchhhccccccCCCcccccCCchhhhHHHHHHHHHHhCCchh
Confidence 99988 5 4566677666555444444443 34899999976 433 3367788999999999999987 4
Q ss_pred cccCCCcccccccEEE--eeccc--cccCCCCCcccccccccccccccccchhhhhhcccCcchhhhccccccCCCcccc
Q 038017 433 NLEVPKTWAVTSNIVR--FKNLA--DNESGSDLSGAAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDL 508 (610)
Q Consensus 433 ~i~v~tpy~~qv~iI~--~~~~~--~~~~~~~~~v~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dl 508 (610)
+|.+.|.|.+|..+|+ +...+ ..-.+.-..+.|||-+||..++-+.-+.+ ....++++ .+.+ ++
T Consensus 1159 Kisilttyngq~~lirdii~rrc~~nPfig~pAkv~tvdk~qgqqndfiIlslv-------~tr~~gh~-rdvr----rl 1226 (1320)
T KOG1806|consen 1159 KISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKVTTVDKFQGQQNDFIILSLV-------RTREVGHL-RDVR----RL 1226 (1320)
T ss_pred HeeEEEeecchHHHHHHHHHHhccCCCccCCcccCCccccccccccceEEeeeh-------hhhhhhhh-ccHH----HH
Confidence 6777888999998886 11111 11222223467999999966444333322 22333444 3333 27
Q ss_pred ceeeChhhceEEEc
Q 038017 509 PFEVTDEQLEMILF 522 (610)
Q Consensus 509 nfavTr~e~~vI~~ 522 (610)
-+++++++--+-++
T Consensus 1227 vva~srarlglyv~ 1240 (1320)
T KOG1806|consen 1227 VVAMSRARLGLYVL 1240 (1320)
T ss_pred HHHHHHhhccchhH
Confidence 77788776554444
No 11
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.59 E-value=3.4e-16 Score=155.38 Aligned_cols=76 Identities=36% Similarity=0.531 Sum_probs=51.9
Q ss_pred hhHHHHHHhcCCeEEEEcccccchhccccc-CCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccc
Q 038017 251 MGLLKDFCFTKASLIFCTASSSYKLHSVAM-EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESS 327 (610)
Q Consensus 251 ~~~i~~~il~~a~VI~~T~sss~~l~~~~~-~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~ 327 (610)
++.+...+++.++||+||++++........ ..||+||||||||++|+++++||.+. .+++||||||+||||++.|+
T Consensus 160 ~~~~~~~~l~~~~vi~~T~~~~~~~~~~~~~~~~d~vIvDEAsq~~e~~~l~~l~~~-~~~~vlvGD~~QLpP~v~s~ 236 (236)
T PF13086_consen 160 REELRRFILKEADVIFTTLSSAASPFLSNFKEKFDVVIVDEASQITEPEALIPLSRA-PKRIVLVGDPKQLPPVVKSE 236 (236)
T ss_dssp HHHHHHHHHHT-SEEEEETCGGG-CCGTT-----SEEEETTGGGS-HHHHHHHHTTT-BSEEEEEE-TTS-----S--
T ss_pred ccchhhhhcccccccccccccchhhHhhhhcccCCEEEEeCCCCcchHHHHHHHHHh-CCEEEEECChhhcCCeeCCC
Confidence 456678999999999999999854322222 27999999999999999999999763 49999999999999999763
No 12
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.11 E-value=1.5e-06 Score=85.80 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCCcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCC
Q 038017 281 EQLKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRM 358 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRm 358 (610)
...+++||||||++.......-+. .....++|++||++||||+-. -+.|.-+...+...+.|++-+|-
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~----------g~~~~~l~~~~~~~~~L~~i~Rq 161 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGA----------GSPFADLQESGGITVELTEIRRQ 161 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCST----------TCHHHHHCGCSTTEEEE---SCC
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcC----------CcHHHHHHhcCCCeEEeChhhcC
Confidence 456999999999999766433332 222468999999999999852 35688888877669999999998
Q ss_pred c-hhhhhcchhhhcCCCC
Q 038017 359 H-PSISFFPNSYFYENKI 375 (610)
Q Consensus 359 h-p~I~~f~s~~FY~~~L 375 (610)
. +.+..... .+-+|..
T Consensus 162 ~~~~~~~~~~-~~~~g~~ 178 (196)
T PF13604_consen 162 KDPELREAAK-AIREGDA 178 (196)
T ss_dssp CCTHHHHHHH-HHCTT--
T ss_pred CChHHHHHHH-HHHcCCC
Confidence 6 66665554 4444443
No 13
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.69 E-value=3.8e-05 Score=87.68 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=54.2
Q ss_pred CCCcEEEEecCCCCChhHHHhhcc-CcCcceEEEeCCCCcCCccccc----cccccc--ccccCHHHHHHh---------
Q 038017 281 EQLKFLVIDEAAQLKESESAIPLQ-LPCIQHAILVGDECQLPAMVES----SVSGEA--YFGRSLFERLSY--------- 344 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lipL~-~~~~k~~ILvGD~~QLpP~v~s----~~~~~~--~l~~SLFeRL~~--------- 344 (610)
.++|+||||||||+..+...--+. .+...|+||+||+.||||+-.. +.+... ++....-..+..
T Consensus 258 l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvGD~~QLpsV~~G~vl~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (586)
T TIGR01447 258 LPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLGDKNQLPSVEAGAVLGDLCELASIGYLFQSAQAYALCKKINSKTR 337 (586)
T ss_pred CcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEECChhhCCCCCCChhHHHHHHhhccccchhhhhhhccccccccccc
Confidence 468999999999999764322111 2345799999999999998432 221111 111100001100
Q ss_pred cCCC--ccccccccCCch--hhhhcchhh
Q 038017 345 LGHS--KHLLSMQYRMHP--SISFFPNSY 369 (610)
Q Consensus 345 ~g~~--~~~L~~QYRmhp--~I~~f~s~~ 369 (610)
...+ .+.|++.||-.. .|..+....
T Consensus 338 ~~i~~~~~~L~~~~R~~~~S~I~~lA~~I 366 (586)
T TIGR01447 338 NPLSDNVCFLKTSHRFGKDSGIGQLAKAI 366 (586)
T ss_pred CCCCCcEEEeceeecCCCCccHHHHHHHH
Confidence 0133 789999999965 588887644
No 14
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.52 E-value=0.00012 Score=85.89 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCCChhHHHhhcc-CcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC-CCccccccccCCc
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQ-LPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG-HSKHLLSMQYRMH 359 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~-~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g-~~~~~L~~QYRmh 359 (610)
..|+|||||||++......--+. .+...|+|||||+.||||+-.. ..|..++..+ .+.+.|++.||-.
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLpsV~~G----------~v~~dl~~~~~~~~~~L~~i~RQ~ 485 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLPSVGPG----------QVLKDLILSQAIPVTRLTKVYRQA 485 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEECccccccCCCCC----------chHHHHHhcCCCCEEEeCeeeccC
Confidence 47999999999998753221111 2245799999999999997421 3466677665 7899999999986
Q ss_pred --hhhhhcchhh
Q 038017 360 --PSISFFPNSY 369 (610)
Q Consensus 360 --p~I~~f~s~~ 369 (610)
..|..+....
T Consensus 486 ~~s~i~~~a~~i 497 (720)
T TIGR01448 486 AGSPIITLAHGI 497 (720)
T ss_pred CCcHHHHHHHHH
Confidence 3477666543
No 15
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.34 E-value=0.00019 Score=82.25 Aligned_cols=93 Identities=25% Similarity=0.306 Sum_probs=55.6
Q ss_pred CCCcEEEEecCCCCChhHHHhhcc-CcCcceEEEeCCCCcCCccccc----ccccc--cccccCHHHHHHhc--------
Q 038017 281 EQLKFLVIDEAAQLKESESAIPLQ-LPCIQHAILVGDECQLPAMVES----SVSGE--AYFGRSLFERLSYL-------- 345 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lipL~-~~~~k~~ILvGD~~QLpP~v~s----~~~~~--~~l~~SLFeRL~~~-------- 345 (610)
.++|+|||||||++..+....-+. .+...|+|||||+.||||+=.. +.+.. .++...-.+.+...
T Consensus 264 l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~~QL~sV~~G~VL~DL~~~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (615)
T PRK10875 264 LHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDRDQLASVEAGAVLGDICRFAEAGYSAERAQQLSRLTGCHLPAG 343 (615)
T ss_pred CCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecchhhcCCCCCCchHHHHHHhhhcccchhhhhHHhhhcccccccc
Confidence 457999999999998654322221 2345799999999999998332 22211 12222212222110
Q ss_pred ---CCCc-----cccccccCCc--hhhhhcchhhhcCCC
Q 038017 346 ---GHSK-----HLLSMQYRMH--PSISFFPNSYFYENK 374 (610)
Q Consensus 346 ---g~~~-----~~L~~QYRmh--p~I~~f~s~~FY~~~ 374 (610)
..+. ++|++.||-. ..|..+.... -+|.
T Consensus 344 ~~~~~~~~~~~~~~L~~~~Rf~~~SgI~~lA~~I-~~G~ 381 (615)
T PRK10875 344 TGTEAASVRDSLCLLRKSYRFGSDSGIGQLAAAV-NRGD 381 (615)
T ss_pred ccccCCccccceeecceeecCCCCCcHHHHHHHH-HCCC
Confidence 1122 6899999985 5588887644 4443
No 16
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=97.26 E-value=0.00022 Score=82.61 Aligned_cols=185 Identities=24% Similarity=0.272 Sum_probs=124.7
Q ss_pred HHHHhcCCeEEEEcccccchh--cccccCCCcEEEEecCCCCChhHHHhhccCcC-cceEEEeCCCCcCCcccccccccc
Q 038017 255 KDFCFTKASLIFCTASSSYKL--HSVAMEQLKFLVIDEAAQLKESESAIPLQLPC-IQHAILVGDECQLPAMVESSVSGE 331 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l--~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~-~k~~ILvGD~~QLpP~v~s~~~~~ 331 (610)
...+++ .+|++.|...+..+ .....+.|...+.|||+|+.+++.+.||.++. .++++|+||+.||-|.+.+....+
T Consensus 237 ~~~~~~-Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~ql~~~l~s~~~~~ 315 (775)
T KOG1804|consen 237 VEDLFK-HRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQLTPFLNSVAREE 315 (775)
T ss_pred hhhhcc-cceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccccCCCCceeeecccccccccchhhhhhhh
Confidence 455666 78888887665522 22334578899999999999999999987653 579999999999999988766555
Q ss_pred cccccCHHHHHHh----cCCCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCCC
Q 038017 332 AYFGRSLFERLSY----LGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGG 407 (610)
Q Consensus 332 ~~l~~SLFeRL~~----~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~g 407 (610)
..+. .+-.++.. .|-+.+-....||++-.|..|.+..||.. .++++...-... ......|..|... .|
T Consensus 316 ~~~~-~~~~~~~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il--~~~p~~a~~k~~----~~rl~~p~~~~~~-~~ 387 (775)
T KOG1804|consen 316 QALH-LLLCRLPEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYIL--VCAPSNASGKQP----AHRLHYPLTFSTA-RG 387 (775)
T ss_pred hhhh-hcccccccccccccCCCcCCccchHHHHHHHHhcchHHHhh--cccccccccccc----ccccccccccccc-cc
Confidence 4444 33333322 24677889999999999999999999954 333333322211 1111345666655 34
Q ss_pred eeee--cCCccCCHHHHHHHHHHHHHcc--------------ccCCCcccccccEEE
Q 038017 408 REEF--IEHSCRNMVEVSVVMKILLNLN--------------LEVPKTWAVTSNIVR 448 (610)
Q Consensus 408 ~e~~--~~~S~~N~~EA~~V~~lv~~~~--------------i~v~tpy~~qv~iI~ 448 (610)
.... ....+.|..|+..++.-++... ++..+++..|++-++
T Consensus 388 ~~~~~~~~~~~~~~~~v~~~~~~~e~~~~~~~~~i~i~t~~sag~~~~~g~~v~~f~ 444 (775)
T KOG1804|consen 388 EDVRAKSSTAWYNNAEVSEVVEKVEELRKVWPYRWGITTCTSAGCVTSYGFQVGHFR 444 (775)
T ss_pred ccccccchhHHhhhHHHHHHHHHHHHHhhccceEEEEeeccceeeeeccccccccee
Confidence 3332 4566788888888888777643 455556666666665
No 17
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.20 E-value=0.00031 Score=70.27 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCch
Q 038017 281 EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHP 360 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmhp 360 (610)
..++.+|||||..++.......+...+++.++++|||.|.+..-.........+.... .....++..||+..
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~l~~~~~~~~~~l~GDp~Q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~ 132 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLLLLSLSPAKNVILFGDPLQIPYISRNDSFLLPHFISDI--------SHRFGKRTSYRCPS 132 (234)
T ss_pred CcCCEEEEeccccCChHHHHHHHhhccCcceEEEECchhccCCcccccceecccccce--------eeeecceeEeeccc
Confidence 3589999999999997555544444467899999999999876433211111111111 34456778899999
Q ss_pred hhhhcchhh
Q 038017 361 SISFFPNSY 369 (610)
Q Consensus 361 ~I~~f~s~~ 369 (610)
.+..+.+..
T Consensus 133 ~~~~~~~~~ 141 (234)
T PF01443_consen 133 DRFDIISAL 141 (234)
T ss_pred ccceeeecc
Confidence 998888866
No 18
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.01 E-value=0.00058 Score=80.41 Aligned_cols=67 Identities=22% Similarity=0.222 Sum_probs=48.1
Q ss_pred CCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCc
Q 038017 282 QLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMH 359 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmh 359 (610)
..|+|||||||++..... ++-.......++|||||+.||||+-.. ..|..|.. ..+.+.|+.-||-.
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG----------~~f~~l~~-~~~~~~Lt~I~RQ~ 507 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAG----------AAFRAIAE-RIGYAELETIRRQR 507 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECChHHccccccC----------cHHHHHHH-hhCeEEeeeEEecC
Confidence 569999999999986542 222222234689999999999998632 24665554 36778899999964
No 19
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.84 E-value=0.0011 Score=80.27 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCch
Q 038017 283 LKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMHP 360 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmhp 360 (610)
-++|||||||++......--|. .....++|||||+.||||+-.. ..|..|.. ..+.+.|++-||-..
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG----------~~f~~l~~-~i~~a~LteI~RQ~~ 537 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAG----------AAFRAIAD-RIGYAELETIYRQRE 537 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCHHHcCCCCCC----------cHHHHHHh-hcCEEEeeeeeecCC
Confidence 4799999999998765433222 2234799999999999997532 34666665 567889999999754
Q ss_pred h
Q 038017 361 S 361 (610)
Q Consensus 361 ~ 361 (610)
+
T Consensus 538 ~ 538 (1102)
T PRK13826 538 Q 538 (1102)
T ss_pred h
Confidence 3
No 20
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.82 E-value=0.0015 Score=81.45 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc-CCCccccccccCC
Q 038017 282 QLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL-GHSKHLLSMQYRM 358 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~-g~~~~~L~~QYRm 358 (610)
..+++||||||++..... ++-+......++|||||+.||||+- .-+.|+-|+.. +.+.+.|++-+|-
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~----------aG~~F~~lq~~~~~~ta~L~eI~RQ 999 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIA----------PGQPFRLQQTRSAADVVIMKEIVRQ 999 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCC----------CCHHHHHHHHcCCCCeEEeCeeecC
Confidence 358999999999987553 2222222346999999999999975 23569999886 6899999999999
Q ss_pred chhhhhcch
Q 038017 359 HPSISFFPN 367 (610)
Q Consensus 359 hp~I~~f~s 367 (610)
.|.+-.-+.
T Consensus 1000 ~~elr~AV~ 1008 (1623)
T PRK14712 1000 TPELREAVY 1008 (1623)
T ss_pred CHHHHHHHH
Confidence 888666555
No 21
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.78 E-value=0.0017 Score=78.04 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCc
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMH 359 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmh 359 (610)
..++|||||||++......--|. .....++|||||+.||||+-. -..|.-|... .+.+.|++-+|-.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVGD~~QLpsV~a----------G~~f~~L~~~-~~~a~LteI~RQ~ 501 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA----------GAAFRSIHER-HGGAEIGEVRRQR 501 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEECCHHHcCCCCC----------CchHHHHHHh-cCeEEeceeecCC
Confidence 45899999999998655333222 223579999999999999731 1346655543 6778999999985
Q ss_pred hhhhhcchhhhcCCCC
Q 038017 360 PSISFFPNSYFYENKI 375 (610)
Q Consensus 360 p~I~~f~s~~FY~~~L 375 (610)
.....-....+-.|+.
T Consensus 502 ~~~~r~aa~~i~~G~~ 517 (988)
T PRK13889 502 EDWQRDATRDLATGRT 517 (988)
T ss_pred CHHHHHHHHHHHcCCc
Confidence 4422222333444443
No 22
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.43 E-value=0.0011 Score=71.58 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCcEEEEecCCCCChhHHHhhcc--------------CcCcceEEEeCCCCcCCcccccc
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQ--------------LPCIQHAILVGDECQLPAMVESS 327 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~--------------~~~~k~~ILvGD~~QLpP~v~s~ 327 (610)
..+++||||+|++.-. ++-.+. .+++..+||+||..||||++...
T Consensus 102 ~~~~lIiDEism~~~~-~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf~QlpPV~~~~ 160 (364)
T PF05970_consen 102 KADVLIIDEISMVSAD-MLDAIDRRLRDIRKSKDSDKPFGGKQVILFGDFLQLPPVVPRG 160 (364)
T ss_pred hheeeecccccchhHH-HHHHHHHhhhhhhcccchhhhcCcceEEeehhhhhcCCCcccc
Confidence 4599999999999743 222221 24678999999999999998654
No 23
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.40 E-value=0.0031 Score=79.57 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=57.7
Q ss_pred CCcEEEEecCCCCChhHHHhhccC--cCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc-CCCccccccccCC
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQL--PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL-GHSKHLLSMQYRM 358 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~~--~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~-g~~~~~L~~QYRm 358 (610)
..+++||||||++.-....--+.. ....|+|||||+.||||+-. -..|..|+.. +.+.+.|++-+|-
T Consensus 1062 ~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~a----------G~~f~~l~~~~~i~~~~L~eI~RQ 1131 (1747)
T PRK13709 1062 SNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAP----------GQPFRLMQTRSAADVAIMKEIVRQ 1131 (1747)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHhcCCCCC----------ChHHHHHHHhCCCCeEEeCeEEcC
Confidence 358999999999986553333322 22369999999999999742 2568888874 6899999999998
Q ss_pred chhhhhcchhhhcCCC
Q 038017 359 HPSISFFPNSYFYENK 374 (610)
Q Consensus 359 hp~I~~f~s~~FY~~~ 374 (610)
.+.+-.-+ ..+..|+
T Consensus 1132 ~~~lr~Av-~~~~~g~ 1146 (1747)
T PRK13709 1132 TPELREAV-YSLINRD 1146 (1747)
T ss_pred cHHHHHHH-HHHHccC
Confidence 87433332 2344443
No 24
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.86 E-value=0.048 Score=64.40 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=57.3
Q ss_pred CCCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCcccccccc
Q 038017 281 EQLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQY 356 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QY 356 (610)
..|++|+|||+--...... +-.|. ...+++.+|||+.|= +. ...|-....|.++... +...+.|+++|
T Consensus 208 ~~~~~IlVDEfQDtn~~Q~~ll~~L~-~~~~~l~vVGD~~Qs---IY----~fRgA~~~~~~~f~~~~~~~~~i~L~~Ny 279 (726)
T TIGR01073 208 RKFQYIHVDEYQDTNRAQYTLVRLLA-SRFRNLCVVGDADQS---IY----GWRGADIQNILSFEKDYPNATTILLEQNY 279 (726)
T ss_pred HhCCEEEEEccccCCHHHHHHHHHHh-CCCCEEEEEeCCCcc---cc----ccCCCChHHHHHHHHhCCCCeEEECccCC
Confidence 4799999999998887653 22333 234789999999982 11 1112223334343332 23458899999
Q ss_pred CCchhhhhcchhhhcCC
Q 038017 357 RMHPSISFFPNSYFYEN 373 (610)
Q Consensus 357 Rmhp~I~~f~s~~FY~~ 373 (610)
|++|.|.++.|..+-.+
T Consensus 280 RS~~~Il~~an~li~~~ 296 (726)
T TIGR01073 280 RSTKNILQAANEVIEHN 296 (726)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999887543
No 25
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.27 E-value=0.22 Score=58.37 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCcEEEEecCCCCChhHHH--hhccC-cCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc-C-CCcccccccc
Q 038017 282 QLKFLVIDEAAQLKESESA--IPLQL-PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL-G-HSKHLLSMQY 356 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~l--ipL~~-~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~-g-~~~~~L~~QY 356 (610)
.|+.|+|||+--++....- -.|.. ....++++|||+.|---- -.|-..+++..+... + ...+.|++.|
T Consensus 430 ~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY~-------frGa~~~~~~~f~~~f~~~~~~~L~~nY 502 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYR-------FSGADLSLTTAFHERFGEGDRCHLDTTY 502 (684)
T ss_pred cccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCccccc-------cCCCChHHHHHHHhhcCCCeEEEeCCCC
Confidence 6899999999999876532 22321 123589999999995321 112233444444332 2 3457899999
Q ss_pred CCchhhhhcchhhh
Q 038017 357 RMHPSISFFPNSYF 370 (610)
Q Consensus 357 Rmhp~I~~f~s~~F 370 (610)
|+.+.|.++.|..+
T Consensus 503 Rs~~~I~~~An~~i 516 (684)
T PRK11054 503 RFNSRIGEVANRFI 516 (684)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999654
No 26
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.05 E-value=0.054 Score=63.93 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCCCChhHH-HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCccccccccC
Q 038017 281 EQLKFLVIDEAAQLKESES-AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQYR 357 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~-lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QYR 357 (610)
..|++|+|||+--+..... ++-+......++.+|||+.|= +. ...|-+...|.++... +...+.|+.+||
T Consensus 212 ~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~dQs---IY----~fRGA~~~~~~~f~~~~~~~~~i~L~~NyR 284 (721)
T PRK11773 212 ERFTHILVDEFQDTNAIQYAWIRLLAGDTGKVMIVGDDDQS---IY----GWRGAQVENIQRFLNDFPGAETIRLEQNYR 284 (721)
T ss_pred HhCCEEEEEchhcCCHHHHHHHHHHhCCCCeEEEEecCccc---cc----ccCCCChHHHHHHHHhCCCCeEEECCcCCC
Confidence 4799999999998886542 222222234789999999982 11 1112223334444332 345688999999
Q ss_pred CchhhhhcchhhhcCC
Q 038017 358 MHPSISFFPNSYFYEN 373 (610)
Q Consensus 358 mhp~I~~f~s~~FY~~ 373 (610)
+.+.|.++.|..+-.+
T Consensus 285 St~~Il~~an~li~~n 300 (721)
T PRK11773 285 STANILKAANALIANN 300 (721)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999887543
No 27
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.00 E-value=0.02 Score=59.35 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=46.1
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEE
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~ 590 (610)
+|+++.++|.. .+++.|.|.+|||||++++.|.... +. ..+.. + =+=+
T Consensus 1 l~~eQ~~~i~~~~~~~lV~a~AGSGKT~~l~~ri~~l--l~---~~~~~-------~-------------------~~Il 49 (315)
T PF00580_consen 1 LTDEQRRIIRSTEGPLLVNAGAGSGKTTTLLERIAYL--LY---EGGVP-------P-------------------ERIL 49 (315)
T ss_dssp S-HHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHH--HH---TSSST-------G-------------------GGEE
T ss_pred CCHHHHHHHhCCCCCEEEEeCCCCCchHHHHHHHHHh--hc---cccCC-------h-------------------HHhe
Confidence 57788888877 5678999999999999999887532 11 00000 0 1138
Q ss_pred EEecCHHHHHHHHHHhhh
Q 038017 591 FVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 591 fvt~s~~L~~~vk~~~~~ 608 (610)
.+|.+...+.+++..+..
T Consensus 50 ~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 50 VLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred ecccCHHHHHHHHHHHHH
Confidence 999999999999987754
No 28
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.97 E-value=0.028 Score=69.14 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCcCc-ceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccC
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLPCI-QHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYR 357 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~~~-k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYR 357 (610)
..|++|+|||.--..... .+-.|...+. ..+++|||++|=== .-.|-+...|-++.......+.|+++||
T Consensus 295 ~ry~~vLVDEFQDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQSIY-------~FRGAD~~~~~~~~~~~~~~~~L~~NyR 367 (1087)
T TIGR00609 295 EQYPIALIDEFQDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQAIY-------SFRGADIFTYLQAKSKADARYTLGTNWR 367 (1087)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHHhCCCCCeEEEEECCccccc-------cCCCCCHHHHHHHHHhcCcEEECCCCCC
Confidence 489999999999888654 3333432111 27999999999421 1112233445555443335689999999
Q ss_pred Cchhhhhcchhhhc
Q 038017 358 MHPSISFFPNSYFY 371 (610)
Q Consensus 358 mhp~I~~f~s~~FY 371 (610)
++|.|.++.|..|-
T Consensus 368 S~~~Iv~~~N~lf~ 381 (1087)
T TIGR00609 368 STPALVGSLNKLFS 381 (1087)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999999884
No 29
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.92 E-value=0.027 Score=72.83 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCCChhHHHhhc--cCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC-CCccccccccCC
Q 038017 282 QLKFLVIDEAAQLKESESAIPL--QLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG-HSKHLLSMQYRM 358 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL--~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g-~~~~~L~~QYRm 358 (610)
.-+++||||||++.-....-.+ ......++|||||+.||||+- -+ ..|+-+...+ .+.+.|+.-+|-
T Consensus 1112 ~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~---------aG-~~f~~~~~~~~~~~~~L~~I~RQ 1181 (1960)
T TIGR02760 1112 RNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLA---------AG-KPFELAITFDIIDTAIMKEIVRQ 1181 (1960)
T ss_pred cccEEEEEccccccHHHHHHHHHhccCCCCEEEEeCChhhcCCCC---------CC-cCHHHHHhcCCCCeEEeeeEecC
Confidence 3489999999999876533332 222347999999999999953 12 2377677655 888999999998
Q ss_pred --chhhhhcch
Q 038017 359 --HPSISFFPN 367 (610)
Q Consensus 359 --hp~I~~f~s 367 (610)
.|.+..-.+
T Consensus 1182 ~~~~~l~~a~~ 1192 (1960)
T TIGR02760 1182 NNSAELKAAHN 1192 (1960)
T ss_pred CCCHHHHHHHH
Confidence 366655444
No 30
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.90 E-value=0.027 Score=72.76 Aligned_cols=66 Identities=21% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccC
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYR 357 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYR 357 (610)
+-|+|||||||++.-.++.--+. .....++|||||+.||||+-. -+.|.-|...|.+.+.|..--|
T Consensus 529 ~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~a----------G~~f~~L~~~gv~t~~l~~i~r 596 (1960)
T TIGR02760 529 NKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGMSA----------GSAIDLLKEGGVTTYAWVDTKQ 596 (1960)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcChhhcCcccc----------chHHHHHHHCCCcEEEeecccc
Confidence 45899999999999776544443 223479999999999999632 2346667777777776665433
No 31
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.61 E-value=0.047 Score=63.85 Aligned_cols=84 Identities=19% Similarity=0.109 Sum_probs=58.1
Q ss_pred CCCcEEEEecCCCCChhHHHhh-ccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCccccccccC
Q 038017 281 EQLKFLVIDEAAQLKESESAIP-LQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQYR 357 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lip-L~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QYR 357 (610)
..|++|+|||+--+.....-+- +......++++|||+.|-=- ...|-+...|.++... +...+.|++.||
T Consensus 206 ~~~~~ilVDE~QDtn~~Q~~ll~~l~~~~~~l~~VGD~~QsIY-------~frGA~~~~~~~f~~~~~~~~~~~L~~NyR 278 (672)
T PRK10919 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIY-------SWRGARPQNLVLLSQDFPALQVIKLEQNYR 278 (672)
T ss_pred hcCCEEEEEchhcCCHHHHHHHHHHHcCCCEEEEEcCCccccc-------ccCCCChHHHHHHHHhCCCCcEEECCCCCC
Confidence 4799999999999987653222 22222468999999999532 1122334455554443 245689999999
Q ss_pred Cchhhhhcchhhhc
Q 038017 358 MHPSISFFPNSYFY 371 (610)
Q Consensus 358 mhp~I~~f~s~~FY 371 (610)
+.+.|.++.|..+=
T Consensus 279 s~~~I~~~an~li~ 292 (672)
T PRK10919 279 SSGRILKAANILIA 292 (672)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999998764
No 32
>PRK13909 putative recombination protein RecB; Provisional
Probab=94.38 E-value=0.038 Score=66.90 Aligned_cols=84 Identities=24% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccC---cC-----cceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC-CCc
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQL---PC-----IQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG-HSK 349 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~---~~-----~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g-~~~ 349 (610)
..|+.++|||+--..... .+-||.- .+ .+.+.+|||++|== ..-.|-...+|.++...- ...
T Consensus 327 ~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQSI-------Y~FRGA~~~~f~~~~~~~~~~~ 399 (910)
T PRK13909 327 SKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQSI-------YRFRGGKKELFDKVSKDFKQKV 399 (910)
T ss_pred cCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhhh-------hhhcCCChHHHHHHHHHhhhhh
Confidence 479999999999988743 4555531 01 35799999999942 111222345777765532 246
Q ss_pred cccccccCCchhhhhcchhhhc
Q 038017 350 HLLSMQYRMHPSISFFPNSYFY 371 (610)
Q Consensus 350 ~~L~~QYRmhp~I~~f~s~~FY 371 (610)
..|+++||++|.|.+|.|..|-
T Consensus 400 ~~L~~NyRS~~~Iv~~~N~~f~ 421 (910)
T PRK13909 400 DNLDTNYRSAPLIVDFVNEVFK 421 (910)
T ss_pred cccccCCCCChHHHHHHHHHHH
Confidence 7899999999999999999883
No 33
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.37 E-value=0.051 Score=58.45 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=57.3
Q ss_pred ccCCCcEEEEecCCCCCh----------hHHHhhccCcCcceEEEeCCCCc-CCcccccccccccccccCHHHHHHhc-C
Q 038017 279 AMEQLKFLVIDEAAQLKE----------SESAIPLQLPCIQHAILVGDECQ-LPAMVESSVSGEAYFGRSLFERLSYL-G 346 (610)
Q Consensus 279 ~~~~fD~vIIDEAsQ~~E----------~e~lipL~~~~~k~~ILvGD~~Q-LpP~v~s~~~~~~~l~~SLFeRL~~~-g 346 (610)
....+|+||||||-.+.+ .+.+.-+.. .++.+|++-|+.| +.|-- . .....++.+... +
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~-~~kv~v~f~D~~Q~i~~~e---~-----~~~~~l~~~~~~~~ 150 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK-RAKVVVFFYDENQSIRPSE---I-----GTLENLEEIAENLG 150 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh-cCCEEEEEEccccEeeccc---C-----CCHHHHHHHHHhcC
Confidence 345799999999999887 233444433 3567776666666 45521 0 112225444443 3
Q ss_pred CC--c-cccccccCC--chhhhhcchhhhcCCCCc
Q 038017 347 HS--K-HLLSMQYRM--HPSISFFPNSYFYENKIL 376 (610)
Q Consensus 347 ~~--~-~~L~~QYRm--hp~I~~f~s~~FY~~~L~ 376 (610)
.. . +.|+.|||| .+++.+|++..++.....
T Consensus 151 ~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~ 185 (352)
T PF09848_consen 151 IEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNIS 185 (352)
T ss_pred CccccCcCcCcceecCCCHHHHHHHHHHHhccccC
Confidence 22 2 489999999 899999999998854443
No 34
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.097 Score=64.78 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=63.0
Q ss_pred CCCcEEEEecCCCCChh--HHHhhccCcC---cceEEEeCCCCcCCcccccccccccccccCHHHHHHh--cCCCccccc
Q 038017 281 EQLKFLVIDEAAQLKES--ESAIPLQLPC---IQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY--LGHSKHLLS 353 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~--e~lipL~~~~---~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~--~g~~~~~L~ 353 (610)
.+|+.+.|||+--.... ..+-.|.... ...++||||+||== -.-.|-+..+|..... .-...+.|+
T Consensus 377 ~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQSI-------Y~FRgAD~~~f~~a~~~~~~~~~~~L~ 449 (1139)
T COG1074 377 EQYPHILIDEFQDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQSI-------YRFRGADIFTFLEAASSEKAFARITLE 449 (1139)
T ss_pred hcCCeEEeeccccCCHHHHHHHHHHHhcCCCCCCceEEecCchHHh-------hhhcCCChHHHHHHhhccccCceeecc
Confidence 48999999999877753 3444444321 24899999999932 2223446677887777 457889999
Q ss_pred cccCCchhhhhcchhhhc
Q 038017 354 MQYRMHPSISFFPNSYFY 371 (610)
Q Consensus 354 ~QYRmhp~I~~f~s~~FY 371 (610)
++||+.|++.+++|..|=
T Consensus 450 ~N~RS~~~vl~avN~lF~ 467 (1139)
T COG1074 450 TNYRSTPELLNAVNALFK 467 (1139)
T ss_pred cccCCcHHHHHHHHHHHh
Confidence 999999999999999885
No 35
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.19 E-value=0.059 Score=63.55 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCCCChhHHHh-hccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCccccccccC
Q 038017 281 EQLKFLVIDEAAQLKESESAI-PLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQYR 357 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~li-pL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QYR 357 (610)
..|++|+|||.--+.....-+ -+.....+++.+|||+.|= +. ...|-....|.++... +...+.|+++||
T Consensus 207 ~~~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs---IY----~fRGA~~~~i~~f~~~~~~~~~~~L~~NyR 279 (715)
T TIGR01075 207 ERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMIVGDDDQS---IY----GWRGAQVENIQKFLKDFPGAETIRLEQNYR 279 (715)
T ss_pred HhCCEEEEEccccCCHHHHHHHHHHhCCCCeEEEEeCCccc---cc----ccCCCCHHHHHHHHHhCCCCeEEECcccCC
Confidence 479999999999888765322 2222234789999999981 11 1112223334343332 234689999999
Q ss_pred CchhhhhcchhhhcC
Q 038017 358 MHPSISFFPNSYFYE 372 (610)
Q Consensus 358 mhp~I~~f~s~~FY~ 372 (610)
+.+.|.++.|..+-.
T Consensus 280 S~~~Il~~an~li~~ 294 (715)
T TIGR01075 280 STANILAAANALIAN 294 (715)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988754
No 36
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.14 E-value=0.05 Score=67.86 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCCcEEEEecCCCCChhH-HHhhccCcC---cceEEEeCCCCcCCcccccccccccccccCHHHHHHhc----C---CCc
Q 038017 281 EQLKFLVIDEAAQLKESE-SAIPLQLPC---IQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL----G---HSK 349 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e-~lipL~~~~---~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~----g---~~~ 349 (610)
..|+.|+|||.--..... .++.+...+ ...+.+|||++|== ..-.|-+.++|.+.... + ...
T Consensus 387 ~rf~~ILVDEfQDTn~lQ~~Il~~L~~~~~~~~nLf~VGD~KQSI-------Y~FRGAdp~lf~~~~~~f~~~~~~~~~~ 459 (1232)
T TIGR02785 387 EKFKEVLVDEYQDTNLLQESILQLLKRGEEDEGNLFMVGDVKQSI-------YRFRQADPSLFLEKYHRFAQEGNEHGKR 459 (1232)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHhccCCCCCeEEEEcCCcchh-------hhhcCCChHHHHHHHHHhhhhccCCceE
Confidence 479999999999888754 344443221 25899999999932 12223345566544321 1 346
Q ss_pred cccccccCCchhhhhcchhhhc
Q 038017 350 HLLSMQYRMHPSISFFPNSYFY 371 (610)
Q Consensus 350 ~~L~~QYRmhp~I~~f~s~~FY 371 (610)
+.|+++||++|.|.++.|..|.
T Consensus 460 i~L~~NfRS~~~Il~~~N~lF~ 481 (1232)
T TIGR02785 460 IDLAENFRSRKEVLDTTNYLFK 481 (1232)
T ss_pred EECCcCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999985
No 37
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.79 E-value=0.055 Score=67.12 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCcEEEEecCCCCChh--HHHhhccCc----------CcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc---
Q 038017 281 EQLKFLVIDEAAQLKES--ESAIPLQLP----------CIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--- 345 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~--e~lipL~~~----------~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--- 345 (610)
..|+.|+|||.--.... +.+-+|... ..+.+.+|||++|== ..-.|-+..+|.++...
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQSI-------Y~FRGAd~~~f~~~~~~~~~ 462 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQSI-------YSFQGADPDRFAEERREFNR 462 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCcccC-------ccccCCCHHHHHHHHHHHHH
Confidence 47999999999888864 455555420 135799999999932 12223345566664331
Q ss_pred -----C--CCccccccccCCchhhhhcchhhhcC
Q 038017 346 -----G--HSKHLLSMQYRMHPSISFFPNSYFYE 372 (610)
Q Consensus 346 -----g--~~~~~L~~QYRmhp~I~~f~s~~FY~ 372 (610)
+ ...+.|+++||++|.|.++.|..|-+
T Consensus 463 ~~~~~~~~~~~~~L~~NyRS~~~Il~~~N~lf~~ 496 (1141)
T TIGR02784 463 KVRAVGAKFEDLSLNYSFRSTPDVLAAVDLVFAD 496 (1141)
T ss_pred hhhhccCCceEeeCCcCCCChHHHHHHHHHHHhC
Confidence 1 24578999999999999999999864
No 38
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=93.69 E-value=0.092 Score=65.16 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=56.3
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCc-CcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccC
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLP-CIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYR 357 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~-~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYR 357 (610)
..|++++|||.--..... .+-.|... ....+++|||++|==--. .|-+...|-.........+.|+++||
T Consensus 376 ~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQsIY~F-------RGAd~~~~l~~~~~~~~~~~L~~NyR 448 (1181)
T PRK10876 376 TRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQAIYAF-------RGADIFTYMKARSEVSAHYTLDTNWR 448 (1181)
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCccccccC-------CCCCchHHHHHHhccCCeeECCCCcC
Confidence 489999999999888754 34444321 124799999999953211 11122222222222234679999999
Q ss_pred CchhhhhcchhhhcC
Q 038017 358 MHPSISFFPNSYFYE 372 (610)
Q Consensus 358 mhp~I~~f~s~~FY~ 372 (610)
+.|.|.++.|..|-.
T Consensus 449 S~~~Iv~~~N~lf~~ 463 (1181)
T PRK10876 449 SAPGMVNSVNKLFSQ 463 (1181)
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999998854
No 39
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.47 E-value=0.097 Score=61.11 Aligned_cols=83 Identities=18% Similarity=0.037 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCcccccccc
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQY 356 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QY 356 (610)
..|+.|+|||.--++... .+-.|.. ....+.+|||+.|=-- ...|-+...|.++... +...+.|.++|
T Consensus 205 ~~~~~ilVDEfQD~~~~Q~~ll~~L~~-~~~~l~~vGD~~QsIY-------~frga~~~~~~~~~~~~~~~~~~~L~~Ny 276 (664)
T TIGR01074 205 NKIRYLLVDEYQDTNTSQYELVKLLVG-DRARFTVVGDDDQSIY-------SWRGARPENLVLLKEDFPQLKVIKLEQNY 276 (664)
T ss_pred HhCCEEEEeehccCCHHHHHHHHHHhc-CCCeEEEEcCCccccc-------CCCCCCHHHHHHHHHhCCCCeEEECCCCC
Confidence 478999999999999765 3333332 2358999999999321 0011122233333322 24457899999
Q ss_pred CCchhhhhcchhhhc
Q 038017 357 RMHPSISFFPNSYFY 371 (610)
Q Consensus 357 Rmhp~I~~f~s~~FY 371 (610)
|++|.|.++.|..|-
T Consensus 277 Rs~~~Il~~~n~l~~ 291 (664)
T TIGR01074 277 RSTGRILKAANILIA 291 (664)
T ss_pred CChHHHHHHHHHHHh
Confidence 999999999998653
No 40
>PRK10536 hypothetical protein; Provisional
Probab=91.93 E-value=0.13 Score=52.90 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=30.6
Q ss_pred CcEEEEecCCCCChhHHHhhccC-cCcceEEEeCCCCcCC
Q 038017 283 LKFLVIDEAAQLKESESAIPLQL-PCIQHAILVGDECQLP 321 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~~-~~~k~~ILvGD~~QLp 321 (610)
-++||||||..++..+.-.-|.. ....++|++||+.|.-
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 38999999999998775555543 2346999999999963
No 41
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.44 E-value=2 Score=50.07 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC--CCcccccccc
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG--HSKHLLSMQY 356 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g--~~~~~L~~QY 356 (610)
..|++|+|||.-...... .+-.|. .....+..|||+.|-== ...|-....+.++.... .+.+.|..+|
T Consensus 212 ~rf~~iLvDE~QDtn~~Q~~ll~~la-~~~~~l~~VGD~dQsIY-------~frGA~~~ni~~f~~df~~~~~i~Le~Ny 283 (655)
T COG0210 212 ARFRYILVDEFQDTNPLQYELLKLLA-GNAANLFVVGDDDQSIY-------GFRGADPENILDFEKDFPAAKVIKLEQNY 283 (655)
T ss_pred hhCCEEEEeCcCCCCHHHHHHHHHHh-CCCCCEEEEcCCccccc-------eeCCCChHHHHHHHhhCCCCcEEEecCCC
Confidence 479999999999988754 222333 23467789999999532 12233444455554443 4789999999
Q ss_pred CCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEE-eCCCeeeecCCccCCHHHHHHHHHHHHHcccc
Q 038017 357 RMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFIN-VFGGREEFIEHSCRNMVEVSVVMKILLNLNLE 435 (610)
Q Consensus 357 Rmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fid-v~~g~e~~~~~S~~N~~EA~~V~~lv~~~~i~ 435 (610)
|+.|.|....|...=.+. ...... .|.. ...|..-..........||..|+..+..+...
T Consensus 284 RSt~~Il~~An~~i~~n~-----~r~~k~--------------l~~~~~~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~ 344 (655)
T COG0210 284 RSTPNILAAANKVIANNK-----KRQAKT--------------LRTEVEGSGEKVVLLLANDEEDEARWIASEIDALIEI 344 (655)
T ss_pred CCcHHHHHHHHHHHhcCC-----ccCCCc--------------ceeccCCCCCCceEEeCCChHHHHHHHHHHHHHHHHc
Confidence 999999999997753111 111111 1111 11111111223345688999999988885444
Q ss_pred CCCcccccc
Q 038017 436 VPKTWAVTS 444 (610)
Q Consensus 436 v~tpy~~qv 444 (610)
...+|....
T Consensus 345 ~~~~~~d~a 353 (655)
T COG0210 345 GKVNYSDIA 353 (655)
T ss_pred CCCChhhEE
Confidence 434444333
No 42
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=84.83 E-value=2.2 Score=37.47 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=37.1
Q ss_pred ceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQ 604 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk~ 604 (610)
..++.|+.|+|||+.++.-+...... .. .-+-++++.+..|+++.+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~--------~~-------------------------~~~~lv~~p~~~l~~~~~~ 48 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS--------LK-------------------------GGQVLVLAPTRELANQVAE 48 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc--------cc-------------------------CCCEEEEcCcHHHHHHHHH
Confidence 46789999999999888877653221 00 1355999999999999887
Q ss_pred Hhhh
Q 038017 605 HISH 608 (610)
Q Consensus 605 ~~~~ 608 (610)
.+.+
T Consensus 49 ~~~~ 52 (144)
T cd00046 49 RLKE 52 (144)
T ss_pred HHHH
Confidence 6643
No 43
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=84.60 E-value=0.53 Score=55.35 Aligned_cols=45 Identities=36% Similarity=0.405 Sum_probs=34.5
Q ss_pred CcEEEEecCCCCChhHHHhhcc-CcCcceEEEeCCCCcCCcccccc
Q 038017 283 LKFLVIDEAAQLKESESAIPLQ-LPCIQHAILVGDECQLPAMVESS 327 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~-~~~~k~~ILvGD~~QLpP~v~s~ 327 (610)
.|.+||||++++.......... .....++|++||+.||||+....
T Consensus 408 ~d~~iiDe~~ml~~~~~~~l~~~i~~~a~~i~vGD~~ql~~v~~g~ 453 (696)
T COG0507 408 GDLLIIDEASMLDTSLAFGLLSAIGKLAKVILVGDVDQLPSVGAGA 453 (696)
T ss_pred cceeEEehhhhHHHHHhhhhhcccccCCeEEEeCCHHhcCCCCCCc
Confidence 4899999999999854444322 23568999999999999986554
No 44
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=83.76 E-value=1.2 Score=44.42 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred HHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcC-cceEEEeCCCCcCC
Q 038017 256 DFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPC-IQHAILVGDECQLP 321 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~-~k~~ILvGD~~QLp 321 (610)
+.++.+-.|-+...+..... .+ .-.+||||||-.++..+.-.-|...+ ..++|+.||+.|--
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGr-t~---~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGR-TF---DNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQID 159 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT---B----SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE------
T ss_pred HHHhhcCeEEEEehhhhcCc-cc---cceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceeec
Confidence 44667778888766543321 12 23899999999999887766666433 46999999999974
No 45
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=83.49 E-value=1.3 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=28.7
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|+++|.. ..+++|+|.+|||||++++.|..
T Consensus 2 Ln~~Q~~av~~~~~~~~V~Ag~GSGKT~~L~~ri~ 36 (664)
T TIGR01074 2 LNPQQQEAVEYVTGPCLVLAGAGSGKTRVITNKIA 36 (664)
T ss_pred CCHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHH
Confidence 57778777765 56799999999999999999885
No 46
>PF13245 AAA_19: Part of AAA domain
Probab=83.40 E-value=3.1 Score=34.55 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=33.6
Q ss_pred eEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQH 605 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk~~ 605 (610)
++|.|..|||||+..+-+...--.. ++.. + =+-+++|.+...+.++++.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~----~~~~-~--------------------------~~vlv~a~t~~aa~~l~~r 61 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAA----RADP-G--------------------------KRVLVLAPTRAAADELRER 61 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH----hcCC-C--------------------------CeEEEECCCHHHHHHHHHH
Confidence 4459999999998887776532100 0000 0 1338999999999999876
Q ss_pred h
Q 038017 606 I 606 (610)
Q Consensus 606 ~ 606 (610)
+
T Consensus 62 l 62 (76)
T PF13245_consen 62 L 62 (76)
T ss_pred H
Confidence 5
No 47
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=82.38 E-value=1.4 Score=52.13 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.8
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|+.+|.. ..+++|+|..|||||++++.|.-
T Consensus 5 Ln~~Q~~av~~~~g~~lV~AgaGSGKT~~l~~ria 39 (726)
T TIGR01073 5 LNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIA 39 (726)
T ss_pred cCHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 67888887765 45789999999999999999974
No 48
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=81.42 E-value=1.7 Score=51.34 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=28.8
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|+++|.. ..++.|++-.|||||++++.|..
T Consensus 5 Ln~~Q~~av~~~~g~~lV~AgaGSGKT~~L~~Ria 39 (715)
T TIGR01075 5 LNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIA 39 (715)
T ss_pred cCHHHHHHHcCCCCCEEEEecCCCCHHHHHHHHHH
Confidence 67888887776 45789999999999999998884
No 49
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=80.93 E-value=1.7 Score=51.39 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=29.0
Q ss_pred eChhhceEEEcC-CceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILFP-RSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~~-~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|++.|... .++.|++-.|||||++++.|+.
T Consensus 10 Ln~~Q~~av~~~~g~~lV~AgaGSGKT~vl~~Ria 44 (721)
T PRK11773 10 LNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIA 44 (721)
T ss_pred cCHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHH
Confidence 788888877764 5788999999999999999885
No 50
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.85 E-value=2.7 Score=46.24 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=44.1
Q ss_pred EEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHH
Q 038017 520 ILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLC 599 (610)
Q Consensus 520 I~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~ 599 (610)
+.-+.++++.+++|||||.+.++-++..-... ... .+ .+....+-|+++...-||
T Consensus 42 il~g~dvi~~ApTGsGKTla~llp~l~~l~~~-----~~~---~~-----------------~~~~~~~~lil~PtreLa 96 (423)
T PRK04837 42 TLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH-----PAP---ED-----------------RKVNQPRALIMAPTRELA 96 (423)
T ss_pred HhCCCcEEEECCCCchHHHHHHHHHHHHHHhc-----ccc---cc-----------------cccCCceEEEECCcHHHH
Confidence 33477899999999999999988877542211 000 00 001125679999999999
Q ss_pred HHHHHHhhhc
Q 038017 600 FAVKQHISHM 609 (610)
Q Consensus 600 ~~vk~~~~~l 609 (610)
.|+.+.+..+
T Consensus 97 ~Qi~~~~~~l 106 (423)
T PRK04837 97 VQIHADAEPL 106 (423)
T ss_pred HHHHHHHHHH
Confidence 9998776543
No 51
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.77 E-value=0.8 Score=47.30 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCCCChhHHHhh--ccCcCcceEEEeCCCCcC
Q 038017 281 EQLKFLVIDEAAQLKESESAIP--LQLPCIQHAILVGDECQL 320 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lip--L~~~~~k~~ILvGD~~QL 320 (610)
..|+.|+||||--.++...-+- |. ....++++|||++|=
T Consensus 255 ~~~~~i~IDE~QD~s~~Q~~il~~l~-~~~~~~~~vGD~~Qs 295 (315)
T PF00580_consen 255 QRYDHILIDEFQDTSPLQLRILKKLF-KNPENLFIVGDPNQS 295 (315)
T ss_dssp HHSSEEEESSGGG-BHHHHHHHHHHH-TTTTTEEEEE-GGG-
T ss_pred hhCCeEEeEccccCCHHHHHHHHHHH-HhhceeEEeCCCCcc
Confidence 3789999999999998764332 33 233479999999994
No 52
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=79.66 E-value=2.6 Score=46.46 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=41.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.+++|+|||.++++-+++.-..+ ... + ....+-|+++...-||.|+
T Consensus 38 g~d~l~~apTGsGKT~~~~lp~l~~l~~~------~~~--~--------------------~~~~~~lil~Pt~eLa~Q~ 89 (434)
T PRK11192 38 GRDVLGSAPTGTGKTAAFLLPALQHLLDF------PRR--K--------------------SGPPRILILTPTRELAMQV 89 (434)
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHhhc------ccc--C--------------------CCCceEEEECCcHHHHHHH
Confidence 56789999999999999988877532111 000 0 0015679999999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+..+
T Consensus 90 ~~~~~~l 96 (434)
T PRK11192 90 ADQAREL 96 (434)
T ss_pred HHHHHHH
Confidence 8776543
No 53
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=78.47 E-value=2.3 Score=49.87 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=28.4
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|+++|.. .+++.|++-.|||||++++.|.-
T Consensus 3 Ln~~Q~~av~~~~g~~lV~AgpGSGKT~vL~~Ria 37 (672)
T PRK10919 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIA 37 (672)
T ss_pred CCHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHH
Confidence 67778777766 56788999999999999999884
No 54
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=77.92 E-value=3.9 Score=45.50 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=40.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.+++|||||.+.++-+++.-. ... ...+-++++...-||.|+
T Consensus 41 g~dvi~~a~TGsGKT~a~~lpil~~l~-----~~~---------------------------~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 41 GKDVIAQAKTGSGKTAAFGLGLLQKLD-----VKR---------------------------FRVQALVLCPTRELADQV 88 (460)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHhh-----hcc---------------------------CCceEEEEeCCHHHHHHH
Confidence 678999999999999998888775311 000 013458999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 89 ~~~~~~ 94 (460)
T PRK11776 89 AKEIRR 94 (460)
T ss_pred HHHHHH
Confidence 887654
No 55
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=77.59 E-value=4.6 Score=45.89 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=47.1
Q ss_pred eChhhceE---EEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEM---ILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~v---I~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.|+-|... +.-++++++.+++|+|||.+.++-++..-...+. . ..+ ...-.+
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~-----~-----~~~---------------~~~~~~ 198 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRS-----G-----HPS---------------EQRNPL 198 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcc-----c-----ccc---------------ccCCce
Confidence 34444443 3347889999999999999998888753211100 0 000 001156
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-|+++...-||.||.+.+..+
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l 219 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVL 219 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHH
Confidence 799999999999988776543
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=77.49 E-value=1.7 Score=50.91 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=46.3
Q ss_pred ceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 509 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 509 nfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
+|.+++-|.+++.. ++++++.++.|+|||.+..+-+++.... +
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~------------------------- 65 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------G------------------------- 65 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------C-------------------------
Confidence 35566666665443 6789999999999999988777643210 0
Q ss_pred ceeEEEEecCHHHHHHHHHHhhh
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-|||+...-||+|+-+.+.+
T Consensus 66 -~k~v~i~P~raLa~q~~~~~~~ 87 (674)
T PRK01172 66 -LKSIYIVPLRSLAMEKYEELSR 87 (674)
T ss_pred -CcEEEEechHHHHHHHHHHHHH
Confidence 2348999999999988777654
No 57
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=77.44 E-value=4.2 Score=45.33 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=42.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.+++|||||.+.++-+++.-... ... . + ...-++-|+++....||.|+
T Consensus 38 g~dvlv~apTGsGKTla~~lpil~~l~~~-----~~~-~-~-------------------~~~~~~aLil~PtreLa~Qi 91 (456)
T PRK10590 38 GRDLMASAQTGTGKTAGFTLPLLQHLITR-----QPH-A-K-------------------GRRPVRALILTPTRELAAQI 91 (456)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHhhhc-----ccc-c-c-------------------cCCCceEEEEeCcHHHHHHH
Confidence 67899999999999999988887542110 000 0 0 01126779999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 92 ~~~~~~ 97 (456)
T PRK10590 92 GENVRD 97 (456)
T ss_pred HHHHHH
Confidence 887654
No 58
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=77.26 E-value=1.6 Score=44.94 Aligned_cols=20 Identities=45% Similarity=0.808 Sum_probs=16.1
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.++|+||+|||| ++||.++
T Consensus 30 ~vliGpSGsGKTT--tLkMINr 49 (309)
T COG1125 30 LVLIGPSGSGKTT--TLKMINR 49 (309)
T ss_pred EEEECCCCCcHHH--HHHHHhc
Confidence 6679999999999 5677654
No 59
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.09 E-value=4.2 Score=45.51 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=42.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
|+++++.+++|||||.+.++-++..-... .. ... . .....+-||+....-|++++
T Consensus 124 G~dvi~~apTGSGKTlay~lpil~~l~~~------~~----~~~------~---------~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 124 GHDAIGRAQTGTGKTAAFLISIINQLLQT------PP----PKE------R---------YMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhc------Cc----ccc------c---------ccCCceEEEEeCcHHHHHHH
Confidence 77889999999999999988877532100 00 000 0 00015679999999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+..|
T Consensus 179 ~~~~~~l 185 (475)
T PRK01297 179 AKDAAAL 185 (475)
T ss_pred HHHHHHh
Confidence 9877654
No 60
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.06 E-value=1.4 Score=38.53 Aligned_cols=17 Identities=41% Similarity=0.730 Sum_probs=14.6
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
...+++|++||||||.+
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45789999999999866
No 61
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=76.76 E-value=5.8 Score=36.89 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.+.++.|+.|+|||++...-+++.... + . . -+-+++.....|+.++
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l~~~~~------~-~---~-----------------------~~~lii~P~~~l~~q~ 60 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPALNRLQE------G-K---D-----------------------ARVLIIVPTRALAEQQ 60 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT------T-S---S-----------------------SEEEEEESSHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHHHHhhhcc------C-C---C-----------------------ceEEEEeecccccccc
Confidence 4567899999999999998887753221 0 0 0 1347788888888887
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 61 ~~~~~~ 66 (169)
T PF00270_consen 61 FERLRK 66 (169)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 766644
No 62
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=75.00 E-value=2.3 Score=48.98 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=43.5
Q ss_pred EEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHH
Q 038017 520 ILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLC 599 (610)
Q Consensus 520 I~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~ 599 (610)
+.-+.++++.+++|||||.++++-+++.-... ..... .+....+-|+++.+.-||
T Consensus 43 ~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~----~~~~~---------------------~~~~~~raLIl~PTreLa 97 (572)
T PRK04537 43 ALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSR----PALAD---------------------RKPEDPRALILAPTRELA 97 (572)
T ss_pred HhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhc----ccccc---------------------cccCCceEEEEeCcHHHH
Confidence 33477899999999999999988887532100 00000 001125779999999999
Q ss_pred HHHHHHhhh
Q 038017 600 FAVKQHISH 608 (610)
Q Consensus 600 ~~vk~~~~~ 608 (610)
.|+.+.+.+
T Consensus 98 ~Qi~~~~~~ 106 (572)
T PRK04537 98 IQIHKDAVK 106 (572)
T ss_pred HHHHHHHHH
Confidence 999887654
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=74.73 E-value=2.7 Score=48.90 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=47.5
Q ss_pred cceeeChhhceEEEc---------CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF---------PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~---------~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
+||.+|+.|...|-- +.+.++.|+.|+|||.++++-++..-. ++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------------~g-------------- 284 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------------AG-------------- 284 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------cC--------------
Confidence 788899988776542 124689999999999988776664210 00
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-++++..-.||.|+.+.+.+
T Consensus 285 --------~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 285 --------YQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred --------CcEEEECCHHHHHHHHHHHHHH
Confidence 2348888888999888776654
No 64
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.21 E-value=6 Score=36.99 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=36.4
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
...++.|..|||||+++..-++..-... . .-+-++++.+..++.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~-----~----------------------------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRG-----K----------------------------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhccc-----C----------------------------CCcEEEEeCCHHHHHHHH
Confidence 4688999999999998777766431110 0 023488899888888887
Q ss_pred HHhhh
Q 038017 604 QHISH 608 (610)
Q Consensus 604 ~~~~~ 608 (610)
+.+.+
T Consensus 72 ~~~~~ 76 (201)
T smart00487 72 EELKK 76 (201)
T ss_pred HHHHH
Confidence 77654
No 65
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=74.00 E-value=2 Score=42.57 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.9
Q ss_pred cCCceEEEccCCCCchh
Q 038017 522 FPRSTFILGRSGTGKTT 538 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt 538 (610)
.++.+.++|+||+||||
T Consensus 30 ~ge~vv~lGpSGcGKTT 46 (259)
T COG4525 30 SGELVVVLGPSGCGKTT 46 (259)
T ss_pred CCCEEEEEcCCCccHHH
Confidence 46678899999999998
No 66
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=73.74 E-value=7.9 Score=37.48 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=39.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+++.++.+++|+|||.+.+.-++......+ . ....+-++|+...-|++++
T Consensus 36 ~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~------------------------~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 36 GRDVIGQAQTGSGKTAAFLIPILEKLDPSP------K------------------------KDGPQALILAPTRELALQI 85 (203)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHhhc------c------------------------cCCceEEEEcCCHHHHHHH
Confidence 667899999999999987777665322110 0 0015669999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 86 ~~~~~~ 91 (203)
T cd00268 86 AEVARK 91 (203)
T ss_pred HHHHHH
Confidence 876654
No 67
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=73.06 E-value=3.7 Score=48.28 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=49.6
Q ss_pred cceeeChhhceEEEc---------CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF---------PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~---------~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
++|.+|+.|...|-- +.+.++.|+.|+|||.+++.-++..-. +|
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-------------~g-------------- 310 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-------------AG-------------- 310 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------cC--------------
Confidence 789999998887642 125799999999999998887764310 00
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-+|++....||.|+.+.+.+
T Consensus 311 --------~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 311 --------YQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred --------CeEEEEeccHHHHHHHHHHHHH
Confidence 2459999999999998777654
No 68
>PRK11054 helD DNA helicase IV; Provisional
Probab=72.80 E-value=4.1 Score=47.89 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.8
Q ss_pred eeeChhhceEEEc-CCceEEEccCCCCchhHHHHHH
Q 038017 510 FEVTDEQLEMILF-PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 510 favTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl 544 (610)
..++++++..|.. .++..|+|-.|||||++++.|.
T Consensus 195 ~~L~~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ 230 (684)
T PRK11054 195 SPLNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARA 230 (684)
T ss_pred CCCCHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHH
Confidence 4578888776665 4578899999999999999887
No 69
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=71.84 E-value=5.2 Score=45.70 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=30.5
Q ss_pred eChhhceEEEcCC--ceEEEccCCCCchhHHHHHHHHHhHhh
Q 038017 512 VTDEQLEMILFPR--STFILGRSGTGKTTILTMKLFQNEKHH 551 (610)
Q Consensus 512 vTr~e~~vI~~~~--s~~vlGrSgtgktt~~~~kl~~~e~~~ 551 (610)
++++|-++|.+.. .++|-|-.|+||||.+|.|+- +.+|
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvA--yLlY 252 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVA--YLLY 252 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHH--HHHh
Confidence 5677788988854 467889999999999999983 5555
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=71.69 E-value=3.4 Score=40.83 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=22.5
Q ss_pred cceeeChhhceEEEcCCceEEEccCCCCchhHHHHHHHHHh
Q 038017 508 LPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 508 lnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
++|.+.+-|. .|+.|+||+||+| ++||+-.+
T Consensus 21 vs~~i~~Gef--------~fl~GpSGAGKST--llkLi~~~ 51 (223)
T COG2884 21 VSFHIPKGEF--------VFLTGPSGAGKST--LLKLIYGE 51 (223)
T ss_pred ceEeecCceE--------EEEECCCCCCHHH--HHHHHHhh
Confidence 5666555443 7899999999998 66776443
No 71
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=71.65 E-value=3 Score=40.64 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc-------CCCcccccc
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL-------GHSKHLLSM 354 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~-------g~~~~~L~~ 354 (610)
..|+|||||||.++.+-..--+. +..++|+. +......|-++.+--|+... +...+.|++
T Consensus 90 ~~DlliVDEAAaIp~p~L~~ll~--~~~~vv~s-----------tTi~GYEGtGRgF~lkf~~~L~~~~~~~~~~~~L~~ 156 (177)
T PF05127_consen 90 QADLLIVDEAAAIPLPLLKQLLR--RFPRVVFS-----------TTIHGYEGTGRGFSLKFLKQLKKHRPRNWRELELSE 156 (177)
T ss_dssp --SCEEECTGGGS-HHHHHHHHC--CSSEEEEE-----------EEBSSTTBB-HHHHHHHHCT----ST-TEEEEE--S
T ss_pred CCCEEEEechhcCCHHHHHHHHh--hCCEEEEE-----------eeccccccCCceeeeehhhhccccCCCccEEEEcCC
Confidence 46999999999999765333332 45788873 22233344455543333332 345566777
Q ss_pred ccCCch--hhhhcchhhh
Q 038017 355 QYRMHP--SISFFPNSYF 370 (610)
Q Consensus 355 QYRmhp--~I~~f~s~~F 370 (610)
=-|-.+ .+-.|.+..|
T Consensus 157 PIR~~~~DPlE~wl~~~l 174 (177)
T PF05127_consen 157 PIRYAPGDPLEAWLNDLL 174 (177)
T ss_dssp -SSS-TT-HHHHHHHHHC
T ss_pred CccCCCcCcHHHHHHHhh
Confidence 666533 3555555443
No 72
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=71.43 E-value=3.2 Score=42.47 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=16.5
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-+.++|+||+||+| ++|+..
T Consensus 30 EfvsilGpSGcGKST--LLriiA 50 (248)
T COG1116 30 EFVAILGPSGCGKST--LLRLIA 50 (248)
T ss_pred CEEEEECCCCCCHHH--HHHHHh
Confidence 337789999999998 666654
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=70.79 E-value=2.5 Score=45.51 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=16.2
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-+.++|+||+|||| ++||++
T Consensus 33 f~~lLGPSGcGKTT--lLR~IA 52 (352)
T COG3842 33 FVTLLGPSGCGKTT--LLRMIA 52 (352)
T ss_pred EEEEECCCCCCHHH--HHHHHh
Confidence 36689999999999 567765
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=70.61 E-value=2.4 Score=37.46 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=15.5
Q ss_pred eEEEccCCCCchhHHHHHHHHHh
Q 038017 526 TFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~e 548 (610)
.+|.|.||+||||. .+.++..
T Consensus 2 I~I~G~~gsGKST~--a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTL--AKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHH--HHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHH
Confidence 46899999999984 4555443
No 75
>PTZ00424 helicase 45; Provisional
Probab=70.49 E-value=6.7 Score=42.50 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=38.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-. . + . ...+-||+.....||.|+
T Consensus 65 ~~d~ii~apTGsGKT~~~~l~~l~~~~-----------~-~-~-------------------~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 65 GYDTIGQAQSGTGKTATFVIAALQLID-----------Y-D-L-------------------NACQALILAPTRELAQQI 112 (401)
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHhc-----------C-C-C-------------------CCceEEEECCCHHHHHHH
Confidence 667889999999999988877664210 0 0 0 003569999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+..
T Consensus 113 ~~~~~~ 118 (401)
T PTZ00424 113 QKVVLA 118 (401)
T ss_pred HHHHHH
Confidence 876543
No 76
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=69.25 E-value=7.7 Score=44.55 Aligned_cols=88 Identities=14% Similarity=0.276 Sum_probs=54.3
Q ss_pred CeEEEEcccccchhcccccCCCcEEEEecCCCCChh--HHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHH
Q 038017 262 ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKES--ESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLF 339 (610)
Q Consensus 262 a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~--e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLF 339 (610)
+.++++||.... ......|++|+||||.-+... .+++|+......++|.|--++ ...-..|+.
T Consensus 282 st~~fasc~n~N---siRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~N------------sg~~sTSfL 346 (668)
T PHA03372 282 STALFASCYNTN---SIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTN------------TTNDATCFL 346 (668)
T ss_pred ceeeehhhccCc---cccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCC------------CCCccchHH
Confidence 345555554433 345568999999999999864 467777665667888774221 011123544
Q ss_pred HHHHhcCCCccccc-cccCCchhhhhcc
Q 038017 340 ERLSYLGHSKHLLS-MQYRMHPSISFFP 366 (610)
Q Consensus 340 eRL~~~g~~~~~L~-~QYRmhp~I~~f~ 366 (610)
-+| .+.+..+|+ ++|.|....-.|.
T Consensus 347 ~~L--k~~~~~~lnVVsYvC~~H~~~f~ 372 (668)
T PHA03372 347 TKL--NNSPFDMLNVVSYVCEEHLHSFN 372 (668)
T ss_pred Hhc--cCchhhheeeEEEEchhhhhhhh
Confidence 454 234566888 7888866655553
No 77
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=67.91 E-value=3.3 Score=36.65 Aligned_cols=17 Identities=47% Similarity=0.931 Sum_probs=14.0
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+..+++.|++|+|||+.
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34588999999999973
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=67.66 E-value=2.9 Score=37.31 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=12.6
Q ss_pred CceEEEccCCCCchhHHH
Q 038017 524 RSTFILGRSGTGKTTILT 541 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~ 541 (610)
+..++.|.+|+|||+.+-
T Consensus 5 ~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIK 22 (131)
T ss_dssp --EEEEE-TTSSHHHHHH
T ss_pred cccEEEcCCCCCHHHHHH
Confidence 357899999999998543
No 79
>PTZ00110 helicase; Provisional
Probab=67.52 E-value=8.5 Score=44.06 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred EEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHH
Q 038017 520 ILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLC 599 (610)
Q Consensus 520 I~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~ 599 (610)
+.-++++++++++|+|||.+.++-++.. +....... ......-|+++...-||
T Consensus 164 ~l~G~dvI~~ApTGSGKTlaylLP~l~~-----i~~~~~~~----------------------~~~gp~~LIL~PTreLa 216 (545)
T PTZ00110 164 ALSGRDMIGIAETGSGKTLAFLLPAIVH-----INAQPLLR----------------------YGDGPIVLVLAPTRELA 216 (545)
T ss_pred HhcCCCEEEEeCCCChHHHHHHHHHHHH-----HHhccccc----------------------CCCCcEEEEECChHHHH
Confidence 3447889999999999999988777642 11000000 00114569999999999
Q ss_pred HHHHHHhhhc
Q 038017 600 FAVKQHISHM 609 (610)
Q Consensus 600 ~~vk~~~~~l 609 (610)
+||.+.+.++
T Consensus 217 ~Qi~~~~~~~ 226 (545)
T PTZ00110 217 EQIREQCNKF 226 (545)
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 80
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=65.97 E-value=4.4 Score=43.47 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-+.++|+||+|||| ++||.+
T Consensus 31 f~vllGPSGcGKST--lLr~IA 50 (338)
T COG3839 31 FVVLLGPSGCGKST--LLRMIA 50 (338)
T ss_pred EEEEECCCCCCHHH--HHHHHh
Confidence 36789999999998 566654
No 81
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=65.88 E-value=13 Score=40.34 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=32.9
Q ss_pred CcEEEEecCCCCChhHHHhhccCc-CcceEEEeCCCCcC-Cccc
Q 038017 283 LKFLVIDEAAQLKESESAIPLQLP-CIQHAILVGDECQL-PAMV 324 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~~~-~~k~~ILvGD~~QL-pP~v 324 (610)
=.++|||||--++..+...-+... ...++|+.||+-|. .|.+
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~G~GsKIVl~gd~aQiD~~yl 395 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRAGEGSKIVLTGDPAQIDTPYL 395 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhccCCCEEEEcCCHHHcCCccc
Confidence 378999999999988766666542 35799999999999 4544
No 82
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=65.87 E-value=3.6 Score=39.81 Aligned_cols=21 Identities=24% Similarity=0.650 Sum_probs=15.9
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+..++++|+||+||||. .|++
T Consensus 2 g~~i~l~G~sGsGKsTl--~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL--LAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHH--HHHH
Confidence 34578999999999984 4444
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.72 E-value=3.8 Score=36.34 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=11.9
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+++.|++|||||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 36899999999973
No 84
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=64.64 E-value=9.5 Score=41.41 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=44.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++.++.+...|+|||-.+.+-++++=|.- .+ -...+-+|...-|++||
T Consensus 98 g~dvIglAeTGSGKT~afaLPIl~~LL~~-------------p~-------------------~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 98 GRDVIGLAETGSGKTGAFALPILQRLLQE-------------PK-------------------LFFALVLTPTRELAQQI 145 (476)
T ss_pred CCcEEEEeccCCCchhhhHHHHHHHHHcC-------------CC-------------------CceEEEecCcHHHHHHH
Confidence 77899999999999999999888753320 00 05668899999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
...|+.|
T Consensus 146 ~e~fe~L 152 (476)
T KOG0330|consen 146 AEQFEAL 152 (476)
T ss_pred HHHHHHh
Confidence 9999875
No 85
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=64.08 E-value=13 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
...++.+..|+|||.+++.-.... + . +-+|++.+..|+.+.+
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l---~---~--------------------------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILEL---A---R--------------------------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---H---C--------------------------------EEEEEESSHHHHHHHH
T ss_pred CCEEEEECCCCCcChhhhhhhhcc---c---c--------------------------------ceeEecCHHHHHHHHH
Confidence 346788999999998887422211 1 0 2389999999999988
Q ss_pred HHh
Q 038017 604 QHI 606 (610)
Q Consensus 604 ~~~ 606 (610)
..+
T Consensus 68 ~~~ 70 (184)
T PF04851_consen 68 DEF 70 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 86
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=63.81 E-value=4.9 Score=35.85 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.1
Q ss_pred ceEEEccCCCCchhHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl 544 (610)
-+.++|+||+||||.+.+-+
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 46789999999999766643
No 87
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=62.61 E-value=8.6 Score=46.85 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=47.5
Q ss_pred cceeeChhhceEEEc---------CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF---------PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~---------~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
++|..|+.|...|.- +.+.+++|+.|+|||.+++.-++..- . ++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al----------~---~g-------------- 500 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV----------L---DG-------------- 500 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH----------H---hC--------------
Confidence 677788888775542 24689999999999998776665421 0 00
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-++++....||+|+-+.+.+
T Consensus 501 --------~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 501 --------KQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred --------CeEEEEeCcHHHHHHHHHHHHH
Confidence 2348999999999998777654
No 88
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=62.33 E-value=5.1 Score=40.35 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=16.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.+||+||+||+| ++|-++
T Consensus 28 Gevv~iiGpSGSGKST--lLRclN 49 (240)
T COG1126 28 GEVVVIIGPSGSGKST--LLRCLN 49 (240)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 3446789999999998 445443
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=62.09 E-value=4.5 Score=41.48 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=13.8
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
++++.|++||||||.+
T Consensus 44 ~vll~GppGtGKTtlA 59 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVA 59 (261)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5788999999999855
No 90
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=61.97 E-value=5.3 Score=32.03 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=15.7
Q ss_pred ceEEEccCCCCchhHHHHH
Q 038017 525 STFILGRSGTGKTTILTMK 543 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~k 543 (610)
.+.+.|++|+||+|.+-.-
T Consensus 25 ~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999976443
No 91
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=61.88 E-value=6 Score=40.42 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=17.8
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
...|+|+||+||||-++.-|..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999977666643
No 92
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=60.61 E-value=4.9 Score=35.44 Aligned_cols=15 Identities=53% Similarity=0.587 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++|.|.+|+||||.+
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 368899999999965
No 93
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=60.51 E-value=6.9 Score=50.49 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.5
Q ss_pred CcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCC
Q 038017 283 LKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLP 321 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLp 321 (610)
=+++|||||+++.--+..--|. ....-|+||+||.+|+.
T Consensus 501 ~~ilIVDEAg~lsar~m~~Ll~~A~~~~arvVllgd~~Q~a 541 (1747)
T PRK13709 501 GSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTG 541 (1747)
T ss_pred CcEEEEECCCcCCHHHHHHHHHHHHHhCCEEEEECCccccc
Confidence 3699999999999766444433 22346999999999984
No 94
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=60.19 E-value=9 Score=38.19 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+++.|+.|||||+.++..-+
T Consensus 22 v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp EEEE--TTSSTTHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67899999999987776554
No 95
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=59.52 E-value=6.5 Score=39.58 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=16.1
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.++|+||+||.| ++|.+++
T Consensus 36 TAlIGPSGcGKST--~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKST--LLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHH--HHHHHHh
Confidence 6789999999998 5666653
No 96
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.38 E-value=12 Score=40.33 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=44.6
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHH
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFA 601 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~ 601 (610)
=|++++.+...|+|||+.+-+-+|++|-.. |+| .=.+|+|.-+-|+-+
T Consensus 43 eGrdcig~AkTGsGKT~AFaLPil~rLsed--------------------------P~g------iFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 43 EGRDCIGCAKTGSGKTAAFALPILNRLSED--------------------------PYG------IFALVLTPTRELALQ 90 (442)
T ss_pred cccccccccccCCCcchhhhHHHHHhhccC--------------------------CCc------ceEEEecchHHHHHH
Confidence 378899999999999999999999875421 122 445899999999999
Q ss_pred HHHHhhhc
Q 038017 602 VKQHISHM 609 (610)
Q Consensus 602 vk~~~~~l 609 (610)
+..+|--|
T Consensus 91 iaEQF~al 98 (442)
T KOG0340|consen 91 IAEQFIAL 98 (442)
T ss_pred HHHHHHHh
Confidence 99988644
No 97
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=58.99 E-value=10 Score=33.08 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHhcCCeEEEEcccccchhcc---cccCCCcEEEEecCCCCChhH
Q 038017 257 FCFTKASLIFCTASSSYKLHS---VAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l~~---~~~~~fD~vIIDEAsQ~~E~e 298 (610)
.......|+++|.....+... .....++++|||||-.+....
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 119 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG 119 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc
Confidence 346789999999876544221 123478999999998887665
No 98
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=58.67 E-value=9 Score=36.25 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEcCCceEEEccCCCCchhHHHH
Q 038017 519 MILFPRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 519 vI~~~~s~~vlGrSgtgktt~~~~ 542 (610)
+.+.+..+++.|+||.||+|.++.
T Consensus 10 v~~~g~gvLi~G~sG~GKStlal~ 33 (149)
T cd01918 10 VEVGGIGVLITGPSGIGKSELALE 33 (149)
T ss_pred EEECCEEEEEEcCCCCCHHHHHHH
Confidence 444577899999999999998853
No 99
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=58.67 E-value=7.5 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=17.0
Q ss_pred CceEEEccCCCCchhHHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
.-+.++|+||.||+| |+|.++.
T Consensus 31 E~VaiIG~SGaGKST--LLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKST--LLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHH--HHHHHhc
Confidence 347789999999998 6666653
No 100
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=58.52 E-value=5.8 Score=40.15 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=13.8
Q ss_pred CCceEEEccCCCCchh
Q 038017 523 PRSTFILGRSGTGKTT 538 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt 538 (610)
|.-+.|+|+||+||||
T Consensus 31 Ge~vaI~GpSGSGKST 46 (226)
T COG1136 31 GEFVAIVGPSGSGKST 46 (226)
T ss_pred CCEEEEECCCCCCHHH
Confidence 4457899999999998
No 101
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.32 E-value=5.7 Score=38.76 Aligned_cols=17 Identities=59% Similarity=0.775 Sum_probs=13.4
Q ss_pred eEEEccCCCCchhHHHH
Q 038017 526 TFILGRSGTGKTTILTM 542 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~ 542 (610)
++|-|+.|||||+....
T Consensus 20 ~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp EEEE-STTSSHHHHHHH
T ss_pred EEEECCCCCChHHHHHH
Confidence 78899999999976554
No 102
>PRK08118 topology modulation protein; Reviewed
Probab=58.06 E-value=5.9 Score=37.89 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=15.5
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++|+|.+|+|||| +.+.+.+
T Consensus 4 I~I~G~~GsGKST--lak~L~~ 23 (167)
T PRK08118 4 IILIGSGGSGKST--LARQLGE 23 (167)
T ss_pred EEEECCCCCCHHH--HHHHHHH
Confidence 6789999999998 4555544
No 103
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.50 E-value=5.4 Score=37.71 Aligned_cols=18 Identities=44% Similarity=0.842 Sum_probs=11.7
Q ss_pred CceEEEccCCCCchhHHH
Q 038017 524 RSTFILGRSGTGKTTILT 541 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~ 541 (610)
..+++.|.+|+|||+.+-
T Consensus 25 ~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp --EEE-B-TTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 104
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=57.32 E-value=6 Score=35.91 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||-+
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 478999999999853
No 105
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=56.57 E-value=7.3 Score=42.33 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=13.7
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.+.+++|++|||||...
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 35788899999998644
No 106
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=56.46 E-value=23 Score=39.22 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccchhHHHHHHhcCCeEEEEcccccchhcc----cccCCCcEEEEecCCCC
Q 038017 223 HESRSKCHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHS----VAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 223 ~~~r~~~~~~l~~l~~~l~~l~l~~~~~~~~i~~~il~~a~VI~~T~sss~~l~~----~~~~~fD~vIIDEAsQ~ 294 (610)
++..+...+........++.+.+...+.....+..++...+||++|++-.-.+.. .......++|||||--+
T Consensus 107 qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 107 QQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhh
Confidence 3344444444444555667777777777777778899999999999876433211 22346789999999654
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=56.17 E-value=6.9 Score=38.65 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
+.++++.|.+|||||+.+-.
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45688999999999986643
No 108
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=56.08 E-value=6.1 Score=35.92 Aligned_cols=15 Identities=47% Similarity=0.849 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|++|||||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 109
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=55.37 E-value=6.8 Score=34.42 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=13.4
Q ss_pred eEEEccCCCCchhHHHH
Q 038017 526 TFILGRSGTGKTTILTM 542 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~ 542 (610)
+++.|++|+|||+.+-.
T Consensus 1 I~i~G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE 17 (107)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 46899999999985433
No 110
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=55.31 E-value=3.5 Score=40.52 Aligned_cols=15 Identities=53% Similarity=0.895 Sum_probs=12.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|+.||||||.+
T Consensus 21 ~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLL 35 (196)
T ss_dssp EEEEESTTSTHHHHH
T ss_pred EEEEECCCCCHHHHH
Confidence 567799999999853
No 111
>PRK06526 transposase; Provisional
Probab=55.08 E-value=7.3 Score=40.09 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.8
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.+++++|++|||||+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred CceEEEEeCCCCchHHHHH
Confidence 4468899999999998765
No 112
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=54.17 E-value=9.3 Score=35.24 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=14.9
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++++|+||+|||| +++.+.+
T Consensus 2 i~i~GpsGsGKst--l~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKST--LLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHH--HHHHHHh
Confidence 4689999999998 4444443
No 113
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=54.12 E-value=10 Score=36.03 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=16.3
Q ss_pred ceEEEccCCCCchhHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~ 545 (610)
++++.|++|||||+.++.=++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999997765443
No 114
>PRK07261 topology modulation protein; Provisional
Probab=53.98 E-value=7.5 Score=37.25 Aligned_cols=15 Identities=47% Similarity=0.764 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++|+|.||+||||-+
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999955
No 115
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=53.80 E-value=7.5 Score=40.59 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.9
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|++|||||+.+
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5788899999999865
No 116
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=53.53 E-value=7.7 Score=36.97 Aligned_cols=15 Identities=47% Similarity=0.968 Sum_probs=13.4
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.||+||||.+
T Consensus 4 ~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 4 IYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999976
No 117
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=53.09 E-value=9.7 Score=34.32 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++.+.|+|++|+|||| +++++.
T Consensus 11 g~~~~i~G~nGsGKSt--Ll~~l~ 32 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKST--LLKALA 32 (137)
T ss_dssp TSEEEEEESTTSSHHH--HHHHHT
T ss_pred CCEEEEEccCCCcccc--ceeeec
Confidence 4567899999999998 445554
No 118
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.90 E-value=7.5 Score=38.33 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~ 545 (610)
-..++|++|.||||+. .||-
T Consensus 3 vi~lvGptGvGKTTt~-aKLA 22 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI-AKLA 22 (196)
T ss_dssp EEEEEESTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCchHhHH-HHHH
Confidence 3568999999999864 4553
No 119
>PRK10689 transcription-repair coupling factor; Provisional
Probab=51.81 E-value=16 Score=45.61 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=48.0
Q ss_pred cceeeChhhceEEEc---------CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF---------PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~---------~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
++|..|+.|...|-- +.+.+++|..|+|||.+++.-.+.. +. ++
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~----------~~---~g-------------- 649 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA----------VE---NH-------------- 649 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH----------HH---cC--------------
Confidence 788999999887663 2578999999999998765443321 00 00
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-++++....||.|+.+.+.+
T Consensus 650 --------~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 650 --------KQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred --------CeEEEEeCcHHHHHHHHHHHHH
Confidence 2348999999999999887754
No 120
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=51.52 E-value=26 Score=40.92 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.+++|||||.++.+-++..- . .. . ...+-|+++....||.||
T Consensus 43 g~dvl~~ApTGsGKT~af~lpll~~l-----~-----~~-~---------------------~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 43 GRDVLGMAQTGSGKTAAFSLPLLHNL-----D-----PE-L---------------------KAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHHh-----h-----hc-c---------------------CCCeEEEEeCcHHHHHHH
Confidence 56789999999999999887776431 0 00 0 003448999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 91 ~~~l~~ 96 (629)
T PRK11634 91 AEAMTD 96 (629)
T ss_pred HHHHHH
Confidence 776654
No 121
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=51.49 E-value=8.9 Score=41.00 Aligned_cols=18 Identities=50% Similarity=0.997 Sum_probs=15.0
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.+.++.|++|||||+.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 346889999999999865
No 122
>PRK00300 gmk guanylate kinase; Provisional
Probab=51.39 E-value=9.2 Score=37.28 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=15.5
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
..++++|+||+|||| +.+++.
T Consensus 6 ~~i~i~G~sGsGKst--l~~~l~ 26 (205)
T PRK00300 6 LLIVLSGPSGAGKST--LVKALL 26 (205)
T ss_pred CEEEEECCCCCCHHH--HHHHHH
Confidence 346789999999997 444443
No 123
>PRK09401 reverse gyrase; Reviewed
Probab=51.21 E-value=16 Score=45.75 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=43.8
Q ss_pred ceeeChhhceEE---EcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 509 PFEVTDEQLEMI---LFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 509 nfavTr~e~~vI---~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
++..|+-|+..| .-++++++++++|+|||+..+. +.. + +.. + |
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~----~-l~~-------~----------------g----- 123 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSL----Y-LAK-------K----------------G----- 123 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHH----H-HHh-------c----------------C-----
Confidence 345666666644 3377899999999999964332 211 1 110 0 0
Q ss_pred ceeEEEEecCHHHHHHHHHHhhhc
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~l 609 (610)
.+.|+|+...-|+.|+.+.+.++
T Consensus 124 -~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 124 -KKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred -CeEEEEeccHHHHHHHHHHHHHH
Confidence 45699999999999998877653
No 124
>PF05729 NACHT: NACHT domain
Probab=50.99 E-value=9.9 Score=34.98 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++|.|.+|+||||.+
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 688999999999854
No 125
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=50.52 E-value=9.5 Score=36.28 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=15.2
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-++++|++|+|||| +.+++.
T Consensus 3 ii~l~G~~GsGKsT--l~~~L~ 22 (180)
T TIGR03263 3 LIVISGPSGVGKST--LVKALL 22 (180)
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 36789999999999 444443
No 126
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.21 E-value=11 Score=37.16 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=20.5
Q ss_pred ccceeeChhhceEEEcCCceEEEccCCCCchhHHHHHHHH
Q 038017 507 DLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 507 dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+++|.+.+ +. +.++|++|+|||| +++++.
T Consensus 16 ~vsl~i~~-e~--------~~i~G~nGsGKST--Ll~~l~ 44 (214)
T cd03297 16 KIDFDLNE-EV--------TGIFGASGAGKST--LLRCIA 44 (214)
T ss_pred CceEEEcc-ee--------EEEECCCCCCHHH--HHHHHh
Confidence 35666655 43 5679999999997 566654
No 127
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=50.13 E-value=8.8 Score=38.90 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=17.8
Q ss_pred ceEEEccCCCCchhHHHHHHHHHhH
Q 038017 525 STFILGRSGTGKTTILTMKLFQNEK 549 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~e~ 549 (610)
++++.|++|+|||| +.+.++++.
T Consensus 52 h~lf~GPPG~GKTT--LA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT--LARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHH--HHHHHHHHC
T ss_pred eEEEECCCccchhH--HHHHHHhcc
Confidence 57889999999998 555666554
No 128
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=50.07 E-value=10 Score=30.49 Aligned_cols=14 Identities=50% Similarity=0.776 Sum_probs=11.6
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
..+.|.+|+||||.
T Consensus 2 i~i~G~~gsGKst~ 15 (69)
T cd02019 2 IAITGGSGSGKSTV 15 (69)
T ss_pred EEEECCCCCCHHHH
Confidence 35789999999873
No 129
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=49.85 E-value=19 Score=42.47 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=48.5
Q ss_pred chhHHHHHHhcC---CeEEEEcccccc----hhcccccCCCcEEEEecCCCCChhHH-----HhhccCcCcceEEEeCCC
Q 038017 250 NMGLLKDFCFTK---ASLIFCTASSSY----KLHSVAMEQLKFLVIDEAAQLKESES-----AIPLQLPCIQHAILVGDE 317 (610)
Q Consensus 250 ~~~~i~~~il~~---a~VI~~T~sss~----~l~~~~~~~fD~vIIDEAsQ~~E~e~-----lipL~~~~~k~~ILvGD~ 317 (610)
.|++++..+-++ .+|+++|-.-+. .-..+....|++||.||+-.++-..+ |+-+. .-.|+.|.|=|
T Consensus 485 ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~--An~RlLLTGTP 562 (941)
T KOG0389|consen 485 ERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSIN--ANFRLLLTGTP 562 (941)
T ss_pred HHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcccc--ccceEEeeCCc
Confidence 477787777776 689999933222 22346677899999999999876432 33333 23699999999
Q ss_pred CcC
Q 038017 318 CQL 320 (610)
Q Consensus 318 ~QL 320 (610)
.|-
T Consensus 563 LQN 565 (941)
T KOG0389|consen 563 LQN 565 (941)
T ss_pred ccc
Confidence 993
No 130
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=49.82 E-value=8.9 Score=35.95 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=12.0
Q ss_pred EEEccCCCCchhHH
Q 038017 527 FILGRSGTGKTTIL 540 (610)
Q Consensus 527 ~vlGrSgtgktt~~ 540 (610)
+++|.+|+||||.+
T Consensus 2 ~l~G~~GsGKSTla 15 (163)
T TIGR01313 2 VLMGVAGSGKSTIA 15 (163)
T ss_pred EEECCCCCCHHHHH
Confidence 67899999999863
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=49.69 E-value=9.4 Score=39.98 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=13.4
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|++|||||+.+
T Consensus 61 ~ill~G~pGtGKT~lA 76 (287)
T CHL00181 61 HMSFTGSPGTGKTTVA 76 (287)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678899999999854
No 132
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.52 E-value=9.8 Score=34.68 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=13.4
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
+.+.|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4689999999998653
No 133
>PRK00131 aroK shikimate kinase; Reviewed
Probab=49.34 E-value=11 Score=35.37 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.1
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
...+++|.+|+||||..
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 35788999999999964
No 134
>PRK08939 primosomal protein DnaI; Reviewed
Probab=48.68 E-value=27 Score=36.92 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=13.2
Q ss_pred CceEEEccCCCCchh
Q 038017 524 RSTFILGRSGTGKTT 538 (610)
Q Consensus 524 ~s~~vlGrSgtgktt 538 (610)
.++++.|++|||||.
T Consensus 157 ~gl~L~G~~G~GKTh 171 (306)
T PRK08939 157 KGLYLYGDFGVGKSY 171 (306)
T ss_pred CeEEEECCCCCCHHH
Confidence 468999999999996
No 135
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.45 E-value=12 Score=37.08 Aligned_cols=18 Identities=39% Similarity=0.787 Sum_probs=15.2
Q ss_pred eEEEccCCCCchhHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl 544 (610)
++++|.||.||| |+++|.
T Consensus 12 iiliGds~VGKt-CL~~Rf 29 (205)
T KOG0084|consen 12 IILIGDSGVGKT-CLLLRF 29 (205)
T ss_pred EEEECCCCcChh-hhhhhh
Confidence 688999999998 777766
No 136
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=48.25 E-value=12 Score=37.11 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-+.++|++|+|||| ++|++.
T Consensus 13 Ge~~~l~G~NGsGKST--Llk~i~ 34 (213)
T PRK15177 13 HEHIGILAAPGSGKTT--LTRLLC 34 (213)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3346789999999998 446654
No 137
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=48.22 E-value=13 Score=35.99 Aligned_cols=21 Identities=38% Similarity=0.303 Sum_probs=16.0
Q ss_pred eEEEccCCCCchh--HHHHHHHH
Q 038017 526 TFILGRSGTGKTT--ILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt--~~~~kl~~ 546 (610)
+.++|.||+|||| ..+.+++.
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHh
Confidence 4678999999998 45555554
No 138
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=48.02 E-value=11 Score=41.24 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=14.7
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 446889999999999753
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=47.91 E-value=36 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=26.2
Q ss_pred HhcCC-eEEEEcccccchhcc---cccCCCcEEEEecCCCCCh
Q 038017 258 CFTKA-SLIFCTASSSYKLHS---VAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 258 il~~a-~VI~~T~sss~~l~~---~~~~~fD~vIIDEAsQ~~E 296 (610)
+.... .|+++|......... .....++++|||||..+..
T Consensus 101 ~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 101 LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 34444 999999765433211 2345689999999998874
No 140
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=47.78 E-value=21 Score=45.09 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=45.7
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEE
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~ 590 (610)
+|++|.++|.. +.+++|.+..|||||++++-|.... +. .+. + .=+=+
T Consensus 2 ~t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~-----~~-~~~--------~------------------~~~il 49 (1232)
T TIGR02785 2 WTDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKK-----IL-RGV--------D------------------IDRLL 49 (1232)
T ss_pred CCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHH-----Hh-cCC--------C------------------HhhEE
Confidence 57778777765 5578899999999999999888642 11 110 0 01127
Q ss_pred EEecCHHHHHHHHHHhh
Q 038017 591 FVTVSPKLCFAVKQHIS 607 (610)
Q Consensus 591 fvt~s~~L~~~vk~~~~ 607 (610)
-||.+..-+.++|..+.
T Consensus 50 ~~tFt~~aa~e~~~ri~ 66 (1232)
T TIGR02785 50 VVTFTNAAAREMKERIE 66 (1232)
T ss_pred EEeccHHHHHHHHHHHH
Confidence 88999999999888764
No 141
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=47.62 E-value=13 Score=35.54 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=17.9
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-++++|+.||||||.+-.=+|.
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~ 42 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYA 42 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999977555544
No 142
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=47.46 E-value=11 Score=40.69 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+++.|++|||||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345789999999999754
No 143
>PRK09183 transposase/IS protein; Provisional
Probab=47.35 E-value=11 Score=38.73 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=15.9
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
+.+++++|++|||||+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHH
Confidence 45688999999999985543
No 144
>PRK02362 ski2-like helicase; Provisional
Probab=47.34 E-value=28 Score=41.40 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=45.4
Q ss_pred eChhhceEE----EcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccce
Q 038017 512 VTDEQLEMI----LFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYIL 587 (610)
Q Consensus 512 vTr~e~~vI----~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 587 (610)
+++-|.+.+ .-+.++++..++|+|||.++.+-+++... .+ -
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~--------------------------~ 68 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RG--------------------------G 68 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cC--------------------------C
Confidence 455555543 23678899999999999999888775421 00 2
Q ss_pred eEEEEecCHHHHHHHHHHhhhc
Q 038017 588 HQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 588 ~q~fvt~s~~L~~~vk~~~~~l 609 (610)
+-|||+...-||+|+-+.+.++
T Consensus 69 kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHh
Confidence 3599999999999988877653
No 145
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=46.92 E-value=11 Score=40.64 Aligned_cols=19 Identities=47% Similarity=0.765 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.+.++.|++|||||+.+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3457899999999998643
No 146
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=46.73 E-value=12 Score=38.51 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
+.++++.|.+|||||+.+-.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHH
Confidence 55788999999999987643
No 147
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=46.49 E-value=12 Score=42.29 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=48.2
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+.+|.-+++.|-+ |+.++.-...|+|||..++.-.+ |.+|+.-|-..++
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvl--E~L~r~kWs~~DG-------------------------- 141 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVL--EALYRLKWSPTDG-------------------------- 141 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHH--HHHHHcCCCCCCC--------------------------
Confidence 3456666666665 66677667789999999999887 5577777766654
Q ss_pred eeEEEEecCHHHHHHHH
Q 038017 587 LHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk 603 (610)
|-.+-||.-.-|+.|+=
T Consensus 142 lGalIISPTRELA~QtF 158 (758)
T KOG0343|consen 142 LGALIISPTRELALQTF 158 (758)
T ss_pred ceeEEecchHHHHHHHH
Confidence 55688888888887753
No 148
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=46.31 E-value=18 Score=37.18 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.++|.|++|||||+-++.=++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999997766443
No 149
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=46.13 E-value=12 Score=36.08 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
...++.|.||+||+|.+
T Consensus 4 e~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 4 ESYILMGVSGSGKSLIG 20 (176)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34678999999999844
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.91 E-value=12 Score=41.15 Aligned_cols=18 Identities=44% Similarity=0.852 Sum_probs=15.1
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999854
No 151
>PHA00729 NTP-binding motif containing protein
Probab=45.82 E-value=11 Score=38.04 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=14.4
Q ss_pred ceEEEccCCCCchhHHHH
Q 038017 525 STFILGRSGTGKTTILTM 542 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~ 542 (610)
++++.|.+|||||+.+..
T Consensus 19 nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999985543
No 152
>PRK06620 hypothetical protein; Validated
Probab=45.50 E-value=12 Score=37.34 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.3
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|+|||+-+
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999744
No 153
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=45.45 E-value=13 Score=35.51 Aligned_cols=15 Identities=47% Similarity=0.758 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 6 i~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 6 IFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999965
No 154
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=45.35 E-value=14 Score=37.84 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
|...-++|+||+||+|.+
T Consensus 33 Ge~lgivGeSGsGKSTL~ 50 (252)
T COG1124 33 GETLGIVGESGSGKSTLA 50 (252)
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 555779999999999843
No 155
>PRK05973 replicative DNA helicase; Provisional
Probab=45.28 E-value=13 Score=37.93 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=22.5
Q ss_pred eChhhceEEEc--CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF--PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~--~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
.||++.-.--+ ++.++|.|++|+|||+-++.=+.
T Consensus 51 ~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~ 86 (237)
T PRK05973 51 TTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAV 86 (237)
T ss_pred CCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 46665533233 44577899999999987665443
No 156
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.12 E-value=38 Score=37.74 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred HHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCChh
Q 038017 257 FCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E~ 297 (610)
.+-..++||+||+.....+ ..+....+++||||||=.+.+.
T Consensus 121 ~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~ 164 (456)
T PRK10590 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDM 164 (456)
T ss_pred HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhcc
Confidence 4456789999998654332 1233457899999999876553
No 157
>PRK10536 hypothetical protein; Provisional
Probab=44.99 E-value=14 Score=38.28 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=16.9
Q ss_pred ceEEEccCCCCchhHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~ 545 (610)
-+++.|+.|||||+.++.-..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999998776544
No 158
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=44.99 E-value=12 Score=36.64 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=13.8
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
+++.|++|+||||.+-
T Consensus 4 ilI~GptGSGKTTll~ 19 (198)
T cd01131 4 VLVTGPTGSGKSTTLA 19 (198)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999999864
No 159
>PRK08084 DNA replication initiation factor; Provisional
Probab=44.89 E-value=13 Score=37.59 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=13.7
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
+.++.|++|+|||+.+
T Consensus 47 ~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 47 YIYLWSREGAGRSHLL 62 (235)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999754
No 160
>PRK14738 gmk guanylate kinase; Provisional
Probab=44.84 E-value=12 Score=36.91 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-++++|+||+||||.+
T Consensus 15 ~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 15 LVVISGPSGVGKDAVL 30 (206)
T ss_pred EEEEECcCCCCHHHHH
Confidence 3567899999999943
No 161
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.77 E-value=13 Score=38.15 Aligned_cols=17 Identities=47% Similarity=0.665 Sum_probs=14.1
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
|..+.++|.|||||||.
T Consensus 34 Gei~~iiGgSGsGKStl 50 (263)
T COG1127 34 GEILAILGGSGSGKSTL 50 (263)
T ss_pred CcEEEEECCCCcCHHHH
Confidence 45577999999999983
No 162
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=44.76 E-value=13 Score=32.41 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=15.5
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++|+|.+|+|||| ++.++...
T Consensus 2 I~V~G~~g~GKTs-Li~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTS-LIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHH-HHHHHHHS
T ss_pred EEEECcCCCCHHH-HHHHHhcC
Confidence 5789999999997 35555543
No 163
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=44.65 E-value=13 Score=36.08 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=18.1
Q ss_pred eEEEccCCCCchhHHHHHHHH-HhHhhhhh
Q 038017 526 TFILGRSGTGKTTILTMKLFQ-NEKHHHMA 554 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~-~e~~~~~~ 554 (610)
++++|.||+||+|- .+.+. +-.+.|+.
T Consensus 3 iiilG~pGaGK~T~--A~~La~~~~i~hls 30 (178)
T COG0563 3 ILILGPPGAGKSTL--AKKLAKKLGLPHLD 30 (178)
T ss_pred EEEECCCCCCHHHH--HHHHHHHhCCcEEc
Confidence 57899999999983 34443 33355555
No 164
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=44.58 E-value=13 Score=35.91 Aligned_cols=18 Identities=44% Similarity=0.792 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+.++|++|+||||.+
T Consensus 25 g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 25 RKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456789999999999854
No 165
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=19 Score=39.88 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=23.5
Q ss_pred cceeeChhhceEEEcCCceEEEccCCCCchh
Q 038017 508 LPFEVTDEQLEMILFPRSTFILGRSGTGKTT 538 (610)
Q Consensus 508 lnfavTr~e~~vI~~~~s~~vlGrSgtgktt 538 (610)
..-++...+.+|..-.++++++|++|+|||.
T Consensus 211 ~~~~ld~~~~dv~LeKSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 211 IAKALDEDDEDVELEKSNVLLLGPTGSGKTL 241 (564)
T ss_pred hcccccccccceeeecccEEEECCCCCchhH
Confidence 3344455555777778899999999999994
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=44.25 E-value=13 Score=36.02 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.2
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.++++.|++|||||..+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp --EEEEEESTTSSHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHH
Confidence 4468899999999997543
No 167
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=44.15 E-value=13 Score=38.75 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=15.0
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+..+.++|++|+||||.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3346678999999999765
No 168
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=43.92 E-value=17 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEcCCceEEEccCCCCchhHHHHHH
Q 038017 518 EMILFPRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 518 ~vI~~~~s~~vlGrSgtgktt~~~~kl 544 (610)
.+.+++..+.+.|.||.||.++++--+
T Consensus 13 ~v~i~G~GVLi~G~SG~GKS~lAl~Li 39 (171)
T PF07475_consen 13 LVDIGGVGVLITGPSGIGKSELALELI 39 (171)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Confidence 455667889999999999999887554
No 169
>PRK13767 ATP-dependent helicase; Provisional
Probab=43.89 E-value=39 Score=41.10 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.0
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHH
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFA 601 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~ 601 (610)
-+.++++..++|+|||.++++-++..-... .. .+. ....++.|+|+...-|+++
T Consensus 46 ~g~nvli~APTGSGKTlaa~Lpil~~l~~~-----~~----~~~-----------------~~~~~~~LyIsPtraLa~d 99 (876)
T PRK13767 46 EGKNVLISSPTGSGKTLAAFLAIIDELFRL-----GR----EGE-----------------LEDKVYCLYVSPLRALNND 99 (876)
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHHHHHhh-----cc----ccC-----------------CCCCeEEEEEcCHHHHHHH
Confidence 377899999999999999988877532110 00 000 0112778999999999999
Q ss_pred HHHHh
Q 038017 602 VKQHI 606 (610)
Q Consensus 602 vk~~~ 606 (610)
+.+.+
T Consensus 100 i~~~L 104 (876)
T PRK13767 100 IHRNL 104 (876)
T ss_pred HHHHH
Confidence 87654
No 170
>PRK08233 hypothetical protein; Provisional
Probab=43.79 E-value=13 Score=35.10 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=12.4
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999855
No 171
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=43.78 E-value=14 Score=37.61 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=13.8
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
..++.|++|+||||.+-
T Consensus 45 ~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 45 FILITGEVGAGKTTLIR 61 (269)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 46789999999998554
No 172
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=43.70 E-value=37 Score=39.90 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.2
Q ss_pred CCCcEEEEecCCCCChh--HHHhhccCcCcceEEEeCCC
Q 038017 281 EQLKFLVIDEAAQLKES--ESAIPLQLPCIQHAILVGDE 317 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~--e~lipL~~~~~k~~ILvGD~ 317 (610)
..||+||||||+-++.. +.++|+......++|++.=|
T Consensus 293 ~~~DLLIVDEAAfI~~~~l~aIlP~l~~~~~k~IiISS~ 331 (752)
T PHA03333 293 QNPDLVIVDEAAFVNPGALLSVLPLMAVKGTKQIHISSP 331 (752)
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHccCCCceEEEeCC
Confidence 46899999999999874 56777765444566666433
No 173
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=43.63 E-value=14 Score=36.26 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 27 G~~~~i~G~nGsGKST--Ll~~l~ 48 (214)
T cd03292 27 GEFVFLVGPSGAGKST--LLKLIY 48 (214)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666654
No 174
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=43.51 E-value=11 Score=38.68 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHhcCCeEEEEcccccc------hhcccccCCCcEEEEecCCCCChhH-----HHhhccCcCcceEEEeCCCCcCCc
Q 038017 257 FCFTKASLIFCTASSSY------KLHSVAMEQLKFLVIDEAAQLKESE-----SAIPLQLPCIQHAILVGDECQLPA 322 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~------~l~~~~~~~fD~vIIDEAsQ~~E~e-----~lipL~~~~~k~~ILvGD~~QLpP 322 (610)
.......++++|-.... ....+....|+.||||||-.+.... .+.-+. ...+++|-|-|.+-.|
T Consensus 103 ~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~--~~~~~lLSgTP~~n~~ 177 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLR--ARYRWLLSGTPIQNSL 177 (299)
T ss_dssp SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCC--ECEEEEE-SS-SSSGS
T ss_pred cccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccccc--cceEEeeccccccccc
Confidence 34567789999866544 1223344569999999998884322 233332 4578889998877655
No 175
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=43.34 E-value=14 Score=36.64 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|.+|||||+-+
T Consensus 43 ~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999743
No 176
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=43.22 E-value=14 Score=35.58 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 18 Ge~~~i~G~nGsGKST--Ll~~i~ 39 (190)
T TIGR01166 18 GEVLALLGANGAGKST--LLLHLN 39 (190)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3347789999999998 556554
No 177
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=43.07 E-value=15 Score=33.73 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
+++++|.+|+||||..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4678999999999854
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.07 E-value=17 Score=36.36 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+.+.++|++|+|||| +++++.-
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~g 48 (232)
T cd03300 26 GEFFTLLGPSGCGKTT--LLRLIAG 48 (232)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457899999999997 6677654
No 179
>PRK05480 uridine/cytidine kinase; Provisional
Probab=43.04 E-value=14 Score=36.33 Aligned_cols=15 Identities=53% Similarity=0.658 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|.|+||+||||.+
T Consensus 9 I~I~G~sGsGKTTl~ 23 (209)
T PRK05480 9 IGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999855
No 180
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=43.01 E-value=14 Score=35.16 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.2
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
++++|.+|+||||.+-
T Consensus 2 i~i~G~pGsGKst~a~ 17 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCA 17 (183)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4789999999999643
No 181
>PRK06217 hypothetical protein; Validated
Probab=42.98 E-value=14 Score=35.61 Aligned_cols=15 Identities=47% Similarity=0.631 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++|+|.||+||||.+
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999843
No 182
>PRK06893 DNA replication initiation factor; Validated
Probab=42.96 E-value=14 Score=37.18 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=12.5
Q ss_pred ceEEEccCCCCchh
Q 038017 525 STFILGRSGTGKTT 538 (610)
Q Consensus 525 s~~vlGrSgtgktt 538 (610)
.++++|++|||||.
T Consensus 41 ~l~l~G~~G~GKTh 54 (229)
T PRK06893 41 FFYIWGGKSSGKSH 54 (229)
T ss_pred eEEEECCCCCCHHH
Confidence 46899999999996
No 183
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=42.83 E-value=14 Score=36.31 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 30 G~~~~l~G~nGsGKST--Ll~~i~ 51 (218)
T cd03255 30 GEFVAIVGPSGSGKST--LLNILG 51 (218)
T ss_pred CCEEEEEcCCCCCHHH--HHHHHh
Confidence 4457799999999998 666654
No 184
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=42.81 E-value=15 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
++-+.++|+||+||||-+
T Consensus 21 G~~~~l~G~nG~GKSTLl 38 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLV 38 (176)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 334779999999999955
No 185
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=42.71 E-value=44 Score=36.78 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 255 KDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
...+..+++||++|+.....+ ..+....+++||||||=.+.+
T Consensus 117 ~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 117 AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 344567889999998654332 123345689999999987654
No 186
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=42.61 E-value=14 Score=39.20 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=14.8
Q ss_pred CceEEEccCCCCchhHHH
Q 038017 524 RSTFILGRSGTGKTTILT 541 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~ 541 (610)
..+++.|++|||||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457889999999998654
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=42.60 E-value=16 Score=39.67 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=18.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|+||+|||| ++|++..
T Consensus 19 Gei~~l~G~sGsGKST--LLr~L~G 41 (363)
T TIGR01186 19 GEIFVIMGLSGSGKST--TVRMLNR 41 (363)
T ss_pred CCEEEEECCCCChHHH--HHHHHhC
Confidence 4557899999999997 6677654
No 188
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.54 E-value=16 Score=35.75 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=16.5
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-+.++|++|+|||| ++|++.
T Consensus 25 e~~~l~G~nGsGKST--Ll~~l~ 45 (211)
T cd03298 25 EITAIVGPSGSGKST--LLNLIA 45 (211)
T ss_pred CEEEEECCCCCCHHH--HHHHHh
Confidence 347799999999998 556664
No 189
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=42.48 E-value=17 Score=45.17 Aligned_cols=26 Identities=50% Similarity=0.700 Sum_probs=20.7
Q ss_pred hhhceEEEcCCc-eEEEccCCCCchhH
Q 038017 514 DEQLEMILFPRS-TFILGRSGTGKTTI 539 (610)
Q Consensus 514 r~e~~vI~~~~s-~~vlGrSgtgktt~ 539 (610)
+..++.|.|.++ ++|+|.+||||||.
T Consensus 17 ~~d~~~i~F~sPlTLIvG~NG~GKTTi 43 (1294)
T KOG0962|consen 17 DKDRNTIEFFSPLTLIVGANGTGKTTI 43 (1294)
T ss_pred CcccceeeecCCeeeEecCCCCCchhH
Confidence 445678888765 77899999999984
No 190
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=42.41 E-value=14 Score=41.12 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..++++|++|||||+.+
T Consensus 218 ~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLA 234 (438)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999999753
No 191
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.40 E-value=16 Score=38.03 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
+.+++++|++|||||...-..+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHhhh
Confidence 3457999999999998655433
No 192
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=42.23 E-value=14 Score=41.43 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
|.-+.++|+||+||+|.+-
T Consensus 32 GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 32 SSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCEEEEECCCCCCHHHHHh
Confidence 3447899999999999554
No 193
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=42.09 E-value=15 Score=38.26 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+++.|++|||||+.+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34788999999999754
No 194
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=41.96 E-value=18 Score=33.58 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=27.9
Q ss_pred HHhcCCeEEEEcccccchhcc---cccCCCcEEEEecCCCCCh
Q 038017 257 FCFTKASLIFCTASSSYKLHS---VAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l~~---~~~~~fD~vIIDEAsQ~~E 296 (610)
.+-..++|+++|+.....+.. .....+++||||||-.+..
T Consensus 91 ~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 91 VLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp HHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred cccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 344579999999877544321 1234589999999877765
No 195
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=41.87 E-value=15 Score=36.00 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|++|+|||| ++|++.
T Consensus 28 G~~~~l~G~nGsGKST--Ll~~i~ 49 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTT--LLKLLY 49 (214)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447789999999998 556654
No 196
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.83 E-value=18 Score=36.84 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| |++++.-
T Consensus 38 Ge~~~l~G~nGsGKST--Ll~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKST--FIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHh
Confidence 4457799999999998 6677653
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=41.78 E-value=15 Score=34.48 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=17.8
Q ss_pred eEEEccCCCCchhHHHHHHHHHhHhhhhh
Q 038017 526 TFILGRSGTGKTTILTMKLFQNEKHHHMA 554 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~e~~~~~~ 554 (610)
+.++|++|+|||| +.-.|-..+..|+..
T Consensus 4 imliG~~g~GKTT-L~q~L~~~~~~~~KT 31 (143)
T PF10662_consen 4 IMLIGPSGSGKTT-LAQALNGEEIRYKKT 31 (143)
T ss_pred EEEECCCCCCHHH-HHHHHcCCCCCcCcc
Confidence 5789999999997 233343444444333
No 198
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=41.74 E-value=16 Score=38.59 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHH
Q 038017 526 TFILGRSGTGKTTILTM 542 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~ 542 (610)
....|+.|||||++.+.
T Consensus 60 ~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 60 YLFYGPPGTGKTSTALA 76 (346)
T ss_pred EEeeCCCCCcHhHHHHH
Confidence 56789999999998753
No 199
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=41.65 E-value=33 Score=41.64 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=45.3
Q ss_pred EEEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHH
Q 038017 519 MILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKL 598 (610)
Q Consensus 519 vI~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L 598 (610)
.|..|+++|.++.+|+|||..+++-||.... . .. ..+.+++ +=.+|++...-|
T Consensus 398 ~ImsGrdvIgvakTgSGKT~af~LPmirhi~----d-Qr--------------~~~~gdG--------Pi~li~aPtrel 450 (997)
T KOG0334|consen 398 AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIK----D-QR--------------PLEEGDG--------PIALILAPTREL 450 (997)
T ss_pred hhccCcceEEeeccCCccchhhhcchhhhhh----c-CC--------------ChhhCCC--------ceEEEEcCCHHH
Confidence 4566899999999999999999999982111 0 00 1122222 456999999999
Q ss_pred HHHHHHHhhhc
Q 038017 599 CFAVKQHISHM 609 (610)
Q Consensus 599 ~~~vk~~~~~l 609 (610)
|.||-+-..++
T Consensus 451 a~QI~r~~~kf 461 (997)
T KOG0334|consen 451 AMQIHREVRKF 461 (997)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.60 E-value=16 Score=37.24 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=20.6
Q ss_pred ceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhh
Q 038017 525 STFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFY 559 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~ 559 (610)
..++-|+.||||||+.+- +.++.+=...-|++.
T Consensus 50 ~liisGpPG~GKTTsi~~--LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILC--LARELLGDSYKEAVL 82 (333)
T ss_pred ceEeeCCCCCchhhHHHH--HHHHHhChhhhhHhh
Confidence 467889999999998653 344443333334443
No 201
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=41.55 E-value=17 Score=35.88 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.+.+.|++|+|||+-++.-..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34477999999999998776554
No 202
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=41.50 E-value=16 Score=35.21 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=13.2
Q ss_pred CceEEEccCCCCchh
Q 038017 524 RSTFILGRSGTGKTT 538 (610)
Q Consensus 524 ~s~~vlGrSgtgktt 538 (610)
+..+++|+||+||+|
T Consensus 3 r~ivl~Gpsg~GK~t 17 (184)
T smart00072 3 RPIVLSGPSGVGKGT 17 (184)
T ss_pred cEEEEECCCCCCHHH
Confidence 457899999999998
No 203
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.44 E-value=15 Score=35.90 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 27 G~~~~l~G~nGsGKST--Ll~~l~ 48 (211)
T cd03225 27 GEFVLIVGPNGSGKST--LLRLLN 48 (211)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 566654
No 204
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.41 E-value=16 Score=36.62 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~l~ 47 (235)
T cd03261 26 GEILAIIGPSGSGKST--LLRLIV 47 (235)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 666664
No 205
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.21 E-value=16 Score=35.71 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.+.|++|+|||+.++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~ 31 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMI 31 (209)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577999999999998753
No 206
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.20 E-value=16 Score=36.48 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..+.++|++|+|||| ++|++.-
T Consensus 31 Ge~~~l~G~nGsGKST--Ll~~l~G 53 (233)
T cd03258 31 GEIFGIIGRSGAGKST--LIRCING 53 (233)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457899999999998 6666653
No 207
>PF13479 AAA_24: AAA domain
Probab=41.08 E-value=16 Score=36.23 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=14.4
Q ss_pred ceEEEccCCCCchhHHHH
Q 038017 525 STFILGRSGTGKTTILTM 542 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~ 542 (610)
.++|+|.+|+||||.+..
T Consensus 5 ~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAAS 22 (213)
T ss_pred EEEEECCCCCCHHHHHHh
Confidence 467899999999985543
No 208
>PRK14737 gmk guanylate kinase; Provisional
Probab=41.06 E-value=15 Score=35.75 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|+||+||+|..
T Consensus 7 ivl~GpsG~GK~tl~ 21 (186)
T PRK14737 7 FIISSVAGGGKSTII 21 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999843
No 209
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=41.00 E-value=16 Score=35.94 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~l~ 50 (216)
T TIGR00960 29 GEMVFLVGHSGAGKST--FLKLIL 50 (216)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3457799999999998 666654
No 210
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.85 E-value=16 Score=41.23 Aligned_cols=17 Identities=41% Similarity=0.907 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+.++++.|++|||||+.
T Consensus 88 ~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 55789999999999975
No 211
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=40.74 E-value=13 Score=38.85 Aligned_cols=14 Identities=50% Similarity=0.859 Sum_probs=12.5
Q ss_pred ceEEEccCCCCchh
Q 038017 525 STFILGRSGTGKTT 538 (610)
Q Consensus 525 s~~vlGrSgtgktt 538 (610)
++.|+|.||+||||
T Consensus 6 nImVvG~sG~GKTT 19 (281)
T PF00735_consen 6 NIMVVGESGLGKTT 19 (281)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999997
No 212
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=40.72 E-value=16 Score=35.54 Aligned_cols=15 Identities=53% Similarity=0.658 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|+||+||||.+
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 357899999999965
No 213
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.69 E-value=16 Score=38.29 Aligned_cols=15 Identities=47% Similarity=0.795 Sum_probs=13.1
Q ss_pred ceEEEccCCCCchhH
Q 038017 525 STFILGRSGTGKTTI 539 (610)
Q Consensus 525 s~~vlGrSgtgktt~ 539 (610)
-+.++|+||+||||+
T Consensus 26 vTAlFG~SGsGKTsl 40 (352)
T COG4148 26 ITALFGPSGSGKTSL 40 (352)
T ss_pred eEEEecCCCCChhhH
Confidence 477999999999984
No 214
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=40.57 E-value=19 Score=42.67 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=18.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|+||+||+| +.||+..
T Consensus 499 Ge~vaIvG~SGsGKST--L~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKST--LLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4458899999999998 7777753
No 215
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=40.54 E-value=22 Score=33.56 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=11.7
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
..++|.+|+||||.
T Consensus 2 i~i~G~~gsGKTtl 15 (155)
T TIGR00176 2 LQIVGPKNSGKTTL 15 (155)
T ss_pred EEEECCCCCCHHHH
Confidence 35789999999983
No 216
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=40.53 E-value=17 Score=34.70 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-.++.|.||+||||.+
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999954
No 217
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.51 E-value=16 Score=40.01 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=17.1
Q ss_pred CceEEEccCCCCchhHHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
.|+|+.|+.||||||. .+++..
T Consensus 49 ~SmIl~GPPG~GKTTl--A~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTL--ARLIAG 70 (436)
T ss_pred ceeEEECCCCCCHHHH--HHHHHH
Confidence 4789999999999984 455544
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=40.47 E-value=17 Score=34.61 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-.++.|.+|+||||.+
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999876
No 219
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.46 E-value=16 Score=36.74 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..+++|.+|+||||.+
T Consensus 14 ~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTI 29 (220)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999954
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.31 E-value=16 Score=39.81 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+....++|++|+||||.+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5567789999999998653
No 221
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=40.22 E-value=22 Score=40.40 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| ++|++.-
T Consensus 27 Ge~~~liG~NGsGKST--Ll~~l~G 49 (530)
T PRK15064 27 GNRYGLIGANGCGKST--FMKILGG 49 (530)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 3347789999999998 6677653
No 222
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=40.20 E-value=17 Score=34.93 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=13.8
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
++..+++|+||+||+|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l 18 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTL 18 (183)
T ss_dssp SSEEEEESSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34578899999999973
No 223
>PRK06762 hypothetical protein; Provisional
Probab=40.20 E-value=16 Score=34.21 Aligned_cols=15 Identities=60% Similarity=0.822 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 5 i~i~G~~GsGKST~A 19 (166)
T PRK06762 5 IIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999955
No 224
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=40.09 E-value=23 Score=35.22 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.+.|++|+|||+.+..
T Consensus 20 G~~~~i~G~~G~GKT~l~~~ 39 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLH 39 (229)
T ss_pred CeEEEEECCCCCChHHHHHH
Confidence 45678999999999987653
No 225
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=39.76 E-value=28 Score=40.71 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=43.6
Q ss_pred cccCCCcEEEEecCCCCChh--HHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccc-c
Q 038017 278 VAMEQLKFLVIDEAAQLKES--ESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLS-M 354 (610)
Q Consensus 278 ~~~~~fD~vIIDEAsQ~~E~--e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~-~ 354 (610)
.....||++|||||.-++.. +.++|+......++|++.=+. ..+-..|+.-.|. +.+..||+ +
T Consensus 348 iRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~N------------s~~~sTSFL~nLk--~a~~~lLNVV 413 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTN------------TGKASTSFLYNLK--GAADELLNVV 413 (738)
T ss_pred ccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCC------------CCccchHHHHhhc--CchhhheeeE
Confidence 34458999999999999973 456676643334455443111 1112234333332 23456888 7
Q ss_pred ccCCchhhhhcc
Q 038017 355 QYRMHPSISFFP 366 (610)
Q Consensus 355 QYRmhp~I~~f~ 366 (610)
+|-|....-+|.
T Consensus 414 sYvCdeH~~~~~ 425 (738)
T PHA03368 414 TYICDEHMPRVV 425 (738)
T ss_pred EEEChhhhhhhh
Confidence 888866665554
No 226
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.71 E-value=20 Score=35.44 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 30 G~~~~i~G~nGsGKST--Ll~~l~ 51 (220)
T cd03293 30 GEFVALVGPSGCGKST--LLRIIA 51 (220)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556664
No 227
>PRK08181 transposase; Validated
Probab=39.70 E-value=17 Score=37.69 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=13.9
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+.+++++|++|||||.-
T Consensus 106 ~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 106 GANLLLFGPPGGGKSHL 122 (269)
T ss_pred CceEEEEecCCCcHHHH
Confidence 34688999999999953
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.67 E-value=46 Score=34.19 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=14.2
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+.+++++|.+|||||..
T Consensus 105 ~~nl~l~G~~G~GKThL 121 (254)
T COG1484 105 GENLVLLGPPGVGKTHL 121 (254)
T ss_pred CCcEEEECCCCCcHHHH
Confidence 45789999999999953
No 229
>PRK06547 hypothetical protein; Provisional
Probab=39.64 E-value=17 Score=35.04 Aligned_cols=15 Identities=60% Similarity=0.888 Sum_probs=12.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|.|.||+||||.+
T Consensus 18 i~i~G~~GsGKTt~a 32 (172)
T PRK06547 18 VLIDGRSGSGKTTLA 32 (172)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999865
No 230
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=17 Score=39.24 Aligned_cols=16 Identities=44% Similarity=0.868 Sum_probs=14.2
Q ss_pred CCceEEEccCCCCchh
Q 038017 523 PRSTFILGRSGTGKTT 538 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt 538 (610)
|..++++|+.|||||.
T Consensus 185 PKGVLLYGPPGTGKTL 200 (406)
T COG1222 185 PKGVLLYGPPGTGKTL 200 (406)
T ss_pred CCceEeeCCCCCcHHH
Confidence 5679999999999994
No 231
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=39.62 E-value=17 Score=32.39 Aligned_cols=16 Identities=56% Similarity=0.621 Sum_probs=13.8
Q ss_pred CCceEEEccCCCCchh
Q 038017 523 PRSTFILGRSGTGKTT 538 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt 538 (610)
+.|+++.|.|.||||+
T Consensus 90 p~SivieG~sRTGKT~ 105 (106)
T PF08283_consen 90 PISIVIEGDSRTGKTM 105 (106)
T ss_pred CCceeEecCCccCcCC
Confidence 4578999999999994
No 232
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=39.41 E-value=17 Score=34.75 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999865
No 233
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=39.38 E-value=18 Score=34.59 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.0
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
.++++|.+|+||||..-
T Consensus 6 ~I~liG~~GaGKStl~~ 22 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGR 22 (172)
T ss_pred EEEEECCCCcCHHHHHH
Confidence 46789999999998543
No 234
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=39.27 E-value=18 Score=35.27 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| +++++.
T Consensus 24 Ge~~~i~G~nGsGKST--Ll~~l~ 45 (206)
T TIGR03608 24 GKMYAIIGESGSGKST--LLNIIG 45 (206)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666665
No 235
>PRK03839 putative kinase; Provisional
Probab=39.22 E-value=17 Score=34.70 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=15.1
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++++|.+|+||||. -+.+.+
T Consensus 3 I~l~G~pGsGKsT~--~~~La~ 22 (180)
T PRK03839 3 IAITGTPGVGKTTV--SKLLAE 22 (180)
T ss_pred EEEECCCCCCHHHH--HHHHHH
Confidence 57899999999984 444443
No 236
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.19 E-value=23 Score=40.52 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=31.5
Q ss_pred cEEEEecCCCCChhHHHhhc-----------cCcCcceEEEeCCCCcCCcccccc
Q 038017 284 KFLVIDEAAQLKESESAIPL-----------QLPCIQHAILVGDECQLPAMVESS 327 (610)
Q Consensus 284 D~vIIDEAsQ~~E~e~lipL-----------~~~~~k~~ILvGD~~QLpP~v~s~ 327 (610)
+++|+|||+++...- +-.+ ..++++.+++.||..|++|++...
T Consensus 218 ~~~i~dE~~m~~~~~-fe~ld~~~r~i~~~~~pfggk~~~~~GDF~qllpv~~~~ 271 (540)
T KOG0987|consen 218 KLIIWDEAPMVDRYC-FEKLDRTLRDIRKNDKPFGGKVLVLGGDFRQLLPVIEGA 271 (540)
T ss_pred cceeeecccccchhh-hhhhhHHHHHHhhcCCCCCCeeeeccCcccccCcccCCC
Confidence 779999999998421 1110 023578999999999999998653
No 237
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.03 E-value=18 Score=35.45 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 26 G~~~~i~G~nGsGKST--Ll~~l~ 47 (210)
T cd03269 26 GEIFGLLGPNGAGKTT--TIRMIL 47 (210)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666654
No 238
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.01 E-value=21 Score=38.17 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.2
Q ss_pred ceEEEcCCceEEEccCCCCchhHH
Q 038017 517 LEMILFPRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 517 ~~vI~~~~s~~vlGrSgtgktt~~ 540 (610)
-++|...+-..+=|+.|||||+-|
T Consensus 171 tnlIt~NRliLlhGPPGTGKTSLC 194 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGTGKTSLC 194 (423)
T ss_pred CceeeeeeEEEEeCCCCCChhHHH
Confidence 467887777888999999999865
No 239
>PF12846 AAA_10: AAA-like domain
Probab=38.93 E-value=25 Score=35.84 Aligned_cols=20 Identities=55% Similarity=0.994 Sum_probs=16.0
Q ss_pred ceEEEccCCCCchhHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~ 545 (610)
.++++|.+|+|||+.+. .++
T Consensus 3 h~~i~G~tGsGKT~~~~-~l~ 22 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLK-NLL 22 (304)
T ss_pred eEEEECCCCCcHHHHHH-HHH
Confidence 47899999999998766 443
No 240
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=38.90 E-value=21 Score=41.56 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| |+|++.-
T Consensus 29 Ge~v~LvG~NGsGKST--LLriiaG 51 (635)
T PRK11147 29 NERVCLVGRNGAGKST--LMKILNG 51 (635)
T ss_pred CCEEEEECCCCCCHHH--HHHHHcC
Confidence 3447799999999998 6677653
No 241
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=38.87 E-value=21 Score=35.51 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=17.3
Q ss_pred CceEEEccCCCCchhHHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.+.++|++|+|||| ++|++.-
T Consensus 34 e~~~l~G~nGsGKST--Llk~l~G 55 (226)
T cd03234 34 QVMAILGSSGSGKTT--LLDAISG 55 (226)
T ss_pred eEEEEECCCCCCHHH--HHHHHhC
Confidence 346789999999997 6777654
No 242
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=38.87 E-value=48 Score=40.34 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=45.4
Q ss_pred ceeeChhhceE---EEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 509 PFEVTDEQLEM---ILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 509 nfavTr~e~~v---I~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
|+.+|+=+.++ +..+.+.+...++|||||.++++-++..-. .+ +
T Consensus 90 p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL---------~g----------------------~-- 136 (970)
T PRK12899 90 QWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL---------TG----------------------K-- 136 (970)
T ss_pred CCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh---------hc----------------------C--
Confidence 33355545443 334677899999999999999999885311 00 0
Q ss_pred ceeEEEEecCHHHHHHHHHHhhhc
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~l 609 (610)
..+-||+|..||.++.+.+..|
T Consensus 137 --~v~IVTpTrELA~Qdae~m~~L 158 (970)
T PRK12899 137 --PVHLVTVNDYLAQRDCEWVGSV 158 (970)
T ss_pred --CeEEEeCCHHHHHHHHHHHHHH
Confidence 0256799999999998877543
No 243
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=38.79 E-value=18 Score=35.51 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 25 Ge~~~l~G~nGsGKST--Ll~~l~ 46 (213)
T cd03235 25 GEFLAIVGPNGAGKST--LLKAIL 46 (213)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 4457799999999998 566654
No 244
>PRK04296 thymidine kinase; Provisional
Probab=38.71 E-value=21 Score=34.81 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=17.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-.++.|+.|+||||.++..+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999877766543
No 245
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=38.66 E-value=18 Score=35.65 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-..++|++|+|||| ++|++.
T Consensus 31 G~~~~i~G~nGsGKST--Ll~~i~ 52 (221)
T TIGR02211 31 GEIVAIVGSSGSGKST--LLHLLG 52 (221)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 246
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.65 E-value=42 Score=35.22 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl 544 (610)
.+++|+||+||-|.+.--|
T Consensus 37 ll~yGPSGaGKKTrimclL 55 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLL 55 (351)
T ss_pred EEEECCCCCCchhhHHHHH
Confidence 6789999999988654433
No 247
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=38.63 E-value=21 Score=36.09 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| +++++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~i~ 50 (250)
T PRK14240 29 NQVTALIGPSGCGKST--FLRTLN 50 (250)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666664
No 248
>PRK14701 reverse gyrase; Provisional
Probab=38.44 E-value=30 Score=44.81 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=41.5
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+..|+.|+.+|-. ++++++++++|+|||++.+. + .. ++ .. + |
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~-~-al---~~-~~-------~----------------g------ 122 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAF-I-AL---FL-AL-------K----------------G------ 122 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH-H-HH---HH-Hh-------c----------------C------
Confidence 4566666665533 77889999999999984332 1 11 11 00 0 0
Q ss_pred eeEEEEecCHHHHHHHHHHhhh
Q 038017 587 LHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-|.|+...-|+.|+...+..
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHH
Confidence 3458889999999888777654
No 249
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=38.44 E-value=19 Score=36.19 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 28 Ge~~~l~G~nGsGKST--Ll~~l~ 49 (243)
T TIGR02315 28 GEFVAIIGPSGAGKST--LLRCIN 49 (243)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 566664
No 250
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.36 E-value=19 Score=36.05 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (241)
T cd03256 27 GEFVALIGPSGAGKST--LLRCLN 48 (241)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666654
No 251
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=38.28 E-value=19 Score=35.57 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-+.++|++|+|||| ++|++.-
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTT--TLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3447799999999997 6677653
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=38.14 E-value=19 Score=34.46 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| +++++.
T Consensus 25 G~~~~l~G~nGsGKSt--Ll~~i~ 46 (180)
T cd03214 25 GEIVGILGPNGAGKST--LLKTLA 46 (180)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 253
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=38.01 E-value=19 Score=35.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~ 47 (205)
T cd03226 26 GEIIALTGKNGAGKTT--LAKILA 47 (205)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 556654
No 254
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=37.87 E-value=26 Score=37.70 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhcCCccccchhHHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCC
Q 038017 229 CHSVLRELWNSFKELNLPSAMNMGLLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 229 ~~~~l~~l~~~l~~l~l~~~~~~~~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~ 295 (610)
|++...+|.....+..++...... ....+ +++|+||+.-..++. ..||++||||.--.+
T Consensus 157 clEl~~Rlk~aF~~~~I~~Lyg~S---~~~fr-~plvVaTtHQLlrFk----~aFD~liIDEVDAFP 215 (441)
T COG4098 157 CLELYPRLKQAFSNCDIDLLYGDS---DSYFR-APLVVATTHQLLRFK----QAFDLLIIDEVDAFP 215 (441)
T ss_pred hHHHHHHHHHhhccCCeeeEecCC---chhcc-ccEEEEehHHHHHHH----hhccEEEEecccccc
Confidence 455555555554444333222211 11223 899999987655432 379999999976543
No 255
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.87 E-value=19 Score=35.33 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~ 47 (213)
T cd03259 26 GEFLALLGPSGCGKTT--LLRLIA 47 (213)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 556654
No 256
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=37.78 E-value=21 Score=40.40 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEK 549 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~ 549 (610)
|.-+.|+||||+||+| +..++...|
T Consensus 364 GEkvAIlG~SGsGKST--llqLl~~~~ 388 (573)
T COG4987 364 GEKVAILGRSGSGKST--LLQLLAGAW 388 (573)
T ss_pred CCeEEEECCCCCCHHH--HHHHHHhcc
Confidence 4457899999999998 455554433
No 257
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=37.74 E-value=20 Score=35.18 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| ++|++.
T Consensus 26 G~~~~l~G~nGsGKST--Ll~~l~ 47 (213)
T cd03262 26 GEVVVIIGPSGSGKST--LLRCIN 47 (213)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999997 666664
No 258
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=37.74 E-value=18 Score=35.49 Aligned_cols=15 Identities=53% Similarity=0.587 Sum_probs=12.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.||+||||.+
T Consensus 9 i~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 9 IGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999854
No 259
>PRK13947 shikimate kinase; Provisional
Probab=37.72 E-value=19 Score=33.83 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.7
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
+.+++|.+|+||||..
T Consensus 3 ~I~l~G~~GsGKst~a 18 (171)
T PRK13947 3 NIVLIGFMGTGKTTVG 18 (171)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999865
No 260
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=37.67 E-value=19 Score=35.40 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++.+.++|++|+|||| ++|++.-
T Consensus 31 Ge~~~i~G~nGsGKST--Ll~~l~G 53 (218)
T cd03266 31 GEVTGLLGPNGAGKTT--TLRMLAG 53 (218)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 5677653
No 261
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=37.52 E-value=27 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.+.|.+||||||.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~ 43 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQR 43 (230)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 44577999999999997543
No 262
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.45 E-value=58 Score=35.76 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCCh
Q 038017 256 DFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~E 296 (610)
..+-+..+||++|+.....+. .+....+.++|||||=.+.+
T Consensus 128 ~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~ 171 (423)
T PRK04837 128 KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFD 171 (423)
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhh
Confidence 344456899999987654321 23345689999999987754
No 263
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=37.40 E-value=20 Score=35.52 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| +++++.-
T Consensus 31 Ge~~~i~G~nGsGKST--Ll~~l~G 53 (228)
T cd03257 31 GETLGLVGESGSGKST--LARAILG 53 (228)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457899999999998 6676653
No 264
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=37.38 E-value=20 Score=35.38 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-+.++|++|+|||| +++++.
T Consensus 30 G~~~~i~G~nGsGKST--Ll~~i~ 51 (220)
T cd03245 30 GEKVAIIGRVGSGKST--LLKLLA 51 (220)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4447799999999998 556654
No 265
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=37.36 E-value=21 Score=37.93 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=16.2
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+.-+.++|+||+|||| ++|+.
T Consensus 28 Ge~vaLlGpSGaGKsT--lLRiI 48 (345)
T COG1118 28 GELVALLGPSGAGKST--LLRII 48 (345)
T ss_pred CcEEEEECCCCCcHHH--HHHHH
Confidence 4457899999999998 44553
No 266
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=37.36 E-value=18 Score=34.98 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 25 Ge~~~l~G~nGsGKST--Ll~~l~ 46 (177)
T cd03222 25 GEVIGIVGPNGTGKTT--AVKILA 46 (177)
T ss_pred CCEEEEECCCCChHHH--HHHHHH
Confidence 3457799999999998 555554
No 267
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.31 E-value=25 Score=41.10 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| |+|++.-
T Consensus 27 Ge~v~LvG~NGsGKST--LLkiL~G 49 (638)
T PRK10636 27 GQKVGLVGKNGCGKST--LLALLKN 49 (638)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 3447789999999998 6777654
No 268
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=37.19 E-value=19 Score=34.71 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+++|+||+|||. +.+.+.
T Consensus 5 ~~ll~GpsGvGKT~--la~~la 24 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE--LAKALA 24 (171)
T ss_dssp EEEEESSTTSSHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 46789999999996 445554
No 269
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=37.08 E-value=20 Score=32.98 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 467899999999863
No 270
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.03 E-value=31 Score=34.20 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.+.+.|++|||||+-++.=++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Confidence 55688999999999987665444
No 271
>PRK14530 adenylate kinase; Provisional
Probab=36.96 E-value=20 Score=35.41 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.++++|.+|+||||.+
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 272
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.95 E-value=20 Score=35.95 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| ++|++.-
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~G 50 (239)
T cd03296 28 GELVALLGPSGSGKTT--LLRLIAG 50 (239)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4447799999999998 6666653
No 273
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.90 E-value=20 Score=39.53 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=14.1
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
++++.|++||||||.+-
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999998553
No 274
>PRK14531 adenylate kinase; Provisional
Probab=36.80 E-value=21 Score=34.34 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..+++|.+|+||||.+
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999963
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.72 E-value=21 Score=34.83 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 27 Ge~~~l~G~nGsGKST--Ll~~i~ 48 (200)
T PRK13540 27 GGLLHLKGSNGAGKTT--LLKLIA 48 (200)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 445543
No 276
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=36.65 E-value=27 Score=35.41 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
+.-..++|++|+||||.+-.=.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~ 46 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAIC 46 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4457899999999999754443
No 277
>PLN03073 ABC transporter F family; Provisional
Probab=36.57 E-value=26 Score=41.65 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=16.9
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+-..++|++|+|||| ++|++.
T Consensus 204 e~~gLvG~NGsGKST--LLr~l~ 224 (718)
T PLN03073 204 RHYGLVGRNGTGKTT--FLRYMA 224 (718)
T ss_pred CEEEEECCCCCCHHH--HHHHHc
Confidence 346789999999998 667765
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.37 E-value=21 Score=34.08 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-..++|++|+|||| ++|++.
T Consensus 26 G~~~~i~G~nGsGKST--Ll~~l~ 47 (178)
T cd03229 26 GEIVALLGPSGSGKST--LLRCIA 47 (178)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3446799999999998 666654
No 279
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=36.24 E-value=22 Score=37.95 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=18.3
Q ss_pred CceEEEccCCCCchhHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~ 545 (610)
-.+++.|.||+||||.+++--.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~I 111 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCI 111 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHH
Confidence 3578889999999999887654
No 280
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=36.21 E-value=24 Score=40.37 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=19.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+++..|.|+||+|||+ ++|++..
T Consensus 461 g~~LLItG~sG~GKtS--LlRvlgg 483 (659)
T KOG0060|consen 461 GQNLLITGPSGCGKTS--LLRVLGG 483 (659)
T ss_pred CCeEEEECCCCCchhH--HHHHHhc
Confidence 6789999999999996 7788764
No 281
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=36.13 E-value=21 Score=35.39 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~i~ 47 (227)
T cd03260 26 GEITALIGPSGCGKST--LLRLLN 47 (227)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4457799999999998 556654
No 282
>PRK14532 adenylate kinase; Provisional
Probab=36.06 E-value=21 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|.+|+||||.+
T Consensus 3 i~~~G~pGsGKsT~a 17 (188)
T PRK14532 3 LILFGPPAAGKGTQA 17 (188)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999864
No 283
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.94 E-value=21 Score=35.82 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|....++|++|+|||| ++|++.-
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~G 49 (242)
T cd03295 27 GEFLVLIGPSGSGKTT--TMKMINR 49 (242)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999998 6666643
No 284
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=35.88 E-value=25 Score=36.90 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=16.6
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-..++|++|+|||| ++|++.
T Consensus 32 ei~gllG~NGAGKTT--llk~l~ 52 (293)
T COG1131 32 EIFGLLGPNGAGKTT--LLKILA 52 (293)
T ss_pred eEEEEECCCCCCHHH--HHHHHh
Confidence 346789999999998 666664
No 285
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=35.87 E-value=21 Score=35.58 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~l~ 47 (236)
T cd03219 26 GEIHGLIGPNGAGKTT--LFNLIS 47 (236)
T ss_pred CcEEEEECCCCCCHHH--HHHHHc
Confidence 3346799999999998 666654
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.86 E-value=22 Score=34.94 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~ 49 (207)
T PRK13539 28 GEALVLTGPNGSGKTT--LLRLIA 49 (207)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3446799999999998 455554
No 287
>PRK01184 hypothetical protein; Provisional
Probab=35.77 E-value=21 Score=34.14 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.4
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+++.|.+|+||||.+ ++++.
T Consensus 4 i~l~G~~GsGKsT~a--~~~~~ 23 (184)
T PRK01184 4 IGVVGMPGSGKGEFS--KIARE 23 (184)
T ss_pred EEEECCCCCCHHHHH--HHHHH
Confidence 568999999999965 45543
No 288
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=35.75 E-value=24 Score=35.65 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-..++|++|+|||| ++|++.-
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~l~G 51 (253)
T TIGR02323 29 GEVLGIVGESGSGKST--LLGCLAG 51 (253)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 4457899999999998 6666543
No 289
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=35.73 E-value=23 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.0
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
..++.|++|||||+.+.
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 290
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=35.61 E-value=29 Score=33.19 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=19.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-+++.|++|+|||+.++.-.+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~ 55 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAA 55 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 445889999999999987766653
No 291
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=35.59 E-value=22 Score=35.58 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 11 Ge~~~i~G~nGsGKST--Ll~~l~ 32 (230)
T TIGR01184 11 GEFISLIGHSGCGKST--LLNLIS 32 (230)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 566654
No 292
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=35.47 E-value=23 Score=34.64 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=14.2
Q ss_pred CceEEEccCCCCchhHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~ 545 (610)
..++++|++|+|||+ ++++|-
T Consensus 4 ~~vlL~Gps~SGKTa-Lf~~L~ 24 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTA-LFSQLV 24 (181)
T ss_dssp -EEEEE-STTSSHHH-HHHHHH
T ss_pred ceEEEEcCCCCCHHH-HHHHHh
Confidence 357899999999995 444444
No 293
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=35.46 E-value=22 Score=35.60 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| ++|++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (236)
T TIGR03864 27 GEFVALLGPNGAGKST--LFSLLT 48 (236)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666654
No 294
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=35.37 E-value=21 Score=38.54 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 30 Ge~~~llG~sGsGKST--LLr~ia 51 (356)
T PRK11650 30 GEFIVLVGPSGCGKST--LLRMVA 51 (356)
T ss_pred CCEEEEECCCCCcHHH--HHHHHH
Confidence 3446799999999998 666664
No 295
>PTZ00424 helicase 45; Provisional
Probab=35.36 E-value=73 Score=34.35 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCCh
Q 038017 256 DFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~E 296 (610)
..+...++||++|+.....+. ......+++||||||=.+..
T Consensus 141 ~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 141 NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 445567899999987654321 12345789999999976543
No 296
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=35.34 E-value=21 Score=38.46 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 30 Ge~~~l~GpsGsGKST--LLr~ia 51 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTT--LLRIIA 51 (353)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 3457789999999998 667665
No 297
>PRK08727 hypothetical protein; Validated
Probab=35.19 E-value=23 Score=35.73 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.2
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|.+|||||..+
T Consensus 43 ~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 43 WLYLSGPAGTGKTHLA 58 (233)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999543
No 298
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=35.17 E-value=22 Score=35.29 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++...++|++|+|||| ++|++.
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~l~ 47 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTT--LLKTLM 47 (230)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999997 566665
No 299
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=35.11 E-value=24 Score=40.25 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.0
Q ss_pred eEEEccCCCCchhHHHHHHHHHhHhh
Q 038017 526 TFILGRSGTGKTTILTMKLFQNEKHH 551 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~e~~~ 551 (610)
.++-|++|+||||+ .|++.+|.-+
T Consensus 48 LlLtGP~G~GKttt--v~~La~elg~ 71 (519)
T PF03215_consen 48 LLLTGPSGCGKTTT--VKVLAKELGF 71 (519)
T ss_pred EEEECCCCCCHHHH--HHHHHHHhCC
Confidence 56789999999994 4788877544
No 300
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=35.10 E-value=21 Score=35.14 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~ 47 (222)
T cd03224 26 GEIVALLGRNGAGKTT--LLKTIM 47 (222)
T ss_pred CeEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 556654
No 301
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=35.08 E-value=22 Score=35.84 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| +++++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~i~ 54 (252)
T CHL00131 33 GEIHAIMGPNGSGKST--LSKVIA 54 (252)
T ss_pred CcEEEEECCCCCCHHH--HHHHHc
Confidence 4457799999999998 445654
No 302
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=35.04 E-value=23 Score=34.74 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-..++|++|+|||| ++|++.-
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~l~G 48 (213)
T cd03301 26 GEFVVLLGPSGCGKTT--TLRMIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3446799999999998 5666653
No 303
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=34.96 E-value=23 Score=35.60 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|....++|++|+|||| ++|++.
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~ 49 (242)
T PRK11124 28 GETLVLLGPSGAGKSS--LLRVLN 49 (242)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4447789999999997 666664
No 304
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.96 E-value=29 Score=36.84 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-.-++|+||.||+| |.|+++
T Consensus 32 GeI~GIIG~SGAGKST--LiR~iN 53 (339)
T COG1135 32 GEIFGIIGYSGAGKST--LLRLIN 53 (339)
T ss_pred CcEEEEEcCCCCcHHH--HHHHHh
Confidence 3335599999999998 677765
No 305
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=34.96 E-value=23 Score=35.45 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 35 Ge~~~l~G~nGsGKST--Ll~~l~ 56 (233)
T PRK11629 35 GEMMAIVGSSGSGKST--LLHLLG 56 (233)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666654
No 306
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=34.94 E-value=23 Score=35.14 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+.+.++|++|+|||| +++++.
T Consensus 40 Ge~~~i~G~nGsGKST--Ll~~l~ 61 (226)
T cd03248 40 GEVTALVGPSGSGKST--VVALLE 61 (226)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4557899999999998 556654
No 307
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=34.93 E-value=23 Score=35.42 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~ 47 (243)
T TIGR01978 26 GEIHAIMGPNGSGKST--LSKTIA 47 (243)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 308
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=34.81 E-value=59 Score=38.83 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=46.5
Q ss_pred eChhhceEE---EcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMI---LFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI---~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.| .-++++++..+.|+|||.+.++-+++.= .. . . ..+
T Consensus 37 p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l-----~~-----~-~----------------------~~~ 83 (742)
T TIGR03817 37 PWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSAL-----AD-----D-P----------------------RAT 83 (742)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHH-----hh-----C-C----------------------CcE
Confidence 444444433 3377899999999999999998887531 10 0 0 145
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-||++...-|++++.+.+.++
T Consensus 84 aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 84 ALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred EEEEcChHHHHHHHHHHHHHh
Confidence 699999999999999887664
No 309
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=34.76 E-value=21 Score=35.74 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.2
Q ss_pred EEEccCCCCchhHH
Q 038017 527 FILGRSGTGKTTIL 540 (610)
Q Consensus 527 ~vlGrSgtgktt~~ 540 (610)
-+.|.+|+||||.+
T Consensus 3 gI~G~sGSGKTTla 16 (220)
T cd02025 3 GIAGSVAVGKSTTA 16 (220)
T ss_pred EeeCCCCCCHHHHH
Confidence 47899999999976
No 310
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=34.69 E-value=23 Score=35.23 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=16.6
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-..++|++|+|||| ++|++.
T Consensus 27 e~~~l~G~nGsGKST--Ll~~l~ 47 (232)
T cd03218 27 EIVGLLGPNGAGKTT--TFYMIV 47 (232)
T ss_pred cEEEEECCCCCCHHH--HHHHHh
Confidence 346789999999998 666664
No 311
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.65 E-value=23 Score=35.65 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~l~ 50 (241)
T PRK14250 29 GAIYTIVGPSGAGKST--LIKLIN 50 (241)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999997 666665
No 312
>PRK10908 cell division protein FtsE; Provisional
Probab=34.65 E-value=23 Score=35.01 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+....++|++|+|||| ++|++.
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~ 49 (222)
T PRK10908 28 GEMAFLTGHSGAGKST--LLKLIC 49 (222)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 313
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.65 E-value=22 Score=34.80 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=15.8
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-..++|++|+|||| +++++.
T Consensus 27 ~~~i~G~nGsGKST--Ll~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTT--LMRILA 46 (211)
T ss_pred cEEEECCCCCCHHH--HHHHHh
Confidence 36789999999998 566654
No 314
>PHA02558 uvsW UvsW helicase; Provisional
Probab=34.57 E-value=22 Score=40.28 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.0
Q ss_pred cCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhH
Q 038017 260 TKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 260 ~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e 298 (610)
..+.|+++|..+..+........|++||||||-.+....
T Consensus 200 ~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~ 238 (501)
T PHA02558 200 TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKS 238 (501)
T ss_pred CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchh
Confidence 457899999877554322123579999999999987543
No 315
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.39 E-value=23 Score=35.80 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-..++|++|+|||| +++++.-
T Consensus 30 Ge~~~l~G~nGsGKST--Ll~~l~G 52 (253)
T PRK14267 30 NGVFALMGPSGCGKST--LLRTFNR 52 (253)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 3346799999999998 6666653
No 316
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.37 E-value=26 Score=36.27 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.|+|++|+|||| +++++.
T Consensus 47 Ge~~~I~G~nGsGKST--Ll~~l~ 68 (276)
T PRK14271 47 RAVTSLMGPTGSGKTT--FLRTLN 68 (276)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666664
No 317
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=34.37 E-value=22 Score=34.53 Aligned_cols=14 Identities=57% Similarity=0.714 Sum_probs=12.0
Q ss_pred EEEccCCCCchhHH
Q 038017 527 FILGRSGTGKTTIL 540 (610)
Q Consensus 527 ~vlGrSgtgktt~~ 540 (610)
.|.|.||+||||.+
T Consensus 3 gI~G~sgSGKTTla 16 (194)
T PF00485_consen 3 GIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 47899999999965
No 318
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=34.33 E-value=26 Score=35.58 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-..++|++|+|||| ++|++.-
T Consensus 32 Ge~~~i~G~nGsGKST--Ll~~l~G 54 (258)
T PRK11701 32 GEVLGIVGESGSGKTT--LLNALSA 54 (258)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4557899999999998 6666653
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=34.26 E-value=25 Score=32.56 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=16.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|++|+|||| +++++.
T Consensus 26 Ge~~~i~G~nGsGKSt--Ll~~l~ 47 (144)
T cd03221 26 GDRIGLVGRNGAGKST--LLKLIA 47 (144)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 3457799999999997 555553
No 320
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.20 E-value=24 Score=35.67 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| +++++.-
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~i~G 51 (250)
T PRK14247 29 NTITALMGPSGSGKST--LLRVFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 3347799999999998 6666653
No 321
>PLN03025 replication factor C subunit; Provisional
Probab=34.16 E-value=25 Score=37.16 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=13.6
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
.++.|++||||||.+.
T Consensus 37 lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 37 LILSGPPGTGKTTSIL 52 (319)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998654
No 322
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=34.16 E-value=23 Score=33.80 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHhcCCeEEEEcccccchh---ccc--ccCCCcEEEEecCCCCChh
Q 038017 254 LKDFCFTKASLIFCTASSSYKL---HSV--AMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l---~~~--~~~~fD~vIIDEAsQ~~E~ 297 (610)
..+.....|+||+++-+-.... ..+ -...-.+||||||=.+...
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 4567888999999994432211 011 1234579999999887653
No 323
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=34.08 E-value=25 Score=33.60 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++-+.++|++|+|||| ++|++.-
T Consensus 28 Ge~~~i~G~nGsGKSt--Ll~~l~G 50 (178)
T cd03247 28 GEKIALLGRSGSGKST--LLQLLTG 50 (178)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999997 6666643
No 324
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=33.94 E-value=25 Score=33.19 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~i~ 47 (163)
T cd03216 26 GEVHALLGENGAGKST--LMKILS 47 (163)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 325
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=33.84 E-value=25 Score=41.77 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHhcC--CeEEEEcccccchhcccccCCCcEEEEecCCCCCh
Q 038017 255 KDFCFTK--ASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 255 ~~~il~~--a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E 296 (610)
....+.. ++-+++...|..++..-....+|+|||||+.|+..
T Consensus 113 ~~~~i~~~~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~ 156 (824)
T PF02399_consen 113 DDYIIDGRPYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLN 156 (824)
T ss_pred ccccccccccCeEEEEehhhhhcccccccccCEEEEehHHHHHH
Confidence 3334443 45566666666655432234699999999988753
No 326
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=33.83 E-value=24 Score=35.32 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.6
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.-+.++|+||+||||.+
T Consensus 22 e~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 22 KLVVITGVSGSGKSSLA 38 (226)
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34778999999999986
No 327
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.83 E-value=24 Score=35.05 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=14.0
Q ss_pred eEEEccCCCCchhHHHH
Q 038017 526 TFILGRSGTGKTTILTM 542 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~ 542 (610)
..++|++|+||||.+-.
T Consensus 28 ~~ivGpNGaGKSTll~~ 44 (212)
T cd03274 28 SAIVGPNGSGKSNVIDS 44 (212)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56899999999996544
No 328
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=33.81 E-value=24 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.++|.+++||||.+
T Consensus 3 v~VvG~~~sGKTTl~ 17 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLI 17 (140)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999999854
No 329
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.77 E-value=24 Score=36.67 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| ++|++.-
T Consensus 37 Ge~~~l~G~nGsGKST--Ll~~l~G 59 (289)
T PRK13645 37 NKVTCVIGTTGSGKST--MIQLTNG 59 (289)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999998 6666643
No 330
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=33.70 E-value=24 Score=40.17 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+.++++.|++|||||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 55688999999999974
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=33.70 E-value=24 Score=35.87 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-+.++|++|+|||| ++|++.-
T Consensus 25 Ge~~~i~G~NGsGKST--Llk~L~G 47 (246)
T cd03237 25 SEVIGILGPNGIGKTT--FIKMLAG 47 (246)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 3447799999999998 5666653
No 332
>PRK08116 hypothetical protein; Validated
Probab=33.66 E-value=58 Score=33.68 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.5
Q ss_pred ceEEEccCCCCchh
Q 038017 525 STFILGRSGTGKTT 538 (610)
Q Consensus 525 s~~vlGrSgtgktt 538 (610)
++++.|.+|||||.
T Consensus 116 gl~l~G~~GtGKTh 129 (268)
T PRK08116 116 GLLLWGSVGTGKTY 129 (268)
T ss_pred eEEEECCCCCCHHH
Confidence 48899999999985
No 333
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.65 E-value=25 Score=34.78 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-..++|++|+|||| ++|++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~i~ 47 (220)
T cd03265 26 GEIFGLLGPNGAGKTT--TIKMLT 47 (220)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3346799999999998 666664
No 334
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.62 E-value=25 Score=34.43 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-+.++|++|+|||| +++++.-
T Consensus 27 Ge~~~l~G~nGsGKST--Ll~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTS--LLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3347799999999998 6666543
No 335
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.58 E-value=30 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 32 Ge~v~i~G~nGsGKST--Ll~~l~ 53 (288)
T PRK13643 32 GSYTALIGHTGSGKST--LLQHLN 53 (288)
T ss_pred CCEEEEECCCCChHHH--HHHHHh
Confidence 4457899999999998 667765
No 336
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=33.56 E-value=25 Score=34.40 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-..++|++|+|||| +++++.
T Consensus 26 G~~~~i~G~nGsGKST--Ll~~l~ 47 (208)
T cd03268 26 GEIYGFLGPNGAGKTT--TMKIIL 47 (208)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 337
>PRK00889 adenylylsulfate kinase; Provisional
Probab=33.52 E-value=24 Score=33.53 Aligned_cols=16 Identities=50% Similarity=0.754 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|.+|+||||.+
T Consensus 6 ~i~~~G~~GsGKST~a 21 (175)
T PRK00889 6 TVWFTGLSGAGKTTIA 21 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999965
No 338
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=33.49 E-value=24 Score=38.05 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|..|+||||.+
T Consensus 162 ~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred CCeEEEECCCCccHHHHH
Confidence 567889999999999965
No 339
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=33.48 E-value=27 Score=44.86 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=27.3
Q ss_pred CcEEEEecCCCCChhHHHhhcc--CcCcceEEEeCCCCcCCc
Q 038017 283 LKFLVIDEAAQLKESESAIPLQ--LPCIQHAILVGDECQLPA 322 (610)
Q Consensus 283 fD~vIIDEAsQ~~E~e~lipL~--~~~~k~~ILvGD~~QLpP 322 (610)
=+++|||||+++.--+..--+. ....-| |++||.+|+..
T Consensus 369 ~~ilIVDEA~~Ls~rdm~~Ll~~A~~~gar-VllgD~~Q~~a 409 (1623)
T PRK14712 369 GSTVIVDQGEKLSLKETLTLLDGAARHNVQ-VLITDSGQRTG 409 (1623)
T ss_pred CcEEEEECCCcCCHHHHHHHHHHHHhcCCE-EEEEechhhhh
Confidence 3899999999999766444333 222245 77889999954
No 340
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=33.47 E-value=24 Score=38.09 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 32 Ge~~~llGpsGsGKST--LLr~Ia 53 (351)
T PRK11432 32 GTMVTLLGPSGCGKTT--VLRLVA 53 (351)
T ss_pred CCEEEEECCCCCcHHH--HHHHHH
Confidence 3347789999999998 566664
No 341
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=33.39 E-value=27 Score=34.66 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=16.7
Q ss_pred CceEEEccCCCCchhHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl 544 (610)
.-+.+.|++|+|||+.++.-.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999776554
No 342
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.37 E-value=26 Score=38.93 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.1
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+..+.++|++|+||||++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3456778999999999765
No 343
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=33.29 E-value=25 Score=35.28 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-+.++|++|+|||| ++|++.-
T Consensus 29 Ge~~~l~G~nGsGKST--Ll~~l~G 51 (241)
T PRK10895 29 GEIVGLLGPNGAGKTT--TFYMVVG 51 (241)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 6677653
No 344
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.29 E-value=27 Score=35.03 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=14.9
Q ss_pred CceEEEccCCCCchhHHHH
Q 038017 524 RSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~ 542 (610)
.-..++|++|+||||.+-.
T Consensus 24 ~~~~i~GpNGsGKStll~a 42 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAA 42 (243)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3467899999999996433
No 345
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=33.28 E-value=34 Score=33.56 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-..++|++|+||||.+
T Consensus 24 ~~~i~G~nGsGKStll 39 (197)
T cd03278 24 LTAIVGPNGSGKSNII 39 (197)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3568999999999855
No 346
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=33.28 E-value=25 Score=35.89 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (255)
T PRK11248 27 GELLVVLGPSGCGKTT--LLNLIA 48 (255)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 347
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=33.18 E-value=28 Score=35.16 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 32 Ge~~~i~G~nGsGKST--Ll~~l~ 53 (253)
T PRK14242 32 NQVTALIGPSGCGKST--FLRCLN 53 (253)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4447799999999998 666664
No 348
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=33.17 E-value=25 Score=34.85 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| |++++.
T Consensus 36 Ge~~~i~G~nGsGKST--Ll~~i~ 57 (228)
T PRK10584 36 GETIALIGESGSGKST--LLAILA 57 (228)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4557899999999998 666665
No 349
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=33.12 E-value=25 Score=35.06 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+...++|++|+|||| ++|++.
T Consensus 25 Ge~~~l~G~nGsGKST--Ll~~l~ 46 (232)
T PRK10771 25 GERVAILGPSGAGKST--LLNLIA 46 (232)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666654
No 350
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=33.12 E-value=25 Score=35.96 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| ++|++.
T Consensus 37 Ge~~~i~G~nGsGKST--Ll~~l~ 58 (265)
T PRK10575 37 GKVTGLIGHNGSGKST--LLKMLG 58 (265)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 4457799999999998 566654
No 351
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.10 E-value=25 Score=34.66 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-+.++|++|+|||| ++|++.
T Consensus 37 Ge~~~i~G~nGsGKST--Ll~~i~ 58 (214)
T PRK13543 37 GEALLVQGDNGAGKTT--LLRVLA 58 (214)
T ss_pred CCEEEEEcCCCCCHHH--HHHHHh
Confidence 4457799999999998 666654
No 352
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=33.07 E-value=25 Score=35.54 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|....++|++|+|||| ++|++.-
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~G 48 (252)
T TIGR03005 26 GEKVALIGPSGSGKST--ILRILMT 48 (252)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 6676653
No 353
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=33.02 E-value=26 Score=33.62 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+....++|++|+|||| ++|++.-
T Consensus 26 G~~~~i~G~nGsGKST--Ll~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTE--LAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 6666653
No 354
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=33.00 E-value=25 Score=35.20 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| ++|++.
T Consensus 27 Ge~~~l~G~nGsGKST--Ll~~l~ 48 (240)
T PRK09493 27 GEVVVIIGPSGSGKST--LLRCIN 48 (240)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3346799999999997 566654
No 355
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=32.98 E-value=26 Score=34.91 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+....++|++|+|||| +++++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~ 54 (225)
T PRK10247 33 GEFKLITGPSGCGKST--LLKIVA 54 (225)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 356
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=32.95 E-value=26 Score=31.57 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=15.5
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.++|++|+|||+. +.++...
T Consensus 3 v~liG~~~vGKSsL-~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTL-TQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHH-HHHHcCC
Confidence 57899999999964 4555443
No 357
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.91 E-value=26 Score=35.81 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-+.++|++|+|||| +++++.
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~i~ 49 (258)
T PRK13548 28 GEVVAILGPNGAGKST--LLRALS 49 (258)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 358
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=32.91 E-value=22 Score=37.20 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=28.6
Q ss_pred cccceeeChhhceEEEc-------CCceEEEccCCCCchhHHHHHHHH
Q 038017 506 LDLPFEVTDEQLEMILF-------PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 506 ~dlnfavTr~e~~vI~~-------~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+||.-.+.|.+++.. +...++-+++|||||.+.+.-.+.
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 34666666666553332 556788889999999999887753
No 359
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=32.91 E-value=22 Score=37.20 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=28.6
Q ss_pred cccceeeChhhceEEEc-------CCceEEEccCCCCchhHHHHHHHH
Q 038017 506 LDLPFEVTDEQLEMILF-------PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 506 ~dlnfavTr~e~~vI~~-------~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+||.-.+.|.+++.. +...++-+++|||||.+.+.-.+.
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 34666666666553332 556788889999999999887753
No 360
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=32.89 E-value=26 Score=31.42 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=11.9
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+|||+.
T Consensus 2 i~i~G~~~~GKssl 15 (159)
T cd04159 2 ITLVGLQNSGKTTL 15 (159)
T ss_pred EEEEcCCCCCHHHH
Confidence 46899999999974
No 361
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=32.83 E-value=27 Score=41.00 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|+||+|||| +.|++..
T Consensus 479 Ge~vaIvG~sGsGKST--LlklL~g 501 (686)
T TIGR03797 479 GEFVAIVGPSGSGKST--LLRLLLG 501 (686)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 5568899999999998 6677654
No 362
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=32.79 E-value=25 Score=31.89 Aligned_cols=19 Identities=32% Similarity=0.753 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||- +.++.
T Consensus 4 i~iiG~~~vGKTsl-~~~~~ 22 (162)
T cd04138 4 LVVVGAGGVGKSAL-TIQLI 22 (162)
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57899999999973 34443
No 363
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=32.76 E-value=26 Score=36.42 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=32.4
Q ss_pred cccccccccccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceEEEccCCCCchhHHHHH
Q 038017 464 AAFDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMK 543 (610)
Q Consensus 464 ~tvD~~qg~e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~k 543 (610)
.|+|.-.|+|.-. +.+-++|.+-.+.+ .|-+.. |.+++..|++|||||. +.|
T Consensus 118 it~ddViGqEeAK-~kcrli~~yLenPe----~Fg~WA---------------------PknVLFyGppGTGKTm--~Ak 169 (368)
T COG1223 118 ITLDDVIGQEEAK-RKCRLIMEYLENPE----RFGDWA---------------------PKNVLFYGPPGTGKTM--MAK 169 (368)
T ss_pred ccHhhhhchHHHH-HHHHHHHHHhhChH----HhcccC---------------------cceeEEECCCCccHHH--HHH
Confidence 4677777776332 45556666544433 121111 4456778999999994 444
Q ss_pred HHHH
Q 038017 544 LFQN 547 (610)
Q Consensus 544 l~~~ 547 (610)
-+..
T Consensus 170 alan 173 (368)
T COG1223 170 ALAN 173 (368)
T ss_pred HHhc
Confidence 4443
No 364
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.74 E-value=33 Score=38.86 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=19.9
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHHhH
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQNEK 549 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~e~ 549 (610)
.+.++++.|++|||||. +.|-+..++
T Consensus 258 ~pkGILL~GPpGTGKTl--lAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSL--TAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHH--HHHHHHHHh
Confidence 35678999999999995 446666654
No 365
>PRK12377 putative replication protein; Provisional
Probab=32.71 E-value=26 Score=35.91 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.8
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||..+
T Consensus 102 ~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999643
No 366
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.70 E-value=24 Score=38.66 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.7
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..+++|+.|+||||++
T Consensus 176 vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 176 VFILVGPTGVGKTTTI 191 (388)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567999999999977
No 367
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.62 E-value=26 Score=35.41 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| +++++.
T Consensus 31 Ge~~~l~G~nGsGKST--Ll~~l~ 52 (252)
T PRK14255 31 NEITALIGPSGCGKST--YLRTLN 52 (252)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 666664
No 368
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.58 E-value=34 Score=33.88 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+..+.+.|.+|+|||+.++.-.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999998765443
No 369
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.52 E-value=39 Score=32.16 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=16.9
Q ss_pred eEEEccCCCCchhHHHHHHHHHhH
Q 038017 526 TFILGRSGTGKTTILTMKLFQNEK 549 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~e~ 549 (610)
..++|++||||. |++.+..++.|
T Consensus 12 fl~iG~aGtGKS-CLLh~Fie~kf 34 (214)
T KOG0086|consen 12 FLVIGSAGTGKS-CLLHQFIENKF 34 (214)
T ss_pred eEEeccCCCChh-HHHHHHHHhhh
Confidence 578999999996 66666655433
No 370
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=32.48 E-value=26 Score=30.62 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=11.6
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|++|+||+|
T Consensus 2 V~iiG~~~~GKST 14 (116)
T PF01926_consen 2 VAIIGRPNVGKST 14 (116)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4689999999997
No 371
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=32.46 E-value=26 Score=35.58 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|++|+|||| +++++.-
T Consensus 31 Ge~~~l~G~nGsGKST--Ll~~i~G 53 (257)
T PRK10619 31 GDVISIIGSSGSGKST--FLRCINF 53 (257)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 5566543
No 372
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=32.45 E-value=14 Score=42.18 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=25.0
Q ss_pred cceeeChhhceEEEcC----CceEEEccCCCCchhHHHHH
Q 038017 508 LPFEVTDEQLEMILFP----RSTFILGRSGTGKTTILTMK 543 (610)
Q Consensus 508 lnfavTr~e~~vI~~~----~s~~vlGrSgtgktt~~~~k 543 (610)
+|..+.+.|++.|.+. .-.++-|+.|||||++...=
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEi 221 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEI 221 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHH
Confidence 5556666666655552 34688999999999876543
No 373
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=32.39 E-value=27 Score=37.23 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|.||+|||| ++|++.
T Consensus 33 Ge~~~ivG~sGsGKST--Ll~~i~ 54 (330)
T PRK15093 33 GEIRGLVGESGSGKSL--IAKAIC 54 (330)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4457899999999998 555553
No 374
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=32.35 E-value=97 Score=38.03 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=40.6
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
.+++|+.+.|+|||..+.+=++..-.. +.. . |.-+..-.+-|||...--||.|+-
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~------~~~-----~--------------~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 127 ENMLICAPTGSGKTVLAELCILRTIKE------HEE-----Q--------------GDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHh------hcc-----c--------------cccccCCceEEEEechHHHHHHHH
Confidence 368999999999999887777653211 111 0 111111267799999999999998
Q ss_pred HHhh
Q 038017 604 QHIS 607 (610)
Q Consensus 604 ~~~~ 607 (610)
+.|.
T Consensus 182 ~~~~ 185 (1230)
T KOG0952|consen 182 DKFS 185 (1230)
T ss_pred HHHh
Confidence 8774
No 375
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.34 E-value=26 Score=35.93 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-+.++|++|+|||| +++++.-
T Consensus 35 Ge~~~I~G~nGsGKST--Ll~~i~G 57 (269)
T PRK13648 35 GQWTSIVGHNGSGKST--IAKLMIG 57 (269)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 3446799999999998 5677653
No 376
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=32.32 E-value=26 Score=37.74 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 24 Ge~~~l~G~nGsGKST--Ll~~ia 45 (352)
T PRK11144 24 QGITAIFGRSGAGKTS--LINAIS 45 (352)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666664
No 377
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=32.32 E-value=26 Score=35.53 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+.+.++|++|+|||| +++++.
T Consensus 29 Ge~~~l~G~nGsGKST--Ll~~l~ 50 (254)
T PRK10418 29 GRVLALVGGSGSGKSL--TCAAAL 50 (254)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 378
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.29 E-value=30 Score=34.09 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.+.|++|+|||+.++.-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHH
Confidence 3457789999999999877544
No 379
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=32.25 E-value=26 Score=31.98 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=14.0
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||| ++.++.
T Consensus 3 v~v~G~~~~GKTt-li~~l~ 21 (164)
T smart00175 3 IILIGDSGVGKSS-LLSRFT 21 (164)
T ss_pred EEEECCCCCCHHH-HHHHHh
Confidence 5789999999997 333443
No 380
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=32.24 E-value=28 Score=33.97 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 31 G~~~~i~G~nG~GKST--Ll~~i~ 52 (204)
T cd03250 31 GELVAIVGPVGSGKSS--LLSALL 52 (204)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 555543
No 381
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.22 E-value=31 Score=40.46 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=19.9
Q ss_pred cceeeChhhceEEEcCCceEEEccCCCCchhHHH
Q 038017 508 LPFEVTDEQLEMILFPRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 508 lnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~ 541 (610)
++|-+.| |..+.++|+||.||+|+.-
T Consensus 487 lsfti~p--------Ge~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 487 LSFTIRP--------GEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred ceeeeCC--------CCEEEEECCCCCCHHHHHH
Confidence 5665555 5568899999999999753
No 382
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=32.17 E-value=18 Score=34.26 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.7
Q ss_pred EccCCCCchhHHH
Q 038017 529 LGRSGTGKTTILT 541 (610)
Q Consensus 529 lGrSgtgktt~~~ 541 (610)
+|.||+||||.+-
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 5999999999653
No 383
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.10 E-value=27 Score=35.82 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| ++|++.
T Consensus 47 Ge~~~i~G~nGsGKST--Ll~~l~ 68 (268)
T PRK14248 47 HAVTALIGPSGCGKST--FLRSIN 68 (268)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 3447799999999998 566654
No 384
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.02 E-value=27 Score=34.61 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-+.++|++|+|||| ++|++.-
T Consensus 29 G~~~~i~G~nGsGKST--Ll~~l~G 51 (229)
T cd03254 29 GETVAIVGPTGAGKTT--LINLLMR 51 (229)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 3447799999999998 6666653
No 385
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=32.02 E-value=35 Score=34.02 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.++|.|++|+|||+-++.-++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~ 35 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAE 35 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34577899999999987665444
No 386
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=32.01 E-value=27 Score=35.76 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 37 Ge~~~i~G~nGsGKST--Ll~~l~ 58 (265)
T TIGR02769 37 GETVGLLGRSGCGKST--LARLLL 58 (265)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.96 E-value=28 Score=33.00 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-..++|++|+|||| ++|++.-
T Consensus 28 G~~~~l~G~nGsGKst--Ll~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKST--LLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHc
Confidence 4457799999999997 6677653
No 388
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=31.93 E-value=32 Score=38.82 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 31 Ge~~~l~G~nGsGKST--Ll~~l~ 52 (506)
T PRK13549 31 GEIVSLCGENGAGKST--LMKVLS 52 (506)
T ss_pred CeEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666664
No 389
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=31.92 E-value=27 Score=34.81 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++.+.++|++|+|||| ++|++.-
T Consensus 12 Ge~~~i~G~nGsGKST--Ll~~l~G 34 (230)
T TIGR02770 12 GEVLALVGESGSGKSL--TCLAILG 34 (230)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4447799999999998 6677653
No 390
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=31.90 E-value=27 Score=35.95 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~l~G~nGsGKST--Ll~~l~ 54 (272)
T PRK15056 33 GSIAALVGVNGSGKST--LFKALM 54 (272)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 391
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=31.82 E-value=99 Score=34.45 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=41.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.+++.-.|.|+|||...+.-|+++=..+... +. .+++ +.-|-+....-||+||
T Consensus 56 gKDvvarArTGSGKT~AYliPllqkll~~k~t-----~~-----------~e~~----------~sa~iLvPTkEL~qQv 109 (569)
T KOG0346|consen 56 GKDVVARARTGSGKTAAYLIPLLQKLLAEKKT-----ND-----------GEQG----------PSAVILVPTKELAQQV 109 (569)
T ss_pred CcceeeeeccCCCchHHHHHHHHHHHHHhhhc-----cc-----------cccc----------ceeEEEechHHHHHHH
Confidence 45566678899999999999998764332111 01 1111 3347778899999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+-+++|
T Consensus 110 y~viekL 116 (569)
T KOG0346|consen 110 YKVIEKL 116 (569)
T ss_pred HHHHHHH
Confidence 9988765
No 392
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=31.82 E-value=27 Score=35.18 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (247)
T TIGR00972 27 NQVTALIGPSGCGKST--LLRSLN 48 (247)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 393
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=31.78 E-value=28 Score=32.41 Aligned_cols=14 Identities=57% Similarity=0.812 Sum_probs=12.3
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+||||.
T Consensus 17 v~i~G~~g~GKStL 30 (173)
T cd04155 17 ILILGLDNAGKTTI 30 (173)
T ss_pred EEEEccCCCCHHHH
Confidence 67899999999974
No 394
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=31.77 E-value=34 Score=36.03 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+-+.|.+|+||||.+
T Consensus 65 IGIaG~~GSGKSTla 79 (290)
T TIGR00554 65 ISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999999977
No 395
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=31.75 E-value=28 Score=33.43 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=18.1
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHHh
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
++...++.|.||+||+|.. +++..+
T Consensus 11 ~k~~i~vmGvsGsGKSTig--k~L~~~ 35 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIG--KALSEE 35 (191)
T ss_pred CceeEEEEecCCCChhhHH--HHHHHH
Confidence 3455788999999999954 555544
No 396
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.72 E-value=28 Score=40.79 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=16.4
Q ss_pred CceEEEccCCCCchhHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl 544 (610)
+.++|.|+.|||||++...-.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 347799999999998776433
No 397
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=31.71 E-value=27 Score=31.66 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=11.5
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|.+|+||||
T Consensus 2 i~l~G~~g~GKTt 14 (170)
T cd01876 2 IAFAGRSNVGKSS 14 (170)
T ss_pred EEEEcCCCCCHHH
Confidence 4689999999996
No 398
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=31.70 E-value=27 Score=38.60 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=16.0
Q ss_pred EcCCceEEEccCCCCchhHH
Q 038017 521 LFPRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 521 ~~~~s~~vlGrSgtgktt~~ 540 (610)
....++++.|++|||||+.+
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLA 125 (412)
T ss_pred cCCceEEEEcCCCCCHHHHH
Confidence 34567889999999999854
No 399
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.69 E-value=21 Score=38.71 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=23.7
Q ss_pred cceeeChhhceEEEcCCceEEEccCCCCchhHHHHHHHHH
Q 038017 508 LPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 508 lnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
||..++.--+++ |--..||||||+++.+-|+.+
T Consensus 121 LPlll~~Pp~nl-------IaQsqsGtGKTaaFvL~MLsr 153 (477)
T KOG0332|consen 121 LPLLLAEPPQNL-------IAQSQSGTGKTAAFVLTMLSR 153 (477)
T ss_pred cchhhcCCchhh-------hhhhcCCCchhHHHHHHHHHh
Confidence 555555544444 444778999999999999875
No 400
>PRK02496 adk adenylate kinase; Provisional
Probab=31.65 E-value=28 Score=33.36 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|.+|+||||.+
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999843
No 401
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=31.65 E-value=37 Score=34.24 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.+.|++|+|||+-++.=+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l 42 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFL 42 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4567889999999998665433
No 402
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.63 E-value=30 Score=35.09 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+.+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~ 54 (254)
T PRK14273 33 NSITALIGPSGCGKST--FLRTLN 54 (254)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 403
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.62 E-value=28 Score=35.19 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|....++|++|+|||| ++|++.-
T Consensus 30 Ge~~~i~G~nGsGKST--Ll~~l~G 52 (251)
T PRK14251 30 KELTALIGPSGCGKST--FLRCLNR 52 (251)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhh
Confidence 4446799999999997 6666653
No 404
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.56 E-value=31 Score=34.82 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKST--FLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4557899999999998 566654
No 405
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=31.47 E-value=29 Score=35.84 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-+.++|++|+|||| ++|++.
T Consensus 27 Ge~~~l~G~nGsGKST--Ll~~la 48 (272)
T PRK13547 27 GRVTALLGRNGAGKST--LLKALA 48 (272)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 666664
No 406
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=31.44 E-value=29 Score=34.31 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=14.4
Q ss_pred ceEEEccCCCCchhHHHH
Q 038017 525 STFILGRSGTGKTTILTM 542 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~ 542 (610)
-+.++|++|+||||.+-.
T Consensus 30 ~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 30 LFLICGPTGAGKSTILDA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466899999999996533
No 407
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.43 E-value=28 Score=35.27 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| +++++.
T Consensus 32 Ge~~~i~G~nGsGKST--Ll~~l~ 53 (253)
T PRK14261 32 NRVTALIGPSGCGKST--LLRCFN 53 (253)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 408
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=31.42 E-value=27 Score=38.08 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 40 Ge~~~LlGpsGsGKST--LLr~Ia 61 (375)
T PRK09452 40 GEFLTLLGPSGCGKTT--VLRLIA 61 (375)
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3447799999999998 556664
No 409
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.36 E-value=29 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.5
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+...++|++|+|||| +++++.
T Consensus 26 ~~~~i~G~nGsGKSt--ll~~l~ 46 (157)
T cd00267 26 EIVALVGPNGSGKST--LLRAIA 46 (157)
T ss_pred CEEEEECCCCCCHHH--HHHHHh
Confidence 457799999999997 666654
No 410
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=31.34 E-value=83 Score=38.01 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.3
Q ss_pred CceEEEccCCCCchhHHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
..+++.|.+|+||||....-+++.
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~ 41 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDA 41 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999888753
No 411
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=31.34 E-value=27 Score=38.06 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-+.++|+||+|||| ++|++.
T Consensus 45 Ge~~~llGpsGsGKST--LLr~Ia 66 (377)
T PRK11607 45 GEIFALLGASGCGKST--LLRMLA 66 (377)
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3446789999999998 556664
No 412
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.27 E-value=28 Score=35.45 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=18.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+.+.++|++|+|||| ++|++.-
T Consensus 33 Ge~~~l~G~nGsGKST--Llk~l~G 55 (259)
T PRK14260 33 NKVTAIIGPSGCGKST--FIKTLNR 55 (259)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHh
Confidence 4557899999999997 6677653
No 413
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=31.26 E-value=28 Score=35.48 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| ++|++.
T Consensus 39 Ge~~~i~G~nGsGKST--Ll~~l~ 60 (260)
T PRK10744 39 NQVTAFIGPSGCGKST--LLRTFN 60 (260)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999997 566654
No 414
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=31.23 E-value=29 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~ 47 (201)
T cd03231 26 GEALQVTGPNGSGKTT--LLRILA 47 (201)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4447799999999997 556654
No 415
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=31.16 E-value=28 Score=35.63 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| ++|++.
T Consensus 38 Ge~~~I~G~NGsGKST--Llk~l~ 59 (257)
T PRK11247 38 GQFVAVVGRSGCGKST--LLRLLA 59 (257)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 416
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=31.12 E-value=28 Score=35.39 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| +++++.
T Consensus 30 Ge~~~i~G~nGsGKST--Ll~~la 51 (258)
T PRK14241 30 RSVTAFIGPSGCGKST--VLRTLN 51 (258)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 566654
No 417
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=31.10 E-value=28 Score=35.08 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 31 Ge~~~i~G~nGsGKST--Ll~~l~ 52 (252)
T PRK14239 31 NEITALIGPSGSGKST--LLRSIN 52 (252)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 418
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=31.08 E-value=29 Score=31.31 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.4
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 367899999999943
No 419
>PRK05642 DNA replication initiation factor; Validated
Probab=31.00 E-value=26 Score=35.41 Aligned_cols=15 Identities=20% Similarity=0.760 Sum_probs=12.8
Q ss_pred ceEEEccCCCCchhH
Q 038017 525 STFILGRSGTGKTTI 539 (610)
Q Consensus 525 s~~vlGrSgtgktt~ 539 (610)
.+++.|++|+|||.-
T Consensus 47 ~l~l~G~~G~GKTHL 61 (234)
T PRK05642 47 LIYLWGKDGVGRSHL 61 (234)
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999964
No 420
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=30.97 E-value=28 Score=33.59 Aligned_cols=15 Identities=53% Similarity=0.627 Sum_probs=12.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.||+||||.+
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 357899999999965
No 421
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=30.95 E-value=45 Score=32.10 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCChh
Q 038017 257 FCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E~ 297 (610)
.+..+++|++||+.....+ .......++++|||||-.+.+.
T Consensus 115 ~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 115 KLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc
Confidence 3335889999997653321 1122346799999999887644
No 422
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=30.93 E-value=29 Score=34.72 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| +++++.
T Consensus 29 Ge~~~l~G~nGsGKST--Ll~~i~ 50 (238)
T cd03249 29 GKTVALVGSSGCGKST--VVSLLE 50 (238)
T ss_pred CCEEEEEeCCCCCHHH--HHHHHh
Confidence 4457899999999998 556654
No 423
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=30.88 E-value=29 Score=31.75 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=14.7
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
++++|++|.|||+. +.++..
T Consensus 3 i~~vG~~~vGKTsl-i~~l~~ 22 (168)
T cd04119 3 VISMGNSGVGKSCI-IKRYCE 22 (168)
T ss_pred EEEECCCCCCHHHH-HHHHHh
Confidence 57899999999963 445543
No 424
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.85 E-value=29 Score=33.61 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-..++|++|+|||| +++++.-
T Consensus 26 Ge~~~l~G~nGsGKST--Ll~~l~G 48 (195)
T PRK13541 26 SAITYIKGANGCGKSS--LLRMIAG 48 (195)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999998 6666643
No 425
>PRK06921 hypothetical protein; Provisional
Probab=30.84 E-value=29 Score=35.94 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||..+
T Consensus 118 ~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 118 NSIALLGQPGSGKTHLL 134 (266)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45789999999999643
No 426
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=30.83 E-value=29 Score=35.41 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|++|+|||| +++++.-
T Consensus 30 Ge~~~i~G~nGsGKST--Ll~~i~G 52 (262)
T PRK09984 30 GEMVALLGPSGSGKST--LLRHLSG 52 (262)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999998 6667653
No 427
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.81 E-value=29 Score=35.70 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| +++++.-
T Consensus 35 Ge~~~l~G~nGsGKST--Ll~~l~G 57 (271)
T PRK13632 35 GEYVAILGHNGSGKST--ISKILTG 57 (271)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457799999999998 5666653
No 428
>PRK08356 hypothetical protein; Provisional
Probab=30.79 E-value=28 Score=33.84 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|.+|+||+|.+
T Consensus 8 i~~~G~~gsGK~t~a 22 (195)
T PRK08356 8 VGVVGKIAAGKTTVA 22 (195)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999976
No 429
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.77 E-value=29 Score=35.61 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-+.++|++|+|||| +++++.-
T Consensus 39 Ge~~~i~G~NGsGKST--Ll~~l~G 61 (267)
T PRK15112 39 GQTLAIIGENGSGKST--LAKMLAG 61 (267)
T ss_pred CCEEEEEcCCCCCHHH--HHHHHhC
Confidence 3447799999999997 6676653
No 430
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=30.72 E-value=29 Score=37.50 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-+.++|+||+|||| ++|++.-
T Consensus 28 Ge~~~llGpsGsGKST--LLr~IaG 50 (353)
T PRK10851 28 GQMVALLGPSGSGKTT--LLRIIAG 50 (353)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999998 6677653
No 431
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=30.69 E-value=29 Score=35.62 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~ 54 (269)
T PRK11831 33 GKITAIMGPSGIGKTT--LLRLIG 54 (269)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 666664
No 432
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=30.65 E-value=30 Score=34.23 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+.+.++|++|+|||| +++++.
T Consensus 31 G~~~~I~G~nGsGKSt--Ll~~l~ 52 (220)
T TIGR02982 31 GEIVILTGPSGSGKTT--LLTLIG 52 (220)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4568899999999997 556654
No 433
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=30.62 E-value=29 Score=35.49 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| +++++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~i~ 54 (265)
T PRK10253 33 GHFTAIIGPNGCGKST--LLRTLS 54 (265)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 3347799999999998 566654
No 434
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=30.61 E-value=28 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=35.9
Q ss_pred HHHHHHhcCCeEEEEcccccch-h--cccccCCCcEEEEecCCCCChhHHH
Q 038017 253 LLKDFCFTKASLIFCTASSSYK-L--HSVAMEQLKFLVIDEAAQLKESESA 300 (610)
Q Consensus 253 ~i~~~il~~a~VI~~T~sss~~-l--~~~~~~~fD~vIIDEAsQ~~E~e~l 300 (610)
+=+......++|+++|+...-. + ..++...++++|+|||-.++--.+-
T Consensus 99 ~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY 149 (542)
T COG1111 99 EEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY 149 (542)
T ss_pred HHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH
Confidence 3467889999999999876432 1 2345667999999999999865433
No 435
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=30.60 E-value=25 Score=35.95 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=15.5
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.++++.|..|+||||.+-
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 3467889999999999763
No 436
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=30.53 E-value=26 Score=37.35 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|.||+|||| +++++.
T Consensus 42 Ge~~~ivG~sGsGKST--L~~~l~ 63 (330)
T PRK09473 42 GETLGIVGESGSGKSQ--TAFALM 63 (330)
T ss_pred CCEEEEECCCCchHHH--HHHHHH
Confidence 4457899999999998 445543
No 437
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.51 E-value=30 Score=34.93 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~i~ 50 (250)
T PRK14262 29 NQITAIIGPSGCGKTT--LLRSIN 50 (250)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 666654
No 438
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.48 E-value=29 Score=35.60 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (271)
T PRK13638 27 SPVTGLVGANGCGKST--LFMNLS 48 (271)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 3447799999999998 666654
No 439
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=30.46 E-value=30 Score=35.09 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 22 Gei~~l~G~nGsGKST--Ll~~l~ 43 (248)
T PRK03695 22 GEILHLVGPNGAGKST--LLARMA 43 (248)
T ss_pred CCEEEEECCCCCCHHH--HHHHHc
Confidence 4457799999999998 555554
No 440
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.45 E-value=31 Score=35.86 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+....++|.||+||||..
T Consensus 39 ge~~glVGESG~GKSTlg 56 (268)
T COG4608 39 GETLGLVGESGCGKSTLG 56 (268)
T ss_pred CCEEEEEecCCCCHHHHH
Confidence 556789999999999964
No 441
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=30.41 E-value=38 Score=31.24 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=15.4
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|.+|+|||+ ++.++..
T Consensus 4 i~~~G~~~~GKTs-li~~~~~ 23 (164)
T cd04175 4 LVVLGSGGVGKSA-LTVQFVQ 23 (164)
T ss_pred EEEECCCCCCHHH-HHHHHHh
Confidence 5788999999998 4555553
No 442
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=30.41 E-value=31 Score=38.95 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
|...-|+|+||+||+| +.|++
T Consensus 362 G~~lgIIGPSgSGKST--LaR~l 382 (580)
T COG4618 362 GEALGIIGPSGSGKST--LARLL 382 (580)
T ss_pred CceEEEECCCCccHHH--HHHHH
Confidence 5568899999999998 44443
No 443
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=30.35 E-value=30 Score=34.71 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|....++|++|+|||| ++|++.
T Consensus 28 Ge~~~l~G~nGsGKST--Ll~~l~ 49 (242)
T TIGR03411 28 GELRVIIGPNGAGKTT--MMDVIT 49 (242)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3446799999999998 566654
No 444
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=30.27 E-value=30 Score=35.27 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| ++|++.
T Consensus 30 Ge~~~I~G~NGsGKST--Ll~~i~ 51 (251)
T PRK09544 30 GKILTLLGPNGAGKST--LVRVVL 51 (251)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 666664
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=30.27 E-value=29 Score=39.33 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=18.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+.+.++|+||+|||| +.+++..
T Consensus 361 G~~vaIvG~SGsGKST--Ll~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKST--LLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 5568899999999998 5666654
No 446
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.25 E-value=25 Score=35.17 Aligned_cols=14 Identities=50% Similarity=0.812 Sum_probs=12.5
Q ss_pred ceEEEccCCCCchh
Q 038017 525 STFILGRSGTGKTT 538 (610)
Q Consensus 525 s~~vlGrSgtgktt 538 (610)
++++.|.+|+|||-
T Consensus 36 ~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH 49 (219)
T ss_dssp EEEEEESTTSSHHH
T ss_pred ceEEECCCCCCHHH
Confidence 47899999999996
No 447
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.24 E-value=1.2e+02 Score=34.49 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=51.5
Q ss_pred cccceeeChhhceEEEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 506 LDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 506 ~dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
.+-|+.++-+---++.-|++++.+.++|+|||...++-.+.. +..+..... ++.
T Consensus 111 ~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~-----l~~~~~~~~-~~~-------------------- 164 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVH-----LNNEQGKLS-RGD-------------------- 164 (519)
T ss_pred CCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHH-----HHhcccccc-CCC--------------------
Confidence 345666666666677778999999999999999888777642 222111100 111
Q ss_pred ceeEEEEecCHHHHHHHHHHhhh
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
..+-|=++.=.-|++||++.+.+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHH
Confidence 14556777788899999988754
No 448
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.20 E-value=30 Score=33.90 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+....++|++|+|||| +++++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~ 54 (202)
T cd03233 33 GEMVLVLGRPGSGCST--LLKALA 54 (202)
T ss_pred CcEEEEECCCCCCHHH--HHHHhc
Confidence 3347799999999998 666654
No 449
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=30.19 E-value=30 Score=31.79 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.1
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+||||.
T Consensus 3 i~v~G~~~~GKTsl 16 (164)
T smart00173 3 LVVLGSGGVGKSAL 16 (164)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999974
No 450
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.19 E-value=28 Score=39.20 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=15.0
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.+.++.|+.||||||.+.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4456889999999998553
No 451
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=30.18 E-value=31 Score=32.62 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++-..++|++|+|||| +++++.
T Consensus 27 Ge~~~i~G~nGsGKST--Ll~~l~ 48 (166)
T cd03223 27 GDRLLITGPSGTGKSS--LFRALA 48 (166)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 555554
No 452
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=30.18 E-value=31 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.752 Sum_probs=15.4
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|..|+||||.+
T Consensus 132 ~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457889999999999965
No 453
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=30.17 E-value=29 Score=34.73 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=14.9
Q ss_pred eEEEccCCCCchh--HHHHHHHH
Q 038017 526 TFILGRSGTGKTT--ILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt--~~~~kl~~ 546 (610)
+.+.|++|+|||| ..+..++.
T Consensus 36 igi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999 33444443
No 454
>PRK04195 replication factor C large subunit; Provisional
Probab=30.11 E-value=29 Score=39.03 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+++.|++|+||||.+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345788999999999855
No 455
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=30.10 E-value=30 Score=35.07 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-..++|++|+|||| +++++.-
T Consensus 28 Ge~~~l~G~nGsGKST--Ll~~l~G 50 (255)
T PRK11231 28 GKITALIGPNGCGKST--LLKCFAR 50 (255)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3447799999999998 6666643
No 456
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.09 E-value=31 Score=32.77 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..+.++|++|+|||| ++|++.-
T Consensus 26 Ge~~~i~G~nGsGKSt--Ll~~l~G 48 (173)
T cd03230 26 GEIYGLLGPNGAGKTT--LIKIILG 48 (173)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3447799999999998 6666653
No 457
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=30.06 E-value=13 Score=37.08 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=15.8
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
|.-+-++|+.|.|||||+.|
T Consensus 30 GEiVGLLGPNGAGKTT~Fym 49 (243)
T COG1137 30 GEIVGLLGPNGAGKTTTFYM 49 (243)
T ss_pred CcEEEEECCCCCCceeEEEE
Confidence 33466899999999998754
No 458
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=30.06 E-value=30 Score=31.32 Aligned_cols=19 Identities=32% Similarity=0.763 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||+ ++.++.
T Consensus 2 i~i~G~~~~GKTs-li~~l~ 20 (160)
T cd00876 2 VVVLGAGGVGKSA-ITIQFV 20 (160)
T ss_pred EEEECCCCCCHHH-HHHHHH
Confidence 5789999999997 344444
No 459
>PRK00254 ski2-like helicase; Provisional
Probab=30.03 E-value=85 Score=37.26 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.+++|+|||.+..+-++..... + | -+-|||....-||.++
T Consensus 39 g~nvlv~apTGsGKT~~~~l~il~~l~~------------~----------------~------~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 39 GKNLVLAIPTASGKTLVAEIVMVNKLLR------------E----------------G------GKAVYLVPLKALAEEK 84 (720)
T ss_pred CCcEEEECCCCcHHHHHHHHHHHHHHHh------------c----------------C------CeEEEEeChHHHHHHH
Confidence 6688999999999999998777653210 0 0 2458999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 85 ~~~~~~ 90 (720)
T PRK00254 85 YREFKD 90 (720)
T ss_pred HHHHHH
Confidence 876653
No 460
>PRK13948 shikimate kinase; Provisional
Probab=29.99 E-value=32 Score=33.55 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.+.+++|-.|+||||..
T Consensus 10 ~~~I~LiG~~GsGKSTvg 27 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIG 27 (182)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999865
No 461
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=29.98 E-value=42 Score=33.10 Aligned_cols=17 Identities=53% Similarity=0.899 Sum_probs=14.3
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
-+.++|++|+||||.+-
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999999654
No 462
>PRK13949 shikimate kinase; Provisional
Probab=29.97 E-value=31 Score=32.94 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=13.9
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
..+++|..|+||||..-
T Consensus 3 ~I~liG~~GsGKstl~~ 19 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGK 19 (169)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998543
No 463
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=29.97 E-value=31 Score=34.00 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-..++|++|+|||| +++++.-
T Consensus 30 Ge~~~i~G~nGsGKST--Ll~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSS--LLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHc
Confidence 3446789999999998 6667654
No 464
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=29.97 E-value=30 Score=35.56 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 50 Ge~~~I~G~nGsGKST--Ll~~i~ 71 (271)
T PRK14238 50 NEVTAIIGPSGCGKST--YIKTLN 71 (271)
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4457799999999998 666664
No 465
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=29.96 E-value=29 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 29 Ge~~~l~G~nGsGKST--LL~~ia 50 (369)
T PRK11000 29 GEFVVFVGPSGCGKST--LLRMIA 50 (369)
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3447799999999998 566664
No 466
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.90 E-value=30 Score=35.82 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 33 Ge~~~i~G~nGaGKST--Ll~~i~ 54 (279)
T PRK13635 33 GEWVAIVGHNGSGKST--LAKLLN 54 (279)
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4446789999999998 556654
No 467
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=29.88 E-value=30 Score=36.90 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=16.3
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
|..+.|+|.||+|||| +++++
T Consensus 41 Ge~~~IvG~sGsGKST--Ll~~l 61 (327)
T PRK11308 41 GKTLAVVGESGCGKST--LARLL 61 (327)
T ss_pred CCEEEEECCCCCcHHH--HHHHH
Confidence 5567899999999998 44444
No 468
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=29.86 E-value=31 Score=34.47 Aligned_cols=22 Identities=50% Similarity=0.649 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|+-..++|++|+|||| ++|++.
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~ 49 (237)
T cd03252 28 GEVVGIVGRSGSGKST--LTKLIQ 49 (237)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999997 666664
No 469
>PRK14527 adenylate kinase; Provisional
Probab=29.85 E-value=32 Score=33.24 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|.+|+||||.+
T Consensus 9 i~i~G~pGsGKsT~a 23 (191)
T PRK14527 9 VIFLGPPGAGKGTQA 23 (191)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 470
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=29.84 E-value=31 Score=33.48 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+....++|++|+|||| +++++.-
T Consensus 26 Ge~~~i~G~nGsGKST--Ll~~l~G 48 (198)
T TIGR01189 26 GEALQVTGPNGIGKTT--LLRILAG 48 (198)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 3447799999999997 5556543
No 471
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.81 E-value=35 Score=35.34 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.++|++|+|||| ++|++.-
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~G 55 (279)
T PRK13650 33 GEWLSIIGHNGSGKST--TVRLIDG 55 (279)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 4457899999999998 5666543
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=29.77 E-value=32 Score=32.68 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++...++|++|+|||| +++++.-
T Consensus 28 Ge~~~i~G~nGsGKSt--Ll~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKST--LARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHh
Confidence 4457799999999998 6666653
No 473
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=29.75 E-value=31 Score=34.41 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=11.6
Q ss_pred CCceEEEccCCCCchh
Q 038017 523 PRSTFILGRSGTGKTT 538 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt 538 (610)
+..++++|+.|||||+
T Consensus 22 ~h~lLl~GppGtGKTm 37 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTM 37 (206)
T ss_dssp C--EEEES-CCCTHHH
T ss_pred CCCeEEECCCCCCHHH
Confidence 4578999999999996
No 474
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=29.70 E-value=34 Score=31.23 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=13.8
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
..++++.|..||||++.
T Consensus 21 ~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLL 37 (138)
T ss_dssp SS-EEEECCTTSSHHHH
T ss_pred CCcEEEEcCCCCCHHHH
Confidence 45689999999999974
No 475
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=29.69 E-value=30 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
|+.+.++|.||+|||| ++|++
T Consensus 47 Ge~~~lvG~sGsGKST--Llk~i 67 (331)
T PRK15079 47 GETLGVVGESGCGKST--FARAI 67 (331)
T ss_pred CCEEEEECCCCCCHHH--HHHHH
Confidence 4457799999999998 44444
No 476
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.69 E-value=31 Score=35.59 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| |++++.
T Consensus 46 Ge~~~IiG~nGsGKST--Ll~~l~ 67 (274)
T PRK14265 46 KKIIAFIGPSGCGKST--LLRCFN 67 (274)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 477
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=29.68 E-value=31 Score=36.85 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=17.3
Q ss_pred CceEEEccCCCCchhHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+.+.++|++|+||||-++.=+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~ 77 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIA 77 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999998775443
No 478
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=29.67 E-value=31 Score=32.13 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=11.5
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+++.|.+|+||||
T Consensus 2 i~i~G~~GsGKST 14 (149)
T cd02027 2 IWLTGLSGSGKST 14 (149)
T ss_pred EEEEcCCCCCHHH
Confidence 4688999999988
No 479
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.66 E-value=31 Score=35.59 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| |++++.
T Consensus 33 Ge~~~l~G~nGsGKST--Ll~~i~ 54 (280)
T PRK13649 33 GSYTAFIGHTGSGKST--IMQLLN 54 (280)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4456799999999998 666654
No 480
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.63 E-value=33 Score=35.75 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=18.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|..+.++|++|+|||| ++|++.-
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~l~G 55 (290)
T PRK13634 33 GSYVAIIGHTGSGKST--LLQHLNG 55 (290)
T ss_pred CCEEEEECCCCCcHHH--HHHHHhc
Confidence 4457899999999998 6666653
No 481
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=29.62 E-value=33 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.4
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.+.++|++|+||||. +.++..
T Consensus 3 ~i~l~G~~~~GKstl-i~~l~~ 23 (157)
T cd04164 3 KVVIVGKPNVGKSSL-LNALAG 23 (157)
T ss_pred EEEEECCCCCCHHHH-HHHHHC
Confidence 357899999999964 444544
No 482
>PRK13531 regulatory ATPase RavA; Provisional
Probab=29.54 E-value=29 Score=39.15 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.7
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|.+|||||+.+
T Consensus 39 g~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CCCEEEECCCChhHHHHH
Confidence 668999999999999854
No 483
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.53 E-value=83 Score=35.27 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=46.6
Q ss_pred eChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
+||-|..-|-+ ...+.+=...|+|||..++.-|+.. ++ ..+... + ..+++
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~--i~--------rr~~~~------------~-----~~~vg 81 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEI--IY--------RREAKT------------P-----PGQVG 81 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHH--HH--------hhccCC------------C-----cccee
Confidence 77777765554 4567888899999999999999864 22 100000 0 11578
Q ss_pred EEEEecCHHHHHHHHH
Q 038017 589 QLFVTVSPKLCFAVKQ 604 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~ 604 (610)
-|-||...-||.||..
T Consensus 82 alIIsPTRELa~QI~~ 97 (567)
T KOG0345|consen 82 ALIISPTRELARQIRE 97 (567)
T ss_pred EEEecCcHHHHHHHHH
Confidence 8999999999999865
No 484
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=29.48 E-value=46 Score=39.99 Aligned_cols=43 Identities=33% Similarity=0.608 Sum_probs=26.6
Q ss_pred ccccccCCCccccceeeChhhceEEEcCCceEEEccCCCCchhHHHHHHH
Q 038017 496 HLLSDRDGRELDLPFEVTDEQLEMILFPRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 496 ~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
.++....+....+||-+..+ . ..++|+|.||+||||-+-+.+-
T Consensus 416 ~~~kt~~~sPf~~nfH~~~d------~-ghT~I~G~tGaGKTvLl~~lla 458 (796)
T COG3451 416 TVLKTEDGSPFYFNFHVGED------V-GHTLIIGPTGAGKTVLLSFLLA 458 (796)
T ss_pred eeeecCCCCceEEecccCCC------C-CCeEEECCCCCCHHHHHHHHHH
Confidence 44455555555555533321 1 2689999999999986555443
No 485
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.45 E-value=32 Score=34.73 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=17.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.-..++|++|+|||| +++++.-
T Consensus 28 Ge~~~i~G~nGsGKST--Ll~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKST--FLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhc
Confidence 3447799999999998 6666653
No 486
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=29.42 E-value=31 Score=33.87 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.++|++|+||||.+
T Consensus 12 v~liG~~g~GKTtLi 26 (215)
T PTZ00132 12 LILVGDGGVGKTTFV 26 (215)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 487
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=29.40 E-value=38 Score=31.85 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=15.1
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
++++|.+|+|||+. +.++..
T Consensus 7 v~~vG~~~vGKTsl-i~~~~~ 26 (169)
T cd01892 7 CFVLGAKGSGKSAL-LRAFLG 26 (169)
T ss_pred EEEECCCCCcHHHH-HHHHhC
Confidence 57899999999964 445544
No 488
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.38 E-value=31 Score=35.79 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~i~G~nGsGKST--Ll~~L~ 54 (286)
T PRK13646 33 GKYYAIVGQTGSGKST--LIQNIN 54 (286)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3457899999999998 566664
No 489
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=29.37 E-value=32 Score=33.88 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=11.9
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
.++.|+||+||+|.
T Consensus 7 ~vlsgPSG~GKsTl 20 (191)
T COG0194 7 IVLSGPSGVGKSTL 20 (191)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999984
No 490
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=29.35 E-value=32 Score=34.66 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| +++++.
T Consensus 29 Ge~~~i~G~nGsGKST--Ll~~l~ 50 (250)
T PRK11264 29 GEVVAIIGPSGSGKTT--LLRCIN 50 (250)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3446799999999998 556554
No 491
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=29.34 E-value=30 Score=40.25 Aligned_cols=18 Identities=39% Similarity=0.697 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.+++++|++||||||.+
T Consensus 175 ~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456889999999999965
No 492
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=29.31 E-value=32 Score=33.89 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.4
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
++++|.+|+||+|.+-
T Consensus 2 I~i~G~pGsGKsT~a~ 17 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAK 17 (210)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998543
No 493
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.30 E-value=32 Score=34.77 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-..++|++|+|||| +++++.
T Consensus 30 G~~~~i~G~nGsGKST--Ll~~l~ 51 (251)
T PRK14249 30 RQITAIIGPSGCGKST--LLRALN 51 (251)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 666664
No 494
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=29.24 E-value=35 Score=39.06 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=17.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+...++|+||+||+| ++|++..
T Consensus 366 Ge~i~IvG~sGsGKST--LlklL~g 388 (576)
T TIGR02204 366 GETVALVGPSGAGKST--LFQLLLR 388 (576)
T ss_pred CCEEEEECCCCCCHHH--HHHHHHh
Confidence 4558899999999998 5555543
No 495
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=29.23 E-value=32 Score=36.11 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=17.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 30 Ge~~~l~G~NGaGKST--Ll~~l~ 51 (303)
T TIGR01288 30 GECFGLLGPNGAGKST--IARMLL 51 (303)
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4447799999999998 666664
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=29.23 E-value=30 Score=33.73 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=14.8
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-+.++|.+|+|||| +.+++.
T Consensus 26 ~i~i~G~~GsGKST--la~~l~ 45 (198)
T PRK03846 26 VLWFTGLSGSGKST--VAGALE 45 (198)
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 46789999999998 344443
No 497
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=29.19 E-value=37 Score=33.33 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+...++|++|+|||| ++|++.-
T Consensus 24 Ge~~~i~G~nGsGKST--Ll~~l~G 46 (213)
T TIGR01277 24 GEIVAIMGPSGAGKST--LLNLIAG 46 (213)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhc
Confidence 4557899999999997 5566543
No 498
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=29.15 E-value=33 Score=33.49 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|+-+.++|++|+|||| +++++.-
T Consensus 26 Ge~~~i~G~nGsGKSt--Ll~~l~G 48 (200)
T cd03217 26 GEVHALMGPNGSGKST--LAKTIMG 48 (200)
T ss_pred CcEEEEECCCCCCHHH--HHHHHhC
Confidence 4457799999999997 6666543
No 499
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=29.14 E-value=58 Score=39.96 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=41.4
Q ss_pred cCCeEEEEcccccch----hcccccCCCcEEEEecCCCCCh--------hHHHhhccCcCcceEEEeCCCCcCCcc
Q 038017 260 TKASLIFCTASSSYK----LHSVAMEQLKFLVIDEAAQLKE--------SESAIPLQLPCIQHAILVGDECQLPAM 323 (610)
Q Consensus 260 ~~a~VI~~T~sss~~----l~~~~~~~fD~vIIDEAsQ~~E--------~e~lipL~~~~~k~~ILvGD~~QLpP~ 323 (610)
...++++|+.....+ ...+....||+||||||-.+.- ...+-.|.......+.|-|=|.|+.+.
T Consensus 246 ~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~ 321 (956)
T PRK04914 246 ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQE 321 (956)
T ss_pred ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcH
Confidence 356788888654332 1223445899999999988861 233434432223578899999997764
No 500
>PRK09087 hypothetical protein; Validated
Probab=29.13 E-value=31 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=15.0
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+++.|++|+|||+ +++.|.
T Consensus 47 l~l~G~~GsGKTh--Ll~~~~ 65 (226)
T PRK09087 47 VVLAGPVGSGKTH--LASIWR 65 (226)
T ss_pred EEEECCCCCCHHH--HHHHHH
Confidence 7899999999997 444554
Done!