Query 038017
Match_columns 610
No_of_seqs 418 out of 1690
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 1E-41 3.4E-46 389.7 9.2 261 253-527 334-614 (646)
2 2gk6_A Regulator of nonsense t 100.0 2E-35 6.9E-40 336.3 8.7 259 253-525 311-586 (624)
3 2wjy_A Regulator of nonsense t 100.0 7.3E-35 2.5E-39 338.9 10.2 259 253-525 487-762 (800)
4 2xzl_A ATP-dependent helicase 100.0 2E-34 6.8E-39 335.5 7.6 256 254-524 491-763 (802)
5 3vkw_A Replicase large subunit 98.4 1.4E-07 4.9E-12 102.1 4.7 87 282-376 234-321 (446)
6 1w36_D RECD, exodeoxyribonucle 98.3 3.2E-07 1.1E-11 103.9 3.7 88 281-369 261-374 (608)
7 3e1s_A Exodeoxyribonuclease V, 98.0 2.4E-06 8.2E-11 96.0 4.5 81 282-375 279-363 (574)
8 3lfu_A DNA helicase II; SF1 he 98.0 8.9E-06 3E-10 92.0 7.6 124 282-432 213-340 (647)
9 3upu_A ATP-dependent DNA helic 97.6 3.6E-05 1.2E-09 83.9 4.9 85 281-372 127-213 (459)
10 1uaa_A REP helicase, protein ( 96.9 0.0015 5.1E-08 74.5 8.1 85 281-373 206-294 (673)
11 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0032 1.1E-07 72.4 6.4 125 281-432 215-343 (724)
12 3u4q_A ATP-dependent helicase/ 92.9 0.05 1.7E-06 66.3 3.8 85 282-373 400-495 (1232)
13 3lfu_A DNA helicase II; SF1 he 92.3 0.079 2.7E-06 59.5 4.1 66 512-608 10-76 (647)
14 1w36_B RECB, exodeoxyribonucle 91.6 0.099 3.4E-06 63.4 4.1 84 282-372 377-463 (1180)
15 3iuy_A Probable ATP-dependent 88.2 0.53 1.8E-05 45.1 5.5 72 512-609 43-117 (228)
16 1uaa_A REP helicase, protein ( 87.7 0.29 1E-05 55.4 3.7 34 512-545 3-37 (673)
17 1pjr_A PCRA; DNA repair, DNA r 86.7 0.39 1.3E-05 55.0 4.1 66 512-608 12-78 (724)
18 3fmo_B ATP-dependent RNA helic 85.1 0.75 2.6E-05 46.6 4.8 54 524-609 132-185 (300)
19 3ly5_A ATP-dependent RNA helic 84.4 1.1 3.6E-05 44.4 5.4 69 512-608 77-148 (262)
20 1vec_A ATP-dependent RNA helic 84.2 1.1 3.7E-05 41.9 5.2 54 523-608 40-93 (206)
21 2pl3_A Probable ATP-dependent 84.0 1.4 4.7E-05 42.3 6.0 69 512-608 48-119 (236)
22 3fe2_A Probable ATP-dependent 83.6 1.1 3.8E-05 43.4 5.2 70 512-608 52-124 (242)
23 3u4q_A ATP-dependent helicase/ 82.1 0.96 3.3E-05 55.0 4.8 71 509-608 8-79 (1232)
24 1qde_A EIF4A, translation init 81.9 1.3 4.4E-05 42.1 4.8 54 523-608 51-104 (224)
25 3dkp_A Probable ATP-dependent 81.7 1.9 6.5E-05 41.6 6.0 67 512-609 52-121 (245)
26 2gxq_A Heat resistant RNA depe 81.6 1.6 5.4E-05 40.7 5.2 58 523-609 38-95 (207)
27 3ber_A Probable ATP-dependent 80.6 1.9 6.6E-05 42.1 5.7 65 512-608 66-133 (249)
28 3llm_A ATP-dependent RNA helic 80.3 3.2 0.00011 40.0 7.1 55 523-607 76-130 (235)
29 1wrb_A DJVLGB; RNA helicase, D 79.2 2.5 8.7E-05 40.9 6.0 74 512-608 46-122 (253)
30 2oxc_A Probable ATP-dependent 78.2 2 6.9E-05 41.1 4.8 66 512-609 47-115 (230)
31 1t6n_A Probable ATP-dependent 77.5 2.2 7.6E-05 40.3 4.9 66 512-609 37-105 (220)
32 3oiy_A Reverse gyrase helicase 77.4 1 3.5E-05 47.2 2.6 66 509-609 19-87 (414)
33 1q0u_A Bstdead; DEAD protein, 75.1 1.8 6.1E-05 41.1 3.4 65 512-608 27-94 (219)
34 3bor_A Human initiation factor 74.3 1.6 5.6E-05 42.1 3.0 55 523-609 67-121 (237)
35 2db3_A ATP-dependent RNA helic 72.4 3.5 0.00012 43.7 5.3 70 512-608 79-151 (434)
36 3fht_A ATP-dependent RNA helic 72.2 3.3 0.00011 42.7 4.9 54 524-609 65-118 (412)
37 1s2m_A Putative ATP-dependent 72.1 4.3 0.00015 41.8 5.7 65 512-608 44-111 (400)
38 4a4z_A Antiviral helicase SKI2 71.6 3.1 0.00011 49.5 5.0 67 507-608 35-104 (997)
39 3i5x_A ATP-dependent RNA helic 71.4 3.7 0.00012 44.9 5.3 69 512-608 95-168 (563)
40 3pey_A ATP-dependent RNA helic 71.1 4.7 0.00016 41.1 5.7 53 524-608 45-97 (395)
41 2gxq_A Heat resistant RNA depe 70.9 2.2 7.5E-05 39.7 2.9 42 254-295 113-157 (207)
42 2i4i_A ATP-dependent RNA helic 70.7 6.8 0.00023 40.4 7.0 83 512-608 38-123 (417)
43 3b6e_A Interferon-induced heli 70.6 2.9 0.0001 38.9 3.7 70 510-608 32-105 (216)
44 3ec2_A DNA replication protein 70.1 1.4 4.8E-05 40.5 1.3 18 523-540 38-55 (180)
45 2z0m_A 337AA long hypothetical 69.8 4 0.00014 40.7 4.8 48 523-608 31-78 (337)
46 3sqw_A ATP-dependent RNA helic 69.8 4.1 0.00014 44.9 5.3 69 512-608 44-117 (579)
47 1hv8_A Putative ATP-dependent 68.6 6.3 0.00022 39.6 6.0 64 512-608 29-96 (367)
48 3dmn_A Putative DNA helicase; 68.6 5.3 0.00018 36.9 4.9 21 353-373 2-22 (174)
49 3eiq_A Eukaryotic initiation f 67.5 4.6 0.00016 41.7 4.8 54 523-608 77-130 (414)
50 3a00_A Guanylate kinase, GMP k 67.0 2.2 7.4E-05 39.6 1.9 21 524-546 2-22 (186)
51 1jbk_A CLPB protein; beta barr 66.9 2.2 7.4E-05 38.5 1.8 17 524-540 44-60 (195)
52 2z83_A Helicase/nucleoside tri 66.5 4.4 0.00015 43.5 4.5 55 519-607 17-71 (459)
53 1lvg_A Guanylate kinase, GMP k 66.3 2.2 7.6E-05 40.2 1.8 22 523-546 4-25 (198)
54 2xgj_A ATP-dependent RNA helic 66.1 4.2 0.00015 48.3 4.6 67 507-608 82-151 (1010)
55 2fz4_A DNA repair protein RAD2 65.7 5 0.00017 38.9 4.3 35 510-544 92-129 (237)
56 1kgd_A CASK, peripheral plasma 64.8 2.4 8.3E-05 39.1 1.8 17 524-540 6-22 (180)
57 3fmp_B ATP-dependent RNA helic 64.5 4.5 0.00015 43.2 4.1 53 524-608 132-184 (479)
58 1xti_A Probable ATP-dependent 64.3 7.7 0.00026 39.6 5.7 66 512-609 31-99 (391)
59 2xzl_A ATP-dependent helicase 64.3 8.2 0.00028 44.7 6.4 83 1-94 177-259 (802)
60 3co5_A Putative two-component 64.1 2.7 9.2E-05 37.3 1.9 18 523-540 27-44 (143)
61 1gm5_A RECG; helicase, replica 64.0 4.5 0.00015 46.7 4.2 66 508-608 365-439 (780)
62 1lv7_A FTSH; alpha/beta domain 64.0 2.5 8.7E-05 41.1 1.8 18 523-540 45-62 (257)
63 3n70_A Transport activator; si 63.8 2.8 9.7E-05 37.2 2.0 18 523-540 24-41 (145)
64 1zp6_A Hypothetical protein AT 63.7 2.3 7.9E-05 39.1 1.4 21 524-546 10-30 (191)
65 2w58_A DNAI, primosome compone 63.6 2.6 8.9E-05 39.3 1.8 17 524-540 55-71 (202)
66 2fz4_A DNA repair protein RAD2 63.6 4.7 0.00016 39.1 3.7 37 261-297 171-207 (237)
67 1ex7_A Guanylate kinase; subst 63.3 2.8 9.7E-05 39.6 2.0 17 524-540 2-18 (186)
68 2kjq_A DNAA-related protein; s 63.2 3.1 0.00011 37.5 2.1 23 523-547 36-58 (149)
69 3l9o_A ATP-dependent RNA helic 63.2 4.3 0.00015 48.8 3.9 66 508-608 181-249 (1108)
70 4ddu_A Reverse gyrase; topoiso 62.0 4.9 0.00017 48.3 4.1 67 508-609 75-144 (1104)
71 2j0s_A ATP-dependent RNA helic 61.8 6.5 0.00022 40.6 4.6 65 512-608 60-127 (410)
72 3tr0_A Guanylate kinase, GMP k 61.3 3.1 0.00011 38.7 1.8 20 525-546 9-28 (205)
73 1wrb_A DJVLGB; RNA helicase, D 61.3 11 0.00037 36.3 5.9 41 255-295 144-187 (253)
74 3tau_A Guanylate kinase, GMP k 61.2 3.1 0.00011 39.4 1.8 16 525-540 10-25 (208)
75 1qhx_A CPT, protein (chloramph 61.2 3.1 0.00011 37.7 1.8 16 525-540 5-20 (178)
76 2qz4_A Paraplegin; AAA+, SPG7, 61.1 3 0.0001 40.3 1.8 18 523-540 39-56 (262)
77 1z6g_A Guanylate kinase; struc 60.7 3.3 0.00011 39.6 2.0 22 523-546 23-44 (218)
78 1ixz_A ATP-dependent metallopr 60.5 3.2 0.00011 40.3 1.8 17 524-540 50-66 (254)
79 3h4m_A Proteasome-activating n 60.4 3.1 0.00011 41.0 1.7 18 523-540 51-68 (285)
80 2p65_A Hypothetical protein PF 60.4 2.5 8.5E-05 38.1 0.9 17 524-540 44-60 (187)
81 3tbk_A RIG-I helicase domain; 60.3 7 0.00024 41.9 4.7 56 523-608 19-74 (555)
82 3b6e_A Interferon-induced heli 60.3 2.3 8E-05 39.6 0.7 39 258-296 129-176 (216)
83 3b9p_A CG5977-PA, isoform A; A 60.3 3.2 0.00011 41.2 1.8 18 523-540 54-71 (297)
84 1znw_A Guanylate kinase, GMP k 60.1 3.3 0.00011 39.1 1.8 21 523-545 20-40 (207)
85 3bos_A Putative DNA replicatio 60.0 3.3 0.00011 39.1 1.8 17 524-540 53-69 (242)
86 1kag_A SKI, shikimate kinase I 59.9 3.6 0.00012 37.1 2.0 17 524-540 5-21 (173)
87 2l8b_A Protein TRAI, DNA helic 59.8 2.6 8.8E-05 40.0 0.9 55 282-349 121-177 (189)
88 1fuu_A Yeast initiation factor 59.4 4.7 0.00016 41.2 3.0 65 512-608 44-111 (394)
89 3u4q_B ATP-dependent helicase/ 59.3 38 0.0013 40.7 11.3 84 284-370 203-297 (1166)
90 3ber_A Probable ATP-dependent 59.2 13 0.00044 36.1 6.0 42 255-296 155-200 (249)
91 1s96_A Guanylate kinase, GMP k 59.1 3.5 0.00012 39.8 1.8 22 523-546 16-37 (219)
92 1yks_A Genome polyprotein [con 59.0 10 0.00036 40.3 5.7 52 523-608 8-59 (440)
93 1rif_A DAR protein, DNA helica 58.6 5.8 0.0002 39.2 3.4 41 258-298 201-241 (282)
94 3cf0_A Transitional endoplasmi 58.5 3.5 0.00012 41.5 1.7 18 523-540 49-66 (301)
95 3kb2_A SPBC2 prophage-derived 58.2 3.5 0.00012 36.9 1.6 15 526-540 4-18 (173)
96 4a2p_A RIG-I, retinoic acid in 58.2 7.7 0.00026 41.7 4.6 69 510-608 6-77 (556)
97 3fho_A ATP-dependent RNA helic 58.0 12 0.00042 40.4 6.2 53 524-608 159-211 (508)
98 4gp7_A Metallophosphoesterase; 57.8 3.5 0.00012 37.8 1.5 18 524-541 10-27 (171)
99 1l8q_A Chromosomal replication 57.4 3.9 0.00013 41.3 1.9 17 524-540 38-54 (324)
100 1ofh_A ATP-dependent HSL prote 57.2 4.1 0.00014 40.4 2.0 18 523-540 50-67 (310)
101 3fe2_A Probable ATP-dependent 57.1 13 0.00043 35.7 5.5 43 253-295 144-189 (242)
102 3uie_A Adenylyl-sulfate kinase 57.1 3.5 0.00012 38.6 1.4 16 525-540 27-42 (200)
103 3vaa_A Shikimate kinase, SK; s 56.8 4.1 0.00014 38.1 1.8 16 525-540 27-42 (199)
104 3te6_A Regulatory protein SIR3 56.6 2.6 8.9E-05 43.3 0.4 19 523-541 45-63 (318)
105 2r62_A Cell division protease 56.6 2.7 9.2E-05 41.1 0.5 18 523-540 44-61 (268)
106 3iuy_A Probable ATP-dependent 56.2 4.9 0.00017 38.1 2.3 41 255-295 137-180 (228)
107 4eun_A Thermoresistant glucoki 56.1 4.3 0.00015 38.0 1.8 15 525-539 31-45 (200)
108 3trf_A Shikimate kinase, SK; a 55.9 4.3 0.00015 37.1 1.8 17 525-541 7-23 (185)
109 2onk_A Molybdate/tungstate ABC 55.9 4.4 0.00015 39.7 1.9 19 526-546 27-45 (240)
110 2p6r_A Afuhel308 helicase; pro 55.3 8.8 0.0003 43.3 4.6 51 523-608 40-90 (702)
111 2j41_A Guanylate kinase; GMP, 55.2 4.5 0.00015 37.5 1.8 21 525-547 8-28 (207)
112 3lw7_A Adenylate kinase relate 55.0 4.5 0.00015 36.0 1.7 16 526-541 4-19 (179)
113 2i4i_A ATP-dependent RNA helic 54.9 14 0.00049 37.9 5.8 42 254-295 144-188 (417)
114 3upu_A ATP-dependent DNA helic 54.8 7.6 0.00026 41.5 3.8 18 525-542 47-64 (459)
115 3c8u_A Fructokinase; YP_612366 54.7 4.6 0.00016 38.0 1.8 15 526-540 25-39 (208)
116 3syl_A Protein CBBX; photosynt 54.7 4.4 0.00015 40.4 1.7 17 524-540 68-84 (309)
117 1ye8_A Protein THEP1, hypothet 54.7 4.4 0.00015 37.6 1.6 19 526-546 3-21 (178)
118 2x8a_A Nuclear valosin-contain 54.7 4.6 0.00016 40.2 1.9 22 524-547 45-66 (274)
119 1iy2_A ATP-dependent metallopr 54.4 4.6 0.00016 39.9 1.8 17 524-540 74-90 (278)
120 2va8_A SSO2462, SKI2-type heli 54.3 16 0.00055 41.2 6.5 64 511-608 30-97 (715)
121 3lnc_A Guanylate kinase, GMP k 53.9 4.6 0.00016 38.6 1.7 17 524-540 28-44 (231)
122 1vec_A ATP-dependent RNA helic 53.7 6.8 0.00023 36.2 2.8 41 256-296 117-160 (206)
123 3ney_A 55 kDa erythrocyte memb 53.4 5 0.00017 38.3 1.8 17 523-539 19-35 (197)
124 3iij_A Coilin-interacting nucl 53.2 5.4 0.00018 36.3 2.0 17 524-540 12-28 (180)
125 2ehv_A Hypothetical protein PH 53.1 5.8 0.0002 37.8 2.3 19 523-541 30-48 (251)
126 1in4_A RUVB, holliday junction 53.0 5.1 0.00018 40.9 2.0 23 524-548 52-74 (334)
127 2zpa_A Uncharacterized protein 52.9 7.8 0.00027 43.9 3.5 78 281-371 254-335 (671)
128 2qor_A Guanylate kinase; phosp 52.9 5.5 0.00019 37.3 2.0 17 523-539 12-28 (204)
129 3llm_A ATP-dependent RNA helic 52.8 5.4 0.00018 38.4 2.0 35 260-294 154-188 (235)
130 2v1u_A Cell division control p 52.8 4.6 0.00016 41.1 1.6 18 523-540 44-61 (387)
131 3ly5_A ATP-dependent RNA helic 52.7 13 0.00046 36.2 4.9 44 252-295 167-214 (262)
132 2bdt_A BH3686; alpha-beta prot 52.6 4.2 0.00014 37.4 1.1 19 526-546 5-23 (189)
133 2zj8_A DNA helicase, putative 52.5 12 0.00041 42.4 5.1 53 523-609 39-91 (720)
134 2whx_A Serine protease/ntpase/ 52.5 14 0.00047 41.4 5.5 56 518-607 181-236 (618)
135 1d2n_A N-ethylmaleimide-sensit 52.4 4.2 0.00014 39.9 1.1 17 524-540 65-81 (272)
136 1knq_A Gluconate kinase; ALFA/ 52.2 4.9 0.00017 36.4 1.5 15 526-540 11-25 (175)
137 3b85_A Phosphate starvation-in 51.7 6.3 0.00021 37.7 2.2 22 523-546 22-43 (208)
138 4a74_A DNA repair and recombin 51.6 6.3 0.00022 37.0 2.2 19 523-541 25-43 (231)
139 3eie_A Vacuolar protein sortin 51.6 5.3 0.00018 40.5 1.8 18 523-540 51-68 (322)
140 3uk6_A RUVB-like 2; hexameric 51.5 5.2 0.00018 40.9 1.7 17 524-540 71-87 (368)
141 1njg_A DNA polymerase III subu 51.4 5.7 0.00019 37.0 1.9 16 525-540 47-62 (250)
142 2bjv_A PSP operon transcriptio 51.4 5.9 0.0002 38.6 2.0 18 523-540 29-46 (265)
143 3tif_A Uncharacterized ABC tra 51.3 5.5 0.00019 38.7 1.8 22 523-546 31-52 (235)
144 1qde_A EIF4A, translation init 51.2 5.5 0.00019 37.5 1.7 38 258-295 128-168 (224)
145 2pl3_A Probable ATP-dependent 51.0 15 0.00052 34.8 4.9 40 257-296 142-185 (236)
146 2wv9_A Flavivirin protease NS2 51.0 16 0.00055 41.3 5.8 53 522-608 240-292 (673)
147 3t15_A Ribulose bisphosphate c 51.0 5.6 0.00019 39.9 1.8 18 523-540 36-53 (293)
148 1n0w_A DNA repair protein RAD5 50.9 7.5 0.00026 36.9 2.6 22 523-544 24-45 (243)
149 3tqf_A HPR(Ser) kinase; transf 50.8 8.5 0.00029 36.2 2.9 26 519-544 12-37 (181)
150 1xwi_A SKD1 protein; VPS4B, AA 50.6 5.6 0.00019 40.5 1.8 18 523-540 45-62 (322)
151 2w0m_A SSO2452; RECA, SSPF, un 50.5 7.7 0.00026 36.3 2.6 20 523-542 23-42 (235)
152 2oxc_A Probable ATP-dependent 50.3 5.4 0.00019 38.0 1.5 39 256-294 137-178 (230)
153 2qby_A CDC6 homolog 1, cell di 50.1 6 0.0002 40.2 1.9 18 523-540 45-62 (386)
154 2cvh_A DNA repair and recombin 49.7 6.9 0.00024 36.5 2.1 22 523-544 20-41 (220)
155 2chg_A Replication factor C sm 49.7 6.5 0.00022 36.1 2.0 16 525-540 40-55 (226)
156 3hws_A ATP-dependent CLP prote 49.5 6.3 0.00021 40.6 2.0 18 523-540 51-68 (363)
157 1hqc_A RUVB; extended AAA-ATPa 49.4 7.1 0.00024 39.0 2.3 17 524-540 39-55 (324)
158 2pcj_A ABC transporter, lipopr 48.3 7.7 0.00026 37.3 2.3 22 523-546 30-51 (224)
159 2eyu_A Twitching motility prot 48.2 6 0.0002 39.2 1.5 17 524-540 26-42 (261)
160 1z63_A Helicase of the SNF2/RA 48.2 7.1 0.00024 41.8 2.2 60 259-320 126-190 (500)
161 2oca_A DAR protein, ATP-depend 48.0 13 0.00043 39.9 4.2 67 509-609 111-180 (510)
162 3bor_A Human initiation factor 48.0 16 0.00055 34.8 4.5 35 261-295 149-186 (237)
163 3t61_A Gluconokinase; PSI-biol 47.9 6.6 0.00023 36.5 1.7 16 525-540 20-35 (202)
164 2i3b_A HCR-ntpase, human cance 47.3 7.6 0.00026 36.5 2.0 16 524-539 2-17 (189)
165 3pfi_A Holliday junction ATP-d 47.2 7.2 0.00025 39.4 2.0 17 524-540 56-72 (338)
166 2fwr_A DNA repair protein RAD2 47.2 16 0.00055 38.6 4.8 37 509-545 91-130 (472)
167 1ly1_A Polynucleotide kinase; 47.1 6.9 0.00024 35.2 1.6 15 526-540 5-19 (181)
168 1nks_A Adenylate kinase; therm 46.9 7 0.00024 35.5 1.6 15 526-540 4-18 (194)
169 2qmh_A HPR kinase/phosphorylas 46.8 11 0.00036 36.3 2.9 24 519-542 30-53 (205)
170 2ff7_A Alpha-hemolysin translo 46.7 8.4 0.00029 37.7 2.3 22 523-546 35-56 (247)
171 2dr3_A UPF0273 protein PH0284; 46.6 8.8 0.0003 36.4 2.4 20 523-542 23-42 (247)
172 2cbz_A Multidrug resistance-as 46.5 7.3 0.00025 37.9 1.8 22 523-546 31-52 (237)
173 3rc3_A ATP-dependent RNA helic 46.5 17 0.00059 41.1 5.1 47 523-608 155-201 (677)
174 3asz_A Uridine kinase; cytidin 46.5 6.4 0.00022 36.8 1.4 19 526-546 9-27 (211)
175 2eyq_A TRCF, transcription-rep 46.3 14 0.00049 44.5 4.6 65 508-607 600-673 (1151)
176 2bbw_A Adenylate kinase 4, AK4 46.3 7.3 0.00025 37.6 1.8 17 524-540 28-44 (246)
177 2z4s_A Chromosomal replication 46.2 7.4 0.00025 41.5 1.9 17 524-540 131-147 (440)
178 1kht_A Adenylate kinase; phosp 46.2 7.4 0.00025 35.4 1.7 15 526-540 6-20 (192)
179 4b4t_M 26S protease regulatory 46.0 7.2 0.00025 41.8 1.8 23 523-547 215-237 (434)
180 2qp9_X Vacuolar protein sortin 46.0 7.8 0.00027 40.0 2.0 18 523-540 84-101 (355)
181 1gvn_B Zeta; postsegregational 45.8 8.1 0.00028 38.7 2.1 15 526-540 36-50 (287)
182 2jlq_A Serine protease subunit 45.4 21 0.00073 37.9 5.4 22 526-547 22-43 (451)
183 1b0u_A Histidine permease; ABC 45.4 7.7 0.00026 38.4 1.8 22 523-546 32-53 (262)
184 4b4t_K 26S protease regulatory 45.3 7.6 0.00026 41.5 1.8 17 523-539 206-222 (428)
185 1um8_A ATP-dependent CLP prote 45.3 8 0.00027 40.0 2.0 18 523-540 72-89 (376)
186 1wp9_A ATP-dependent RNA helic 45.2 7.4 0.00025 40.4 1.7 41 256-296 96-139 (494)
187 2qgz_A Helicase loader, putati 45.1 7.8 0.00027 39.3 1.8 17 524-540 153-169 (308)
188 1sgw_A Putative ABC transporte 45.0 9.9 0.00034 36.5 2.4 22 523-546 35-56 (214)
189 2qby_B CDC6 homolog 3, cell di 44.9 7.6 0.00026 39.7 1.7 18 523-540 45-62 (384)
190 1fnn_A CDC6P, cell division co 44.9 7.8 0.00027 39.6 1.8 16 525-540 46-61 (389)
191 3d8b_A Fidgetin-like protein 1 44.6 7.9 0.00027 39.9 1.8 18 523-540 117-134 (357)
192 3kta_A Chromosome segregation 44.6 9.6 0.00033 34.6 2.2 19 524-542 27-45 (182)
193 4b4t_L 26S protease subunit RP 44.6 7.8 0.00027 41.6 1.8 17 523-539 215-231 (437)
194 4b4t_J 26S protease regulatory 44.4 8.3 0.00028 41.0 1.9 23 523-547 182-204 (405)
195 3h1t_A Type I site-specific re 44.4 13 0.00043 41.0 3.5 39 258-296 271-316 (590)
196 1y63_A LMAJ004144AAA protein; 44.3 8.5 0.00029 35.4 1.8 22 525-548 12-33 (184)
197 1g6h_A High-affinity branched- 44.3 9.6 0.00033 37.5 2.3 22 523-546 33-54 (257)
198 1mv5_A LMRA, multidrug resista 44.1 7.4 0.00025 38.0 1.4 21 524-546 29-49 (243)
199 1t6n_A Probable ATP-dependent 44.1 12 0.00042 35.0 3.0 36 261-296 134-172 (220)
200 1htw_A HI0065; nucleotide-bind 44.0 7.7 0.00026 35.4 1.4 20 526-547 36-55 (158)
201 2rhm_A Putative kinase; P-loop 44.0 8.1 0.00028 35.2 1.6 15 526-540 8-22 (193)
202 1cke_A CK, MSSA, protein (cyti 43.7 8.2 0.00028 36.4 1.6 20 525-546 7-26 (227)
203 1g8p_A Magnesium-chelatase 38 43.6 7.5 0.00026 39.3 1.4 17 524-540 46-62 (350)
204 2pze_A Cystic fibrosis transme 43.6 10 0.00034 36.6 2.3 22 523-546 34-55 (229)
205 1nlf_A Regulatory protein REPA 43.6 11 0.00037 37.2 2.6 21 522-542 29-49 (279)
206 4fcw_A Chaperone protein CLPB; 43.5 7.8 0.00027 38.4 1.5 16 525-540 49-64 (311)
207 4g1u_C Hemin import ATP-bindin 43.2 10 0.00035 37.6 2.3 22 523-546 37-58 (266)
208 2d2e_A SUFC protein; ABC-ATPas 43.2 10 0.00035 37.1 2.3 22 523-546 29-50 (250)
209 2z0m_A 337AA long hypothetical 43.2 22 0.00074 35.1 4.8 39 257-295 101-142 (337)
210 1rj9_A FTSY, signal recognitio 43.1 8.8 0.0003 39.0 1.8 16 525-540 104-119 (304)
211 2ghi_A Transport protein; mult 43.1 8.8 0.0003 37.9 1.8 22 523-546 46-67 (260)
212 1m7g_A Adenylylsulfate kinase; 43.1 4.6 0.00016 38.1 -0.3 29 512-540 12-42 (211)
213 1ji0_A ABC transporter; ATP bi 43.1 10 0.00035 36.8 2.3 22 523-546 32-53 (240)
214 1q0u_A Bstdead; DEAD protein, 43.0 6.8 0.00023 36.9 0.9 36 260-295 125-163 (219)
215 3gfo_A Cobalt import ATP-bindi 42.8 10 0.00036 37.8 2.3 22 523-546 34-55 (275)
216 1jjv_A Dephospho-COA kinase; P 42.6 9 0.00031 35.7 1.7 19 526-546 5-23 (206)
217 2ixe_A Antigen peptide transpo 42.6 9 0.00031 38.1 1.8 22 523-546 45-66 (271)
218 1rif_A DAR protein, DNA helica 42.6 29 0.00099 34.0 5.5 52 523-608 128-179 (282)
219 2olj_A Amino acid ABC transpor 42.5 9 0.00031 38.0 1.8 22 523-546 50-71 (263)
220 1cr0_A DNA primase/helicase; R 42.5 9.8 0.00034 37.8 2.1 20 523-542 35-54 (296)
221 2pjz_A Hypothetical protein ST 42.5 9.3 0.00032 37.9 1.8 22 523-546 30-51 (263)
222 3fvq_A Fe(3+) IONS import ATP- 42.3 8.9 0.0003 40.0 1.7 22 523-546 30-51 (359)
223 1ojl_A Transcriptional regulat 42.1 9.9 0.00034 38.3 2.0 18 523-540 25-42 (304)
224 3nwj_A ATSK2; P loop, shikimat 41.9 10 0.00035 37.4 2.0 18 523-540 48-65 (250)
225 2zu0_C Probable ATP-dependent 41.7 9.4 0.00032 37.8 1.8 22 523-546 46-67 (267)
226 3vfd_A Spastin; ATPase, microt 41.7 9.5 0.00032 39.7 1.9 18 523-540 148-165 (389)
227 1via_A Shikimate kinase; struc 41.6 9.6 0.00033 34.5 1.7 16 525-540 6-21 (175)
228 1vpl_A ABC transporter, ATP-bi 41.3 9.7 0.00033 37.6 1.8 22 523-546 41-62 (256)
229 2yz2_A Putative ABC transporte 41.3 9.7 0.00033 37.7 1.8 22 523-546 33-54 (266)
230 2ihy_A ABC transporter, ATP-bi 41.2 11 0.00039 37.6 2.3 22 523-546 47-68 (279)
231 2gza_A Type IV secretion syste 41.2 9.9 0.00034 39.4 1.9 22 523-546 175-196 (361)
232 1z47_A CYSA, putative ABC-tran 41.2 11 0.00038 39.2 2.3 22 523-546 41-62 (355)
233 2c9o_A RUVB-like 1; hexameric 41.0 9.5 0.00032 40.8 1.8 23 524-548 64-86 (456)
234 2nq2_C Hypothetical ABC transp 40.9 11 0.00039 36.9 2.2 22 523-546 31-52 (253)
235 2jaq_A Deoxyguanosine kinase; 40.9 9.9 0.00034 34.9 1.7 14 526-539 3-16 (205)
236 2wjy_A Regulator of nonsense t 40.9 32 0.0011 39.7 6.3 82 1-94 175-256 (800)
237 1g29_1 MALK, maltose transport 40.8 9.7 0.00033 39.9 1.8 22 523-546 29-50 (372)
238 2v9p_A Replication protein E1; 40.8 9.9 0.00034 38.7 1.7 22 523-546 126-147 (305)
239 4a2p_A RIG-I, retinoic acid in 40.7 13 0.00045 39.9 2.9 42 256-297 100-145 (556)
240 3sop_A Neuronal-specific septi 40.7 9 0.00031 38.1 1.4 20 525-546 4-23 (270)
241 3oiy_A Reverse gyrase helicase 40.6 10 0.00035 39.4 1.9 36 256-291 111-148 (414)
242 1hv8_A Putative ATP-dependent 40.6 11 0.00038 37.7 2.2 39 258-296 120-161 (367)
243 2qi9_C Vitamin B12 import ATP- 40.6 12 0.00041 36.8 2.3 22 523-546 26-47 (249)
244 1np6_A Molybdopterin-guanine d 40.6 10 0.00035 35.2 1.7 14 526-539 9-22 (174)
245 2it1_A 362AA long hypothetical 40.4 10 0.00034 39.7 1.8 22 523-546 29-50 (362)
246 3pvs_A Replication-associated 40.4 9.6 0.00033 40.9 1.7 17 524-540 51-67 (447)
247 1sxj_E Activator 1 40 kDa subu 40.2 10 0.00036 38.3 1.9 15 526-540 39-53 (354)
248 3eiq_A Eukaryotic initiation f 40.2 33 0.0011 35.0 5.8 42 254-295 152-196 (414)
249 3e1s_A Exodeoxyribonuclease V, 40.2 5.6 0.00019 44.2 -0.3 32 510-541 188-222 (574)
250 3cm0_A Adenylate kinase; ATP-b 40.2 10 0.00036 34.4 1.7 15 526-540 7-21 (186)
251 4gl2_A Interferon-induced heli 40.1 11 0.00039 42.1 2.3 70 510-608 6-79 (699)
252 2yyz_A Sugar ABC transporter, 40.1 10 0.00035 39.5 1.8 22 523-546 29-50 (359)
253 1v43_A Sugar-binding transport 39.9 10 0.00035 39.7 1.8 22 523-546 37-58 (372)
254 1s2m_A Putative ATP-dependent 39.6 33 0.0011 35.0 5.6 43 256-298 134-179 (400)
255 2pt7_A CAG-ALFA; ATPase, prote 39.6 11 0.00038 38.6 1.9 23 523-547 171-193 (330)
256 2db3_A ATP-dependent RNA helic 39.4 35 0.0012 35.8 5.9 43 254-296 172-217 (434)
257 2zan_A Vacuolar protein sortin 39.4 11 0.00036 40.4 1.8 18 523-540 167-184 (444)
258 3dkp_A Probable ATP-dependent 39.2 9.9 0.00034 36.4 1.4 38 259-296 147-189 (245)
259 3crv_A XPD/RAD3 related DNA he 39.2 32 0.0011 37.6 5.7 49 523-609 22-70 (551)
260 2ce7_A Cell division protein F 39.1 11 0.00037 41.0 1.8 23 523-547 49-71 (476)
261 2zts_A Putative uncharacterize 39.1 18 0.0006 34.3 3.2 23 523-545 30-52 (251)
262 2r44_A Uncharacterized protein 38.9 7.8 0.00027 39.1 0.6 18 523-540 46-63 (331)
263 3rlf_A Maltose/maltodextrin im 38.7 11 0.00038 39.7 1.8 22 523-546 29-50 (381)
264 3hu3_A Transitional endoplasmi 38.5 11 0.00037 41.0 1.8 18 523-540 238-255 (489)
265 4e22_A Cytidylate kinase; P-lo 38.3 12 0.0004 36.6 1.8 20 525-546 29-48 (252)
266 3fb4_A Adenylate kinase; psych 38.1 11 0.00039 35.1 1.6 15 526-540 3-17 (216)
267 1sxj_D Activator 1 41 kDa subu 38.0 12 0.00042 37.6 2.0 16 525-540 60-75 (353)
268 1sxj_C Activator 1 40 kDa subu 38.0 11 0.00037 38.3 1.6 15 526-540 49-63 (340)
269 1rz3_A Hypothetical protein rb 37.9 11 0.00039 35.1 1.6 15 526-540 25-39 (201)
270 2if2_A Dephospho-COA kinase; a 37.9 11 0.00039 34.8 1.6 15 526-540 4-18 (204)
271 3gd7_A Fusion complex of cysti 37.5 12 0.0004 39.6 1.7 22 523-546 47-68 (390)
272 1fuu_A Yeast initiation factor 37.5 29 0.00099 35.1 4.8 38 258-295 135-175 (394)
273 1tue_A Replication protein E1; 37.4 10 0.00035 36.7 1.1 15 526-540 61-75 (212)
274 2pez_A Bifunctional 3'-phospho 37.2 11 0.00038 34.1 1.4 19 526-546 8-26 (179)
275 4b4t_H 26S protease regulatory 37.2 11 0.00036 40.9 1.4 24 522-547 242-265 (467)
276 1e6c_A Shikimate kinase; phosp 37.2 12 0.00042 33.4 1.6 15 526-540 5-19 (173)
277 3aez_A Pantothenate kinase; tr 37.2 11 0.00038 38.3 1.5 15 526-540 93-107 (312)
278 3dl0_A Adenylate kinase; phosp 37.2 12 0.00041 35.0 1.6 15 526-540 3-17 (216)
279 1gku_B Reverse gyrase, TOP-RG; 37.1 27 0.00091 41.6 5.0 60 514-608 59-121 (1054)
280 4b4t_I 26S protease regulatory 37.0 12 0.00043 40.0 1.9 23 523-547 216-238 (437)
281 2oca_A DAR protein, ATP-depend 36.9 18 0.00063 38.6 3.3 41 258-298 201-241 (510)
282 2ykg_A Probable ATP-dependent 36.8 38 0.0013 37.7 6.0 56 523-608 28-83 (696)
283 2fwr_A DNA repair protein RAD2 36.7 14 0.00049 39.1 2.3 38 261-298 171-208 (472)
284 2yvu_A Probable adenylyl-sulfa 36.7 12 0.0004 34.3 1.4 15 526-540 16-30 (186)
285 2ze6_A Isopentenyl transferase 36.7 12 0.00042 36.5 1.6 15 526-540 4-18 (253)
286 2qt1_A Nicotinamide riboside k 36.6 12 0.00042 34.8 1.6 20 526-547 24-43 (207)
287 2plr_A DTMP kinase, probable t 36.5 13 0.00043 34.4 1.6 15 526-540 7-21 (213)
288 3jvv_A Twitching mobility prot 36.4 12 0.00039 39.0 1.5 16 525-540 125-140 (356)
289 2j0s_A ATP-dependent RNA helic 36.3 40 0.0014 34.5 5.6 41 256-296 150-193 (410)
290 3tbk_A RIG-I helicase domain; 36.3 13 0.00044 39.8 1.9 42 256-297 97-142 (555)
291 2bbs_A Cystic fibrosis transme 36.2 13 0.00044 37.5 1.7 22 523-546 64-85 (290)
292 3b9q_A Chloroplast SRP recepto 36.1 12 0.0004 37.9 1.5 16 525-540 102-117 (302)
293 2ewv_A Twitching motility prot 36.1 11 0.00039 39.2 1.4 17 524-540 137-153 (372)
294 1knx_A Probable HPR(Ser) kinas 36.0 18 0.00062 36.9 2.9 26 518-543 142-167 (312)
295 3m6a_A ATP-dependent protease 35.9 13 0.00043 41.0 1.7 18 523-540 108-125 (543)
296 2dhr_A FTSH; AAA+ protein, hex 35.8 13 0.00044 40.6 1.7 23 523-547 64-86 (499)
297 3pxg_A Negative regulator of g 35.6 15 0.00051 39.5 2.2 16 525-540 203-218 (468)
298 1tev_A UMP-CMP kinase; ploop, 35.5 13 0.00046 33.6 1.6 15 526-540 6-20 (196)
299 4a2q_A RIG-I, retinoic acid in 35.3 40 0.0014 38.6 5.9 56 523-608 263-318 (797)
300 3d31_A Sulfate/molybdate ABC t 35.2 9.1 0.00031 39.7 0.4 22 523-546 26-47 (348)
301 1zak_A Adenylate kinase; ATP:A 35.2 15 0.0005 34.7 1.9 16 525-540 7-22 (222)
302 2z0h_A DTMP kinase, thymidylat 35.1 14 0.00047 33.8 1.6 15 526-540 3-17 (197)
303 3pey_A ATP-dependent RNA helic 35.1 14 0.00047 37.5 1.8 38 259-296 119-159 (395)
304 2wwf_A Thymidilate kinase, put 35.0 14 0.00049 34.2 1.7 15 526-540 13-27 (212)
305 1odf_A YGR205W, hypothetical 3 34.9 19 0.00067 36.1 2.8 22 526-547 34-57 (290)
306 2bwj_A Adenylate kinase 5; pho 34.8 14 0.00047 33.8 1.6 15 526-540 15-29 (199)
307 2jeo_A Uridine-cytidine kinase 34.7 14 0.00047 35.7 1.6 15 526-540 28-42 (245)
308 2iyv_A Shikimate kinase, SK; t 34.7 16 0.00054 33.2 2.0 16 525-540 4-19 (184)
309 2v54_A DTMP kinase, thymidylat 34.6 15 0.0005 33.8 1.8 20 526-547 7-26 (204)
310 2c95_A Adenylate kinase 1; tra 34.6 15 0.0005 33.5 1.7 15 526-540 12-26 (196)
311 1xjc_A MOBB protein homolog; s 34.6 14 0.00049 34.1 1.6 19 526-545 7-25 (169)
312 2p5t_B PEZT; postsegregational 34.4 11 0.00038 36.7 0.9 15 526-540 35-49 (253)
313 2oap_1 GSPE-2, type II secreti 34.4 14 0.00049 40.3 1.9 18 523-540 260-277 (511)
314 3fmo_B ATP-dependent RNA helic 34.4 7 0.00024 39.3 -0.6 37 259-295 208-248 (300)
315 1qf9_A UMP/CMP kinase, protein 34.3 14 0.00049 33.4 1.6 15 526-540 9-23 (194)
316 3e70_C DPA, signal recognition 34.2 13 0.00044 38.2 1.4 15 525-539 131-145 (328)
317 3lda_A DNA repair protein RAD5 34.2 17 0.00059 38.3 2.4 19 523-541 178-196 (400)
318 1sxj_A Activator 1 95 kDa subu 34.0 14 0.00049 40.1 1.8 17 524-540 78-94 (516)
319 3tui_C Methionine import ATP-b 34.0 15 0.0005 38.5 1.8 22 523-546 54-75 (366)
320 2pbr_A DTMP kinase, thymidylat 33.9 15 0.00052 33.3 1.7 15 526-540 3-17 (195)
321 4gl2_A Interferon-induced heli 33.8 14 0.00048 41.3 1.8 40 256-295 101-149 (699)
322 2pt5_A Shikimate kinase, SK; a 33.6 15 0.00053 32.6 1.7 15 526-540 3-17 (168)
323 3nh6_A ATP-binding cassette SU 33.5 10 0.00034 38.7 0.4 22 523-546 80-101 (306)
324 1ukz_A Uridylate kinase; trans 33.4 15 0.00052 33.9 1.6 15 526-540 18-32 (203)
325 2vli_A Antibiotic resistance p 33.4 15 0.00051 33.1 1.6 19 526-546 8-26 (183)
326 1wp9_A ATP-dependent RNA helic 33.4 46 0.0016 34.2 5.6 50 525-608 25-74 (494)
327 2f1r_A Molybdopterin-guanine d 33.3 7.7 0.00026 35.9 -0.5 15 526-540 5-19 (171)
328 1zuh_A Shikimate kinase; alpha 33.2 16 0.00054 32.7 1.7 16 525-540 9-24 (168)
329 1zd8_A GTP:AMP phosphotransfer 32.9 15 0.00052 34.8 1.6 15 526-540 10-24 (227)
330 3o8b_A HCV NS3 protease/helica 32.9 21 0.00071 40.4 2.9 41 258-299 294-334 (666)
331 3nbx_X ATPase RAVA; AAA+ ATPas 32.8 15 0.00051 40.0 1.7 17 523-539 41-57 (500)
332 1pzn_A RAD51, DNA repair and r 32.7 18 0.00062 37.3 2.2 20 523-542 131-150 (349)
333 1nn5_A Similar to deoxythymidy 32.6 16 0.00056 33.8 1.7 15 526-540 12-26 (215)
334 2px0_A Flagellar biosynthesis 32.4 16 0.00055 36.7 1.8 18 524-541 106-123 (296)
335 1ko7_A HPR kinase/phosphatase; 32.3 23 0.00079 36.2 2.9 27 518-544 139-165 (314)
336 2zej_A Dardarin, leucine-rich 32.2 16 0.00056 33.0 1.6 14 526-539 5-18 (184)
337 2vl7_A XPD; helicase, unknown 32.1 44 0.0015 36.4 5.4 48 523-608 26-73 (540)
338 3k1j_A LON protease, ATP-depen 31.9 17 0.00057 40.4 1.9 18 523-540 60-77 (604)
339 2f9l_A RAB11B, member RAS onco 31.6 17 0.00058 33.4 1.6 13 526-538 8-20 (199)
340 1jr3_A DNA polymerase III subu 31.5 17 0.00058 36.8 1.8 16 525-540 40-55 (373)
341 1oxx_K GLCV, glucose, ABC tran 31.5 9.2 0.00031 39.7 -0.3 22 523-546 31-52 (353)
342 3bh0_A DNAB-like replicative h 31.5 18 0.00061 36.6 1.9 22 523-544 68-89 (315)
343 1oix_A RAS-related protein RAB 31.3 17 0.00058 33.3 1.6 14 526-539 32-45 (191)
344 2cdn_A Adenylate kinase; phosp 31.3 17 0.00059 33.5 1.6 15 526-540 23-37 (201)
345 3fho_A ATP-dependent RNA helic 31.1 35 0.0012 36.7 4.3 39 258-296 232-273 (508)
346 2wji_A Ferrous iron transport 31.1 18 0.00061 32.1 1.6 13 526-538 6-18 (165)
347 2gk6_A Regulator of nonsense t 31.1 61 0.0021 36.0 6.4 80 3-94 1-80 (624)
348 1ypw_A Transitional endoplasmi 31.0 15 0.00051 42.5 1.3 23 523-547 238-260 (806)
349 2r2a_A Uncharacterized protein 31.0 24 0.00081 33.4 2.6 21 526-546 8-28 (199)
350 2og2_A Putative signal recogni 30.7 16 0.00056 38.0 1.5 16 525-540 159-174 (359)
351 2v6i_A RNA helicase; membrane, 30.7 23 0.0008 37.4 2.7 24 523-546 2-25 (431)
352 3fht_A ATP-dependent RNA helic 30.5 10 0.00034 39.0 -0.2 36 259-294 141-180 (412)
353 1gtv_A TMK, thymidylate kinase 30.4 9.1 0.00031 35.6 -0.5 15 526-540 3-17 (214)
354 1uf9_A TT1252 protein; P-loop, 30.3 18 0.00063 33.1 1.6 15 526-540 11-25 (203)
355 1g41_A Heat shock protein HSLU 30.2 19 0.00065 38.6 2.0 18 523-540 50-67 (444)
356 3o8b_A HCV NS3 protease/helica 30.1 42 0.0014 37.9 4.8 24 523-546 232-255 (666)
357 1sq5_A Pantothenate kinase; P- 30.1 16 0.00056 36.7 1.3 15 526-540 83-97 (308)
358 2zr9_A Protein RECA, recombina 30.0 23 0.00078 36.6 2.4 22 523-544 61-82 (349)
359 1xti_A Probable ATP-dependent 30.0 17 0.00059 36.9 1.5 36 261-296 128-166 (391)
360 2z43_A DNA repair and recombin 29.9 23 0.00078 35.9 2.4 22 523-544 107-128 (324)
361 3tqc_A Pantothenate kinase; bi 29.8 18 0.00062 37.0 1.6 15 526-540 95-109 (321)
362 1aky_A Adenylate kinase; ATP:A 29.8 19 0.00064 33.9 1.6 15 526-540 7-21 (220)
363 2chq_A Replication factor C sm 29.8 20 0.00068 35.3 1.9 15 526-540 41-55 (319)
364 3pxi_A Negative regulator of g 29.6 21 0.0007 40.8 2.2 16 525-540 203-218 (758)
365 3tlx_A Adenylate kinase 2; str 29.6 19 0.00064 34.8 1.6 15 526-540 32-46 (243)
366 3a4m_A L-seryl-tRNA(SEC) kinas 29.6 19 0.00064 35.2 1.6 15 526-540 7-21 (260)
367 1pui_A ENGB, probable GTP-bind 29.4 19 0.00065 33.1 1.6 13 526-538 29-41 (210)
368 1lw7_A Transcriptional regulat 29.2 14 0.0005 38.0 0.8 19 526-546 173-191 (365)
369 2xau_A PRE-mRNA-splicing facto 29.2 57 0.002 37.4 5.8 31 508-538 93-124 (773)
370 2ce2_X GTPase HRAS; signaling 29.1 20 0.00068 30.9 1.6 14 526-539 6-19 (166)
371 1iqp_A RFCS; clamp loader, ext 29.1 19 0.00065 35.6 1.6 16 525-540 48-63 (327)
372 2olr_A Phosphoenolpyruvate car 29.0 20 0.00068 39.4 1.8 17 524-540 242-258 (540)
373 1yqt_A RNAse L inhibitor; ATP- 29.0 23 0.00079 38.8 2.4 22 523-546 47-68 (538)
374 2ykg_A Probable ATP-dependent 28.9 19 0.00064 40.2 1.7 42 256-297 106-151 (696)
375 1vht_A Dephospho-COA kinase; s 28.9 20 0.00069 33.5 1.7 15 526-540 7-21 (218)
376 1e4v_A Adenylate kinase; trans 28.8 20 0.00067 33.6 1.6 15 526-540 3-17 (214)
377 1z3i_X Similar to RAD54-like; 28.6 25 0.00087 39.3 2.7 61 261-321 170-234 (644)
378 1svm_A Large T antigen; AAA+ f 28.6 20 0.0007 37.5 1.8 20 525-546 171-190 (377)
379 1nij_A Hypothetical protein YJ 28.5 21 0.00073 36.0 1.9 14 526-539 7-20 (318)
380 1p9r_A General secretion pathw 28.4 19 0.00064 38.3 1.5 16 525-540 169-184 (418)
381 2v1x_A ATP-dependent DNA helic 28.4 42 0.0015 37.1 4.4 23 523-545 59-81 (591)
382 2r8r_A Sensor protein; KDPD, P 28.4 21 0.00072 34.8 1.7 17 526-542 9-25 (228)
383 2vp4_A Deoxynucleoside kinase; 28.2 20 0.00067 34.2 1.5 19 526-546 23-41 (230)
384 1z2a_A RAS-related protein RAB 28.0 22 0.00074 31.0 1.6 19 526-545 8-26 (168)
385 2yhs_A FTSY, cell division pro 27.9 19 0.00064 39.3 1.4 16 525-540 295-310 (503)
386 2npi_A Protein CLP1; CLP1-PCF1 27.7 22 0.00075 38.2 1.9 23 523-547 138-160 (460)
387 1v5w_A DMC1, meiotic recombina 27.4 21 0.00073 36.5 1.7 21 524-544 123-143 (343)
388 2xb4_A Adenylate kinase; ATP-b 27.4 22 0.00076 33.7 1.7 15 526-540 3-17 (223)
389 1ii2_A Phosphoenolpyruvate car 27.2 22 0.00075 39.0 1.8 17 524-540 214-230 (524)
390 2obl_A ESCN; ATPase, hydrolase 27.0 26 0.00089 36.2 2.2 24 523-548 71-94 (347)
391 4a2q_A RIG-I, retinoic acid in 27.0 39 0.0013 38.7 3.9 43 255-297 340-386 (797)
392 2r6a_A DNAB helicase, replicat 26.9 24 0.00081 37.6 2.0 22 523-544 203-224 (454)
393 2b8t_A Thymidine kinase; deoxy 26.6 29 0.001 33.4 2.4 22 525-546 14-35 (223)
394 2dyk_A GTP-binding protein; GT 26.6 24 0.00081 30.5 1.6 20 526-546 4-23 (161)
395 3umf_A Adenylate kinase; rossm 26.5 24 0.00082 33.9 1.7 15 526-540 32-46 (217)
396 2i1q_A DNA repair and recombin 26.5 25 0.00087 35.3 2.0 23 523-545 98-120 (322)
397 1w36_D RECD, exodeoxyribonucle 26.5 27 0.00093 38.8 2.4 19 523-541 164-182 (608)
398 3fmp_B ATP-dependent RNA helic 26.4 14 0.0005 39.2 0.1 35 260-294 209-247 (479)
399 4f92_B U5 small nuclear ribonu 26.4 1E+02 0.0035 38.7 7.8 62 523-608 95-156 (1724)
400 2wsm_A Hydrogenase expression/ 26.3 24 0.0008 32.9 1.6 19 526-545 33-51 (221)
401 1f2t_A RAD50 ABC-ATPase; DNA d 26.3 24 0.00083 31.4 1.6 19 525-543 25-43 (149)
402 1ltq_A Polynucleotide kinase; 26.2 23 0.00079 34.9 1.6 15 526-540 5-19 (301)
403 3sr0_A Adenylate kinase; phosp 26.2 24 0.00081 33.5 1.6 15 526-540 3-17 (206)
404 1ak2_A Adenylate kinase isoenz 26.1 24 0.00081 33.6 1.6 15 526-540 19-33 (233)
405 2wjg_A FEOB, ferrous iron tran 26.0 25 0.00084 31.5 1.6 14 526-539 10-23 (188)
406 2hf9_A Probable hydrogenase ni 25.8 24 0.00082 32.9 1.6 20 526-546 41-60 (226)
407 2q6t_A DNAB replication FORK h 25.8 25 0.00087 37.3 1.9 21 524-544 201-221 (444)
408 3r20_A Cytidylate kinase; stru 25.8 24 0.00083 34.3 1.6 16 525-540 11-26 (233)
409 2yl4_A ATP-binding cassette SU 25.7 27 0.00092 38.6 2.2 22 523-546 370-391 (595)
410 1sxj_B Activator 1 37 kDa subu 25.7 24 0.00082 34.7 1.6 15 526-540 45-59 (323)
411 3q72_A GTP-binding protein RAD 25.6 25 0.00085 30.6 1.6 19 526-545 5-23 (166)
412 3u4q_B ATP-dependent helicase/ 25.6 25 0.00086 42.2 2.1 20 526-545 4-23 (1166)
413 1u8z_A RAS-related protein RAL 25.5 26 0.00088 30.3 1.6 19 526-545 7-25 (168)
414 1w5s_A Origin recognition comp 25.5 18 0.00061 37.2 0.7 16 525-540 52-69 (412)
415 2qnr_A Septin-2, protein NEDD5 25.4 22 0.00076 35.7 1.3 14 526-539 21-34 (301)
416 2gj8_A MNME, tRNA modification 25.4 25 0.00086 31.5 1.6 13 526-538 7-19 (172)
417 1vma_A Cell division protein F 25.3 23 0.00078 35.9 1.4 16 526-541 107-122 (306)
418 1kao_A RAP2A; GTP-binding prot 25.3 26 0.00089 30.2 1.6 19 526-545 6-24 (167)
419 3be4_A Adenylate kinase; malar 25.3 25 0.00085 33.1 1.6 15 526-540 8-22 (217)
420 3ake_A Cytidylate kinase; CMP 25.3 25 0.00087 32.2 1.6 15 526-540 5-19 (208)
421 3u61_B DNA polymerase accessor 25.2 23 0.00078 35.4 1.4 15 526-540 51-65 (324)
422 2qag_B Septin-6, protein NEDD5 25.1 29 0.00098 37.1 2.2 18 526-545 45-62 (427)
423 1r8s_A ADP-ribosylation factor 25.0 27 0.00091 30.3 1.6 20 526-546 3-22 (164)
424 3con_A GTPase NRAS; structural 24.9 26 0.0009 31.4 1.6 19 526-545 24-42 (190)
425 3q85_A GTP-binding protein REM 24.9 27 0.00091 30.5 1.6 18 526-544 5-22 (169)
426 3a8t_A Adenylate isopentenyltr 24.9 27 0.00091 36.1 1.8 16 526-541 43-58 (339)
427 1ek0_A Protein (GTP-binding pr 24.9 27 0.00092 30.3 1.6 19 526-545 6-24 (170)
428 2f6r_A COA synthase, bifunctio 24.9 25 0.00087 34.8 1.6 15 526-540 78-92 (281)
429 1tf7_A KAIC; homohexamer, hexa 24.8 32 0.0011 37.3 2.6 20 523-542 39-58 (525)
430 4f92_B U5 small nuclear ribonu 24.8 90 0.0031 39.2 6.8 63 512-607 927-993 (1724)
431 2ged_A SR-beta, signal recogni 24.7 27 0.00091 31.5 1.6 21 525-546 50-70 (193)
432 3b60_A Lipid A export ATP-bind 24.7 25 0.00086 38.8 1.7 22 523-546 369-390 (582)
433 3qf4_B Uncharacterized ABC tra 24.7 29 0.00098 38.5 2.2 22 523-546 381-402 (598)
434 1c1y_A RAS-related protein RAP 24.7 27 0.00093 30.3 1.6 19 526-545 6-24 (167)
435 1z08_A RAS-related protein RAB 24.7 28 0.00094 30.4 1.7 19 526-545 9-27 (170)
436 3b5x_A Lipid A export ATP-bind 24.6 26 0.0009 38.6 1.8 22 523-546 369-390 (582)
437 1uj2_A Uridine-cytidine kinase 24.5 26 0.0009 33.8 1.6 15 526-540 25-39 (252)
438 1r6b_X CLPA protein; AAA+, N-t 24.5 26 0.00089 39.8 1.8 17 524-540 208-224 (758)
439 2nzj_A GTP-binding protein REM 24.3 28 0.00095 30.5 1.6 19 526-545 7-25 (175)
440 1g5t_A COB(I)alamin adenosyltr 24.3 55 0.0019 31.0 3.8 38 280-317 118-162 (196)
441 4a82_A Cystic fibrosis transme 24.3 26 0.0009 38.6 1.8 22 523-546 367-388 (578)
442 1ytm_A Phosphoenolpyruvate car 24.2 27 0.00093 38.3 1.8 17 524-540 236-252 (532)
443 1g16_A RAS-related protein SEC 24.0 28 0.00095 30.3 1.6 19 526-545 6-24 (170)
444 1ky3_A GTP-binding protein YPT 24.0 28 0.00097 30.6 1.6 19 526-545 11-29 (182)
445 2erx_A GTP-binding protein DI- 23.9 29 0.00098 30.2 1.6 19 526-545 6-24 (172)
446 2fn4_A P23, RAS-related protei 23.8 28 0.00096 30.6 1.6 20 526-546 12-31 (181)
447 1wms_A RAB-9, RAB9, RAS-relate 23.8 29 0.00098 30.6 1.6 19 526-545 10-28 (177)
448 1nrj_B SR-beta, signal recogni 23.6 29 0.00097 32.1 1.6 19 526-545 15-33 (218)
449 1u0l_A Probable GTPase ENGC; p 23.6 29 0.001 34.7 1.8 21 523-545 169-189 (301)
450 1u94_A RECA protein, recombina 23.5 35 0.0012 35.3 2.5 22 523-544 63-84 (356)
451 3cf2_A TER ATPase, transitiona 23.5 28 0.00096 40.2 1.8 24 523-548 238-261 (806)
452 3crm_A TRNA delta(2)-isopenten 23.4 30 0.001 35.4 1.9 16 526-541 8-23 (323)
453 1r2q_A RAS-related protein RAB 23.3 30 0.001 30.0 1.6 19 526-545 9-27 (170)
454 3ihw_A Centg3; RAS, centaurin, 23.3 30 0.001 31.3 1.7 19 526-545 23-41 (184)
455 3hr8_A Protein RECA; alpha and 23.2 32 0.0011 35.7 2.0 22 523-544 61-82 (356)
456 3tw8_B RAS-related protein RAB 23.1 31 0.001 30.4 1.7 19 526-545 12-30 (181)
457 2orw_A Thymidine kinase; TMTK, 23.0 42 0.0014 30.9 2.7 20 525-544 5-24 (184)
458 2dpy_A FLII, flagellum-specifi 23.0 29 0.00099 37.0 1.7 24 523-548 157-180 (438)
459 4a15_A XPD helicase, ATP-depen 23.0 1E+02 0.0036 34.2 6.3 53 523-609 22-74 (620)
460 2hxs_A RAB-26, RAS-related pro 22.9 31 0.001 30.4 1.6 20 526-546 9-28 (178)
461 2lkc_A Translation initiation 22.8 31 0.0011 30.3 1.7 20 525-545 10-29 (178)
462 1q3t_A Cytidylate kinase; nucl 22.8 31 0.0011 32.8 1.8 16 525-540 18-33 (236)
463 3qks_A DNA double-strand break 22.7 30 0.001 32.4 1.6 19 525-543 25-43 (203)
464 2rcn_A Probable GTPase ENGC; Y 22.7 31 0.001 35.9 1.8 22 523-546 215-236 (358)
465 2y8e_A RAB-protein 6, GH09086P 22.7 31 0.001 30.3 1.6 19 526-545 17-35 (179)
466 4eaq_A DTMP kinase, thymidylat 22.7 31 0.0011 33.1 1.7 14 526-539 29-42 (229)
467 2vhj_A Ntpase P4, P4; non- hyd 22.6 34 0.0012 35.2 2.1 22 523-544 123-144 (331)
468 1upt_A ARL1, ADP-ribosylation 22.5 32 0.0011 30.0 1.6 20 526-546 10-29 (171)
469 3i5x_A ATP-dependent RNA helic 22.4 33 0.0011 37.1 2.1 37 259-295 199-239 (563)
470 3t1o_A Gliding protein MGLA; G 22.3 40 0.0014 30.1 2.3 19 526-546 17-35 (198)
471 3vkw_A Replicase large subunit 22.3 70 0.0024 34.2 4.5 18 590-607 188-205 (446)
472 1moz_A ARL1, ADP-ribosylation 22.3 29 0.001 30.8 1.4 19 526-545 21-39 (183)
473 3qf4_A ABC transporter, ATP-bi 22.2 30 0.001 38.3 1.7 22 523-546 369-390 (587)
474 3cbq_A GTP-binding protein REM 22.2 32 0.0011 31.5 1.6 18 526-544 26-43 (195)
475 1w1w_A Structural maintenance 22.1 32 0.0011 36.2 1.8 19 524-542 27-45 (430)
476 1j3b_A ATP-dependent phosphoen 22.0 29 0.00098 38.1 1.4 16 525-540 227-242 (529)
477 1xx6_A Thymidine kinase; NESG, 22.0 42 0.0014 31.4 2.4 19 526-544 11-29 (191)
478 3bc1_A RAS-related protein RAB 21.9 33 0.0011 30.5 1.6 19 526-545 14-32 (195)
479 3qf7_A RAD50; ABC-ATPase, ATPa 21.9 31 0.0011 35.7 1.6 16 525-540 25-40 (365)
480 3bwd_D RAC-like GTP-binding pr 21.8 33 0.0011 30.3 1.6 19 526-545 11-29 (182)
481 1mh1_A RAC1; GTP-binding, GTPa 21.8 33 0.0011 30.4 1.6 19 526-545 8-26 (186)
482 3lxx_A GTPase IMAP family memb 21.8 32 0.0011 32.6 1.6 14 526-539 32-45 (239)
483 4ag6_A VIRB4 ATPase, type IV s 21.7 45 0.0016 34.4 2.9 20 523-542 35-54 (392)
484 1qvr_A CLPB protein; coiled co 21.7 31 0.0011 39.9 1.8 15 525-539 193-207 (854)
485 2v3c_C SRP54, signal recogniti 21.7 38 0.0013 36.0 2.3 17 525-541 101-117 (432)
486 4a2w_A RIG-I, retinoic acid in 21.7 72 0.0025 37.3 4.9 56 523-608 263-318 (936)
487 3mwy_W Chromo domain-containin 21.7 32 0.0011 39.5 1.9 63 260-322 344-410 (800)
488 3exa_A TRNA delta(2)-isopenten 21.6 34 0.0012 35.0 1.9 16 526-541 6-21 (322)
489 2qag_C Septin-7; cell cycle, c 21.6 31 0.001 36.6 1.5 12 527-538 35-46 (418)
490 3euj_A Chromosome partition pr 21.6 31 0.0011 37.4 1.6 19 526-546 32-50 (483)
491 1a7j_A Phosphoribulokinase; tr 21.6 32 0.0011 34.4 1.6 15 526-540 8-22 (290)
492 1gm5_A RECG; helicase, replica 21.6 1.5E+02 0.0051 34.0 7.4 32 261-294 471-502 (780)
493 1fzq_A ADP-ribosylation factor 21.6 33 0.0011 30.8 1.6 19 526-545 19-37 (181)
494 1svi_A GTP-binding protein YSX 21.5 33 0.0011 30.8 1.6 20 526-546 26-45 (195)
495 2g6b_A RAS-related protein RAB 21.5 34 0.0012 30.2 1.6 19 526-545 13-31 (180)
496 1z0j_A RAB-22, RAS-related pro 21.5 34 0.0012 29.7 1.6 20 526-546 9-28 (170)
497 2efe_B Small GTP-binding prote 21.5 34 0.0012 30.2 1.7 19 526-545 15-33 (181)
498 2oil_A CATX-8, RAS-related pro 21.5 34 0.0012 30.8 1.6 20 526-546 28-47 (193)
499 3pqc_A Probable GTP-binding pr 21.4 33 0.0011 30.6 1.6 20 526-546 26-45 (195)
500 1z0f_A RAB14, member RAS oncog 21.4 34 0.0012 30.0 1.6 19 526-545 18-36 (179)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1e-41 Score=389.67 Aligned_cols=261 Identities=23% Similarity=0.226 Sum_probs=204.2
Q ss_pred HHHHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccc
Q 038017 253 LLKDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVS 329 (610)
Q Consensus 253 ~i~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~ 329 (610)
......+..++||++|+++++.. ..+....||+||||||+|++|+++++||. +++++||||||+||||++.+..+
T Consensus 334 ~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a 411 (646)
T 4b3f_X 334 AAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKA 411 (646)
T ss_dssp HHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHH
T ss_pred HHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhh
Confidence 34556788999999999887643 23456689999999999999999999997 57999999999999999999888
Q ss_pred cccccccCHHHHHHhcC--CCccccccccCCchhhhhcchhhhcCCCCccCccccccccccccC---CCCCCCCeEEEEe
Q 038017 330 GEAYFGRSLFERLSYLG--HSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFL---PGPMYGPYAFINV 404 (610)
Q Consensus 330 ~~~~l~~SLFeRL~~~g--~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~---~~~~~~p~~fidv 404 (610)
...+++.|+|+||...+ .+.++|++||||||+|++|+|..||+|+|.+++++..+....... ......|+.|+|+
T Consensus 412 ~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~ 491 (646)
T 4b3f_X 412 ALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT 491 (646)
T ss_dssp HHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEEC
T ss_pred hhccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEec
Confidence 89999999999999764 556799999999999999999999999999999887655432211 1112358999999
Q ss_pred CCCe----eeecCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeeccccccCCCCCccccccccccc
Q 038017 405 FGGR----EEFIEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNESGSDLSGAAFDCRSYV 472 (610)
Q Consensus 405 ~~g~----e~~~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~~~~~~~v~tvD~~qg~ 472 (610)
..+. ++..+.|+.|..||++|+++++. ..|+|++||++|+..|+-. +. ....++++.|||+|||+
T Consensus 492 ~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~-l~--~~~~~i~v~TVd~fQG~ 568 (646)
T 4b3f_X 492 AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQS-LV--HRHPELEIKSVDGFQGR 568 (646)
T ss_dssp TTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHH-HT--TTCTTCEEEEGGGGTTC
T ss_pred CCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHH-HH--HhCCCCEECChhhcccc
Confidence 5431 22378899999999999999986 3688889999988888632 22 12356788999999999
Q ss_pred ccccccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCceE
Q 038017 473 ENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRSTF 527 (610)
Q Consensus 473 e~s~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s~~ 527 (610)
| ++.++++.++++..+-++++ .+.+ ++|||+|||++.+|++|+...
T Consensus 569 E----~dvII~S~vrsn~~~~iGFl-~~~r----RlNVAlTRAk~~liivGn~~~ 614 (646)
T 4b3f_X 569 E----KEAVILSFVRSNRKGEVGFL-AEDR----RINVAVTRARRHVAVICDSRT 614 (646)
T ss_dssp C----EEEEEEECCCCCTTCCCCST-TCHH----HHHHHHHTEEEEEEEEECHHH
T ss_pred c----CCEEEEEeccCCCCCCcccc-CCcC----cEEeEhhhhhCeEEEEEchHH
Confidence 9 55555666677776667765 4443 399999999999988866443
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=2e-35 Score=336.26 Aligned_cols=259 Identities=27% Similarity=0.342 Sum_probs=197.0
Q ss_pred HHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccccccccc
Q 038017 253 LLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEA 332 (610)
Q Consensus 253 ~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~ 332 (610)
.+...+++.++||+||+++++.. .+....||+||||||+|++++++++|+.. +++++||||||+||||++.+..+...
T Consensus 311 ~~~~~~l~~~~vI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~ 388 (624)
T 2gk6_A 311 TAERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKA 388 (624)
T ss_dssp HHHHHHHHTCSEEEEETGGGGCG-GGTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHH
T ss_pred HHHHHHHhcCCEEEEcChhhcch-hhhcCCCCEEEEecccccCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHc
Confidence 34567899999999999987643 34556899999999999999999999975 57899999999999999988777778
Q ss_pred ccccCHHHHHHhcCCCccccccccCCchhhhhcchhhhcCCCCccCcccccccccc--ccCCCCCCCCeEEEEeCCCeee
Q 038017 333 YFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEK--QFLPGPMYGPYAFINVFGGREE 410 (610)
Q Consensus 333 ~l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~--~~~~~~~~~p~~fidv~~g~e~ 410 (610)
+++.|+|+||...|.+.++|++||||||+|++|+|..||+|+|.+++.+..+.... ..++.+ ..|+.|+++ .|.++
T Consensus 389 gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~-~~p~~~~~~-~g~~~ 466 (624)
T 2gk6_A 389 GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP-DKPMFFYVT-QGQEE 466 (624)
T ss_dssp TTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSST-TCCEEEEEC-CCCEE
T ss_pred CCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCC-CCCEEEEEc-CCcce
Confidence 89999999999999888999999999999999999999999999887665443221 111222 368999999 66655
Q ss_pred e--cCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeecccccc-----CCCCCcccccccccccccc
Q 038017 411 F--IEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNE-----SGSDLSGAAFDCRSYVENS 475 (610)
Q Consensus 411 ~--~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~-----~~~~~~v~tvD~~qg~e~s 475 (610)
. .+.|+.|..||+.|+++++. ..|+|++||++|+..|+-. +.... ....+.+.|||+|||.|.+
T Consensus 467 ~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItpy~~Q~~~i~~~-l~~~~~~~~~~~~~v~v~TVd~fQG~E~d 545 (624)
T 2gk6_A 467 IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQY-MQFSGSLHTKLYQEVEIASVDAFQGREKD 545 (624)
T ss_dssp CCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECSCHHHHHHHHHH-HHHSCSSCHHHHHHSEEECHHHHTTCCEE
T ss_pred ecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCHHHHHHHHHH-HHhhccccccccCceEEechhhcCCcccC
Confidence 4 68899999999999999876 3677888888887766521 11110 1134668899999999944
Q ss_pred cccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCc
Q 038017 476 NVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRS 525 (610)
Q Consensus 476 ~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s 525 (610)
.++++..++...+-.+++ .+.+ .+||++|||++.++++++.
T Consensus 546 ----vVIls~vrs~~~~~~gfl-~~~~----rlnVAlTRAk~~L~ivg~~ 586 (624)
T 2gk6_A 546 ----FIILSCVRANEHQGIGFL-NDPR----RLNVALTRARYGVIIVGNP 586 (624)
T ss_dssp ----EEEEEECC------CCTT-TCHH----HHHHHTTSEEEEEEEEECH
T ss_pred ----EEEEEeecCCCCCCcccc-CCcc----eeeeehhhhhCcEEEEECH
Confidence 445555555544334444 4443 4999999999998777543
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=7.3e-35 Score=338.85 Aligned_cols=259 Identities=27% Similarity=0.347 Sum_probs=201.1
Q ss_pred HHHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCccccccccccc
Q 038017 253 LLKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEA 332 (610)
Q Consensus 253 ~i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~ 332 (610)
.+...+++.++||+||+++++.. .+....||+||||||+|+++++.++|+.. +++++||||||+||||++.+..+...
T Consensus 487 ~~~~~~l~~a~VI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QLpPvv~s~~a~~~ 564 (800)
T 2wjy_A 487 TAERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKA 564 (800)
T ss_dssp HHHHHHHHHCSEEEEETGGGGCT-TTTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCCCHHHHHT
T ss_pred HHHHhhhccCCEEEEchhhhCCh-hhhcCCCCEEEEECCCCCCcHHHHHHHHh-cCCeEEEecccccCCCeecchhhhhc
Confidence 34567899999999999987753 34456899999999999999999999975 57999999999999999988777778
Q ss_pred ccccCHHHHHHhcCCCccccccccCCchhhhhcchhhhcCCCCccCcccccccccc--ccCCCCCCCCeEEEEeCCCeee
Q 038017 333 YFGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEK--QFLPGPMYGPYAFINVFGGREE 410 (610)
Q Consensus 333 ~l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~--~~~~~~~~~p~~fidv~~g~e~ 410 (610)
+++.|+|+||...|.+.++|++||||||+|++|+|..||+|+|.+++.+..+.... ..++.+ ..|+.|+++ .|.++
T Consensus 565 gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~-~~p~~f~~~-~g~e~ 642 (800)
T 2wjy_A 565 GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP-DKPMFFYVT-QGQEE 642 (800)
T ss_dssp TTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSST-TSCEEEEEC-CCCCE
T ss_pred CcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCC-CCCEEEEEc-CCcee
Confidence 89999999999999888999999999999999999999999999887665443221 111222 468999999 56554
Q ss_pred e--cCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeecccccc-----CCCCCcccccccccccccc
Q 038017 411 F--IEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADNE-----SGSDLSGAAFDCRSYVENS 475 (610)
Q Consensus 411 ~--~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~~-----~~~~~~v~tvD~~qg~e~s 475 (610)
. .+.|+.|..||+.|+++++. ..|+|++||++|+..|+-. +.... ....+.+.|||+|||.|.
T Consensus 643 ~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~-L~~~~~~~~~~~~~v~V~TVd~fQG~E~- 720 (800)
T 2wjy_A 643 IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQY-MQFSGSLHTKLYQEVEIASVDAFQGREK- 720 (800)
T ss_dssp ECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHH-HHHHCSSCHHHHHTSEEECGGGGTTCCE-
T ss_pred ecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHH-HHhcCcccccccCceEEccccccCCCcC-
Confidence 3 68899999999999999886 3678888888887776521 11111 113567899999999994
Q ss_pred cccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCCc
Q 038017 476 NVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPRS 525 (610)
Q Consensus 476 ~v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~s 525 (610)
+.++++..++...+-.+++ .+.+ ++||++|||++.++++++.
T Consensus 721 ---dvVIlS~vrs~~~~~~gfl-~d~r----rLNVAlTRAk~~LiIvG~~ 762 (800)
T 2wjy_A 721 ---DFIILSCVRANEHQGIGFL-NDPR----RLNVALTRARYGVIIVGNP 762 (800)
T ss_dssp ---EEEEEECCCCSCCCCCGGG-TCHH----HHHHHHTSEEEEEEEEECH
T ss_pred ---CEEEEEecCCCCccccccc-cCcc----hhhhhHHhhhccEEEEECH
Confidence 4445555555544334444 4443 4999999999998887553
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=335.52 Aligned_cols=256 Identities=25% Similarity=0.329 Sum_probs=198.5
Q ss_pred HHHHHhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccccccc
Q 038017 254 LKDFCFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAY 333 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~ 333 (610)
....+++.++||++|+.++... .+.. .||+||||||+|+++++.++|+.. +++++||||||+||||++.+..+...+
T Consensus 491 ~~~~~l~~a~VI~~T~~~~~~~-~L~~-~fd~viIDEA~q~~e~~~li~l~~-~~~~lilvGD~~QL~pvv~s~~a~~~g 567 (802)
T 2xzl_A 491 TEAEILNKADVVCCTCVGAGDK-RLDT-KFRTVLIDESTQASEPECLIPIVK-GAKQVILVGDHQQLGPVILERKAADAG 567 (802)
T ss_dssp HHHHHHHTCSEEEEETTGGGCT-TCCS-CCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCCCHHHHHTT
T ss_pred HHHHHhccCCEEEechhhcChH-HHhc-cCCEEEEECccccchHHHHHHHHh-CCCEEEEEeCccccCCeechhhhhhcC
Confidence 4567899999999999987642 2333 899999999999999999999875 579999999999999999887777788
Q ss_pred cccCHHHHHHhcCCCccccccccCCchhhhhcchhhhcCCCCccCcccccccccc--ccCCCCCCCCeEEEEeCCCeeee
Q 038017 334 FGRSLFERLSYLGHSKHLLSMQYRMHPSISFFPNSYFYENKILDAPTVRKRSYEK--QFLPGPMYGPYAFINVFGGREEF 411 (610)
Q Consensus 334 l~~SLFeRL~~~g~~~~~L~~QYRmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~--~~~~~~~~~p~~fidv~~g~e~~ 411 (610)
++.|+|+|+...|.+.++|++||||||+|++|+|..||+|+|.+++.+..+.... ..++.+ ..|+.|+++ .|.++.
T Consensus 568 l~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~-~~p~~f~~~-~g~~~~ 645 (802)
T 2xzl_A 568 LKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIR-GIPMMFWAN-YGREEI 645 (802)
T ss_dssp TTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSST-TCCEEEEEC-CCCCEE
T ss_pred CchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCC-CCCEEEEEc-CCceee
Confidence 9999999999999888999999999999999999999999999887765443221 111221 358999998 565544
Q ss_pred --cCCccCCHHHHHHHHHHHHH--------ccccCCCcccccccEEEeeccccc-----cCCCCCccccccccccccccc
Q 038017 412 --IEHSCRNMVEVSVVMKILLN--------LNLEVPKTWAVTSNIVRFKNLADN-----ESGSDLSGAAFDCRSYVENSN 476 (610)
Q Consensus 412 --~~~S~~N~~EA~~V~~lv~~--------~~i~v~tpy~~qv~iI~~~~~~~~-----~~~~~~~v~tvD~~qg~e~s~ 476 (610)
.+.|+.|..||+.|+++++. ..|+|++||++|+..|+-. +... .....+.+.|||+|||.|.
T Consensus 646 ~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~-L~~~~~l~~~~~~~v~V~TVd~fQG~E~-- 722 (802)
T 2xzl_A 646 SANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQY-MQMNGSLDKDLYIKVEVASVDAFQGREK-- 722 (802)
T ss_dssp CTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-HHHHCSSCHHHHHTSEEEEHHHHTTCCE--
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHH-HHHccccccccccceEEcchhhcCCCcc--
Confidence 68899999999999999986 3577788888887766521 1111 0113567899999999994
Q ss_pred ccchhhhhhcccCcchhhhccccccCCCccccceeeChhhceEEEcCC
Q 038017 477 VTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILFPR 524 (610)
Q Consensus 477 v~es~vl~~f~sls~~~~~~Ll~d~~g~e~dlnfavTr~e~~vI~~~~ 524 (610)
+.++++.+++...+-.+++ .+.+ ++||++|||++.++++++
T Consensus 723 --dvVIlS~vrs~~~~~~gfl-~d~r----rLNVAlTRAk~~LiIvg~ 763 (802)
T 2xzl_A 723 --DYIILSCVRANEQQAIGFL-RDPR----RLNVGLTRAKYGLVILGN 763 (802)
T ss_dssp --EEEEEECCCCCTTCCCGGG-GCHH----HHHHHHSSEEEEEEEEEC
T ss_pred --CEEEEEeccCCCCCCcccc-cCcc----ceeeeHhhhhCeEEEEEC
Confidence 4445555665554444544 4443 499999999999877754
No 5
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.39 E-value=1.4e-07 Score=102.08 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCH-HHHHHhcCCCccccccccCCch
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSL-FERLSYLGHSKHLLSMQYRMHP 360 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SL-FeRL~~~g~~~~~L~~QYRmhp 360 (610)
.+|+||||||+++........+...+++++|++||++||||+...+ ++.... |.++. ......++++|||.+
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~-----~~~~~~~~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVT-----GFPYPAHFAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCST-----TCCCCHHHHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCC-----Cccchhhhhhcc--cCcEEEeeeEeCCCH
Confidence 4899999999999865543222233569999999999999986443 122111 22221 124456899999999
Q ss_pred hhhhcchhhhcCCCCc
Q 038017 361 SISFFPNSYFYENKIL 376 (610)
Q Consensus 361 ~I~~f~s~~FY~~~L~ 376 (610)
+++.|.|.. |++++.
T Consensus 307 dv~~lLs~l-Y~~~V~ 321 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVM 321 (446)
T ss_dssp HHHHHHHTT-SSSCCE
T ss_pred HHHHHHHhh-cCCceE
Confidence 999999975 877665
No 6
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.26 E-value=3.2e-07 Score=103.87 Aligned_cols=88 Identities=27% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCcCcceEEEeCCCCcCCccccccc----c--cccccccCHHHHHHhcC------
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLPCIQHAILVGDECQLPAMVESSV----S--GEAYFGRSLFERLSYLG------ 346 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~~~k~~ILvGD~~QLpP~v~s~~----~--~~~~l~~SLFeRL~~~g------ 346 (610)
..+|+||||||+++.... .++... +...++||+||+.||||+..... . ...++..++++++....
T Consensus 261 l~~d~lIIDEAsml~~~~~~~Ll~~l-~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 261 LHLDVLVVDEASMIDLPMMSRLIDAL-PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTC-CTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCEEEEechhhCCHHHHHHHHHhC-CCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccc
Confidence 368999999999998753 344432 34589999999999999865331 1 23568888999887642
Q ss_pred -----CC-----ccccccccCCchh--hhhcchhh
Q 038017 347 -----HS-----KHLLSMQYRMHPS--ISFFPNSY 369 (610)
Q Consensus 347 -----~~-----~~~L~~QYRmhp~--I~~f~s~~ 369 (610)
.+ .+.|+++||++++ |..+.+..
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i 374 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH
T ss_pred ccccccccccccEEecceeeeeCCcchHHHHHHHH
Confidence 12 5899999999876 88887643
No 7
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.02 E-value=2.4e-06 Score=96.00 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=61.9
Q ss_pred CCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCCc
Q 038017 282 QLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRMH 359 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRmh 359 (610)
.+|+||||||+++..... ++... +...++|+|||+.||||+.. .+.|..++. +.+.+.|+++||++
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~-~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~~ 346 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAV-PPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQA 346 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTS-CTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhC-cCCCEEEEEecccccCCccC----------CcHHHHHHh-cCCEEEcceeEeCC
Confidence 689999999999987642 23322 24579999999999999753 246777777 78999999999998
Q ss_pred --hhhhhcchhhhcCCCC
Q 038017 360 --PSISFFPNSYFYENKI 375 (610)
Q Consensus 360 --p~I~~f~s~~FY~~~L 375 (610)
+.|..+.+.. ..|.+
T Consensus 347 ~~s~I~~~a~~i-~~g~~ 363 (574)
T 3e1s_A 347 AKNPIIQAAHGL-LHGEA 363 (574)
T ss_dssp HTCHHHHHHHHH-HTTCC
T ss_pred CccHHHHHHHHH-hCCCC
Confidence 6699987754 54544
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.96 E-value=8.9e-06 Score=92.00 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCccccccccC
Q 038017 282 QLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQYR 357 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QYR 357 (610)
.|++|+|||+..++..+. +-.|.. ..+++++|||++|-- ....|-....|.++... +...+.|+.+||
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~-~~~~l~~vGD~~QsI-------y~frga~~~~~~~~~~~~~~~~~~~L~~nyR 284 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAG-DTGKVMIVGDDDQSI-------YGWRGAQVENIQRFLNDFPGAETIRLEQNYR 284 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHT-TTCEEEEEECGGGCC-------CGGGTCCTTHHHHHHHHCTTCEEEEECBCSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhc-CCCEEEEEcCchhhh-------ccccCCCHHHHHHHHHhCCCCeEEEcccCCC
Confidence 589999999988887653 333332 357899999999932 12223455667776654 356789999999
Q ss_pred CchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCCCeeeecCCccCCHHHHHHHHHHHHHc
Q 038017 358 MHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432 (610)
Q Consensus 358 mhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~g~e~~~~~S~~N~~EA~~V~~lv~~~ 432 (610)
|+|.|.++.|..|+.+.-..+.... ...+...++.++... ....||+.|++.+..+
T Consensus 285 s~~~I~~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----------~~~~e~~~ia~~I~~l 340 (647)
T 3lfu_A 285 STSNILSAANALIENNNGRLGKKLW--------TDGADGEPISLYCAF-----------NELDEARFVVNRIKTW 340 (647)
T ss_dssp SCHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCCccc--------cCCCCCCceEEEecC-----------ChHHHHHHHHHHHHHH
Confidence 9999999999999875433221111 001101245554441 2367899998888764
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.60 E-value=3.6e-05 Score=83.94 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCCcEEEEecCCCCChhH--HHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCC
Q 038017 281 EQLKFLVIDEAAQLKESE--SAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRM 358 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e--~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRm 358 (610)
..++++|||||+++.... .+.-+. ....+++++||+.||||+....... .+ ..++. ..+...+.|+.+||+
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~-~~~~~~~~vGD~~Ql~~v~~g~~~~--~l-~~~~~---~~~~~~~~L~~~~R~ 199 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTI-PPWCTIIGIGDNKQIRPVDPGENTA--YI-SPFFT---HKDFYQCELTEVKRS 199 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHS-CTTCEEEEEECTTSCCCCCTTSCSC--CC-CGGGT---CTTEEEEECCCCCCC
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhc-cCCCEEEEECCHHHcCCccCCcchH--hH-HHHHh---cCCCcEEeceeeeeC
Confidence 368999999999998543 222222 2457999999999999987543111 11 11111 134678999999999
Q ss_pred chhhhhcchhhhcC
Q 038017 359 HPSISFFPNSYFYE 372 (610)
Q Consensus 359 hp~I~~f~s~~FY~ 372 (610)
.+.|.++.+...-+
T Consensus 200 ~~~I~~~a~~lr~g 213 (459)
T 3upu_A 200 NAPIIDVATDVRNG 213 (459)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHcC
Confidence 99999999987543
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.87 E-value=0.0015 Score=74.45 Aligned_cols=85 Identities=20% Similarity=0.087 Sum_probs=61.5
Q ss_pred CCCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCcccccccc
Q 038017 281 EQLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQY 356 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QY 356 (610)
..|++|+|||+-.++.... +-.|.. ...++++|||++|-=- ...|-....|.++... +...+.|+.+|
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~-~~~~l~~vGD~~QsIy-------~frga~~~~~~~~~~~~~~~~~~~L~~ny 277 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVG-SRARFTVVGDDDQSIY-------SWRGARPQNLVLLSQDFPALKVIKLEQNY 277 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHT-TTCCEEEECCGGGCCC-------GGGTBCTTHHHHHHHHSTTCEEECCCCBS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhc-CCCeEEEEeCchhhhh-------hccCCCHHHHHHHHHhCCCCeEEECCCCC
Confidence 4799999999998887653 333432 2468999999998522 1123344566666553 35578999999
Q ss_pred CCchhhhhcchhhhcCC
Q 038017 357 RMHPSISFFPNSYFYEN 373 (610)
Q Consensus 357 Rmhp~I~~f~s~~FY~~ 373 (610)
|++|.|.++.|..|..+
T Consensus 278 Rs~~~I~~~an~~~~~~ 294 (673)
T 1uaa_A 278 RSSGRILKAANILIANN 294 (673)
T ss_dssp SSCHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHhc
Confidence 99999999999998754
No 11
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.37 E-value=0.0032 Score=72.42 Aligned_cols=125 Identities=16% Similarity=0.086 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCCCChhHH--HhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhc--CCCcccccccc
Q 038017 281 EQLKFLVIDEAAQLKESES--AIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYL--GHSKHLLSMQY 356 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~--lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~--g~~~~~L~~QY 356 (610)
..|++|+|||+-..+.... +-.|.. ...++.+|||+.|-=- ...|-....|.++... +...+.|..+|
T Consensus 215 ~rf~~IlVDEfQDtn~~Q~~ll~~L~~-~~~~l~vVGD~~QsIY-------~fRGA~~~~~~~f~~~~~~~~~i~L~~Ny 286 (724)
T 1pjr_A 215 YKFQYIHIDEYQDTNRAQYTLVKKLAE-RFQNICAVGDADQSIY-------RWRGADIQNILSFERDYPNAKVILLEQNY 286 (724)
T ss_dssp HHCSEEEESSGGGCCHHHHHHHHHHHT-TTCCEEEEECGGGCCC-------GGGTCCTHHHHTHHHHSTTCEEEEECBCS
T ss_pred hhCCEEEEEhHhcCCHHHHHHHHHHHc-CCCeEEEEECchhhcc-------cccCCCHHHHHHHHHHCCCCcEEECCCCC
Confidence 3689999999998887653 333332 2368999999998521 1112233344444332 34578999999
Q ss_pred CCchhhhhcchhhhcCCCCccCccccccccccccCCCCCCCCeEEEEeCCCeeeecCCccCCHHHHHHHHHHHHHc
Q 038017 357 RMHPSISFFPNSYFYENKILDAPTVRKRSYEKQFLPGPMYGPYAFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 432 (610)
Q Consensus 357 Rmhp~I~~f~s~~FY~~~L~~~~~v~~~~~~~~~~~~~~~~p~~fidv~~g~e~~~~~S~~N~~EA~~V~~lv~~~ 432 (610)
|+++.|.++.|..|.++.-...... +...+...++.++... ....||+.|++.++.+
T Consensus 287 RSt~~Il~~an~li~~n~~~~~k~l--------~~~~~~g~~i~~~~~~-----------~~~~Ea~~va~~I~~l 343 (724)
T 1pjr_A 287 RSTKRILQAANEVIEHNVNRKPKRI--------WTENPEGKPILYYEAM-----------NEADEAQFVAGRIREA 343 (724)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCCCCC--------BCSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCccccCccc--------ccccCCCCceEEEecC-----------CHHHHHHHHHHHHHHH
Confidence 9999999999999876542211110 1111111245544431 1367899888888764
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.89 E-value=0.05 Score=66.26 Aligned_cols=85 Identities=20% Similarity=0.067 Sum_probs=58.5
Q ss_pred CCcEEEEecCCCCChhHHHh-hccCcC---cceEEEeCCCCcCCcccccccccccccccCHHHHHHhcC-------CCcc
Q 038017 282 QLKFLVIDEAAQLKESESAI-PLQLPC---IQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLG-------HSKH 350 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~li-pL~~~~---~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g-------~~~~ 350 (610)
.|+.|+|||+--.+....-+ -..... ...+.+|||++|=-- .-.|-...+|....... ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~QsIY-------~FRgAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIY-------RFRLAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGCCC-------TTTTCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHHhH-------hccCCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 68999999999998765322 222222 368999999999421 11123445565554321 2568
Q ss_pred ccccccCCchhhhhcchhhhcCC
Q 038017 351 LLSMQYRMHPSISFFPNSYFYEN 373 (610)
Q Consensus 351 ~L~~QYRmhp~I~~f~s~~FY~~ 373 (610)
.|+++||++|.|.++.|..|-..
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~~ 495 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQL 495 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHTT
T ss_pred ECCCCCCCChHHHHHHHHHHhhc
Confidence 99999999999999999998643
No 13
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.26 E-value=0.079 Score=59.47 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=46.3
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEE
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~ 590 (610)
++++|+++|.. .+.++|+|.+|||||++++.|.... ..+ .+..+ -+-+
T Consensus 10 Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ri~~l------~~~------~~~~~-------------------~~iL 58 (647)
T 3lfu_A 10 LNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWL------MSV------ENCSP-------------------YSIM 58 (647)
T ss_dssp CCHHHHHHHTCCSSCEEEEECTTSCHHHHHHHHHHHH------HHT------SCCCG-------------------GGEE
T ss_pred CCHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHHHH------HHh------CCCCh-------------------hhEE
Confidence 67788877765 4678999999999999999887531 110 00000 1237
Q ss_pred EEecCHHHHHHHHHHhhh
Q 038017 591 FVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 591 fvt~s~~L~~~vk~~~~~ 608 (610)
++|.+...+.++++.+.+
T Consensus 59 ~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 59 AVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHH
Confidence 889999999998887754
No 14
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=91.57 E-value=0.099 Score=63.38 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCCChhH--HHhhccC-cCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCccccccccCC
Q 038017 282 QLKFLVIDEAAQLKESE--SAIPLQL-PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSKHLLSMQYRM 358 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e--~lipL~~-~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~~~L~~QYRm 358 (610)
.|+.|+|||+--..... .+-.|.. .....+.+|||++|==--. .|-+...|.++.......+.|.++||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY~F-------RGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF-------RGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGG-------GTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccccC-------cCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 68999999999988754 3333432 1235899999999842110 011111233333333467899999999
Q ss_pred chhhhhcchhhhcC
Q 038017 359 HPSISFFPNSYFYE 372 (610)
Q Consensus 359 hp~I~~f~s~~FY~ 372 (610)
+|.|.++.|..|-.
T Consensus 450 ~~~Il~~~N~lf~~ 463 (1180)
T 1w36_B 450 APGMVNSVNKLFSQ 463 (1180)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999998754
No 15
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.15 E-value=0.53 Score=45.06 Aligned_cols=72 Identities=21% Similarity=0.154 Sum_probs=45.6
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..-. .+.... .+....+
T Consensus 43 ~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~-----~~~~~~---------------------~~~~~~~ 96 (228)
T 3iuy_A 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLD-----SQPISR---------------------EQRNGPG 96 (228)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----------------------------------CCCS
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH-----hccchh---------------------hccCCCc
Confidence 4444544432 2667899999999999998877664211 000000 0001145
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-||++....||.|+.+.+.++
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHh
Confidence 699999999999999887654
No 16
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.72 E-value=0.29 Score=55.43 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=28.7
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHH
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+|++|+++|.. ..+++|+|..|||||++++.|..
T Consensus 3 L~~~Q~~av~~~~~~~lV~AgaGSGKT~~l~~ri~ 37 (673)
T 1uaa_A 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIA 37 (673)
T ss_dssp CCHHHHHHHHCCSSEEEECCCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCEEEEeCCCCChHHHHHHHHH
Confidence 67888887776 45788999999999999998875
No 17
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=86.66 E-value=0.39 Score=55.00 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=45.7
Q ss_pred eChhhceEEEc-CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEE
Q 038017 512 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590 (610)
Q Consensus 512 vTr~e~~vI~~-~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~ 590 (610)
++++|++.|.. ..+++|+|..|||||++++.|+... +...+. .+ =+=+
T Consensus 12 Ln~~Q~~av~~~~g~~lV~AgAGSGKT~vL~~ri~~l-----l~~~~~-------~p-------------------~~IL 60 (724)
T 1pjr_A 12 LNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYL-----MAEKHV-------AP-------------------WNIL 60 (724)
T ss_dssp SCHHHHHHHHCCSSCEEEEECTTSCHHHHHHHHHHHH-----HHTTCC-------CG-------------------GGEE
T ss_pred CCHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHHHH-----HHhcCC-------CH-------------------HHeE
Confidence 67888887766 4578999999999999999887421 110011 00 1127
Q ss_pred EEecCHHHHHHHHHHhhh
Q 038017 591 FVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 591 fvt~s~~L~~~vk~~~~~ 608 (610)
.||.+.+.+.++++.+.+
T Consensus 61 ~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 61 AITFTNKAAREMRERVQS 78 (724)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHH
Confidence 788899888888887654
No 18
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.08 E-value=0.75 Score=46.61 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=40.6
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
+++++.+++|+|||.++++-++..- .. . ....+.|+++...-||.|+.
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l----------~~--~--------------------~~~~~~lil~PtreLa~Q~~ 179 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQV----------EP--A--------------------NKYPQCLCLSPTYELALQTG 179 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC----------CT--T--------------------SCSCCEEEECSSHHHHHHHH
T ss_pred CeEEEECCCCCCccHHHHHHHHHhh----------hc--c--------------------CCCceEEEEcCcHHHHHHHH
Confidence 6789999999999999888777531 00 0 00146799999999999998
Q ss_pred HHhhhc
Q 038017 604 QHISHM 609 (610)
Q Consensus 604 ~~~~~l 609 (610)
+.+.++
T Consensus 180 ~~~~~l 185 (300)
T 3fmo_B 180 KVIEQM 185 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 19
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.36 E-value=1.1 Score=44.39 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=45.6
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
+++-|.+++- -++++++.+++|+|||.++++-++..-... .... ..-.+
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~-----~~~~-----------------------~~~~~ 128 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL-----RFMP-----------------------RNGTG 128 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHT-----TCCG-----------------------GGCCC
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhc-----cccc-----------------------cCCce
Confidence 4454544432 266789999999999999888877532210 0000 00144
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+|+....|+.|+.+.+.+
T Consensus 129 ~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 69999999999999887765
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.21 E-value=1.1 Score=41.92 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.++.|+|||.+.++-++.... . . ....+.|+++....|+.++
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~~~~~~----------~--~--------------------~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPLLERLD----------L--K--------------------KDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHHHHHCC----------T--T--------------------SCSCCEEEECSCHHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHHHHHHHhc----------c--c--------------------CCCeeEEEEeCcHHHHHHH
Confidence 567899999999999988877664311 0 0 0014679999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 88 ~~~~~~ 93 (206)
T 1vec_A 88 SQICIQ 93 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.05 E-value=1.4 Score=42.34 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=44.7
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|...+- -++++++.++.|+|||.+.++-++..- +.. ... .....+
T Consensus 48 ~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l--~~~---~~~-----------------------~~~~~~ 99 (236)
T 2pl3_A 48 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL--YRL---QWT-----------------------STDGLG 99 (236)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH--HHT---TCC-----------------------GGGCCC
T ss_pred CCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHH--Hhh---ccc-----------------------ccCCce
Confidence 3444444332 266789999999999998877665421 100 000 001146
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....||.++.+.+.+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~ 119 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRK 119 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 69999999999999887755
No 22
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.65 E-value=1.1 Score=43.37 Aligned_cols=70 Identities=16% Similarity=0.056 Sum_probs=45.9
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..-. ...... +..-.+
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~-----~~~~~~----------------------~~~~~~ 104 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN-----HQPFLE----------------------RGDGPI 104 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHH-----TSCCCC----------------------TTCCCS
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHH-----hccccc----------------------cCCCCE
Confidence 4555555432 3678999999999999998877764311 000000 001145
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....|+.|+.+.+.+
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHH
Confidence 69999999999999877654
No 23
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=82.14 E-value=0.96 Score=55.05 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=49.9
Q ss_pred ceeeChhhceEEEcC-CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccce
Q 038017 509 PFEVTDEQLEMILFP-RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYIL 587 (610)
Q Consensus 509 nfavTr~e~~vI~~~-~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 587 (610)
++.+|++|+++|... ++++|.|..|||||++++.|+... +. .+..+.. .=
T Consensus 8 ~~~~t~eQ~~~i~~~~~~~~v~a~AGSGKT~vl~~ri~~l--l~-----------~~~~~~~----------------~~ 58 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRK--IT-----------AEENPID----------------VD 58 (1232)
T ss_dssp --CCCHHHHHHHHCCSSCEEEEECTTCCHHHHHHHHHHHH--HS-----------CSSSCCC----------------GG
T ss_pred CCCCCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHH--Hh-----------cCCCCCC----------------cc
Confidence 466899999988775 488999999999999999888642 11 0000000 01
Q ss_pred eEEEEecCHHHHHHHHHHhhh
Q 038017 588 HQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 588 ~q~fvt~s~~L~~~vk~~~~~ 608 (610)
+-+.||.+...+.++++.+.+
T Consensus 59 ~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 59 RLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp GEEEECSSHHHHHHHHHHHHH
T ss_pred ceEEEeccHHHHHHHHHHHHH
Confidence 238899999999999988754
No 24
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.92 E-value=1.3 Score=42.05 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.++.|+|||.+.++-++..-. .. . ...+-|+++.+..|+.++
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l~----------~~---~-------------------~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRID----------TS---V-------------------KAPQALMLAPTRELALQI 98 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCC----------TT---C-------------------CSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHh----------cc---C-------------------CCceEEEEECCHHHHHHH
Confidence 567899999999999987777664310 00 0 014569999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 99 ~~~~~~ 104 (224)
T 1qde_A 99 QKVVMA 104 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 25
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.66 E-value=1.9 Score=41.60 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=45.9
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..-. .. . ..-.+
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~----------~~-~--------------------~~~~~ 100 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK----------QP-A--------------------NKGFR 100 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------SC-C--------------------SSSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHh----------hc-c--------------------cCCce
Confidence 4555554432 2667899999999999998877764311 00 0 00146
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-|||+....|+.|+.+.+.++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHH
Confidence 699999999999998887653
No 26
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.63 E-value=1.6 Score=40.71 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.++.|+|||.+.+.-++..-. .. .. .....+-++++.+..|+.++
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l~----------~~-~~------------------~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERLA----------PS-QE------------------RGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCC----------CC-CC------------------TTCCCSEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHh----------hc-cc------------------cCCCCcEEEEECCHHHHHHH
Confidence 567889999999999988777664311 00 00 00115669999999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+.++
T Consensus 89 ~~~~~~~ 95 (207)
T 2gxq_A 89 ASELTAV 95 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 27
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.64 E-value=1.9 Score=42.10 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=44.1
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.+.-++..-.. . . ...+
T Consensus 66 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~----------~-~---------------------~~~~ 113 (249)
T 3ber_A 66 PTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE----------T-P---------------------QRLF 113 (249)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH----------S-C---------------------CSSC
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc----------C-C---------------------CCce
Confidence 4444444332 25678999999999999888776643110 0 0 0145
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....|+.++.+.+.+
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 69999999999999887754
No 28
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.26 E-value=3.2 Score=39.96 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.2
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++.+++.|++|+||||.+..-++...... +. ....+-+|+.....|+.++
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~------------~~------------------~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQN------------DR------------------AAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHT------------TC------------------GGGCEEEEEESSHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhc------------CC------------------CCceEEEEeccchHHHHHH
Confidence 66789999999999997665554321110 00 0114558888999999999
Q ss_pred HHHhh
Q 038017 603 KQHIS 607 (610)
Q Consensus 603 k~~~~ 607 (610)
.+.+.
T Consensus 126 ~~~~~ 130 (235)
T 3llm_A 126 AERVA 130 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=79.20 E-value=2.5 Score=40.94 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..-. .+... .+. .......+
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~-----~~~~~---~~~---------------~~~~~~~~ 102 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV-----CQDLN---QQR---------------YSKTAYPK 102 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH-----TTCC------------------------CCBCCS
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH-----hhccc---ccc---------------ccccCCce
Confidence 4555554433 2567899999999999998877764311 10000 000 00111256
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+|+....||.|+.+.+.+
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQK 122 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 79999999999999887654
No 30
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.18 E-value=2 Score=41.15 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -+.++++.++.|+|||.+.++-++..-. . . + ...+
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~-----~-----~-~---------------------~~~~ 94 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLV-----L-----E-N---------------------LSTQ 94 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC-----T-----T-S---------------------CSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHH-----h-----c-C---------------------CCce
Confidence 4444444332 2567899999999999988777654311 0 0 0 0135
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-|+|+....|+.|+.+.+.++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHH
Confidence 699999999999998877653
No 31
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=77.45 E-value=2.2 Score=40.28 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=44.5
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.+. -+.++++.++.|+|||.+.++-++... ... . ...+
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~----------~~~-~---------------------~~~~ 84 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL----------EPV-T---------------------GQVS 84 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHC----------CCC-T---------------------TCCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhh----------hcc-C---------------------CCEE
Confidence 4455544333 256789999999999998887766421 000 0 0145
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-|+|+.+..|+.|+.+.+.++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHH
Confidence 699999999999998776543
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.44 E-value=1 Score=47.22 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=45.4
Q ss_pred ceeeChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 509 PFEVTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 509 nfavTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
++..++-|...|- -++++++.++.|+|||.+.+.-++... . . |
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~----------~---~----------------~----- 64 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------R---K----------------G----- 64 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH----------T---T----------------T-----
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh----------c---C----------------C-----
Confidence 3445666655443 256789999999999996665543311 0 0 0
Q ss_pred ceeEEEEecCHHHHHHHHHHhhhc
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~l 609 (610)
.+-|+++....||.|+.+.+.++
T Consensus 65 -~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 65 -KKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp -CCEEEEESSHHHHHHHHHHHHHH
T ss_pred -CEEEEEECCHHHHHHHHHHHHHH
Confidence 35699999999999999887653
No 33
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.12 E-value=1.8 Score=41.09 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=43.9
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..-. .. . .-.+
T Consensus 27 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~----------~~-~---------------------~~~~ 74 (219)
T 1q0u_A 27 PTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK----------PE-R---------------------AEVQ 74 (219)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC----------TT-S---------------------CSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH----------hC-c---------------------CCce
Confidence 3444444432 2567899999999999988777764311 00 0 0145
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....|+.|+.+.+.+
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLK 94 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHH
Confidence 69999999999999887654
No 34
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.33 E-value=1.6 Score=42.06 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-. .. . ...+-|+|+....|+.++
T Consensus 67 ~~~~li~apTGsGKT~~~~l~~l~~l~----------~~-~---------------------~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAISILQQLE----------IE-F---------------------KETQALVLAPTRELAQQI 114 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHHHHHHHCC----------TT-S---------------------CSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHH----------hc-C---------------------CCceEEEEECcHHHHHHH
Confidence 567899999999999987776664310 00 0 013569999999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+.++
T Consensus 115 ~~~~~~~ 121 (237)
T 3bor_A 115 QKVILAL 121 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877543
No 35
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.35 E-value=3.5 Score=43.68 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=46.3
Q ss_pred eChhhceEE---EcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMI---LFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI---~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.|+-|+..| .-++++++.+++|+|||.++++-++..-... ... ......+
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~-----~~~----------------------~~~~~~~ 131 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED-----PHE----------------------LELGRPQ 131 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS-----CCC----------------------CCTTCCS
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc-----ccc----------------------cccCCcc
Confidence 344444433 2367899999999999999888777542110 000 0011156
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....||.|+.+.+.+
T Consensus 132 ~lil~PtreLa~Q~~~~~~~ 151 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARK 151 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHH
Confidence 79999999999999887765
No 36
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=72.23 E-value=3.3 Score=42.72 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=39.3
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
.++++.++.|+|||.++++-++..-. .+. ...+-++|+....||.++.
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~-------------~~~-------------------~~~~~lil~P~~~L~~q~~ 112 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVE-------------PAN-------------------KYPQCLCLSPTYELALQTG 112 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCC-------------TTS-------------------CSCCEEEECSSHHHHHHHH
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhh-------------hcC-------------------CCCCEEEECCCHHHHHHHH
Confidence 67899999999999998877764210 000 0135699999999999998
Q ss_pred HHhhhc
Q 038017 604 QHISHM 609 (610)
Q Consensus 604 ~~~~~l 609 (610)
+.+.++
T Consensus 113 ~~~~~~ 118 (412)
T 3fht_A 113 KVIEQM 118 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.11 E-value=4.3 Score=41.84 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=45.0
Q ss_pred eChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
+++-|.+.+-. ++++++.++.|+|||.+.++-++..-. ... .-.+
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~-------------~~~-------------------~~~~ 91 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK-------------PKL-------------------NKIQ 91 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCC-------------TTS-------------------CSCC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHh-------------hcc-------------------CCcc
Confidence 55555554432 567899999999999988877764310 000 0145
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+|+.+..|+.++.+.+.+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~ 111 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRT 111 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHH
Confidence 69999999999999887754
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=71.65 E-value=3.1 Score=49.45 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=49.5
Q ss_pred ccceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcc
Q 038017 507 DLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTE 583 (610)
Q Consensus 507 dlnfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (610)
.++|.+++-|.++|-. ++++++.++.|+|||++..+-+..... . |
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-------------~----------------g--- 82 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-------------N----------------M--- 82 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-------------T----------------T---
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-------------c----------------C---
Confidence 3788899998887654 778999999999999987766543210 0 0
Q ss_pred ccceeEEEEecCHHHHHHHHHHhhh
Q 038017 584 RYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 584 ~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-++++..-.|+.++.+.+.+
T Consensus 83 ---~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 83 ---TKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp ---CEEEEEESCGGGHHHHHHHHHT
T ss_pred ---CeEEEEeCCHHHHHHHHHHHHH
Confidence 3458888888888888777654
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=71.40 E-value=3.7 Score=44.88 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=46.5
Q ss_pred eChhhceEEE-----cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 512 VTDEQLEMIL-----FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 512 vTr~e~~vI~-----~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+++-|.++|- -++++++.++.|+|||.+.++-++..-... +.. ....
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~-----~~~-----------------------~~~~ 146 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT-----KFD-----------------------SQYM 146 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHT-----TTS-----------------------STTS
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhc-----ccc-----------------------ccCC
Confidence 4555555442 145788899999999999888877542211 000 0112
Q ss_pred eeEEEEecCHHHHHHHHHHhhh
Q 038017 587 LHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-|+|+....||.|+.+.+.+
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHH
Confidence 5679999999999999888765
No 40
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=71.11 E-value=4.7 Score=41.11 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=39.1
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
+++++.++.|+|||.+.++-++..-. .. . ...+-|+|+.+..|+.++.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~----------~~---~-------------------~~~~~lil~P~~~L~~q~~ 92 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVN----------PE---D-------------------ASPQAICLAPSRELARQTL 92 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCC----------TT---C-------------------CSCCEEEECSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhc----------cC---C-------------------CCccEEEECCCHHHHHHHH
Confidence 67889999999999988887764310 00 0 0135599999999999998
Q ss_pred HHhhh
Q 038017 604 QHISH 608 (610)
Q Consensus 604 ~~~~~ 608 (610)
+.+.+
T Consensus 93 ~~~~~ 97 (395)
T 3pey_A 93 EVVQE 97 (395)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 41
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.91 E-value=2.2 Score=39.71 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 254 LKDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
....+...++|+++|+...... .......+++||||||-.+.
T Consensus 113 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 113 QKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 3455667899999998764432 12334568999999997653
No 42
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=70.72 E-value=6.8 Score=40.45 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=47.5
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.|+-|..+|- -++++++.++.|+|||.+.++-++..-... ...+..... .+.+.. ..+....+
T Consensus 38 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-~~~~~~~~~-----------~~~~~~--~~~~~~~~ 103 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSD-GPGEALRAM-----------KENGRY--GRRKQYPI 103 (417)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHH-CCCHHHHHH-----------HHCBTT--BSCSBCCS
T ss_pred CCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhc-cccchhhcc-----------cccccc--ccccCCcc
Confidence 4555544432 267889999999999998888776532110 000000000 000000 01112256
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+++....||.|+.+.+.+
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~ 123 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARK 123 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHH
Confidence 79999999999999887754
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=70.63 E-value=2.9 Score=38.90 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=44.2
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+.+++-|.+.+.. +.+.++.++.|+|||.++++-++..... .... ...
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~-----------------------~~~ 82 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDK------KKKA-----------------------SEP 82 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHH------HHHT-----------------------TCC
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhh------cccc-----------------------cCC
Confidence 4455555554432 5678999999999999887766532110 0000 001
Q ss_pred eeEEEEecCHHHHHH-HHHHhhh
Q 038017 587 LHQLFVTVSPKLCFA-VKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~-vk~~~~~ 608 (610)
.+-|+|+.+..|+.+ +++.+.+
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHH
T ss_pred CcEEEEECHHHHHHHHHHHHHHH
Confidence 356899999999998 7665543
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=70.08 E-value=1.4 Score=40.48 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..++++|++||||||.+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445788999999999854
No 45
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.85 E-value=4 Score=40.69 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=37.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+++.++.++.|+|||.+.+.-++.. + .+-++|+....|+.++
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~------------~--------------------------~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILEL------------G--------------------------MKSLVVTPTRELTRQV 72 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH------------T--------------------------CCEEEECSSHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhh------------c--------------------------CCEEEEeCCHHHHHHH
Confidence 4578999999999999877666531 0 3448999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 73 ~~~~~~ 78 (337)
T 2z0m_A 73 ASHIRD 78 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 46
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=69.83 E-value=4.1 Score=44.90 Aligned_cols=69 Identities=20% Similarity=0.368 Sum_probs=46.6
Q ss_pred eChhhceEEE-----cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 512 VTDEQLEMIL-----FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 512 vTr~e~~vI~-----~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+++-|.++|- -+.++++.++.|+|||.++++-++..-.. .... ....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~-----~~~~-----------------------~~~~ 95 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN-----TKFD-----------------------SQYM 95 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHH-----TTTS-----------------------STTS
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHh-----cccc-----------------------ccCC
Confidence 5565655542 14568889999999999988877653221 0000 0112
Q ss_pred eeEEEEecCHHHHHHHHHHhhh
Q 038017 587 LHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-|+|+....||.|+.+.+.+
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHH
Confidence 5679999999999999888765
No 47
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.63 E-value=6.3 Score=39.64 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=43.7
Q ss_pred eChhhceEEEc---C-CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccce
Q 038017 512 VTDEQLEMILF---P-RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYIL 587 (610)
Q Consensus 512 vTr~e~~vI~~---~-~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 587 (610)
.++-|++.|.. + .++++.++.|+|||.+.+.-++..-. . + ...
T Consensus 29 ~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~----------~--~---------------------~~~ 75 (367)
T 1hv8_A 29 PTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----------E--N---------------------NGI 75 (367)
T ss_dssp CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----------S--S---------------------SSC
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc----------c--c---------------------CCC
Confidence 45555554432 3 47888899999999988776654210 0 0 014
Q ss_pred eEEEEecCHHHHHHHHHHhhh
Q 038017 588 HQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 588 ~q~fvt~s~~L~~~vk~~~~~ 608 (610)
+-++|+.+..|+.++.+.+.+
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCHHHHHHHHHHHHH
Confidence 559999999999999888765
No 48
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=68.58 E-value=5.3 Score=36.89 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.8
Q ss_pred ccccCCchhhhhcchhhhcCC
Q 038017 353 SMQYRMHPSISFFPNSYFYEN 373 (610)
Q Consensus 353 ~~QYRmhp~I~~f~s~~FY~~ 373 (610)
+++||+.+.|.+|.|..+.++
T Consensus 2 ~~NYRSt~~Il~~An~li~~~ 22 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNG 22 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC-
T ss_pred CCCCCChHHHHHHHHHHhcCC
Confidence 478999999999999776643
No 49
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=67.53 E-value=4.6 Score=41.68 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=39.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-. .. . ...+-++|+....|+.++
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~~~~~~----------~~---~-------------------~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISILQQIE----------LD---L-------------------KATQALVLAPTRELAQQI 124 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHHHHHCC----------TT---S-------------------CSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHHHHHHHh----------hc---C-------------------CceeEEEEeChHHHHHHH
Confidence 567899999999999998877764311 00 0 003459999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 125 ~~~~~~ 130 (414)
T 3eiq_A 125 QKVVMA 130 (414)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 50
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=67.00 E-value=2.2 Score=39.63 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=15.6
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+.++|+||+||||. ++++.
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~ 22 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLF 22 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHH
Confidence 3467899999999994 44443
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=66.90 E-value=2.2 Score=38.50 Aligned_cols=17 Identities=35% Similarity=0.778 Sum_probs=14.2
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+++.|++|||||+.+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 45788999999999864
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=66.47 E-value=4.4 Score=43.50 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=39.7
Q ss_pred EEEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHH
Q 038017 519 MILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKL 598 (610)
Q Consensus 519 vI~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L 598 (610)
++.-++++++.++.|+|||++.+.-++..... . | .+-|+++....|
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------------~----------------~------~~~lvl~Ptr~L 62 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------------Q----------------R------LRTAVLAPTRVV 62 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------------T----------------T------CCEEEEECSHHH
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------------C----------------C------CcEEEECchHHH
Confidence 33346678899999999999988887753210 0 0 345889999999
Q ss_pred HHHHHHHhh
Q 038017 599 CFAVKQHIS 607 (610)
Q Consensus 599 ~~~vk~~~~ 607 (610)
|.|+.+.+.
T Consensus 63 a~Q~~~~l~ 71 (459)
T 2z83_A 63 AAEMAEALR 71 (459)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999887653
No 53
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.28 E-value=2.2 Score=40.19 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=15.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|+||+||||. ++++.
T Consensus 4 g~~i~lvGpsGaGKSTL--l~~L~ 25 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTL--LKKLF 25 (198)
T ss_dssp -CCEEEECCTTSSHHHH--HHHHH
T ss_pred CCEEEEECCCCCCHHHH--HHHHH
Confidence 34578999999999984 44443
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=66.13 E-value=4.2 Score=48.34 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=48.8
Q ss_pred ccceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcc
Q 038017 507 DLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTE 583 (610)
Q Consensus 507 dlnfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (610)
.++|.+++-|.+.|.. +.++++.++.|+|||.+..+-++.... . |
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-------------~----------------g--- 129 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------N----------------K--- 129 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------------T----------------T---
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------------c----------------C---
Confidence 3788899988876653 778999999999999988765543210 0 0
Q ss_pred ccceeEEEEecCHHHHHHHHHHhhh
Q 038017 584 RYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 584 ~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-+|++...-|++|+.+.+.+
T Consensus 130 ---~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 130 ---QRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp ---CEEEEEESSHHHHHHHHHHHHH
T ss_pred ---CeEEEECChHHHHHHHHHHHHH
Confidence 3458888888888888776643
No 55
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.74 E-value=5 Score=38.94 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=22.7
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHHHHH
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl 544 (610)
+.+++.|...+.. +...+++|+.|+|||..++.-+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHH
Confidence 4445555443321 3458899999999998876544
No 56
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=64.80 E-value=2.4 Score=39.10 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.7
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.-+.++|+||+||||.+
T Consensus 6 ~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999843
No 57
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=64.46 E-value=4.5 Score=43.21 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.4
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
+++++.|++|+|||.+.++-++..- . .+. ...+-|+++....||.|+.
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l----------~---~~~-------------------~~~~~lil~Pt~~La~Q~~ 179 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQV----------E---PAN-------------------KYPQCLCLSPTYELALQTG 179 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTC----------C---TTS-------------------CSCCEEEECSSHHHHHHHH
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHH----------h---hcC-------------------CCCcEEEEeChHHHHHHHH
Confidence 6789999999999999887776421 0 000 0135699999999999997
Q ss_pred HHhhh
Q 038017 604 QHISH 608 (610)
Q Consensus 604 ~~~~~ 608 (610)
+.+.+
T Consensus 180 ~~~~~ 184 (479)
T 3fmp_B 180 KVIEQ 184 (479)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 58
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=64.34 E-value=7.7 Score=39.60 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=44.3
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
+++-|.+.+- -+.++++.++.|+|||.+.+.-++..- ... . ...+
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l----------~~~-~---------------------~~~~ 78 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL----------EPV-T---------------------GQVS 78 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHC----------CCC-T---------------------TCCC
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhh----------ccc-C---------------------CCee
Confidence 4455544432 256789999999999998877765421 000 0 0145
Q ss_pred EEEEecCHHHHHHHHHHhhhc
Q 038017 589 QLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~l 609 (610)
-|+|+.+..|+.++.+.+.++
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHH
Confidence 699999999999998877653
No 59
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.26 E-value=8.2 Score=44.70 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=45.8
Q ss_pred CCcCCCcccChhhhhhcCcchhHHHHHHHHHhhhhhhcCCCceEEEEeeccCCCCceeEEEEecccccCCCCCCCCCccC
Q 038017 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKT 80 (610)
Q Consensus 1 v~~ip~~F~s~~~Y~~sf~~pL~eEt~~~l~Ssl~~~~~ap~~~i~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~y~p 80 (610)
++.||++|.|..+|.+.|.|.|.-|..+|.. +.......-..+.+... ..+..++.+.+.... ...+..
T Consensus 177 ~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~ 245 (802)
T 2xzl_A 177 IPPLLLRYQDAYEYQRSYGPLIKLEADYDKQ--LKESQALEHISVSWSLA--LNNRHLASFTLSTFE-------SNELKV 245 (802)
T ss_dssp -CCCCSSCSSHHHHHHHHHHHHHHHHHHHHH--HHCCC--CCBCEEEEEC--TTSCEEEEEC----------------CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhHhhccCceEeeecc--CCCeEEEEEEecccc-------cCCCCC
Confidence 4689999999999999998877777766653 11111111122333221 123334444443211 123677
Q ss_pred CCCCEEEeccCCCC
Q 038017 81 LPGDILVLADAKPE 94 (610)
Q Consensus 81 ~~gDii~lt~~kP~ 94 (610)
.+||++.|+...|.
T Consensus 246 ~~GD~v~l~~~~~~ 259 (802)
T 2xzl_A 246 AIGDEMILWYSGMQ 259 (802)
T ss_dssp CTTCEEEEEECSSS
T ss_pred CCCCEEEEEECCCC
Confidence 89999999976665
No 60
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.12 E-value=2.7 Score=37.31 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|.+|||||+.+
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 346889999999999743
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=64.02 E-value=4.5 Score=46.72 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=49.8
Q ss_pred cceeeChhhceEEEc---------CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF---------PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~---------~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
++|.+|+.|..+|.- +.+.++.|+.|+|||.++++-++..-. .+
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------~g--------------------- 417 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AG--------------------- 417 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HT---------------------
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------cC---------------------
Confidence 778999999886653 137899999999999999887765311 00
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-++++....|+.|+.+.+.+
T Consensus 418 --------~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 418 --------FQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp --------SCEEEECSCHHHHHHHHHHHHH
T ss_pred --------CeEEEEeCcHHHHHHHHHHHHH
Confidence 2348999999999998877654
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.99 E-value=2.5 Score=41.12 Aligned_cols=18 Identities=39% Similarity=0.829 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.+++++|++||||||.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456889999999999753
No 63
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=63.78 E-value=2.8 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|.+|||||+.+
T Consensus 24 ~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CSCEEEESSTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346899999999999754
No 64
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.70 E-value=2.3 Score=39.14 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=15.8
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
..++++|++|+||||. .|++.
T Consensus 10 ~~i~l~G~~GsGKSTl--~~~La 30 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI--AEALA 30 (191)
T ss_dssp EEEEEEECTTSCHHHH--HHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHH
Confidence 3467899999999994 45553
No 65
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.61 E-value=2.6 Score=39.26 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=14.4
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46789999999999854
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.56 E-value=4.7 Score=39.09 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCeEEEEcccccchhcccccCCCcEEEEecCCCCChh
Q 038017 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 261 ~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~ 297 (610)
.++|+++|..........-...+++||||||-.+...
T Consensus 171 ~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT
T ss_pred cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCCh
Confidence 5789999976644322211246999999999998754
No 67
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=63.34 E-value=2.8 Score=39.56 Aligned_cols=17 Identities=59% Similarity=0.864 Sum_probs=14.2
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
+.+++.|+||+||+|.+
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=63.17 E-value=3.1 Score=37.45 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..++++|++|+|||| +++.+..
T Consensus 36 g~~~~l~G~~G~GKTt--L~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSH--LLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHHH
Confidence 4467899999999998 3444443
No 69
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=63.15 E-value=4.3 Score=48.79 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=49.3
Q ss_pred cceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccc
Q 038017 508 LPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTER 584 (610)
Q Consensus 508 lnfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (610)
++|.+++-|...|-. +.++++.|+.|+|||.++.+-++.... + |
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------------~----------------g---- 227 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------N----------------K---- 227 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------------T----------------T----
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------------c----------------C----
Confidence 678888888776654 678999999999999988776654310 0 0
Q ss_pred cceeEEEEecCHHHHHHHHHHhhh
Q 038017 585 YILHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 585 ~~l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
-+-+|++....|+.|+.+.+.+
T Consensus 228 --~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 228 --QRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp --CEEEEEESSHHHHHHHHHHHHH
T ss_pred --CeEEEEcCcHHHHHHHHHHHHH
Confidence 2458888888899888877754
No 70
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=61.97 E-value=4.9 Score=48.31 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=48.2
Q ss_pred cceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccc
Q 038017 508 LPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTER 584 (610)
Q Consensus 508 lnfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (610)
++|..|+-|...|-. +.++++.+++|+|||.+.+.-++... . . |
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------~---~----------------~---- 121 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------R---K----------------G---- 121 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------T---T----------------T----
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------h---c----------------C----
Confidence 455677777765542 67899999999999996655443321 0 0 0
Q ss_pred cceeEEEEecCHHHHHHHHHHhhhc
Q 038017 585 YILHQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 585 ~~l~q~fvt~s~~L~~~vk~~~~~l 609 (610)
.+-|+++....||.|+.+.+.++
T Consensus 122 --~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 122 --KKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp --CCEEEEESSHHHHHHHHHHHHTT
T ss_pred --CeEEEEechHHHHHHHHHHHHHh
Confidence 45699999999999999988763
No 71
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.76 E-value=6.5 Score=40.64 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=44.3
Q ss_pred eChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.|- -++++++.++.|+|||.+.++-++..- ... . ...+
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l----------~~~---~-------------------~~~~ 107 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL----------DIQ---V-------------------RETQ 107 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTC----------CTT---S-------------------CSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHH----------hhc---c-------------------CCce
Confidence 4555544333 256789999999999999887776421 000 0 0035
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+|+....|+.++.+.+.+
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHH
Confidence 69999999999999887654
No 72
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.35 E-value=3.1 Score=38.66 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=15.0
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-+.++|++|+||||. ++++.
T Consensus 9 ii~l~Gp~GsGKSTl--~~~L~ 28 (205)
T 3tr0_A 9 LFIISAPSGAGKTSL--VRALV 28 (205)
T ss_dssp EEEEECCTTSCHHHH--HHHHH
T ss_pred EEEEECcCCCCHHHH--HHHHH
Confidence 466899999999984 44443
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.29 E-value=11 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 255 KDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
...+...++||++|+.....+ .......+++||||||=.+.
T Consensus 144 ~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 187 (253)
T 1wrb_A 144 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187 (253)
T ss_dssp HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHH
T ss_pred HHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHH
Confidence 345567889999998765432 11234568999999997654
No 74
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.18 E-value=3.1 Score=39.37 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.2
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-++++|+||+||||.+
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3678999999999853
No 75
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=61.16 E-value=3.1 Score=37.73 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|.||+||||..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999954
No 76
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.09 E-value=3 Score=40.32 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999744
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.69 E-value=3.3 Score=39.61 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| +++++.
T Consensus 23 G~~~~lvGpsGsGKST--Ll~~L~ 44 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGT--LIKKLL 44 (218)
T ss_dssp CCCEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4457789999999998 445543
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.54 E-value=3.2 Score=40.34 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..++++|++||||||.+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34789999999999843
No 79
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=60.45 E-value=3.1 Score=40.99 Aligned_cols=18 Identities=39% Similarity=0.791 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 446889999999999754
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=60.40 E-value=2.5 Score=38.11 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 44 ~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CEEEEESCGGGCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 35688999999999854
No 81
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=60.34 E-value=7 Score=41.94 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=39.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-... . . ....+-|+|+....||.++
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------~----~--------------------~~~~~~lil~P~~~L~~q~ 68 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHHLKKF------P----C--------------------GQKGKVVFFANQIPVYEQQ 68 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTC------C----S--------------------SCCCCEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhc------c----c--------------------CCCCEEEEEeCCHHHHHHH
Confidence 56789999999999998887665421100 0 0 0013569999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 69 ~~~~~~ 74 (555)
T 3tbk_A 69 ATVFSR 74 (555)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.26 E-value=2.3 Score=39.60 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=23.8
Q ss_pred HhcCCeEEEEcccccchhcc---------cccCCCcEEEEecCCCCCh
Q 038017 258 CFTKASLIFCTASSSYKLHS---------VAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~~---------~~~~~fD~vIIDEAsQ~~E 296 (610)
+...++|+++|+........ .....+++||||||-.+..
T Consensus 129 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 129 VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred hccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 44579999999876543211 2234689999999998854
No 83
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=60.25 E-value=3.2 Score=41.24 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456789999999999854
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=60.08 E-value=3.3 Score=39.06 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=15.8
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+.-+.++|+||+||||. +|++
T Consensus 20 Gei~~l~GpnGsGKSTL--l~~l 40 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTV--VRCL 40 (207)
T ss_dssp CCEEEEECSTTSSHHHH--HHHH
T ss_pred CCEEEEECCCCCCHHHH--HHHH
Confidence 44577999999999983 4444
No 85
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=59.97 E-value=3.3 Score=39.06 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=14.3
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 53 ~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45789999999999854
No 86
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.93 E-value=3.6 Score=37.06 Aligned_cols=17 Identities=47% Similarity=0.814 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..++++|.+|+||||.+
T Consensus 5 ~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34778999999999953
No 87
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=59.82 E-value=2.6 Score=40.01 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCCChhHHHhhccC--cCcceEEEeCCCCcCCcccccccccccccccCHHHHHHhcCCCc
Q 038017 282 QLKFLVIDEAAQLKESESAIPLQL--PCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSYLGHSK 349 (610)
Q Consensus 282 ~fD~vIIDEAsQ~~E~e~lipL~~--~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~~g~~~ 349 (610)
+=+++|||||.++.--|++.-+.. ..--++||+||..|+.- -+-|.-|...|.+.
T Consensus 121 p~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~-------------GnAl~vl~~agv~t 177 (189)
T 2l8b_A 121 PGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT-------------GSALMAMKDAGVNT 177 (189)
T ss_dssp CCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS-------------HHHHHHHHHTTCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC-------------CCHHHHHHhCCCce
Confidence 448999999999998886655542 12359999999988874 23366666666544
No 88
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=59.37 E-value=4.7 Score=41.23 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=43.8
Q ss_pred eChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccccee
Q 038017 512 VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILH 588 (610)
Q Consensus 512 vTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (610)
.++-|.+.+.. +.++++.++.|+|||.+.++-++..-. .. . ...+
T Consensus 44 ~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~----------~~---~-------------------~~~~ 91 (394)
T 1fuu_A 44 PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID----------TS---V-------------------KAPQ 91 (394)
T ss_dssp CCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCC----------TT---C-------------------CSCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhh----------cc---C-------------------CCCC
Confidence 44545444332 567899999999999988776654210 00 0 0135
Q ss_pred EEEEecCHHHHHHHHHHhhh
Q 038017 589 QLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 589 q~fvt~s~~L~~~vk~~~~~ 608 (610)
-|+|+.+..|+.|+.+.+.+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~ 111 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMA 111 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHH
Confidence 69999999999999887654
No 89
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=59.30 E-value=38 Score=40.71 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=49.1
Q ss_pred cEEEEecCCCCChhHHHh--hccCcCcceE--EEeCCCCcCCcccccccccccccc---cCHHHHHHh-cCCC---cccc
Q 038017 284 KFLVIDEAAQLKESESAI--PLQLPCIQHA--ILVGDECQLPAMVESSVSGEAYFG---RSLFERLSY-LGHS---KHLL 352 (610)
Q Consensus 284 D~vIIDEAsQ~~E~e~li--pL~~~~~k~~--ILvGD~~QLpP~v~s~~~~~~~l~---~SLFeRL~~-~g~~---~~~L 352 (610)
+.|+|||+-..+..+.-+ .|.. ..+++ +++||+.+.+.... ...-+++. ...|.++.. .+++ .+.|
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~-~~~~~~v~lvGD~~~~~~~~~--~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L 279 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMV-HAEHITFSLTADKPSYEREPH--ELELFRMTGKTYYRLHQKAKELNLDITYKELS 279 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHH-HCSEEEEEEECSSCCSSSCCC--TTCTTHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHH-hCCCEEEEEEeCcccccCCCC--CCCcchhHHHHHHHHHHHHHHcCCCcccceec
Confidence 799999999999875333 2322 23444 46799877541110 00111221 122333332 2333 6789
Q ss_pred ccccCCchhhhhcchhhh
Q 038017 353 SMQYRMHPSISFFPNSYF 370 (610)
Q Consensus 353 ~~QYRmhp~I~~f~s~~F 370 (610)
..+||+.+.|.++.+..+
T Consensus 280 ~~nyRs~~~il~~i~~~~ 297 (1166)
T 3u4q_B 280 GTERHTKTPELAHLEAQY 297 (1166)
T ss_dssp SCSTTTTCHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHhH
Confidence 999999999988887654
No 90
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.21 E-value=13 Score=36.05 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHhcCCeEEEEcccccchh----cccccCCCcEEEEecCCCCCh
Q 038017 255 KDFCFTKASLIFCTASSSYKL----HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l----~~~~~~~fD~vIIDEAsQ~~E 296 (610)
...+...++|+++|+...... ..+....+++||||||-.+..
T Consensus 155 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 155 SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 445567899999998765432 112345689999999975543
No 91
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=59.10 E-value=3.5 Score=39.76 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| +++++.
T Consensus 16 G~ii~l~GpsGsGKST--Llk~L~ 37 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSS--LIQALL 37 (219)
T ss_dssp CCEEEEECCTTSCHHH--HHHHHH
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 445543
No 92
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=59.03 E-value=10 Score=40.29 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.|+.|+|||.+++.-+++.... + | .+-++++....||.|+
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~------------~----------------~------~~~lil~Ptr~La~Q~ 53 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECAR------------R----------------R------LRTLVLAPTRVVLSEM 53 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHH------------T----------------T------CCEEEEESSHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHh------------c----------------C------CeEEEEcchHHHHHHH
Confidence 5678899999999999987777653110 0 0 3459999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+..
T Consensus 54 ~~~l~~ 59 (440)
T 1yks_A 54 KEAFHG 59 (440)
T ss_dssp HHHTTT
T ss_pred HHHHhc
Confidence 887654
No 93
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=58.62 E-value=5.8 Score=39.20 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=29.3
Q ss_pred HhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhH
Q 038017 258 CFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e 298 (610)
....++|+++|.....+........+++||||||-.+....
T Consensus 201 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~ 241 (282)
T 1rif_A 201 YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS 241 (282)
T ss_dssp CCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHH
T ss_pred hccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCccc
Confidence 34678999999866443322223478999999999998653
No 94
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=58.54 E-value=3.5 Score=41.49 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..++++|++|||||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456889999999999854
No 95
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.18 E-value=3.5 Score=36.87 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 4 i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 4 IILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 96
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.17 E-value=7.7 Score=41.73 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=43.6
Q ss_pred eeeChhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 510 FEVTDEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 510 favTr~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+.+++-|.+.|- -+.++++.++.|+|||.+.++-++..-.. . . . ...
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~----------~-~-~------------------~~~ 55 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQN----------M-P-A------------------GRK 55 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHT----------C-C-S------------------SCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHh----------C-c-c------------------cCC
Confidence 334444444332 25678999999999999887766543110 0 0 0 001
Q ss_pred eeEEEEecCHHHHHHHHHHhhh
Q 038017 587 LHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
.+-|+|+....|+.++.+.+.+
T Consensus 56 ~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 56 AKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 3569999999999998887754
No 97
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=58.02 E-value=12 Score=40.41 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=38.4
Q ss_pred CceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVK 603 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk 603 (610)
+++++.++.|+|||.+.++-++..- . .+. .-.+-||++....|+.|+.
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l----------~---~~~-------------------~~~~vLvl~P~~~L~~Q~~ 206 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRV----------D---ASV-------------------PKPQAICLAPSRELARQIM 206 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHS----------C---TTC-------------------CSCCEEEECSCHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH----------H---hCC-------------------CCceEEEEECcHHHHHHHH
Confidence 5688999999999998877666421 0 000 0035599999999999998
Q ss_pred HHhhh
Q 038017 604 QHISH 608 (610)
Q Consensus 604 ~~~~~ 608 (610)
+.+.+
T Consensus 207 ~~~~~ 211 (508)
T 3fho_A 207 DVVTE 211 (508)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 98
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.84 E-value=3.5 Score=37.76 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=14.4
Q ss_pred CceEEEccCCCCchhHHH
Q 038017 524 RSTFILGRSGTGKTTILT 541 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~ 541 (610)
.-+.++|+||+||||.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 346789999999999554
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=57.42 E-value=3.9 Score=41.28 Aligned_cols=17 Identities=53% Similarity=0.870 Sum_probs=14.5
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46889999999999864
No 100
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.16 E-value=4.1 Score=40.36 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999754
No 101
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.15 E-value=13 Score=35.70 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 253 LLKDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 253 ~i~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
.....+-+.++|+++|+.....+ .......+++||||||-.+.
T Consensus 144 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 189 (242)
T 3fe2_A 144 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML 189 (242)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHh
Confidence 33445566799999998765432 12234578999999996544
No 102
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=57.12 E-value=3.5 Score=38.57 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.++++|.||+||||.+
T Consensus 27 ~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLA 42 (200)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 103
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=56.85 E-value=4.1 Score=38.06 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.++++|.+|+||||.+
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999964
No 104
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=56.61 E-value=2.6 Score=43.34 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=15.5
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.++++.|++|||||++.-
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999997543
No 105
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.55 E-value=2.7 Score=41.11 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 445788999999999754
No 106
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.21 E-value=4.9 Score=38.15 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=28.2
Q ss_pred HHHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCC
Q 038017 255 KDFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~ 295 (610)
...+.+.++|++||+.....+. ......+++||||||=.+.
T Consensus 137 ~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 180 (228)
T 3iuy_A 137 IEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180 (228)
T ss_dssp HHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHh
Confidence 3456678999999987654321 2234568999999996544
No 107
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.09 E-value=4.3 Score=37.96 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=12.9
Q ss_pred ceEEEccCCCCchhH
Q 038017 525 STFILGRSGTGKTTI 539 (610)
Q Consensus 525 s~~vlGrSgtgktt~ 539 (610)
-++++|.+|+||||.
T Consensus 31 ~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 31 HVVVMGVSGSGKTTI 45 (200)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.94 E-value=4.3 Score=37.08 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=14.0
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
.++++|.+|+||||.+-
T Consensus 7 ~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999553
No 109
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=55.88 E-value=4.4 Score=39.68 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=14.9
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++|++.
T Consensus 27 ~~liG~nGsGKST--Ll~~l~ 45 (240)
T 2onk_A 27 CVLLGPTGAGKSV--FLELIA 45 (240)
T ss_dssp EEEECCTTSSHHH--HHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHh
Confidence 5679999999998 555554
No 110
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=55.27 E-value=8.8 Score=43.35 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.|+.|+|||++..+-++..... + -+-|+++....||.++
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~---------~--------------------------~~~l~i~P~r~La~q~ 84 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIK---------G--------------------------GKSLYVVPLRALAGEK 84 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHT---------T--------------------------CCEEEEESSHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh---------C--------------------------CcEEEEeCcHHHHHHH
Confidence 5678999999999999998877753210 0 2449999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 85 ~~~~~~ 90 (702)
T 2p6r_A 85 YESFKK 90 (702)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 988754
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.24 E-value=4.5 Score=37.48 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.8
Q ss_pred ceEEEccCCCCchhHHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
-+.++|.+|+||||. .+++..
T Consensus 8 ~i~l~G~~GsGKSTl--~~~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTV--RKRIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHH--HHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHH
Confidence 467899999999984 455543
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.96 E-value=4.5 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
.++.|.+|+||||.+-
T Consensus 4 I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4689999999999543
No 113
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.85 E-value=14 Score=37.92 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCC
Q 038017 254 LKDFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~ 295 (610)
....+...++|++||+.....+. .+....+++||||||=.+.
T Consensus 144 ~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 144 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 34456678999999987654321 1334568999999997654
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=54.82 E-value=7.6 Score=41.55 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.0
Q ss_pred ceEEEccCCCCchhHHHH
Q 038017 525 STFILGRSGTGKTTILTM 542 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~ 542 (610)
..++.|..|||||+.+..
T Consensus 47 ~~li~G~aGTGKT~ll~~ 64 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKF 64 (459)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 688999999999986543
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=54.73 E-value=4.6 Score=38.03 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|+|+||+||||.+
T Consensus 25 v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 25 VALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEECCTTSCTHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999854
No 116
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.73 E-value=4.4 Score=40.35 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.3
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999855
No 117
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.72 E-value=4.4 Score=37.65 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++|++.
T Consensus 3 i~l~G~nGsGKTT--Ll~~l~ 21 (178)
T 1ye8_A 3 IIITGEPGVGKTT--LVKKIV 21 (178)
T ss_dssp EEEECCTTSSHHH--HHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHH
Confidence 5689999999999 445544
No 118
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=54.70 E-value=4.6 Score=40.24 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=16.1
Q ss_pred CceEEEccCCCCchhHHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
..+.++|++||||||. .|.+..
T Consensus 45 ~GvlL~Gp~GtGKTtL--akala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL--AKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHH--HHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHH
Confidence 3478899999999984 444443
No 119
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.36 E-value=4.6 Score=39.92 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..++++|++||||||.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34789999999999843
No 120
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=54.32 E-value=16 Score=41.22 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=45.6
Q ss_pred eeChhhceEEE----cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 511 EVTDEQLEMIL----FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 511 avTr~e~~vI~----~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
.+++-|.+++. -++++++.|+.|+|||++..+-++..... + |
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~----------------~------ 75 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------------N----------------G------ 75 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH------------S----------------C------
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH------------C----------------C------
Confidence 35555655442 25679999999999999998877753210 0 0
Q ss_pred eeEEEEecCHHHHHHHHHHhhh
Q 038017 587 LHQLFVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~vk~~~~~ 608 (610)
-+-|+++....||.++.+.+.+
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGG
T ss_pred CeEEEEeCcHHHHHHHHHHHHH
Confidence 2458999999999999888744
No 121
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=53.90 E-value=4.6 Score=38.63 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=9.8
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.-+.++|++|+||||.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEEEEECSCC----CHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999954
No 122
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=53.73 E-value=6.8 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCCh
Q 038017 256 DFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~E 296 (610)
..+...++|+++|+....... ......++++|||||-.+..
T Consensus 117 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 117 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 445577899999987643321 12345789999999976544
No 123
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.43 E-value=5 Score=38.28 Aligned_cols=17 Identities=29% Similarity=0.726 Sum_probs=13.6
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+..++++|+||+||||.
T Consensus 19 g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECcCCCCHHHH
Confidence 33467899999999984
No 124
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.15 E-value=5.4 Score=36.33 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+++.|.+|+||||.+
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 34778999999999954
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=53.10 E-value=5.8 Score=37.82 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=15.3
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+..+.++|++|+||||.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH
Confidence 5557899999999999543
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.03 E-value=5.1 Score=40.92 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=17.3
Q ss_pred CceEEEccCCCCchhHHHHHHHHHh
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
..++++|++|+|||| +.|.+..+
T Consensus 52 ~~~ll~Gp~G~GKTT--La~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTT--LAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHH--HHHHHHHH
T ss_pred CeEEEECCCCCcHHH--HHHHHHHH
Confidence 457889999999998 45555544
No 127
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=52.94 E-value=7.8 Score=43.86 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=52.2
Q ss_pred CCCcEEEEecCCCCChhHHHhhccCcCcceEEEeCCCCcCCcccccccccccccccCHHHHHHh--cCCCccccccccCC
Q 038017 281 EQLKFLVIDEAAQLKESESAIPLQLPCIQHAILVGDECQLPAMVESSVSGEAYFGRSLFERLSY--LGHSKHLLSMQYRM 358 (610)
Q Consensus 281 ~~fD~vIIDEAsQ~~E~e~lipL~~~~~k~~ILvGD~~QLpP~v~s~~~~~~~l~~SLFeRL~~--~g~~~~~L~~QYRm 358 (610)
...|+|||||||.++.+-.-.-+. +..+++|++.-.+... -++++--++.. .....+.|++-.|-
T Consensus 254 ~~~dlliVDEAAaIp~pll~~ll~--~~~~v~~~tTv~GYEG-----------tGrgf~lk~~~~L~~~~~~~L~~piR~ 320 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPLLHQLVS--RFPRTLLTTTVQGYEG-----------TGRGFLLKFCARFPHLHRFELQQPIRW 320 (671)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHHT--TSSEEEEEEEBSSTTB-----------BCHHHHHHHHHTSTTCEEEECCSCSSS
T ss_pred ccCCEEEEEchhcCCHHHHHHHHh--hCCeEEEEecCCcCCC-----------cCcccccccHhhcCCCcEEEccCceec
Confidence 357999999999999775443333 3468999887776553 23443222222 23667888888887
Q ss_pred c--hhhhhcchhhhc
Q 038017 359 H--PSISFFPNSYFY 371 (610)
Q Consensus 359 h--p~I~~f~s~~FY 371 (610)
. -.|-.|.+..+-
T Consensus 321 a~~DplE~wl~~~ll 335 (671)
T 2zpa_A 321 AQGCPLEKMVSEALV 335 (671)
T ss_dssp CTTCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhhC
Confidence 4 478888887764
No 128
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.88 E-value=5.5 Score=37.32 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=13.8
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+..++++|.||+||||.
T Consensus 12 ~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34577899999999993
No 129
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.84 E-value=5.4 Score=38.35 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=24.3
Q ss_pred cCCeEEEEcccccchhcccccCCCcEEEEecCCCC
Q 038017 260 TKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 260 ~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~ 294 (610)
..++|++||+....+........+++||||||-..
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHER 188 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSC
T ss_pred CCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccC
Confidence 46889999985433321113457899999999875
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=52.83 E-value=4.6 Score=41.15 Aligned_cols=18 Identities=39% Similarity=0.805 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456889999999999854
No 131
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=52.73 E-value=13 Score=36.20 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=28.7
Q ss_pred hHHHHHHhcCCeEEEEcccccchh----cccccCCCcEEEEecCCCCC
Q 038017 252 GLLKDFCFTKASLIFCTASSSYKL----HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 252 ~~i~~~il~~a~VI~~T~sss~~l----~~~~~~~fD~vIIDEAsQ~~ 295 (610)
......+...++||++|+...... .......+++||||||=.+.
T Consensus 167 ~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 167 SAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHh
Confidence 333445567799999997654321 11234568999999997544
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.56 E-value=4.2 Score=37.40 Aligned_cols=19 Identities=42% Similarity=0.586 Sum_probs=14.5
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
..++|++|+|||| +.|++.
T Consensus 5 i~l~G~~GaGKST--l~~~L~ 23 (189)
T 2bdt_A 5 YIITGPAGVGKST--TCKRLA 23 (189)
T ss_dssp EEEECSTTSSHHH--HHHHHH
T ss_pred EEEECCCCCcHHH--HHHHHh
Confidence 5689999999999 444443
No 133
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=52.50 E-value=12 Score=42.37 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=40.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++++++.|+.|+|||++..+-++..... + | -+-|+++....|+.++
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~-----~-----------------------~------~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILT-----Q-----------------------G------GKAVYIVPLKALAEEK 84 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHH-----H-----------------------C------SEEEEECSSGGGHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh-----C-----------------------C------CEEEEEcCcHHHHHHH
Confidence 5678999999999999988877753210 0 0 2458999999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+.++
T Consensus 85 ~~~~~~l 91 (720)
T 2zj8_A 85 FQEFQDW 91 (720)
T ss_dssp HHHTGGG
T ss_pred HHHHHHH
Confidence 9887543
No 134
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=52.47 E-value=14 Score=41.37 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=41.5
Q ss_pred eEEEcCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHH
Q 038017 518 EMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPK 597 (610)
Q Consensus 518 ~vI~~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~ 597 (610)
.++.-++++++.++.|+|||++++..++..... . | .+-|+++....
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~-------------------~------~~vLvl~Ptre 226 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------R-------------------R------LRTLILAPTRV 226 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------T-------------------T------CCEEEEESSHH
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------C-------------------C------CeEEEEcChHH
Confidence 334447789999999999999988887754211 0 0 45589999999
Q ss_pred HHHHHHHHhh
Q 038017 598 LCFAVKQHIS 607 (610)
Q Consensus 598 L~~~vk~~~~ 607 (610)
||.|+.+.+.
T Consensus 227 La~Qi~~~l~ 236 (618)
T 2whx_A 227 VAAEMEEALR 236 (618)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999987763
No 135
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=52.35 E-value=4.2 Score=39.94 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.1
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35788999999999854
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=52.23 E-value=4.9 Score=36.39 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 11 i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 11 YVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999953
No 137
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=51.73 E-value=6.3 Score=37.67 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 22 Ge~~~liG~nGsGKST--Ll~~l~ 43 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTY--LAMAKA 43 (208)
T ss_dssp CSEEEEECCTTSSTTH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4446789999999998 455554
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.64 E-value=6.3 Score=37.03 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+.-+.++|++|+||||.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4457799999999998543
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=51.61 E-value=5.3 Score=40.49 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345789999999999754
No 140
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=51.47 E-value=5.2 Score=40.88 Aligned_cols=17 Identities=53% Similarity=0.860 Sum_probs=14.3
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46889999999999843
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.43 E-value=5.7 Score=36.96 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|++|+|||+.+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999854
No 142
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=51.40 E-value=5.9 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|.+|||||+.+
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 346889999999999754
No 143
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.25 E-value=5.5 Score=38.73 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 31 Ge~~~iiG~nGsGKST--Ll~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKST--MLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 566654
No 144
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=51.22 E-value=5.5 Score=37.54 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=25.9
Q ss_pred HhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 258 CFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
.+..++|+++|+...... .......+++||||||-.+.
T Consensus 128 ~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 128 GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp -CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 455699999998764432 12234568999999997653
No 145
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=51.04 E-value=15 Score=34.76 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=27.8
Q ss_pred HHhcCCeEEEEcccccchhc----ccccCCCcEEEEecCCCCCh
Q 038017 257 FCFTKASLIFCTASSSYKLH----SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l~----~~~~~~fD~vIIDEAsQ~~E 296 (610)
..+..++||++|+....... ......+++||||||-.+..
T Consensus 142 ~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 142 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD 185 (236)
T ss_dssp HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH
T ss_pred HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc
Confidence 34578999999987654321 13345789999999986643
No 146
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=51.03 E-value=16 Score=41.35 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=39.7
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHH
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFA 601 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~ 601 (610)
-++++++.|+.|+|||.+++.-++..-.. + | .+-++++....||.|
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~------------~----------------~------~~~lilaPTr~La~Q 285 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------K----------------R------LRTAVLAPTRVVAAE 285 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHH------------T----------------T------CCEEEEESSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHh------------C----------------C------CcEEEEccHHHHHHH
Confidence 36678999999999999988777753110 0 0 345899999999999
Q ss_pred HHHHhhh
Q 038017 602 VKQHISH 608 (610)
Q Consensus 602 vk~~~~~ 608 (610)
+.+.+..
T Consensus 286 ~~~~l~~ 292 (673)
T 2wv9_A 286 MAEALRG 292 (673)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 8887654
No 147
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.98 E-value=5.6 Score=39.91 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=14.1
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+++.|++|||||+.+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999743
No 148
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=50.87 E-value=7.5 Score=36.89 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
+..+.++|++|+||||.+..-+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4457899999999999665433
No 149
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=50.84 E-value=8.5 Score=36.23 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEcCCceEEEccCCCCchhHHHHHH
Q 038017 519 MILFPRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 519 vI~~~~s~~vlGrSgtgktt~~~~kl 544 (610)
|.+.+..+++.|.||+||+|.++.-+
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 44557789999999999999877654
No 150
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=50.65 E-value=5.6 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356889999999999743
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=50.46 E-value=7.7 Score=36.33 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
+..+.++|++|+||||.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 44577899999999986543
No 152
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=50.34 E-value=5.4 Score=38.03 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCC
Q 038017 256 DFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~ 294 (610)
...+..++|+++|+.....+. .+....++++|||||=.+
T Consensus 137 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 137 KTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp HHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred HHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 445678999999987654321 122346899999999765
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.12 E-value=6 Score=40.22 Aligned_cols=18 Identities=50% Similarity=0.962 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+++.|++||||||.+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346789999999999864
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=49.75 E-value=6.9 Score=36.52 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
+.-+.++|++|+||||.+..-.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3447789999999999665433
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=49.72 E-value=6.5 Score=36.12 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|++|||||+.+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999854
No 156
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=49.51 E-value=6.3 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456889999999999854
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=49.37 E-value=7.1 Score=39.02 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=14.4
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46889999999999854
No 158
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.32 E-value=7.7 Score=37.35 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 30 Ge~~~iiG~nGsGKST--Ll~~l~ 51 (224)
T 2pcj_A 30 GEFVSIIGASGSGKST--LLYILG 51 (224)
T ss_dssp TCEEEEEECTTSCHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 456554
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=48.23 E-value=6 Score=39.21 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.8
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+.++|++|+||||.+
T Consensus 26 ~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTI 42 (261)
T ss_dssp EEEEEECSTTCSHHHHH
T ss_pred CEEEEECCCCccHHHHH
Confidence 34678999999999843
No 160
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=48.17 E-value=7.1 Score=41.84 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=40.7
Q ss_pred hcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhH-----HHhhccCcCcceEEEeCCCCcC
Q 038017 259 FTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESE-----SAIPLQLPCIQHAILVGDECQL 320 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e-----~lipL~~~~~k~~ILvGD~~QL 320 (610)
...++||++|.........+....|++||+|||-.+.... .+..+ ....++.|-|=|.|-
T Consensus 126 ~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l--~~~~~l~LTaTP~~n 190 (500)
T 1z63_A 126 LEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL--KSKYRIALTGTPIEN 190 (500)
T ss_dssp GGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS--CEEEEEEECSSCSTT
T ss_pred ccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh--ccCcEEEEecCCCCC
Confidence 4568899999876554333455689999999998886432 23223 234678888877664
No 161
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=48.00 E-value=13 Score=39.94 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=46.0
Q ss_pred ceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCcccc
Q 038017 509 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERY 585 (610)
Q Consensus 509 nfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (610)
++.+++.|...|.. +.+.++.|..|+|||.+.+.-++..-. .+ +
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~---------~~--~---------------------- 157 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE---------NY--E---------------------- 157 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH---------HC--S----------------------
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh---------CC--C----------------------
Confidence 45677777665543 457899999999999988654332100 00 0
Q ss_pred ceeEEEEecCHHHHHHHHHHhhhc
Q 038017 586 ILHQLFVTVSPKLCFAVKQHISHM 609 (610)
Q Consensus 586 ~l~q~fvt~s~~L~~~vk~~~~~l 609 (610)
-+-|+|+..-.|+.|+.+.+.++
T Consensus 158 -~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 158 -GKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp -SEEEEEESSHHHHHHHHHHHHHT
T ss_pred -CeEEEEECcHHHHHHHHHHHHHh
Confidence 14589999999999999888653
No 162
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=47.96 E-value=16 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 261 KASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 261 ~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
.++|+++|+.....+ .......+++||||||-.+.
T Consensus 149 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 186 (237)
T 3bor_A 149 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 186 (237)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHH
T ss_pred CCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhh
Confidence 389999998664332 11234568999999998653
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.91 E-value=6.6 Score=36.51 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-++++|.+|+||||.+
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999953
No 164
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.26 E-value=7.6 Score=36.46 Aligned_cols=16 Identities=50% Similarity=0.902 Sum_probs=13.3
Q ss_pred CceEEEccCCCCchhH
Q 038017 524 RSTFILGRSGTGKTTI 539 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~ 539 (610)
..+.++|++|+||||.
T Consensus 2 ~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCEEEESCCSSCHHHH
T ss_pred CEEEEECCCCChHHHH
Confidence 3467899999999984
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=47.20 E-value=7.2 Score=39.38 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.2
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35789999999999854
No 166
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=47.16 E-value=16 Score=38.63 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.1
Q ss_pred ceeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHH
Q 038017 509 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 509 nfavTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.+++.|.+.+.. +...++.+..|+|||.+.+.-+.
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~ 130 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN 130 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHH
Confidence 45566666655442 34588999999999998776554
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=47.09 E-value=6.9 Score=35.17 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 5 I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEecCCCCCHHHHH
Confidence 568999999999954
No 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.92 E-value=7 Score=35.54 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 4 I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 169
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=46.81 E-value=11 Score=36.29 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEcCCceEEEccCCCCchhHHHH
Q 038017 519 MILFPRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 519 vI~~~~s~~vlGrSgtgktt~~~~ 542 (610)
|.+.+..+++.|+||+|||+.++.
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHHHH
Confidence 444466688999999999986654
No 170
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=46.69 E-value=8.4 Score=37.74 Aligned_cols=22 Identities=50% Similarity=0.640 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 35 Ge~~~i~G~nGsGKST--Ll~~l~ 56 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKST--LTKLIQ 56 (247)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 455543
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=46.62 E-value=8.8 Score=36.41 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.++|++|+||||.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45578999999999997543
No 172
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=46.52 E-value=7.3 Score=37.92 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 31 Ge~~~i~G~nGsGKST--Ll~~l~ 52 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSS--LLSALL 52 (237)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3457799999999998 555543
No 173
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=46.52 E-value=17 Score=41.13 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++.++++|+.|+|||+.++.+++.. . +.++++.-..||.|+
T Consensus 155 rk~vlv~apTGSGKT~~al~~l~~~------------~---------------------------~gl~l~PtR~LA~Qi 195 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQKYFSA------------K---------------------------SGVYCGPLKLLAHEI 195 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS------------S---------------------------SEEEEESSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc------------C---------------------------CeEEEeCHHHHHHHH
Confidence 3467889999999999665555421 0 017888888999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 196 ~~~l~~ 201 (677)
T 3rc3_A 196 FEKSNA 201 (677)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877654
No 174
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.51 E-value=6.4 Score=36.77 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=14.5
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+||||. .+++.
T Consensus 9 i~i~G~~GsGKSTl--~~~l~ 27 (211)
T 3asz_A 9 IGIAGGTASGKTTL--AQALA 27 (211)
T ss_dssp EEEEESTTSSHHHH--HHHHH
T ss_pred EEEECCCCCCHHHH--HHHHH
Confidence 56899999999984 44444
No 175
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=46.34 E-value=14 Score=44.45 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=47.3
Q ss_pred cceeeChhhceEEEc-------CC--ceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhc
Q 038017 508 LPFEVTDEQLEMILF-------PR--STFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEG 578 (610)
Q Consensus 508 lnfavTr~e~~vI~~-------~~--s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 578 (610)
++|..|+.|...|-. +. +.+++|+.|+|||.+++.-.+.. .. .
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~------~~-------~--------------- 651 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA------VD-------N--------------- 651 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH------HT-------T---------------
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH------HH-------h---------------
Confidence 678889988876642 33 78999999999998876555432 00 0
Q ss_pred CCCccccceeEEEEecCHHHHHHHHHHhh
Q 038017 579 LGGTERYILHQLFVTVSPKLCFAVKQHIS 607 (610)
Q Consensus 579 ~~~~~~~~l~q~fvt~s~~L~~~vk~~~~ 607 (610)
| .+-+|++....||+|+.+.+.
T Consensus 652 -g------~~vlvlvPt~~La~Q~~~~~~ 673 (1151)
T 2eyq_A 652 -H------KQVAVLVPTTLLAQQHYDNFR 673 (1151)
T ss_dssp -T------CEEEEECSSHHHHHHHHHHHH
T ss_pred -C------CeEEEEechHHHHHHHHHHHH
Confidence 0 245899999999999887775
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.32 E-value=7.3 Score=37.61 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=13.8
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.-+.++|++|+||||.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34778999999999843
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=46.20 E-value=7.4 Score=41.55 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=14.5
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.+++++|++|||||+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999854
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=46.18 E-value=7.4 Score=35.36 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 6 I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 6 VVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999953
No 179
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.03 E-value=7.2 Score=41.83 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++.++++|++|||||+. .|-+..
T Consensus 215 prGvLLyGPPGTGKTll--AkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLL--ARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHH--HHHHHH
T ss_pred CCeeEEECcCCCCHHHH--HHHHHH
Confidence 56789999999999963 444443
No 180
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=45.98 E-value=7.8 Score=40.00 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456889999999999754
No 181
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.78 E-value=8.1 Score=38.69 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.||+||||.+
T Consensus 36 ivl~G~sGsGKSTla 50 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEECCTTSCTHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 182
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.44 E-value=21 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.5
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+++.++.|+|||++.+..++..
T Consensus 22 ~lv~a~TGsGKT~~~~~~~l~~ 43 (451)
T 2jlq_A 22 TIMDLHPGAGKTKRILPSIVRE 43 (451)
T ss_dssp EEECCCTTSSCCTTHHHHHHHH
T ss_pred EEEECCCCCCHhhHHHHHHHHH
Confidence 4788999999999988887753
No 183
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=45.42 E-value=7.7 Score=38.40 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 32 Ge~~~liG~nGsGKST--Llk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKST--FLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3446799999999998 555553
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.27 E-value=7.6 Score=41.54 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
++..++.|++|||||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 55689999999999964
No 185
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=45.26 E-value=8 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346889999999999753
No 186
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=45.19 E-value=7.4 Score=40.43 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=29.7
Q ss_pred HHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 256 DFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
......++|++||....... ..+....+++||||||=.+..
T Consensus 96 ~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 96 SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 34456789999998765432 123456799999999998874
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=45.07 E-value=7.8 Score=39.28 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=14.2
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 153 ~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46789999999999754
No 188
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=44.98 E-value=9.9 Score=36.46 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 35 Ge~~~iiG~NGsGKST--Llk~l~ 56 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTT--LLKTIS 56 (214)
T ss_dssp TCCEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556653
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.94 E-value=7.6 Score=39.71 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 345889999999999854
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=44.93 E-value=7.8 Score=39.56 Aligned_cols=16 Identities=56% Similarity=0.864 Sum_probs=13.9
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|++|||||+.+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999865
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=44.60 E-value=7.9 Score=39.91 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446889999999999754
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=44.58 E-value=9.6 Score=34.60 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.1
Q ss_pred CceEEEccCCCCchhHHHH
Q 038017 524 RSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~ 542 (610)
.-..++|++|+||||.+-.
T Consensus 27 g~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp SEEEEEECTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3467899999999996543
No 193
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.57 E-value=7.8 Score=41.58 Aligned_cols=17 Identities=41% Similarity=0.872 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
++.++++|++|||||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56789999999999964
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.38 E-value=8.3 Score=40.97 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++.+++.|++|||||.. .|-++.
T Consensus 182 prGvLL~GPPGTGKTll--AkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL--ARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHH--HHHHHH
T ss_pred CCceEEeCCCCCCHHHH--HHHHHH
Confidence 55689999999999963 444443
No 195
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.36 E-value=13 Score=40.98 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=24.3
Q ss_pred HhcCCeEEEEcccccchh-------cccccCCCcEEEEecCCCCCh
Q 038017 258 CFTKASLIFCTASSSYKL-------HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l-------~~~~~~~fD~vIIDEAsQ~~E 296 (610)
.-..++|+++|....... ..+....|++||||||=.+..
T Consensus 271 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 271 VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 345789999998765432 223445699999999988864
No 196
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=44.35 E-value=8.5 Score=35.38 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=16.2
Q ss_pred ceEEEccCCCCchhHHHHHHHHHh
Q 038017 525 STFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
.++++|.+|+||||.+ +++...
T Consensus 12 ~I~l~G~~GsGKSTv~--~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMA--EMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHH--HHHHHH
T ss_pred EEEEECCCCCCHHHHH--HHHHHh
Confidence 3678999999999964 455443
No 197
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=44.30 E-value=9.6 Score=37.50 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~liG~nGsGKST--Llk~l~ 54 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKST--LINVIT 54 (257)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 555543
No 198
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=44.10 E-value=7.4 Score=37.95 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=16.2
Q ss_pred CceEEEccCCCCchhHHHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.-+.++|++|+|||| ++|++.
T Consensus 29 e~~~i~G~nGsGKST--Ll~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKST--IFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHH--HHHHHT
T ss_pred CEEEEECCCCCCHHH--HHHHHh
Confidence 347789999999998 555554
No 199
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=44.09 E-value=12 Score=34.96 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 261 KASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 261 ~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
.++|+++|+.....+ .......+++||||||-.+.+
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 469999998764432 123345789999999987643
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=44.00 E-value=7.7 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.6
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.++|++|+|||| ++|++..
T Consensus 36 v~L~G~nGaGKTT--Llr~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTT--LTRGMLQ 55 (158)
T ss_dssp EEEECSTTSSHHH--HHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHH
Confidence 6689999999998 5566543
No 201
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.96 E-value=8.1 Score=35.25 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 8 I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 8 IIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999954
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.71 E-value=8.2 Score=36.35 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.+.+.|.+|+||||. .+++.
T Consensus 7 ~i~i~G~~GsGKSTl--~~~L~ 26 (227)
T 1cke_A 7 VITIDGPSGAGKGTL--CKAMA 26 (227)
T ss_dssp EEEEECCTTSSHHHH--HHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHH
Confidence 367899999999994 44444
No 203
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=43.63 E-value=7.5 Score=39.26 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++|||||+.+
T Consensus 46 ~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCEEEECCGGGCTTHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 35789999999999753
No 204
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=43.60 E-value=10 Score=36.64 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 34 Ge~~~i~G~nGsGKST--Ll~~l~ 55 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTS--LLMMIM 55 (229)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 455553
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=43.59 E-value=11 Score=37.15 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.7
Q ss_pred cCCceEEEccCCCCchhHHHH
Q 038017 522 FPRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~ 542 (610)
-++.+.++|++|+||||.+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 355688999999999996544
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.45 E-value=7.8 Score=38.43 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|++|||||+.+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999754
No 207
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=43.23 E-value=10 Score=37.59 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 37 Ge~~~liG~nGsGKST--Ll~~l~ 58 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKST--LLRLLT 58 (266)
T ss_dssp TCEEEEECCTTSCHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 556553
No 208
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.19 E-value=10 Score=37.12 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 29 Ge~~~l~G~nGsGKST--Llk~l~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKST--LGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 209
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.18 E-value=22 Score=35.13 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCC
Q 038017 257 FCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 257 ~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~ 295 (610)
..+..++|+++|+....... ......+++||||||=.+.
T Consensus 101 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 142 (337)
T 2z0m_A 101 NRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF 142 (337)
T ss_dssp HHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH
T ss_pred hhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh
Confidence 34567999999987644321 1233468999999997654
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.13 E-value=8.8 Score=38.95 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=13.1
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+.++|++|+||||.+
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999843
No 211
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=43.08 E-value=8.8 Score=37.92 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 46 Ge~~~i~G~nGsGKST--Ll~~l~ 67 (260)
T 2ghi_A 46 GTTCALVGHTGSGKST--IAKLLY 67 (260)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 555554
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=43.06 E-value=4.6 Score=38.12 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=18.3
Q ss_pred eChhhceEEEc--CCceEEEccCCCCchhHH
Q 038017 512 VTDEQLEMILF--PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 512 vTr~e~~vI~~--~~s~~vlGrSgtgktt~~ 540 (610)
+++.++..... +.-+++.|.+|+||||.+
T Consensus 12 ~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTELRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHHHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcccCCCCCEEEEECCCCCCHHHHH
Confidence 44444444332 223668999999999854
No 213
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.05 E-value=10 Score=36.83 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 32 Ge~~~l~G~nGsGKST--Ll~~l~ 53 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTT--TLSAIA 53 (240)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 214
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=43.03 E-value=6.8 Score=36.88 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=24.7
Q ss_pred cCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCC
Q 038017 260 TKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 260 ~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~ 295 (610)
..++|+++|+....... ......++++|||||-.+.
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 46889999986644321 1233468999999997654
No 215
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.79 E-value=10 Score=37.83 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 34 Ge~~~iiGpnGsGKST--Ll~~l~ 55 (275)
T 3gfo_A 34 GEVTAILGGNGVGKST--LFQNFN 55 (275)
T ss_dssp TSEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4457799999999998 555553
No 216
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.63 E-value=9 Score=35.65 Aligned_cols=19 Identities=47% Similarity=0.660 Sum_probs=14.7
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+.|.+|+||||.+ +++.
T Consensus 5 i~l~G~~GsGKST~~--~~La 23 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA--NLFT 23 (206)
T ss_dssp EEEECSTTSCHHHHH--HHHH
T ss_pred EEEECCCCCCHHHHH--HHHH
Confidence 568999999999954 5554
No 217
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=42.63 E-value=9 Score=38.13 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 45 Ge~~~i~G~nGsGKST--Llk~l~ 66 (271)
T 2ixe_A 45 GKVTALVGPNGSGKST--VAALLQ 66 (271)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 3447789999999998 555553
No 218
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=42.58 E-value=29 Score=33.98 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=35.4
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+...++.++.|+|||.+++.-+... +. .+. -+-|||+....|+.++
T Consensus 128 ~~~~ll~~~tGsGKT~~~~~~~~~~-----~~----~~~-------------------------~~~lil~Pt~~L~~q~ 173 (282)
T 1rif_A 128 NRRRILNLPTSAGRSLIQALLARYY-----LE----NYE-------------------------GKILIIVPTTALTTQM 173 (282)
T ss_dssp HSEEEECCCTTSCHHHHHHHHHHHH-----HH----HCS-------------------------SEEEEECSSHHHHHHH
T ss_pred cCCeEEEcCCCCCcHHHHHHHHHHH-----HH----cCC-------------------------CeEEEEECCHHHHHHH
Confidence 3456789999999999886543221 00 000 1458999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 174 ~~~l~~ 179 (282)
T 1rif_A 174 ADDFVD 179 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 219
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=42.53 E-value=9 Score=38.01 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 50 Gei~~liG~NGsGKST--Llk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKST--FLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEEcCCCCcHHH--HHHHHH
Confidence 3447799999999998 555554
No 220
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=42.49 E-value=9.8 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.5
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
+.-+.++|++|+||||.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHH
Confidence 34577899999999996543
No 221
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=42.47 E-value=9.3 Score=37.91 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|++|+|||| ++|++.
T Consensus 30 Ge~~~i~G~NGsGKST--Llk~l~ 51 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTT--LLRAIS 51 (263)
T ss_dssp SSEEEEECCTTSSHHH--HHHHHT
T ss_pred CEEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556654
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=42.27 E-value=8.9 Score=40.04 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 30 Ge~~~llGpsGsGKST--LLr~ia 51 (359)
T 3fvq_A 30 GEILFIIGASGCGKTT--LLRCLA 51 (359)
T ss_dssp TCEEEEEESTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCchHHH--HHHHHh
Confidence 3446789999999998 566654
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.08 E-value=9.9 Score=38.33 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=14.8
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|.+|||||+.+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 446889999999999754
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=41.95 E-value=10 Score=37.37 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..++++|.+|+||||.+
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345788999999999953
No 225
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=41.73 E-value=9.4 Score=37.84 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 46 Ge~~~l~G~NGsGKST--Llk~l~ 67 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKST--LSATLA 67 (267)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 455554
No 226
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=41.71 E-value=9.5 Score=39.72 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=15.0
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999754
No 227
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.58 E-value=9.6 Score=34.46 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=13.4
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|.+|+||||.+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3678999999999954
No 228
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.31 E-value=9.7 Score=37.59 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 41 Gei~~l~G~NGsGKST--Llk~l~ 62 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTT--TLRIIS 62 (256)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CcEEEEECCCCCCHHH--HHHHHh
Confidence 3447799999999998 556653
No 229
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.30 E-value=9.7 Score=37.70 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 33 Ge~~~liG~nGsGKST--Ll~~i~ 54 (266)
T 2yz2_A 33 GECLLVAGNTGSGKST--LLQIVA 54 (266)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3446799999999998 555553
No 230
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.25 E-value=11 Score=37.60 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 47 Ge~~~liG~NGsGKST--Llk~l~ 68 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTT--LLNILN 68 (279)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 566654
No 231
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=41.20 E-value=9.9 Score=39.44 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|++|+|||| +++++.
T Consensus 175 G~~i~ivG~sGsGKST--ll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTT--LMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 5568899999999998 445544
No 232
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=41.19 E-value=11 Score=39.19 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 41 Ge~~~llGpnGsGKST--LLr~ia 62 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTT--ILRLIA 62 (355)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 566654
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.02 E-value=9.5 Score=40.79 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=16.9
Q ss_pred CceEEEccCCCCchhHHHHHHHHHh
Q 038017 524 RSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
.++++.|++|||||+.+ +.+..+
T Consensus 64 ~~iLl~GppGtGKT~la--~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA--LAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHH--HHHHHH
T ss_pred CeEEEECCCcCCHHHHH--HHHHHH
Confidence 46889999999999754 444443
No 234
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.94 E-value=11 Score=36.94 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 31 Ge~~~l~G~nGsGKST--Ll~~l~ 52 (253)
T 2nq2_C 31 GDILAVLGQNGCGKST--LLDLLL 52 (253)
T ss_dssp TCEEEEECCSSSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 556553
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.93 E-value=9.9 Score=34.88 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=12.2
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+++.|.+|+||||.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 56899999999994
No 236
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=40.88 E-value=32 Score=39.66 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=47.1
Q ss_pred CCcCCCcccChhhhhhcCcchhHHHHHHHHHhhhhhhcCCCceEEEEeeccCCCCceeEEEEecccccCCCCCCCCCccC
Q 038017 1 VKQIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKT 80 (610)
Q Consensus 1 v~~ip~~F~s~~~Y~~sf~~pL~eEt~~~l~Ssl~~~~~ap~~~i~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~y~p 80 (610)
+..||++|.|+.+|.+.|.|.|.-|-.+|.. ++......-..+.+ .... .+.....+.+.. . ......
T Consensus 175 ~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~--~~e~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~------~~~~~l 242 (800)
T 2wjy_A 175 PQHVLLRYEDAYQYQNIFGPLVKLEADYDKK--LKESQTQDNITVRW-DLGL-NKKRIAYFTLPK--T------DSDMRL 242 (800)
T ss_dssp CCCCCSCCSCHHHHHHHHHHHHHHHHHHHHH--HHHHTCEEEECCEE-EECT-TCCEEEEECCCB--C------CC--CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhhhhccceEEEE-EecC-CCeeEEEEEecc--c------cCCCCC
Confidence 3579999999999999999999888777653 11101111112222 1111 222233344432 1 122467
Q ss_pred CCCCEEEeccCCCC
Q 038017 81 LPGDILVLADAKPE 94 (610)
Q Consensus 81 ~~gDii~lt~~kP~ 94 (610)
.+||++.|+...|.
T Consensus 243 ~~GD~v~l~~~~~~ 256 (800)
T 2wjy_A 243 MQGDEICLRYKGDL 256 (800)
T ss_dssp CTTCEEEEEECSSS
T ss_pred CCCCEEEEEECCCC
Confidence 89999999976664
No 237
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=40.85 E-value=9.7 Score=39.87 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 29 Ge~~~llGpnGsGKST--LLr~ia 50 (372)
T 1g29_1 29 GEFMILLGPSGCGKTT--TLRMIA 50 (372)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCcHHHH--HHHHHH
Confidence 4457799999999998 566654
No 238
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.77 E-value=9.9 Score=38.73 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|+||+|||| +++++.
T Consensus 126 Ge~vaIvGpsGsGKST--Ll~lL~ 147 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSM--LCNSLI 147 (305)
T ss_dssp CSEEEEECSSSSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3346789999999998 444444
No 239
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=40.73 E-value=13 Score=39.87 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHhcCCeEEEEcccccchhcc---c-ccCCCcEEEEecCCCCChh
Q 038017 256 DFCFTKASLIFCTASSSYKLHS---V-AMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~~---~-~~~~fD~vIIDEAsQ~~E~ 297 (610)
..+...++||+||+........ + ....+++||||||-.+...
T Consensus 100 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 100 EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 145 (556)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT
T ss_pred HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc
Confidence 4455679999999877543211 2 3456899999999888754
No 240
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=40.71 E-value=9 Score=38.07 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++.++|++|+|||| +++++.
T Consensus 4 ~v~lvG~nGaGKST--Lln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKST--LVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHh
Confidence 35789999999998 445443
No 241
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.61 E-value=10 Score=39.42 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHhcC-CeEEEEcccccch-hcccccCCCcEEEEecC
Q 038017 256 DFCFTK-ASLIFCTASSSYK-LHSVAMEQLKFLVIDEA 291 (610)
Q Consensus 256 ~~il~~-a~VI~~T~sss~~-l~~~~~~~fD~vIIDEA 291 (610)
..+... ++|+++|+..... +..+....+++||||||
T Consensus 111 ~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 111 KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp HHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred HHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 444444 9999999876533 22344558999999999
No 242
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=40.59 E-value=11 Score=37.74 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=27.2
Q ss_pred HhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCCh
Q 038017 258 CFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~E 296 (610)
.+..++|+++|........ ......+++||||||-.+..
T Consensus 120 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 120 ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 4458999999987654321 12345789999999976543
No 243
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=40.59 E-value=12 Score=36.78 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 26 Ge~~~liG~NGsGKST--Llk~l~ 47 (249)
T 2qi9_C 26 GEILHLVGPNGAGKST--LLARMA 47 (249)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 555543
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=40.58 E-value=10 Score=35.17 Aligned_cols=14 Identities=50% Similarity=0.572 Sum_probs=12.0
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.+.|+||+||||.
T Consensus 9 i~i~G~sGsGKTTl 22 (174)
T 1np6_A 9 LAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 56899999999874
No 245
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=40.42 E-value=10 Score=39.66 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 29 Ge~~~llGpnGsGKST--LLr~ia 50 (362)
T 2it1_A 29 GEFMALLGPSGSGKST--LLYTIA 50 (362)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCchHHH--HHHHHh
Confidence 3346789999999998 566654
No 246
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.41 E-value=9.6 Score=40.88 Aligned_cols=17 Identities=47% Similarity=0.724 Sum_probs=14.1
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.++++.|++||||||.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 35789999999999844
No 247
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.21 E-value=10 Score=38.32 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|++|+||||.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999854
No 248
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=40.20 E-value=33 Score=35.04 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=28.3
Q ss_pred HHHHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCC
Q 038017 254 LKDFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~ 295 (610)
........++|++||+...... ..+....+++||||||=.+.
T Consensus 152 ~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 152 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 3343447889999998664432 12334568999999998754
No 249
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=40.18 E-value=5.6 Score=44.21 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHH
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~ 541 (610)
+.+++.++..+.. ...+++.|..||||||.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH
Confidence 3456666554433 4468899999999998643
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.17 E-value=10 Score=34.37 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 7 I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999954
No 251
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=40.15 E-value=11 Score=42.08 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=43.2
Q ss_pred eeeChhhceEEEc---CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccc
Q 038017 510 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYI 586 (610)
Q Consensus 510 favTr~e~~vI~~---~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (610)
+.+++-|.++|.. +.++++.++.|+|||.+.++-++..-... .-.+ . .
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~-----~~~~----------------~--------~ 56 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKK-----KKAS----------------E--------P 56 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHH-----HHHT----------------C--------C
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhc-----cccC----------------C--------C
Confidence 4455555554432 56789999999999998877665421100 0000 0 0
Q ss_pred eeEEEEecCHHHHHHH-HHHhhh
Q 038017 587 LHQLFVTVSPKLCFAV-KQHISH 608 (610)
Q Consensus 587 l~q~fvt~s~~L~~~v-k~~~~~ 608 (610)
-+-|+|+....|+.++ .+.+.+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 2348888888899988 766543
No 252
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=40.10 E-value=10 Score=39.54 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 29 Ge~~~llGpnGsGKST--LLr~ia 50 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTT--TLLMLA 50 (359)
T ss_dssp TCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEEcCCCchHHH--HHHHHH
Confidence 3346789999999998 566654
No 253
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=39.91 E-value=10 Score=39.72 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 37 Ge~~~llGpnGsGKST--LLr~ia 58 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTT--TLRMIA 58 (372)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCChHHH--HHHHHH
Confidence 3446789999999998 566654
No 254
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=39.62 E-value=33 Score=34.99 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCChhH
Q 038017 256 DFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E~e 298 (610)
..+...++|++||+.....+ .......+++||||||-.+....
T Consensus 134 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 134 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 34557889999998764332 11234568999999998766543
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.62 E-value=11 Score=38.59 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..+.++|++|+|||| +++++..
T Consensus 171 g~~v~i~G~~GsGKTT--ll~~l~g 193 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTT--YIKSIME 193 (330)
T ss_dssp TCCEEEEESTTSCHHH--HHHHGGG
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4567899999999999 5666554
No 256
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.38 E-value=35 Score=35.85 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCCh
Q 038017 254 LKDFCFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 254 i~~~il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~E 296 (610)
....+.+.++|+++|+.....+. ......+++||+|||=.+..
T Consensus 172 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 172 QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTS
T ss_pred HHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhc
Confidence 34456678999999987654321 12345789999999987653
No 257
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=39.37 E-value=11 Score=40.35 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.7
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356889999999999743
No 258
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=39.19 E-value=9.9 Score=36.35 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=26.0
Q ss_pred hcCCeEEEEcccccchhc-----ccccCCCcEEEEecCCCCCh
Q 038017 259 FTKASLIFCTASSSYKLH-----SVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l~-----~~~~~~fD~vIIDEAsQ~~E 296 (610)
...++||++|+.....+. ......+++||||||-.+.+
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 457799999987643321 12344689999999976543
No 259
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=39.15 E-value=32 Score=37.63 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+++.++..++|||||.+.++-.+.. . .+-+++|....|+.|+
T Consensus 22 ~~~~~~~a~TGtGKT~~~l~p~l~~------------~--------------------------~~v~i~~pt~~l~~q~ 63 (551)
T 3crv_A 22 NFLVALNAPTGSGKTLFSLLVSLEV------------K--------------------------PKVLFVVRTHNEFYPI 63 (551)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH------------C--------------------------SEEEEEESSGGGHHHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC------------C--------------------------CeEEEEcCCHHHHHHH
Confidence 4567788999999999998877650 0 3448899999999999
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
.+.+.+|
T Consensus 64 ~~~~~~l 70 (551)
T 3crv_A 64 YRDLTKI 70 (551)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 8776654
No 260
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.12 E-value=11 Score=40.96 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.+++++|++|||||+. .|.+..
T Consensus 49 p~gvLL~GppGtGKT~L--araia~ 71 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLL--ARAVAG 71 (476)
T ss_dssp CSEEEEECCTTSSHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 45688999999999974 344443
No 261
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=39.08 E-value=18 Score=34.26 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=17.8
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.+.+.|++|+|||+-++.-+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 44578899999999987765443
No 262
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=38.91 E-value=7.8 Score=39.11 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 46 ~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp TCCEEEESCCCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457899999999999743
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=38.68 E-value=11 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 29 Ge~~~llGpsGsGKST--LLr~ia 50 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKST--LLRMIA 50 (381)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEEcCCCchHHH--HHHHHH
Confidence 3446789999999998 566654
No 264
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=38.53 E-value=11 Score=40.95 Aligned_cols=18 Identities=50% Similarity=0.850 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.++++.|++|||||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 456889999999999744
No 265
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=38.34 E-value=12 Score=36.57 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=15.3
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.+.+.|++|+|||| +.|++.
T Consensus 29 ~I~I~G~~GsGKST--l~k~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGT--LCKALA 48 (252)
T ss_dssp EEEEECCTTSSHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 36789999999998 445554
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.10 E-value=11 Score=35.14 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999964
No 267
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.05 E-value=12 Score=37.62 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|++|||||+.+
T Consensus 60 ~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 268
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.01 E-value=11 Score=38.31 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|++||||||.+
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=37.94 E-value=11 Score=35.10 Aligned_cols=15 Identities=47% Similarity=0.379 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 25 i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999854
No 270
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.87 E-value=11 Score=34.80 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 568999999999954
No 271
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=37.52 E-value=12 Score=39.58 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 47 Ge~~~llGpsGsGKST--LLr~ia 68 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKST--LLSAFL 68 (390)
T ss_dssp TCEEEEEESTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCChHHH--HHHHHh
Confidence 3447799999999999 456654
No 272
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.47 E-value=29 Score=35.12 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=26.5
Q ss_pred HhcCCeEEEEcccccchhc---ccccCCCcEEEEecCCCCC
Q 038017 258 CFTKASLIFCTASSSYKLH---SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~---~~~~~~fD~vIIDEAsQ~~ 295 (610)
.+..++|++||+....... ......+++||||||-.+.
T Consensus 135 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 135 GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 3457999999987654321 2234578999999997653
No 273
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=37.36 E-value=10 Score=36.65 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|+.|||||+.+
T Consensus 61 ili~GPPGtGKTt~a 75 (212)
T 1tue_A 61 LVFCGPANTGKSYFG 75 (212)
T ss_dssp EEEESCGGGCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999875
No 274
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.24 E-value=11 Score=34.14 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+.|.+|+||||. .+++.
T Consensus 8 i~l~G~~GsGKST~--~~~L~ 26 (179)
T 2pez_A 8 VWLTGLSGAGKTTV--SMALE 26 (179)
T ss_dssp EEEECCTTSSHHHH--HHHHH
T ss_pred EEEECCCCCCHHHH--HHHHH
Confidence 56889999999984 34444
No 275
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.24 E-value=11 Score=40.88 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=17.6
Q ss_pred cCCceEEEccCCCCchhHHHHHHHHH
Q 038017 522 FPRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 522 ~~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
.++.+++.|++|||||+ +.|-++.
T Consensus 242 pprGILLyGPPGTGKTl--LAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTL--CARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHH--HHHHHHH
T ss_pred CCCceEeeCCCCCcHHH--HHHHHHh
Confidence 36678999999999995 3444443
No 276
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=37.23 E-value=12 Score=33.38 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 5 I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 5 IFMVGARGCGMTTVG 19 (173)
T ss_dssp EEEESCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999954
No 277
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=37.20 E-value=11 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|+|+||+||||.+
T Consensus 93 vgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 93 IGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 568999999999954
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=37.20 E-value=12 Score=35.04 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999964
No 279
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.12 E-value=27 Score=41.65 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=40.4
Q ss_pred hhhceEEE---cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEE
Q 038017 514 DEQLEMIL---FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQL 590 (610)
Q Consensus 514 r~e~~vI~---~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~ 590 (610)
+-|...|- -++++++.++.|+|||. +.+-++.... . . | .+-|
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~-----~-------~----------------~------~~~l 103 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLA-----L-------K----------------G------KRCY 103 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHH-----T-------T----------------S------CCEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHh-----h-------c----------------C------CeEE
Confidence 44544432 36789999999999997 4443332210 0 0 0 3569
Q ss_pred EEecCHHHHHHHHHHhhh
Q 038017 591 FVTVSPKLCFAVKQHISH 608 (610)
Q Consensus 591 fvt~s~~L~~~vk~~~~~ 608 (610)
+++....||.|+.+.+.+
T Consensus 104 il~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 104 VIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp EEESCHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHH
Confidence 999999999999887764
No 280
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.95 E-value=12 Score=39.96 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
++.++++|++|||||. +.|-++.
T Consensus 216 prGvLLyGPPGTGKTl--LAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTL--LAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHH--HHHHHHH
T ss_pred CCCCceECCCCchHHH--HHHHHHH
Confidence 5668999999999996 3444443
No 281
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=36.91 E-value=18 Score=38.61 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhH
Q 038017 258 CFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e 298 (610)
....++|+++|..+...........+++||||||-.+....
T Consensus 201 ~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~ 241 (510)
T 2oca_A 201 YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS 241 (510)
T ss_dssp GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHH
T ss_pred cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCccc
Confidence 45679999999876544322233468999999999998654
No 282
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=36.80 E-value=38 Score=37.67 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=37.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-. ... .+ ..-+-|||+...-|+.++
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~l~-----~~~-----~~--------------------~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHHLK-----KFP-----QG--------------------QKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHH-----HSC-----TT--------------------CCCCEEEECSSHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHH-----hCc-----cC--------------------CCCeEEEEECCHHHHHHH
Confidence 567899999999999988876654211 000 00 002458999888899988
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 78 ~~~~~~ 83 (696)
T 2ykg_A 78 KSVFSK 83 (696)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 283
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=36.74 E-value=14 Score=39.08 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCeEEEEcccccchhcccccCCCcEEEEecCCCCChhH
Q 038017 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESE 298 (610)
Q Consensus 261 ~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e 298 (610)
.++|+++|..........-...|++||||||=.+....
T Consensus 171 ~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~ 208 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAES 208 (472)
T ss_dssp CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTT
T ss_pred cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChH
Confidence 47899999876544322112469999999998877543
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.73 E-value=12 Score=34.29 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 16 i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 568999999999954
No 285
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=36.69 E-value=12 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|.+|+||||.+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 568999999999954
No 286
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.61 E-value=12 Score=34.77 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=15.0
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+.+.|.+|+||||. .+++..
T Consensus 24 i~i~G~~GsGKSTl--~~~L~~ 43 (207)
T 2qt1_A 24 IGISGVTNSGKTTL--AKNLQK 43 (207)
T ss_dssp EEEEESTTSSHHHH--HHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHH
Confidence 56899999999984 445543
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=36.54 E-value=13 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 7 I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 7 IAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 568999999999954
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=36.44 E-value=12 Score=39.01 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=13.7
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+.++|++|+||||.+
T Consensus 125 ~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTL 140 (356)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999955
No 289
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=36.30 E-value=40 Score=34.52 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 256 DFCFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
..+-..++|+++|+.....+ .......+++||||||=.+..
T Consensus 150 ~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred HHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 34556789999998664432 123345689999999976543
No 290
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=36.29 E-value=13 Score=39.82 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHhcCCeEEEEcccccchhcc---c-ccCCCcEEEEecCCCCChh
Q 038017 256 DFCFTKASLIFCTASSSYKLHS---V-AMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~~---~-~~~~fD~vIIDEAsQ~~E~ 297 (610)
..+...++|++||+........ + ....+++||||||-.+...
T Consensus 97 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 97 QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT
T ss_pred HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc
Confidence 4456679999999877544211 1 2345899999999888754
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=36.18 E-value=13 Score=37.49 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 64 Ge~~~i~G~NGsGKST--Llk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTS--LLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 4457799999999998 455553
No 292
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.06 E-value=12 Score=37.92 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-+.++|++|+||||.+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3568999999999843
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=36.06 E-value=11 Score=39.19 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+.++|++|+||||.+
T Consensus 137 ~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTI 153 (372)
T ss_dssp EEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678999999999854
No 294
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=36.03 E-value=18 Score=36.92 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEcCCceEEEccCCCCchhHHHHH
Q 038017 518 EMILFPRSTFILGRSGTGKTTILTMK 543 (610)
Q Consensus 518 ~vI~~~~s~~vlGrSgtgktt~~~~k 543 (610)
.|.+.+..+++.|.||+||+|.++.-
T Consensus 142 ~v~~~g~gvli~G~sG~GKStlal~l 167 (312)
T 1knx_A 142 LLEVFGVGVLLTGRSGIGKSECALDL 167 (312)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHH
Confidence 45556778999999999999888663
No 295
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=35.91 E-value=13 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.7
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..++++|++||||||.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446789999999999853
No 296
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.79 E-value=13 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.666 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..++++|++|||||+. .|.+..
T Consensus 64 p~GvLL~GppGtGKTtL--araIa~ 86 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHL--ARAVAG 86 (499)
T ss_dssp CSEEEEECSSSSSHHHH--HHHHHH
T ss_pred CceEEEECCCCCCHHHH--HHHHHH
Confidence 34588999999999974 344443
No 297
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.61 E-value=15 Score=39.49 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=13.4
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
+.+++|++|||||+.+
T Consensus 203 ~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIA 218 (468)
T ss_dssp EEEEESCTTTTTHHHH
T ss_pred CeEEECCCCCCHHHHH
Confidence 4688999999999854
No 298
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=35.48 E-value=13 Score=33.61 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 6 I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 6 VFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999965
No 299
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=35.35 E-value=40 Score=38.59 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.+.++-++..-... . . ....+-|+|+....|+.++
T Consensus 263 ~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------~----~--------------------~~~~~~Lvl~Pt~~L~~Q~ 312 (797)
T 4a2q_A 263 GKNALICAPTGSGKTFVSILICEHHFQNM------P----A--------------------GRKAKVVFLATKVPVYEQQ 312 (797)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTC------C----S--------------------SCCCCEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhc------c----c--------------------cCCCeEEEEeCCHHHHHHH
Confidence 45688999999999998877665431100 0 0 0013569999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 313 ~~~~~~ 318 (797)
T 4a2q_A 313 KNVFKH 318 (797)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 300
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=35.24 E-value=9.1 Score=39.74 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.-+.++|+||+|||| ++|++.
T Consensus 26 Ge~~~llGpnGsGKST--LLr~ia 47 (348)
T 3d31_A 26 GEYFVILGPTGAGKTL--FLELIA 47 (348)
T ss_dssp TCEEEEECCCTHHHHH--HHHHHH
T ss_pred CCEEEEECCCCccHHH--HHHHHH
Confidence 3446789999999998 566654
No 301
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=35.24 E-value=15 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|.+|+||||.+
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999954
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=35.13 E-value=14 Score=33.77 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999954
No 303
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=35.08 E-value=14 Score=37.53 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=26.2
Q ss_pred hcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 259 FTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
...++|++||+...... .......+++||||||=.+..
T Consensus 119 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 34789999998764432 122345789999999976543
No 304
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=34.98 E-value=14 Score=34.17 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 13 I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999954
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=34.88 E-value=19 Score=36.06 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.4
Q ss_pred eEEEccCCCCchhHH--HHHHHHH
Q 038017 526 TFILGRSGTGKTTIL--TMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~--~~kl~~~ 547 (610)
+.|.|.||+||||.+ +.+++..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 457899999999975 5555543
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=34.82 E-value=14 Score=33.84 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 15 I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 668999999999964
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.75 E-value=14 Score=35.69 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|++|+||||.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 557899999999954
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=34.67 E-value=16 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.6
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+++.|.+|+||||.+
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678999999999964
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=34.60 E-value=15 Score=33.82 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=15.1
Q ss_pred eEEEccCCCCchhHHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+++.|.+|+||||.+ +++.+
T Consensus 7 I~l~G~~GsGKsT~~--~~L~~ 26 (204)
T 2v54_A 7 IVFEGLDKSGKTTQC--MNIME 26 (204)
T ss_dssp EEEECCTTSSHHHHH--HHHHH
T ss_pred EEEEcCCCCCHHHHH--HHHHH
Confidence 578999999999954 44443
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=34.58 E-value=15 Score=33.53 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 12 I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 12 IFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.56 E-value=14 Score=34.15 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=13.8
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.+.|.||+||||. +.+|.
T Consensus 7 i~i~G~sGsGKTTl-~~~L~ 25 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWV 25 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 56789999999874 33443
No 312
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.45 E-value=11 Score=36.68 Aligned_cols=15 Identities=53% Similarity=0.760 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 35 i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEESCGGGTTHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999953
No 313
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=34.44 E-value=14 Score=40.28 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..+.++|++|+||||.+
T Consensus 260 g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TCCEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445789999999999964
No 314
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=34.40 E-value=7 Score=39.30 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred hcCCeEEEEcccccchhc----ccccCCCcEEEEecCCCCC
Q 038017 259 FTKASLIFCTASSSYKLH----SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l~----~~~~~~fD~vIIDEAsQ~~ 295 (610)
...++||+||+.....+. .+....+++||||||=.+.
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHh
Confidence 456789999987643321 2233468999999996544
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.29 E-value=14 Score=33.37 Aligned_cols=15 Identities=47% Similarity=0.800 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 9 I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=34.21 E-value=13 Score=38.15 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=12.6
Q ss_pred ceEEEccCCCCchhH
Q 038017 525 STFILGRSGTGKTTI 539 (610)
Q Consensus 525 s~~vlGrSgtgktt~ 539 (610)
-+.++|++|+||||.
T Consensus 131 vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 131 VIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356899999999984
No 317
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=34.21 E-value=17 Score=38.33 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.0
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
+..+.++|++|+||||.+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4457899999999999776
No 318
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.03 E-value=14 Score=40.08 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=14.3
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
..+++.|++|||||+.+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999999854
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=33.99 E-value=15 Score=38.51 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 54 Gei~~IiGpnGaGKST--Llr~i~ 75 (366)
T 3tui_C 54 GQIYGVIGASGAGKST--LIRCVN 75 (366)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEEcCCCchHHH--HHHHHh
Confidence 3447799999999998 466654
No 320
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=33.86 E-value=15 Score=33.29 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
..+.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999954
No 321
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=33.78 E-value=14 Score=41.29 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHhcCCeEEEEcccccchhc---------ccccCCCcEEEEecCCCCC
Q 038017 256 DFCFTKASLIFCTASSSYKLH---------SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~---------~~~~~~fD~vIIDEAsQ~~ 295 (610)
..+...++||+||+....... .+....+++||||||=.+.
T Consensus 101 ~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~ 149 (699)
T 4gl2_A 101 PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 149 (699)
T ss_dssp HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCB
T ss_pred HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccC
Confidence 344578999999987654321 1234568999999998764
No 322
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=33.62 E-value=15 Score=32.57 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEESCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999853
No 323
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=33.52 E-value=10 Score=38.66 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| ++|++.
T Consensus 80 Ge~vaivG~sGsGKST--Ll~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKST--ILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHH--HHHHHT
T ss_pred CCEEEEECCCCchHHH--HHHHHH
Confidence 4457899999999998 446654
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=33.42 E-value=15 Score=33.89 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 18 I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999965
No 325
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=33.41 E-value=15 Score=33.12 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=10.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+++.|.+|+||||.+ +.+.
T Consensus 8 I~l~G~~GsGKST~a--~~La 26 (183)
T 2vli_A 8 IWINGPFGVGKTHTA--HTLH 26 (183)
T ss_dssp EEEECCC----CHHH--HHHH
T ss_pred EEEECCCCCCHHHHH--HHHH
Confidence 568999999999954 4444
No 326
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=33.39 E-value=46 Score=34.24 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=36.3
Q ss_pred ceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAVKQ 604 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~vk~ 604 (610)
+.++.++.|+|||..++.-+...-. . . .-+-|+|+.+..|+.+..+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~---------~---~----------------------~~~~liv~P~~~L~~q~~~ 70 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLT---------K---Y----------------------GGKVLMLAPTKPLVLQHAE 70 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH---------H---S----------------------CSCEEEECSSHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHh---------c---C----------------------CCeEEEEECCHHHHHHHHH
Confidence 6788999999999988877654211 0 0 0245899999899998887
Q ss_pred Hhhh
Q 038017 605 HISH 608 (610)
Q Consensus 605 ~~~~ 608 (610)
.+.+
T Consensus 71 ~~~~ 74 (494)
T 1wp9_A 71 SFRR 74 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=33.26 E-value=7.7 Score=35.86 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.++|+||+||||.+
T Consensus 5 v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEESCHHHHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999853
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=33.21 E-value=16 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.4
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|.+|+||||..
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999954
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.92 E-value=15 Score=34.78 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 10 I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999964
No 330
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=32.85 E-value=21 Score=40.41 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=28.2
Q ss_pred HhcCCeEEEEcccccchhcccccCCCcEEEEecCCCCChhHH
Q 038017 258 CFTKASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQLKESES 299 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~~E~e~ 299 (610)
.-..++|+++|+.-......+....+++|||||| ++.....
T Consensus 294 ~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEA-H~l~~~~ 334 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDEC-HSTDSTT 334 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTT-TCCSHHH
T ss_pred ccCCCCEEEECcHHHHhCCCcccCcccEEEEccc-hhcCccH
Confidence 3457899999986543222334456999999999 7665543
No 331
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=32.82 E-value=15 Score=40.02 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=14.5
Q ss_pred CCceEEEccCCCCchhH
Q 038017 523 PRSTFILGRSGTGKTTI 539 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~ 539 (610)
+.+++++|++|||||+.
T Consensus 41 ~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLI 57 (500)
T ss_dssp TCEEEEECCSSSSHHHH
T ss_pred CCeeEeecCchHHHHHH
Confidence 45789999999999973
No 332
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=32.69 E-value=18 Score=37.26 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.++|++|+||||-+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577999999999996654
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=32.60 E-value=16 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 12 I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQS 26 (215)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999954
No 334
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=32.44 E-value=16 Score=36.75 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=14.1
Q ss_pred CceEEEccCCCCchhHHH
Q 038017 524 RSTFILGRSGTGKTTILT 541 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~ 541 (610)
..+.++|++|+||||.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 346678999999999653
No 335
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=32.34 E-value=23 Score=36.18 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred eEEEcCCceEEEccCCCCchhHHHHHH
Q 038017 518 EMILFPRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 518 ~vI~~~~s~~vlGrSgtgktt~~~~kl 544 (610)
.|.+.+..+.+.|.||+||+|.++.-+
T Consensus 139 ~v~~~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 139 LVDVYGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 344467789999999999988776544
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=32.18 E-value=16 Score=32.99 Aligned_cols=14 Identities=50% Similarity=0.956 Sum_probs=12.0
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|.||||.
T Consensus 5 v~ivG~~gvGKStL 18 (184)
T 2zej_A 5 LMIVGNTGSGKTTL 18 (184)
T ss_dssp EEEESCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999963
No 337
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=32.09 E-value=44 Score=36.41 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
++..++..++|||||.+.++-.+.. . .+-+++|...-|+.|+
T Consensus 26 ~~~~~~~a~TGtGKT~~~l~~~~~~------------~--------------------------~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 26 GKTLLLNAKPGLGKTVFVEVLGMQL------------K--------------------------KKVLIFTRTHSQLDSI 67 (540)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHH------------T--------------------------CEEEEEESCHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhC------------C--------------------------CcEEEEcCCHHHHHHH
Confidence 4567888999999998877665321 0 2447888888888887
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 68 ~~~~~~ 73 (540)
T 2vl7_A 68 YKNAKL 73 (540)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 765544
No 338
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.93 E-value=17 Score=40.42 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.2
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+..++++|++||||||.+
T Consensus 60 g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 457899999999999854
No 339
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=31.64 E-value=17 Score=33.38 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=11.8
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|++|+||||
T Consensus 8 v~lvG~~g~GKST 20 (199)
T 2f9l_A 8 VVLIGDSGVGKSN 20 (199)
T ss_dssp EEEESSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 5789999999997
No 340
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.55 E-value=17 Score=36.83 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|++|||||+.+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999865
No 341
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=31.52 E-value=9.2 Score=39.74 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|+||+|||| ++|++.
T Consensus 31 Ge~~~llGpnGsGKST--LLr~ia 52 (353)
T 1oxx_K 31 GERFGILGPSGAGKTT--FMRIIA 52 (353)
T ss_dssp TCEEEEECSCHHHHHH--HHHHHH
T ss_pred CCEEEEECCCCCcHHH--HHHHHh
Confidence 3346789999999998 566654
No 342
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=31.49 E-value=18 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.7
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++-+++.|++|+|||+-++.-.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3457889999999998665543
No 343
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=31.34 E-value=17 Score=33.30 Aligned_cols=14 Identities=36% Similarity=0.843 Sum_probs=12.2
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+||||.
T Consensus 32 v~lvG~~g~GKSTL 45 (191)
T 1oix_A 32 VVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 57899999999973
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=31.26 E-value=17 Score=33.55 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 23 I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQA 37 (201)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999954
No 345
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=31.12 E-value=35 Score=36.74 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.6
Q ss_pred HhcCCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 258 CFTKASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 258 il~~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
....++||++|+...... .......+++||||||=.+..
T Consensus 232 ~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 232 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp -CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 344789999998764432 122345789999999876543
No 346
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=31.11 E-value=18 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.7
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|++|.||||
T Consensus 6 v~lvG~~gvGKSt 18 (165)
T 2wji_A 6 IALIGNPNVGKST 18 (165)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5789999999997
No 347
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.09 E-value=61 Score=36.00 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=43.3
Q ss_pred cCCCcccChhhhhhcCcchhHHHHHHHHHhhhhhhcCCCceEEEEeeccCCCCceeEEEEecccccCCCCCCCCCccCCC
Q 038017 3 QIPLSFQSVSQYFESFVFPLLEETRAQLFSSMEKVSKAPFAEVVALEDSKPYGAILYDVKVDCWRNRFSNPGKEPYKTLP 82 (610)
Q Consensus 3 ~ip~~F~s~~~Y~~sf~~pL~eEt~~~l~Ssl~~~~~ap~~~i~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~y~p~~ 82 (610)
+|+.+|.|+.+|.+.|.+.|.-|-.+|... -+.... .-..+.+ ... -.+..++.+.+.. . .......+
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~-~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~--~------~~~~~~~~ 68 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKL-KESQTQ-DNITVRW-DLG-LNKKRIAYFTLPK--T------DSDMRLMQ 68 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTCE-EEECEEE-EEC-TTSCEEEEEECC---------------CCT
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHH-Hhhhhc-cCceEEe-eec-CCCceEEEEEecc--c------ccCCcCCC
Confidence 478999999999999999999888777432 111111 1112221 111 1233333444432 1 11246689
Q ss_pred CCEEEeccCCCC
Q 038017 83 GDILVLADAKPE 94 (610)
Q Consensus 83 gDii~lt~~kP~ 94 (610)
||++.|+...|.
T Consensus 69 Gd~v~l~~~~~~ 80 (624)
T 2gk6_A 69 GDEICLRYKGDL 80 (624)
T ss_dssp TCEEEEEECSSS
T ss_pred CCEEEEEECCCC
Confidence 999999966553
No 348
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.02 E-value=15 Score=42.50 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
+..++++|++||||||. .|.+..
T Consensus 238 ~~~vLL~Gp~GtGKTtL--arala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI--ARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHH--HHHHHH
T ss_pred CCeEEEECcCCCCHHHH--HHHHHH
Confidence 45688999999999974 444443
No 349
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.00 E-value=24 Score=33.36 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.5
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
.++.|..|||||+.+...+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999988665443
No 350
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.72 E-value=16 Score=37.98 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-+.++|++|+||||.+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3568999999999943
No 351
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=30.66 E-value=23 Score=37.36 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=19.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++++++.|+.|+|||.+++.-++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~ 25 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVR 25 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 356889999999999998777663
No 352
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=30.51 E-value=10 Score=38.97 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=24.6
Q ss_pred hcCCeEEEEcccccchh----cccccCCCcEEEEecCCCC
Q 038017 259 FTKASLIFCTASSSYKL----HSVAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l----~~~~~~~fD~vIIDEAsQ~ 294 (610)
...++|++||+...... ..+....+++||||||=.+
T Consensus 141 ~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 141 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 34678999998765432 1223346899999998654
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=30.40 E-value=9.1 Score=35.61 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.4
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 467899999999844
No 354
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.28 E-value=18 Score=33.06 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 11 I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 11 IGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999964
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=30.25 E-value=19 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=14.6
Q ss_pred CCceEEEccCCCCchhHH
Q 038017 523 PRSTFILGRSGTGKTTIL 540 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~ 540 (610)
+.+++++|++|||||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 346788999999999853
No 356
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=30.12 E-value=42 Score=37.91 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
++++++.|+.|+|||+.+.+-+++
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHH
T ss_pred CCeEEEEeCCchhHHHHHHHHHHH
Confidence 456889999999999988876654
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.05 E-value=16 Score=36.70 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.++|++|+||||.+
T Consensus 83 igI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567999999999954
No 358
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=29.96 E-value=23 Score=36.58 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=17.0
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.+.|++|+||||.++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457889999999999766544
No 359
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=29.95 E-value=17 Score=36.88 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=25.9
Q ss_pred CCeEEEEcccccchh---cccccCCCcEEEEecCCCCCh
Q 038017 261 KASLIFCTASSSYKL---HSVAMEQLKFLVIDEAAQLKE 296 (610)
Q Consensus 261 ~a~VI~~T~sss~~l---~~~~~~~fD~vIIDEAsQ~~E 296 (610)
.++|+++|+.....+ .......+++||||||=.+..
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 479999998765432 122345789999999987765
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=29.90 E-value=23 Score=35.86 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.+.|++|+|||+.++.-.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4457899999999999776544
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=29.81 E-value=18 Score=36.99 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.++|+||+||||.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999964
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.79 E-value=19 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 7 I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 7 MVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999954
No 363
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.79 E-value=20 Score=35.29 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.1
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|++|||||+.+
T Consensus 41 ~ll~G~~G~GKt~la 55 (319)
T 2chq_A 41 LLFSGPPGTGKTATA 55 (319)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECcCCcCHHHHH
Confidence 788999999999754
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.63 E-value=21 Score=40.77 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
+.+++|++|||||+.+
T Consensus 203 ~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIA 218 (758)
T ss_dssp EEEEESCTTTTTHHHH
T ss_pred CeEEECCCCCCHHHHH
Confidence 4788999999999854
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=29.57 E-value=19 Score=34.82 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 32 I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999854
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=29.55 E-value=19 Score=35.18 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 7 Ivl~G~pGSGKSTla 21 (260)
T 3a4m_A 7 IILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 568999999999954
No 367
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=29.37 E-value=19 Score=33.08 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=11.9
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|++|+||||
T Consensus 29 v~lvG~~g~GKST 41 (210)
T 1pui_A 29 VAFAGRSNAGKSS 41 (210)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999997
No 368
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=29.22 E-value=14 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.9
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
..++|+||+|||| ++|++.
T Consensus 173 ~~IvG~nGsGKST--Llk~L~ 191 (365)
T 1lw7_A 173 VAILGGESSGKSV--LVNKLA 191 (365)
T ss_dssp EEEECCTTSHHHH--HHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHH
Confidence 6789999999998 455544
No 369
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=29.20 E-value=57 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred cceeeChhhceEEEc-CCceEEEccCCCCchh
Q 038017 508 LPFEVTDEQLEMILF-PRSTFILGRSGTGKTT 538 (610)
Q Consensus 508 lnfavTr~e~~vI~~-~~s~~vlGrSgtgktt 538 (610)
+|+....+.-.-++- ++.++++|++|+||||
T Consensus 93 lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt 124 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT 124 (773)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH
T ss_pred CChHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 555444444332222 4568999999999999
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=29.12 E-value=20 Score=30.92 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=12.2
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
++++|++|+||||.
T Consensus 6 i~v~G~~~~GKssl 19 (166)
T 2ce2_X 6 LVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999974
No 371
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=29.08 E-value=19 Score=35.56 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|++|||||+.+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 3788999999999864
No 372
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=28.99 E-value=20 Score=39.39 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=13.9
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
+..++.|.|||||||..
T Consensus 242 ~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEEccCCCCHHHHh
Confidence 45778999999999944
No 373
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=28.98 E-value=23 Score=38.83 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|.-+.++|++|+|||| ++|++.
T Consensus 47 Ge~~~LvG~NGaGKST--Llk~l~ 68 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKST--AVKILA 68 (538)
T ss_dssp TSEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 566654
No 374
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=28.89 E-value=19 Score=40.25 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHhcCCeEEEEcccccchhcc---c-ccCCCcEEEEecCCCCChh
Q 038017 256 DFCFTKASLIFCTASSSYKLHS---V-AMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 256 ~~il~~a~VI~~T~sss~~l~~---~-~~~~fD~vIIDEAsQ~~E~ 297 (610)
..+...++||+||+........ + ....+++||||||=.+...
T Consensus 106 ~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 106 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 3455689999999877543211 1 3346899999999987643
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=28.87 E-value=20 Score=33.53 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 7 I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 7 VALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999943
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=28.83 E-value=20 Score=33.61 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999854
No 377
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=28.62 E-value=25 Score=39.26 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=40.2
Q ss_pred CCeEEEEcccccchh-cccccCCCcEEEEecCCCCChhHHH--hhc-cCcCcceEEEeCCCCcCC
Q 038017 261 KASLIFCTASSSYKL-HSVAMEQLKFLVIDEAAQLKESESA--IPL-QLPCIQHAILVGDECQLP 321 (610)
Q Consensus 261 ~a~VI~~T~sss~~l-~~~~~~~fD~vIIDEAsQ~~E~e~l--ipL-~~~~~k~~ILvGD~~QLp 321 (610)
.++|+++|....... ..+....|++||+|||-.+.-+.+- -.+ .+....+++|-|=|-|-.
T Consensus 170 ~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 170 PTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQND 234 (644)
T ss_dssp SCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGG
T ss_pred CCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCC
Confidence 478999997664432 2344568999999999998644321 111 122457899999887764
No 378
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=28.61 E-value=20 Score=37.48 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=14.9
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.+.++|++|+||||. .+++.
T Consensus 171 ~i~l~G~~GsGKSTl--~~~l~ 190 (377)
T 1svm_A 171 YWLFKGPIDSGKTTL--AAALL 190 (377)
T ss_dssp EEEEECSTTSSHHHH--HHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHH
Confidence 467899999999984 44443
No 379
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=28.53 E-value=21 Score=36.04 Aligned_cols=14 Identities=50% Similarity=0.764 Sum_probs=12.3
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+++.|.+|+||||.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999984
No 380
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=28.38 E-value=19 Score=38.29 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.4
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+.++|++|+||||.+
T Consensus 169 ii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTL 184 (418)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678999999999954
No 381
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.36 E-value=42 Score=37.12 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=19.3
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+++++++++.|+|||.|..+-.+
T Consensus 59 g~d~lv~~pTGsGKTl~~~lpal 81 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCYQLPAL 81 (591)
T ss_dssp TCCEEEECCTTSCTTHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHH
Confidence 66799999999999998766554
No 382
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=28.36 E-value=21 Score=34.77 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHH
Q 038017 526 TFILGRSGTGKTTILTM 542 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~ 542 (610)
+++.|.+|+||||.++-
T Consensus 9 I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 57789999999998654
No 383
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=28.16 E-value=20 Score=34.24 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=14.5
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.+.|.+|+|||| +++++.
T Consensus 23 i~i~G~~GsGKST--l~~~L~ 41 (230)
T 2vp4_A 23 VLIEGNIGSGKTT--YLNHFE 41 (230)
T ss_dssp EEEECSTTSCHHH--HHHTTG
T ss_pred EEEECCCCCCHHH--HHHHHH
Confidence 4578999999999 445543
No 384
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=27.99 E-value=22 Score=30.95 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|++|+||||. +.++.
T Consensus 8 i~v~G~~~~GKssl-~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSM-IQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECcCCCCHHHH-HHHHH
Confidence 57899999999973 33443
No 385
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.92 E-value=19 Score=39.31 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-+.++|.+|+||||.+
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 3568999999999853
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=27.73 E-value=22 Score=38.24 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=17.7
Q ss_pred CCceEEEccCCCCchhHHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQN 547 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~ 547 (610)
|.-+.|+|++|+|||| ++|++..
T Consensus 138 Ge~v~IvGpnGsGKST--Llr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTS--LSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHhC
Confidence 4457899999999998 5566543
No 387
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=27.39 E-value=21 Score=36.50 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=16.1
Q ss_pred CceEEEccCCCCchhHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl 544 (610)
+-+.+.|++|+|||+.++.-.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999765433
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=27.35 E-value=22 Score=33.66 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|.+|+||||.+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999954
No 389
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=27.21 E-value=22 Score=38.96 Aligned_cols=17 Identities=53% Similarity=0.696 Sum_probs=13.8
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
+..+++|.|||||||..
T Consensus 214 ~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 214 DVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEEccCCcchhhhh
Confidence 35677899999999853
No 390
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=26.98 E-value=26 Score=36.15 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHh
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
|.-..++|++|+||||. ++++...
T Consensus 71 Gq~~gIiG~nGaGKTTL--l~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTL--LGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHHH--HHHHhcC
Confidence 45577999999999995 6666543
No 391
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=26.95 E-value=39 Score=38.69 Aligned_cols=43 Identities=9% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHhcCCeEEEEcccccchhcc---c-ccCCCcEEEEecCCCCChh
Q 038017 255 KDFCFTKASLIFCTASSSYKLHS---V-AMEQLKFLVIDEAAQLKES 297 (610)
Q Consensus 255 ~~~il~~a~VI~~T~sss~~l~~---~-~~~~fD~vIIDEAsQ~~E~ 297 (610)
...+...++||+||+........ + ....+++||||||=.+...
T Consensus 340 ~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 340 VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred HHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 34566789999999876543211 1 2335799999999877754
No 392
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=26.94 E-value=24 Score=37.62 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++-+++.|++|+||||-++.-.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3347789999999998665433
No 393
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=26.62 E-value=29 Score=33.43 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=16.8
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
-.++.|..|+||||.++..+..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999987766543
No 394
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=26.62 E-value=24 Score=30.50 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=15.0
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|.+|+|||| ++.++..
T Consensus 4 i~v~G~~~~GKSs-li~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSS-LFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHH-HHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHhC
Confidence 5789999999996 3445543
No 395
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.51 E-value=24 Score=33.90 Aligned_cols=15 Identities=47% Similarity=0.787 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|+.|+||+|-+
T Consensus 32 I~llGpPGsGKgTqa 46 (217)
T 3umf_A 32 IFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEECCTTCCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567999999999965
No 396
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=26.49 E-value=25 Score=35.28 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=17.3
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
++.+.+.|++|+|||+.++.-..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 33477899999999987765443
No 397
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=26.49 E-value=27 Score=38.81 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=14.9
Q ss_pred CCceEEEccCCCCchhHHH
Q 038017 523 PRSTFILGRSGTGKTTILT 541 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~ 541 (610)
++.+++.|..||||||.+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3457889999999997643
No 398
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.38 E-value=14 Score=39.15 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=24.2
Q ss_pred cCCeEEEEcccccchhc----ccccCCCcEEEEecCCCC
Q 038017 260 TKASLIFCTASSSYKLH----SVAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 260 ~~a~VI~~T~sss~~l~----~~~~~~fD~vIIDEAsQ~ 294 (610)
..++||++|+.....+. .+....+++||||||=.+
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 35689999987754321 233356899999999754
No 399
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=26.36 E-value=1e+02 Score=38.71 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.+++++.+.|+|||.++.+-+++.-..+ ... . |.....-.+-|||+.---||+|+
T Consensus 95 ~~N~lv~APTGsGKTlva~l~il~~l~~~-~~~-------~----------------~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 95 DENLLLCAPTGAGKTNVALMCMLREIGKH-INM-------D----------------GTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp CCCEEEECCTTSCCHHHHHHHHHHHHGGG-CCT-------T----------------SSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCcEEEEeCCcchHHHHHHHHHHHHHHhh-ccc-------c----------------ccccCCCCEEEEECCHHHHHHHH
Confidence 45789999999999999988887532111 000 0 00011115679999999999999
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 151 ~~~l~~ 156 (1724)
T 4f92_B 151 VGSFGK 156 (1724)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 400
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=26.33 E-value=24 Score=32.86 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.+|.
T Consensus 33 i~i~G~~g~GKTTl-~~~l~ 51 (221)
T 2wsm_A 33 VNIMGAIGSGKTLL-IERTI 51 (221)
T ss_dssp EEEEECTTSCHHHH-HHHHH
T ss_pred EEEEcCCCCCHHHH-HHHHH
Confidence 56789999999974 34444
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=26.26 E-value=24 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHH
Q 038017 525 STFILGRSGTGKTTILTMK 543 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~k 543 (610)
-.+++|+.|+||||.+-.=
T Consensus 25 ~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4678999999999975443
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=26.22 E-value=23 Score=34.92 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.9
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+++.|.+|+||||.+
T Consensus 5 I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999954
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.22 E-value=24 Score=33.50 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.+++|+.|+||+|-+
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999865
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.09 E-value=24 Score=33.62 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 19 I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQA 33 (233)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999854
No 405
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=25.98 E-value=25 Score=31.53 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.1
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|.||||.
T Consensus 10 i~lvG~~gvGKStL 23 (188)
T 2wjg_A 10 IALIGNPNVGKSTI 23 (188)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999973
No 406
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=25.80 E-value=24 Score=32.93 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|.+|+||||. +.++..
T Consensus 41 i~ivG~~gvGKTtl-~~~l~~ 60 (226)
T 2hf9_A 41 FDFMGAIGSGKTLL-IEKLID 60 (226)
T ss_dssp EEEEESTTSSHHHH-HHHHHH
T ss_pred EEEEcCCCCCHHHH-HHHHHH
Confidence 56789999999864 445543
No 407
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=25.78 E-value=25 Score=37.28 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.1
Q ss_pred CceEEEccCCCCchhHHHHHH
Q 038017 524 RSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~kl 544 (610)
+-+++.|++|+|||+-++.-.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia 221 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIA 221 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 347789999999998665433
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=25.77 E-value=24 Score=34.30 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.3
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+.+.|.+|+||||.+
T Consensus 11 ~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVS 26 (233)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999854
No 409
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=25.68 E-value=27 Score=38.64 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| ++|++.
T Consensus 370 G~~~~ivG~sGsGKST--Ll~~l~ 391 (595)
T 2yl4_A 370 GSVTALVGPSGSGKST--VLSLLL 391 (595)
T ss_dssp TCEEEEECCTTSSSTH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 455554
No 410
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.65 E-value=24 Score=34.74 Aligned_cols=15 Identities=47% Similarity=0.632 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|++|+|||+.+
T Consensus 45 ~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV 59 (323)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 788999999999854
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=25.64 E-value=25 Score=30.61 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 5 i~~vG~~~~GKSsl-i~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSAL-ARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHH-HHHHC
T ss_pred EEEECCCCCCHHHH-HHHHc
Confidence 57899999999963 34443
No 412
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=25.60 E-value=25 Score=42.23 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=17.9
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
.+|+|.+|||||++++.|.-
T Consensus 4 ~lV~agAGSGKT~~l~~ri~ 23 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQ 23 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHH
Confidence 47899999999999998884
No 413
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=25.50 E-value=26 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.768 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 7 i~v~G~~~~GKssl-~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSAL-TLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57899999999974 44444
No 414
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=25.49 E-value=18 Score=37.18 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=12.8
Q ss_pred ceEE--EccCCCCchhHH
Q 038017 525 STFI--LGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~v--lGrSgtgktt~~ 540 (610)
.+++ .|++|+|||+.+
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 3566 799999999854
No 415
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=25.40 E-value=22 Score=35.70 Aligned_cols=14 Identities=43% Similarity=0.864 Sum_probs=12.1
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+||||.
T Consensus 21 I~lvG~nG~GKSTL 34 (301)
T 2qnr_A 21 LMVVGESGLGKSTL 34 (301)
T ss_dssp EEEEEETTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 37899999999984
No 416
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=25.35 E-value=25 Score=31.46 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.7
Q ss_pred eEEEccCCCCchh
Q 038017 526 TFILGRSGTGKTT 538 (610)
Q Consensus 526 ~~vlGrSgtgktt 538 (610)
+.++|++|+||||
T Consensus 7 i~ivG~~g~GKSt 19 (172)
T 2gj8_A 7 VVIAGRPNAGKSS 19 (172)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5789999999996
No 417
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=25.33 E-value=23 Score=35.91 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.0
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
+.++|.+|+||||.+.
T Consensus 107 i~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCChHHHHHH
Confidence 5578999999998653
No 418
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=25.32 E-value=26 Score=30.25 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||- +.++.
T Consensus 6 i~v~G~~~~GKSsl-i~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSAL-TVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 67899999999964 34444
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=25.30 E-value=25 Score=33.07 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
++++|.+|+||||.+
T Consensus 8 I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 8 LILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999954
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=25.26 E-value=25 Score=32.19 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.6
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 5 i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 5 VTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999954
No 421
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=25.19 E-value=23 Score=35.38 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=11.3
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
.++.|++|||||+.+
T Consensus 51 ~L~~G~~G~GKT~la 65 (324)
T 3u61_B 51 ILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEECSSTTSSHHHHH
T ss_pred EEeeCcCCCCHHHHH
Confidence 455577999999854
No 422
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=25.15 E-value=29 Score=37.05 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||| |++++
T Consensus 45 vaLvG~nGaGKST--Lln~L 62 (427)
T 2qag_B 45 ILCVGETGLGKST--LMDTL 62 (427)
T ss_dssp EEEECSTTSSSHH--HHHHH
T ss_pred EEEECCCCCCHHH--HHHHH
Confidence 5689999999998 34444
No 423
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=24.97 E-value=27 Score=30.35 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=14.8
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||+ ++.++..
T Consensus 3 i~~~G~~~~GKss-l~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTT-ILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHH-HHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHc
Confidence 5789999999997 3444543
No 424
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=24.95 E-value=26 Score=31.45 Aligned_cols=19 Identities=37% Similarity=0.774 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|++|+|||| ++.++.
T Consensus 24 i~vvG~~~~GKSs-li~~l~ 42 (190)
T 3con_A 24 LVVVGAGGVGKSA-LTIQLI 42 (190)
T ss_dssp EEEECSTTSSHHH-HHHHHH
T ss_pred EEEECcCCCCHHH-HHHHHH
Confidence 6789999999996 344444
No 425
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=24.95 E-value=27 Score=30.53 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=13.8
Q ss_pred eEEEccCCCCchhHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl 544 (610)
+.++|++|+|||| ++.++
T Consensus 5 i~ivG~~~~GKSs-li~~l 22 (169)
T 3q85_A 5 VMLVGESGVGKST-LAGTF 22 (169)
T ss_dssp EEEECSTTSSHHH-HHHHH
T ss_pred EEEECCCCCCHHH-HHHHH
Confidence 5789999999986 34444
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=24.93 E-value=27 Score=36.13 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=13.6
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
++|+|++|+|||+...
T Consensus 43 IvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998654
No 427
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.88 E-value=27 Score=30.33 Aligned_cols=19 Identities=26% Similarity=0.677 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 6 i~v~G~~~~GKssl-i~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSI-VLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 67899999999973 44444
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=24.86 E-value=25 Score=34.79 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.7
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.+.|.+|+||||.+
T Consensus 78 I~I~G~~GSGKSTva 92 (281)
T 2f6r_A 78 LGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999965
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=24.81 E-value=32 Score=37.32 Aligned_cols=20 Identities=50% Similarity=0.614 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
++.+.++|++|+||||-+..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45578999999999996554
No 430
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=24.79 E-value=90 Score=39.25 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=44.6
Q ss_pred eChhhceEEE----cCCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccce
Q 038017 512 VTDEQLEMIL----FPRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYIL 587 (610)
Q Consensus 512 vTr~e~~vI~----~~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 587 (610)
.++-|.+++- -++++++.++.|+|||.++.+-+++..... . | -
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-----------~----------------~------~ 973 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-----------S----------------E------G 973 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-----------T----------------T------C
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-----------C----------------C------C
Confidence 4555555443 256799999999999999988887643210 0 0 2
Q ss_pred eEEEEecCHHHHHHHHHHhh
Q 038017 588 HQLFVTVSPKLCFAVKQHIS 607 (610)
Q Consensus 588 ~q~fvt~s~~L~~~vk~~~~ 607 (610)
+-|||+.-.-||+|+-+.+.
T Consensus 974 kavyi~P~raLa~q~~~~~~ 993 (1724)
T 4f92_B 974 RCVYITPMEALAEQVYMDWY 993 (1724)
T ss_dssp CEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEcChHHHHHHHHHHHH
Confidence 45999999999999877664
No 431
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.71 E-value=27 Score=31.50 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=15.1
Q ss_pred ceEEEccCCCCchhHHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~~ 546 (610)
.+.++|.+|+||||. +.++..
T Consensus 50 ~i~vvG~~g~GKSsl-l~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSL-LTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHhc
Confidence 367899999999963 444443
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=24.70 E-value=25 Score=38.77 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| ++|++.
T Consensus 369 G~~~~ivG~sGsGKST--Ll~~l~ 390 (582)
T 3b60_A 369 GKTVALVGRSGSGKST--IASLIT 390 (582)
T ss_dssp TCEEEEEECTTSSHHH--HHHHHT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999998 555554
No 433
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=24.70 E-value=29 Score=38.50 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=16.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+||||. +|++.
T Consensus 381 G~~~~ivG~sGsGKSTl--l~~l~ 402 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTI--VNLLM 402 (598)
T ss_dssp TCEEEEECCTTSSTTHH--HHHHT
T ss_pred CCEEEEECCCCCcHHHH--HHHHh
Confidence 44578899999999994 45543
No 434
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=24.70 E-value=27 Score=30.26 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||| ++.++.
T Consensus 6 i~v~G~~~~GKss-li~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSA-LTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHH-HHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHH
Confidence 5789999999996 344444
No 435
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=24.66 E-value=28 Score=30.39 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||.+ .++.
T Consensus 9 i~v~G~~~~GKssli-~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLV-LRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHH-HHHH
Confidence 578999999999743 4443
No 436
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=24.60 E-value=26 Score=38.63 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=16.9
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| ++|++.
T Consensus 369 G~~~~ivG~sGsGKST--ll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKST--IANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457799999999998 455554
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=24.54 E-value=26 Score=33.79 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=12.8
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|.|.+|+||||.+
T Consensus 25 I~I~G~~GSGKST~a 39 (252)
T 1uj2_A 25 IGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467899999999964
No 438
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.46 E-value=26 Score=39.84 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=14.0
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
.+.+++|++|||||+.+
T Consensus 208 ~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CCeEEEcCCCCCHHHHH
Confidence 35688999999999854
No 439
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=24.33 E-value=28 Score=30.55 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|.|||| ++.++.
T Consensus 7 i~i~G~~~vGKSs-l~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTS-LASLFA 25 (175)
T ss_dssp EEEECCTTSSHHH-HHHHHH
T ss_pred EEEECCCCccHHH-HHHHHh
Confidence 6789999999996 334444
No 440
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.33 E-value=55 Score=31.00 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=26.5
Q ss_pred cCCCcEEEEecC------CCCChhHHHhhcc-CcCcceEEEeCCC
Q 038017 280 MEQLKFLVIDEA------AQLKESESAIPLQ-LPCIQHAILVGDE 317 (610)
Q Consensus 280 ~~~fD~vIIDEA------sQ~~E~e~lipL~-~~~~k~~ILvGD~ 317 (610)
...+|+||+||. +.+.+.+.+--|. .+...++|+-|-.
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 357999999999 6777777554443 2334688888843
No 441
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=24.30 E-value=26 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=16.5
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| ++|++.
T Consensus 367 G~~~~ivG~sGsGKST--ll~~l~ 388 (578)
T 4a82_A 367 GETVAFVGMSGGGKST--LINLIP 388 (578)
T ss_dssp TCEEEEECSTTSSHHH--HHTTTT
T ss_pred CCEEEEECCCCChHHH--HHHHHh
Confidence 4457799999999999 445543
No 442
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=24.23 E-value=27 Score=38.28 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=13.6
Q ss_pred CceEEEccCCCCchhHH
Q 038017 524 RSTFILGRSGTGKTTIL 540 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~ 540 (610)
+..++.|.|||||||..
T Consensus 236 ~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred eEEEEEecCCCCHHHHh
Confidence 34677899999999944
No 443
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=24.03 E-value=28 Score=30.28 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||| ++.++.
T Consensus 6 i~v~G~~~~GKss-li~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSC-LLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHH-HHHHHH
T ss_pred EEEECcCCCCHHH-HHHHHH
Confidence 5789999999996 344444
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=23.97 E-value=28 Score=30.64 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|.+|+||||. +.++.
T Consensus 11 i~v~G~~~~GKSsl-i~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSL-MHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 67899999999974 34444
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=23.93 E-value=29 Score=30.21 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=14.0
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 6 i~v~G~~~~GKssl-i~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSL-VLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57899999999973 33443
No 446
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=23.77 E-value=28 Score=30.62 Aligned_cols=20 Identities=35% Similarity=0.740 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++.++..
T Consensus 12 i~v~G~~~~GKss-li~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSA-LTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHH-HHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHh
Confidence 5789999999996 3444443
No 447
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=23.77 E-value=29 Score=30.57 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 10 i~v~G~~~~GKSsl-i~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSL-MNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 67899999999973 44444
No 448
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.62 E-value=29 Score=32.12 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|++|+||||. +.++.
T Consensus 15 i~~~G~~g~GKTsl-~~~l~ 33 (218)
T 1nrj_B 15 IIIAGPQNSGKTSL-LTLLT 33 (218)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 67899999999964 44444
No 449
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=23.59 E-value=29 Score=34.70 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=15.4
Q ss_pred CCceEEEccCCCCchhHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~ 545 (610)
+....++|+||+||+| +++++
T Consensus 169 geiv~l~G~sG~GKST--ll~~l 189 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSS--LLNAI 189 (301)
T ss_dssp SSEEEEECSTTSSHHH--HHHHH
T ss_pred CCeEEEECCCCCcHHH--HHHHh
Confidence 3446789999999997 44444
No 450
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=23.52 E-value=35 Score=35.26 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=17.1
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.+.|++|+||||.++.-.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457789999999999876544
No 451
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=23.51 E-value=28 Score=40.24 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=18.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHh
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
++.+++.|++|||||+ +.|.+..+
T Consensus 238 p~GILL~GPPGTGKT~--LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTL--IARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHH--HHHHHHTT
T ss_pred CCeEEEECCCCCCHHH--HHHHHHHH
Confidence 5678999999999996 44555443
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=23.38 E-value=30 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=13.5
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
++++|++|+||||...
T Consensus 8 i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999999653
No 453
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=23.32 E-value=30 Score=30.01 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 9 i~v~G~~~~GKssl-i~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSL-VLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57899999999973 34444
No 454
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=23.26 E-value=30 Score=31.33 Aligned_cols=19 Identities=26% Similarity=0.467 Sum_probs=14.0
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+|||| ++.++.
T Consensus 23 i~ivG~~~vGKSs-L~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSA-LVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHH-HHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHh
Confidence 5788999999996 333444
No 455
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=23.22 E-value=32 Score=35.72 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=16.4
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+.|+|++|+||||-++.-.
T Consensus 61 G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3347789999999998665433
No 456
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=23.11 E-value=31 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 12 i~v~G~~~~GKssl-~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSL-LLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHH-HHHHC
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 57899999999973 44443
No 457
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.00 E-value=42 Score=30.93 Aligned_cols=20 Identities=40% Similarity=0.283 Sum_probs=15.7
Q ss_pred ceEEEccCCCCchhHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl 544 (610)
-.++.|..|+||||.++-.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35689999999999876444
No 458
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=23.00 E-value=29 Score=37.03 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=18.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHh
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNE 548 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e 548 (610)
|.-..++|+||+||||. ++++...
T Consensus 157 Gq~~~IvG~sGsGKSTL--l~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVL--LGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHHH--HHHHhcc
Confidence 44567899999999995 6776553
No 459
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=23.00 E-value=1e+02 Score=34.17 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+...++..++|||||.+.++-.+..-.. . | .+-++.|...-|.+||
T Consensus 22 ~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~--------------------~------~kvli~t~T~~l~~Qi 67 (620)
T 4a15_A 22 SYGVALESPTGSGKTIMALKSALQYSSE--------R--------------------K------LKVLYLVRTNSQEEQV 67 (620)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHH--------H--------------------T------CEEEEEESSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhhhh--------c--------------------C------CeEEEECCCHHHHHHH
Confidence 5568889999999999998887753110 0 0 2348999999999998
Q ss_pred HHHhhhc
Q 038017 603 KQHISHM 609 (610)
Q Consensus 603 k~~~~~l 609 (610)
-+-+.+|
T Consensus 68 ~~el~~l 74 (620)
T 4a15_A 68 IKELRSL 74 (620)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 460
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=22.87 E-value=31 Score=30.41 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=14.7
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++.++..
T Consensus 9 i~v~G~~~~GKss-l~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTS-LTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHH-HHHHHHG
T ss_pred EEEECcCCCCHHH-HHHHHHh
Confidence 5789999999996 4444443
No 461
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=22.83 E-value=31 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=14.4
Q ss_pred ceEEEccCCCCchhHHHHHHH
Q 038017 525 STFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~kl~ 545 (610)
.+.++|.+|+||||. +.++.
T Consensus 10 ~i~v~G~~~~GKssl-~~~l~ 29 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTL-LDAIR 29 (178)
T ss_dssp EEEEESCTTTTHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHh
Confidence 367899999999963 34443
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=22.77 E-value=31 Score=32.81 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.2
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
.+.+.|.+|+||||.+
T Consensus 18 ~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVA 33 (236)
T ss_dssp EEEEECSSCSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568999999999954
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.74 E-value=30 Score=32.41 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=15.3
Q ss_pred ceEEEccCCCCchhHHHHH
Q 038017 525 STFILGRSGTGKTTILTMK 543 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~~k 543 (610)
-.+++|+.|+||||.+-.=
T Consensus 25 ~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 4678999999999976543
No 464
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=22.72 E-value=31 Score=35.89 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=16.1
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
+..+.++|+||+||+|. ++++.
T Consensus 215 G~~~~lvG~sG~GKSTL--ln~L~ 236 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSL--LNALL 236 (358)
T ss_dssp TSEEEEECCTTSSHHHH--HHHHH
T ss_pred CCEEEEECCCCccHHHH--HHHHh
Confidence 34578999999999983 34443
No 465
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=22.70 E-value=31 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 17 i~v~G~~~~GKssl-i~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSL-ITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57889999999973 34443
No 466
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=22.67 E-value=31 Score=33.09 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=12.1
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+++.|.+|+||||.
T Consensus 29 i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 29 ITFEGPEGSGKTTV 42 (229)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999995
No 467
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=22.62 E-value=34 Score=35.21 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl 544 (610)
++.+++.|++|+|||+.+..-.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3446789999999998766543
No 468
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=22.46 E-value=32 Score=30.00 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=14.7
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++.++..
T Consensus 10 i~v~G~~~~GKss-l~~~l~~ 29 (171)
T 1upt_A 10 ILILGLDGAGKTT-ILYRLQV 29 (171)
T ss_dssp EEEECSTTSSHHH-HHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHhc
Confidence 6789999999996 3444443
No 469
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=22.39 E-value=33 Score=37.11 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=26.0
Q ss_pred hcCCeEEEEcccccchhc----ccccCCCcEEEEecCCCCC
Q 038017 259 FTKASLIFCTASSSYKLH----SVAMEQLKFLVIDEAAQLK 295 (610)
Q Consensus 259 l~~a~VI~~T~sss~~l~----~~~~~~fD~vIIDEAsQ~~ 295 (610)
-..++||+||+.....+. ......+++||||||=.+.
T Consensus 199 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 239 (563)
T 3i5x_A 199 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL 239 (563)
T ss_dssp HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT
T ss_pred cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHh
Confidence 458999999987643221 1223568999999998765
No 470
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=22.35 E-value=40 Score=30.09 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=14.8
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+||||.+ +.+.
T Consensus 17 i~vvG~~~~GKssL~--~~l~ 35 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNL--KWIY 35 (198)
T ss_dssp EEEECSTTSSHHHHH--HHHH
T ss_pred EEEECCCCCCHHHHH--HHHH
Confidence 578999999999865 4443
No 471
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=22.35 E-value=70 Score=34.25 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=15.3
Q ss_pred EEEecCHHHHHHHHHHhh
Q 038017 590 LFVTVSPKLCFAVKQHIS 607 (610)
Q Consensus 590 ~fvt~s~~L~~~vk~~~~ 607 (610)
+++|.+..++.++++.+.
T Consensus 188 lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 188 LILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEESCHHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHhh
Confidence 788999999999888764
No 472
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.34 E-value=29 Score=30.76 Aligned_cols=19 Identities=53% Similarity=0.753 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 21 i~v~G~~~~GKssl-i~~l~ 39 (183)
T 1moz_A 21 ILILGLDGAGKTTI-LYRLQ 39 (183)
T ss_dssp EEEEEETTSSHHHH-HHHTC
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 57889999999974 34444
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=22.25 E-value=30 Score=38.26 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCchhHHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~ 546 (610)
|..+.++|+||+|||| +++++.
T Consensus 369 Ge~~~ivG~sGsGKST--ll~~l~ 390 (587)
T 3qf4_A 369 GSLVAVLGETGSGKST--LMNLIP 390 (587)
T ss_dssp TCEEEEECSSSSSHHH--HHHTTT
T ss_pred CCEEEEECCCCCCHHH--HHHHHh
Confidence 4457899999999999 445554
No 474
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=22.18 E-value=32 Score=31.53 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=13.8
Q ss_pred eEEEccCCCCchhHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl 544 (610)
+.++|++|+|||| ++.++
T Consensus 26 i~vvG~~~vGKSs-Li~~l 43 (195)
T 3cbq_A 26 VMLVGESGVGKST-LAGTF 43 (195)
T ss_dssp EEEECSTTSSHHH-HHHHT
T ss_pred EEEECCCCCCHHH-HHHHH
Confidence 5789999999996 34444
No 475
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=22.08 E-value=32 Score=36.22 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.1
Q ss_pred CceEEEccCCCCchhHHHH
Q 038017 524 RSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 524 ~s~~vlGrSgtgktt~~~~ 542 (610)
.-+.++|++|+||||.+-.
T Consensus 27 ~~~~i~G~nG~GKstll~a 45 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDA 45 (430)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4578999999999995443
No 476
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=21.99 E-value=29 Score=38.08 Aligned_cols=16 Identities=50% Similarity=0.706 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
..++.|.|||||||..
T Consensus 227 ~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 227 VAVFFGLSGTGKTTLS 242 (529)
T ss_dssp EEEEEECTTSCHHHHT
T ss_pred EEEEEccccCChhhHh
Confidence 4667899999999843
No 477
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.99 E-value=42 Score=31.43 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.9
Q ss_pred eEEEccCCCCchhHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKL 544 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl 544 (610)
.++.|..|+||||.++-..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4678999999988766544
No 478
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=21.94 E-value=33 Score=30.54 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 14 i~v~G~~~~GKSsl-i~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSV-LYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 57899999999973 33443
No 479
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=21.90 E-value=31 Score=35.67 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.5
Q ss_pred ceEEEccCCCCchhHH
Q 038017 525 STFILGRSGTGKTTIL 540 (610)
Q Consensus 525 s~~vlGrSgtgktt~~ 540 (610)
-..++|++|+||||.+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3568999999999965
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=21.79 E-value=33 Score=30.30 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||.+ .++.
T Consensus 11 i~v~G~~~~GKssl~-~~~~ 29 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLL-ISYT 29 (182)
T ss_dssp EEEECSTTSSHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHH-HHHh
Confidence 678999999999743 4443
No 481
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=21.78 E-value=33 Score=30.36 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 8 i~~~G~~~~GKssl-~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCL-LISYT 26 (186)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECCCCCCHHHH-HHHHH
Confidence 57899999999974 33443
No 482
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=21.77 E-value=32 Score=32.64 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=12.1
Q ss_pred eEEEccCCCCchhH
Q 038017 526 TFILGRSGTGKTTI 539 (610)
Q Consensus 526 ~~vlGrSgtgktt~ 539 (610)
+.++|++|+||||.
T Consensus 32 i~lvG~~g~GKStl 45 (239)
T 3lxx_A 32 IVLVGKTGAGKSAT 45 (239)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999964
No 483
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.75 E-value=45 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=15.8
Q ss_pred CCceEEEccCCCCchhHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTM 542 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~ 542 (610)
...++++|.+|+||||.+-.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHH
Confidence 34688999999999985533
No 484
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.72 E-value=31 Score=39.91 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=13.0
Q ss_pred ceEEEccCCCCchhH
Q 038017 525 STFILGRSGTGKTTI 539 (610)
Q Consensus 525 s~~vlGrSgtgktt~ 539 (610)
+.+++|++|||||+.
T Consensus 193 ~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCEEEECTTSCHHHH
T ss_pred ceEEEcCCCCCHHHH
Confidence 578899999999974
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.72 E-value=38 Score=36.04 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=13.7
Q ss_pred ceEEEccCCCCchhHHH
Q 038017 525 STFILGRSGTGKTTILT 541 (610)
Q Consensus 525 s~~vlGrSgtgktt~~~ 541 (610)
.+.++|++|+||||.+.
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35678999999998654
No 486
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.72 E-value=72 Score=37.33 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCceEEEccCCCCchhHHHHHHHHHhHhhhhhhhhhhcccCCCcccccchhhhhhcCCCccccceeEEEEecCHHHHHHH
Q 038017 523 PRSTFILGRSGTGKTTILTMKLFQNEKHHHMAKEQFYGVNNGLTLHTSREVEAVEGLGGTERYILHQLFVTVSPKLCFAV 602 (610)
Q Consensus 523 ~~s~~vlGrSgtgktt~~~~kl~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~fvt~s~~L~~~v 602 (610)
+.++++.++.|+|||.++++-++.. +. .. .. ....+-|+|+....|+.++
T Consensus 263 g~~~ll~a~TGsGKTl~~~~~i~~~-----l~-----~~---~~-----------------~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 263 GKNALICAPTGSGKTFVSILICEHH-----FQ-----NM---PA-----------------GRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHTT-----TT-----TC---CS-----------------SCCCCEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHH-----HH-----hc---cc-----------------cCCCeEEEEeCCHHHHHHH
Confidence 4568899999999998877665432 10 00 00 0013469999999999998
Q ss_pred HHHhhh
Q 038017 603 KQHISH 608 (610)
Q Consensus 603 k~~~~~ 608 (610)
.+.+.+
T Consensus 313 ~~~~~~ 318 (936)
T 4a2w_A 313 KNVFKH 318 (936)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 487
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=21.66 E-value=32 Score=39.49 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=40.6
Q ss_pred cCCeEEEEcccccchh-cccccCCCcEEEEecCCCCChhH--HHhhcc-CcCcceEEEeCCCCcCCc
Q 038017 260 TKASLIFCTASSSYKL-HSVAMEQLKFLVIDEAAQLKESE--SAIPLQ-LPCIQHAILVGDECQLPA 322 (610)
Q Consensus 260 ~~a~VI~~T~sss~~l-~~~~~~~fD~vIIDEAsQ~~E~e--~lipL~-~~~~k~~ILvGD~~QLpP 322 (610)
..++||++|....... ..+....|++||||||-.+.-+. ..-.+. +....+++|-|=|-|-.+
T Consensus 344 ~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l 410 (800)
T 3mwy_W 344 MKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNI 410 (800)
T ss_dssp CCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCS
T ss_pred ccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCH
Confidence 4578999998775432 23445579999999998884322 222221 223468889998876544
No 488
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=21.63 E-value=34 Score=35.03 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=13.2
Q ss_pred eEEEccCCCCchhHHH
Q 038017 526 TFILGRSGTGKTTILT 541 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~ 541 (610)
++|.|++|+|||+.+.
T Consensus 6 i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCcCCHHHHHH
Confidence 5678999999998654
No 489
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.63 E-value=31 Score=36.64 Aligned_cols=12 Identities=50% Similarity=0.966 Sum_probs=11.3
Q ss_pred EEEccCCCCchh
Q 038017 527 FILGRSGTGKTT 538 (610)
Q Consensus 527 ~vlGrSgtgktt 538 (610)
.++|+||+||||
T Consensus 35 ~lvG~sGaGKST 46 (418)
T 2qag_C 35 MVVGESGLGKST 46 (418)
T ss_dssp EEECCTTSSHHH
T ss_pred EEECCCCCcHHH
Confidence 789999999997
No 490
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=21.63 E-value=31 Score=37.37 Aligned_cols=19 Identities=47% Similarity=0.632 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|+||+|||| +++++.
T Consensus 32 ~~liG~nGsGKST--Ll~~l~ 50 (483)
T 3euj_A 32 TTLSGGNGAGKST--TMAGFV 50 (483)
T ss_dssp EEEECCTTSSHHH--HHHHHH
T ss_pred EEEECCCCCcHHH--HHHHHh
Confidence 5689999999998 444543
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=21.63 E-value=32 Score=34.38 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=9.5
Q ss_pred eEEEccCCCCchhHH
Q 038017 526 TFILGRSGTGKTTIL 540 (610)
Q Consensus 526 ~~vlGrSgtgktt~~ 540 (610)
+.|-|.||+||||.+
T Consensus 8 IgItG~sGSGKSTva 22 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEESCC---CCTHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999965
No 492
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.62 E-value=1.5e+02 Score=34.04 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCeEEEEcccccchhcccccCCCcEEEEecCCCC
Q 038017 261 KASLIFCTASSSYKLHSVAMEQLKFLVIDEAAQL 294 (610)
Q Consensus 261 ~a~VI~~T~sss~~l~~~~~~~fD~vIIDEAsQ~ 294 (610)
.++||++|..-... ......+++||||||=.+
T Consensus 471 ~~~IvVgT~~ll~~--~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 471 QIDVVIGTHALIQE--DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp CCCEEEECTTHHHH--CCCCSCCCEEEEESCCCC
T ss_pred CCCEEEECHHHHhh--hhhccCCceEEecccchh
Confidence 59999999854322 234457899999999875
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=21.56 E-value=33 Score=30.83 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=14.1
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|.||||. +.++.
T Consensus 19 i~ivG~~~vGKSsL-~~~l~ 37 (181)
T 1fzq_A 19 ILLLGLDNAGKTTL-LKQLA 37 (181)
T ss_dssp EEEEESTTSSHHHH-HHHHC
T ss_pred EEEECCCCCCHHHH-HHHHh
Confidence 57899999999964 34443
No 494
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.54 E-value=33 Score=30.84 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.9
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+||||. +.+++.
T Consensus 26 i~v~G~~~~GKSsl-i~~l~~ 45 (195)
T 1svi_A 26 IALAGRSNVGKSSF-INSLIN 45 (195)
T ss_dssp EEEEEBTTSSHHHH-HHHHHT
T ss_pred EEEECCCCCCHHHH-HHHHhC
Confidence 67899999999963 445543
No 495
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.52 E-value=34 Score=30.17 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=14.2
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 13 i~v~G~~~~GKssl-i~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCL-LVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHH-HHHHH
T ss_pred EEEECcCCCCHHHH-HHHHH
Confidence 57899999999973 34444
No 496
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=21.50 E-value=34 Score=29.69 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++.++..
T Consensus 9 i~v~G~~~~GKSs-li~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSS-IMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHH-HHHHHHH
T ss_pred EEEECcCCCCHHH-HHHHHHc
Confidence 5789999999996 3444443
No 497
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=21.50 E-value=34 Score=30.15 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=14.4
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
+.++|++|+||||. +.++.
T Consensus 15 i~v~G~~~~GKSsl-i~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSL-VLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHH-HHHHH
T ss_pred EEEECcCCCCHHHH-HHHHH
Confidence 67899999999973 44444
No 498
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=21.49 E-value=34 Score=30.85 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|++|+|||| ++.++..
T Consensus 28 i~v~G~~~~GKSs-Li~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTN-LLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHH-HHHHHHH
T ss_pred EEEECcCCCCHHH-HHHHHhc
Confidence 5789999999996 3444443
No 499
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=21.42 E-value=33 Score=30.61 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=14.6
Q ss_pred eEEEccCCCCchhHHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLFQ 546 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~~ 546 (610)
+.++|.+|+||||. +.+++.
T Consensus 26 i~v~G~~~~GKSsl-i~~l~~ 45 (195)
T 3pqc_A 26 VAFVGRSNVGKSSL-LNALFN 45 (195)
T ss_dssp EEEEEBTTSSHHHH-HHHHHT
T ss_pred EEEECCCCCCHHHH-HHHHHc
Confidence 67899999999963 344443
No 500
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=21.42 E-value=34 Score=29.97 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=14.3
Q ss_pred eEEEccCCCCchhHHHHHHH
Q 038017 526 TFILGRSGTGKTTILTMKLF 545 (610)
Q Consensus 526 ~~vlGrSgtgktt~~~~kl~ 545 (610)
++++|.+|+|||| ++.++.
T Consensus 18 i~v~G~~~~GKSs-li~~l~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSC-LLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHH-HHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHH
Confidence 6789999999997 344444
Done!