BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038019
(866 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 140/294 (47%), Gaps = 11/294 (3%)
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
G + L + G G + T L +L I N F GP+P L L +LS +
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 122 HNDFSGPVPREL-GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-S 179
N F+G +P L G LT L N+F GA+PP G+ + LE L + S GE+P
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
T K+R ++ L S N F+G++P+ + N + L +L N+F GPI
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 239 QMSDIYNVSSSLDFVMSLKN---LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295
++ + N + +L N L L L ++GTIP +G L L+ L L N L G
Sbjct: 395 ELY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 296 QIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFPLWV 347
+IP L + +LE L L N L+G +P S NL I LS+N L+G P W+
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 10/288 (3%)
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
G+ + L+++ +G IP+EL+ ++ L L +D N TG +PS + N + L ++S S
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTF 181
+N +G +P+ +G L+ L +L N+FSG +P ELG+ L L +++ G IP+
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXXXXXQ 239
K Q+ + N GK +I N K GN FQG
Sbjct: 556 FK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 240 M-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ S +Y +S F + ++ L + +++G IP IG + L IL+L N+++G IP
Sbjct: 612 ITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 299 ATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFP 344
+ ++ L L L +N L G +P S L +IDLS+N+LSG P
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 148/344 (43%), Gaps = 36/344 (10%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IP L L L + N+ +G +PS +G+LS+L L N G +P+EL +K
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT 198
L L N+ +G +P L N L + + + GEIP +L N+ L S+N F+
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQM---------------SDI 243
G IP +G+ L L N F G IP +
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 244 YNVSSSLDFV-MSLKNLTDLSLRNAL-ITGTIPFGIGELQM-----LQILDLSFNNLTGQ 296
+ + L+F + + L LS RN IT + G + LD+S+N L+G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 297 IPATLFNIDSLEYLF---LGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFPLWVNS-- 349
IP I S+ YLF LG+N +SG++PD+ + L +DLS N L G P +++
Sbjct: 645 IPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 350 -ELQMNLAVNNFKF---DISNISVFPGLNCLQRNFTCNRNAPQC 389
+++L+ NN ++ FP L C P+C
Sbjct: 702 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L L + N FTG +P + N S L+ L S N SG +P LG+L +L L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
G +P EL + LE L +D GEIPS + N+ + S+N TG+IP +IG
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 211 LKSLRFQGNSFQGPIP 226
L L+ NSF G IP
Sbjct: 513 LAILKLSNNSFSGNIP 528
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 101/261 (38%), Gaps = 58/261 (22%)
Query: 91 LTVLKIDQNFFTGPLPSF--IGNLSRLMFLSFSHN--DFSGPVPRELGNLKELTVLAFGT 146
LT L + +N +GP+ + +G+ S L FL+ S N DF G V L L L VL
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206
N+ SGA + + D CG ++ L S N +G + +
Sbjct: 158 NSISGA--------NVVGWVLSDGCGE-------------LKHLAISGNKISGDVD--VS 194
Query: 207 NWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRN 266
L+ L N+F IP F+ L L +
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-------------------------FLGDCSALQHLDISG 229
Query: 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS 326
++G I L++L++S N G IP + SL+YL L N +G +PD S
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 327 ---ENLQKIDLSHNHLSGTFP 344
+ L +DLS NH G P
Sbjct: 288 GACDTLTGLDLSGNHFYGAVP 308
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNID---SLEYLFLGNNSLSGTLPDQKSENLQKIDLS 335
+L L++LDLS N+++G D L++L + N +SG + + NL+ +D+S
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 336 HNHLSGTFPLWVN-SELQ-MNLAVNNFKFDIS 365
N+ S P + S LQ ++++ N D S
Sbjct: 206 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 237
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 140/294 (47%), Gaps = 11/294 (3%)
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
G + L + G G + T L +L I N F GP+P L L +LS +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 122 HNDFSGPVPREL-GNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIP-S 179
N F+G +P L G LT L N+F GA+PP G+ + LE L + S GE+P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 180 TFAKLRNMQTLWASDNPFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
T K+R ++ L S N F+G++P+ + N + L +L N+F GPI
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 239 QMSDIYNVSSSLDFVMSLKN---LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295
++ + N + +L N L L L ++GTIP +G L L+ L L N L G
Sbjct: 398 ELY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 296 QIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFPLWV 347
+IP L + +LE L L N L+G +P S NL I LS+N L+G P W+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 10/288 (3%)
Query: 62 GATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFS 121
G+ + L+++ +G IP+EL+ ++ L L +D N TG +PS + N + L ++S S
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 122 HNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTF 181
+N +G +P+ +G L+ L +L N+FSG +P ELG+ L L +++ G IP+
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 182 AKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXXXXXQ 239
K Q+ + N GK +I N K GN FQG
Sbjct: 559 FK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 240 M-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ S +Y +S F + ++ L + +++G IP IG + L IL+L N+++G IP
Sbjct: 615 ITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 299 ATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFP 344
+ ++ L L L +N L G +P S L +IDLS+N+LSG P
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 148/344 (43%), Gaps = 36/344 (10%)
Query: 79 GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKE 138
G IP L L L + N+ +G +PS +G+LS+L L N G +P+EL +K
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 139 LTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFT 198
L L N+ +G +P L N L + + + GEIP +L N+ L S+N F+
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 199 GKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQM---------------SDI 243
G IP +G+ L L N F G IP +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 244 YNVSSSLDFV-MSLKNLTDLSLRNAL-ITGTIPFGIGELQM-----LQILDLSFNNLTGQ 296
+ + L+F + + L LS RN IT + G + LD+S+N L+G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 297 IPATLFNIDSLEYLF---LGNNSLSGTLPDQKSE--NLQKIDLSHNHLSGTFPLWVNS-- 349
IP I S+ YLF LG+N +SG++PD+ + L +DLS N L G P +++
Sbjct: 648 IPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 350 -ELQMNLAVNNFKF---DISNISVFPGLNCLQRNFTCNRNAPQC 389
+++L+ NN ++ FP L C P+C
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L L + N FTG +P + N S L+ L S N SG +P LG+L +L L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTK 210
G +P EL + LE L +D GEIPS + N+ + S+N TG+IP +IG
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 211 LKSLRFQGNSFQGPIP 226
L L+ NSF G IP
Sbjct: 516 LAILKLSNNSFSGNIP 531
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 101/261 (38%), Gaps = 58/261 (22%)
Query: 91 LTVLKIDQNFFTGPLPSF--IGNLSRLMFLSFSHN--DFSGPVPRELGNLKELTVLAFGT 146
LT L + +N +GP+ + +G+ S L FL+ S N DF G V L L L VL
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 147 NNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIG 206
N+ SGA + + D CG ++ L S N +G + +
Sbjct: 161 NSISGA--------NVVGWVLSDGCGE-------------LKHLAISGNKISGDVD--VS 197
Query: 207 NWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRN 266
L+ L N+F IP F+ L L +
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-------------------------FLGDCSALQHLDISG 232
Query: 267 ALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS 326
++G I L++L++S N G IP + SL+YL L N +G +PD S
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 327 ---ENLQKIDLSHNHLSGTFP 344
+ L +DLS NH G P
Sbjct: 291 GACDTLTGLDLSGNHFYGAVP 311
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 279 ELQMLQILDLSFNNLTGQIPATLFNID---SLEYLFLGNNSLSGTLPDQKSENLQKIDLS 335
+L L++LDLS N+++G D L++L + N +SG + + NL+ +D+S
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 336 HNHLSGTFPLWVN-SELQ-MNLAVNNFKFDIS 365
N+ S P + S LQ ++++ N D S
Sbjct: 209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 111/243 (45%), Gaps = 14/243 (5%)
Query: 64 TCHITKLRVYGLN--KKGVIPEELVTLQYLTVLKIDQ-NFFTGPLPSFIGNLSRLMFLSF 120
T + L + GLN K IP L L YL L I N GP+P I L++L +L
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 121 SHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPST 180
+H + SG +P L +K L L F N SG LPP + +L L + D G IP +
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 181 FAKLRNMQT-LWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQ 239
+ + T + S N TGKIP N L + N +G
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG-----DASVLFGSDKN 222
Query: 240 MSDIYNVSSSLDFVMSL----KNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTG 295
I+ +SL F + KNL L LRN I GT+P G+ +L+ L L++SFNNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 296 QIP 298
+IP
Sbjct: 283 EIP 285
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 93/219 (42%), Gaps = 26/219 (11%)
Query: 128 PVPRELGNLKELTVLAFG-TNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
P+P L NL L L G NN G +PP + L +L LYI G IP ++++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 187 MQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNV 246
+ TL S N +G +P I + L + F GN G IP D Y
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---------------DSYGS 171
Query: 247 SSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDS 306
S L T +++ +TG IP L L +DLS N L G + +
Sbjct: 172 FSKL--------FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222
Query: 307 LEYLFLGNNSLSGTLPDQK-SENLQKIDLSHNHLSGTFP 344
+ + L NSL+ L S+NL +DL +N + GT P
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
NI E + DF + KL + V + G++APEY G +EK DVF +G
Sbjct: 172 NILLDEEFEAVVGDFGLA-KLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYG 230
Query: 704 VVALEIISGRASSD--KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVI 760
V+ LE+I+G+ + D + + + + LL+W L + + LVD L + D+E ++I
Sbjct: 231 VMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLI 290
Query: 761 GVALLCTQTSPMMRPPMSRVVAMLAGD 787
VALLCTQ+SPM RP MS VV ML GD
Sbjct: 291 QVALLCTQSSPMERPKMSEVVRMLEGD 317
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 630 NDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+D EV +G + F EL+ A+ +F+ N LG GG+G VYK
Sbjct: 15 EEDPEVHLGQLKR---FSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFG 703
NI E + DF + KL + V G++APEY G +EK DVF +G
Sbjct: 164 NILLDEEFEAVVGDFGLA-KLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYG 222
Query: 704 VVALEIISGRASSD--KSLDMEKIYLLEWAWNLHENNQSFGLVDPTLT-EFNDKEALRVI 760
V+ LE+I+G+ + D + + + + LL+W L + + LVD L + D+E ++I
Sbjct: 223 VMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLI 282
Query: 761 GVALLCTQTSPMMRPPMSRVVAMLAGD 787
VALLCTQ+SPM RP MS VV ML GD
Sbjct: 283 QVALLCTQSSPMERPKMSEVVRMLEGD 309
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 630 NDDEEVLVGIGSKPNIFGYAELRSATKDFNRSNKLGEGGYGPVYK 674
+D EV +G + F EL+ A+ +F N LG GG+G VYK
Sbjct: 7 EEDPEVHLG---QLKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF S K E G + V + GY+ PEY ++G LTEK+DV+SFGVV E++ R++
Sbjct: 182 DFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI 241
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIG-VALLCTQTSPMMRP 775
+SL E + L EWA H N Q +VDP L + E+LR G A+ C S RP
Sbjct: 242 VQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRP 301
Query: 776 PMSRVV 781
M V+
Sbjct: 302 SMGDVL 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASS 716
DF S K E + V + GY+ PEY ++G LTEK+DV+SFGVV E++ R++
Sbjct: 182 DFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI 241
Query: 717 DKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIG-VALLCTQTSPMMRP 775
+SL E + L EWA H N Q +VDP L + E+LR G A+ C S RP
Sbjct: 242 VQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRP 301
Query: 776 PMSRVV 781
M V+
Sbjct: 302 SMGDVL 307
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 116/269 (43%), Gaps = 43/269 (15%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L+F +N + P L NL LE+L I
Sbjct: 128 LTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 181 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 227
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF-GIGELQMLQILD 287
Q+ DI ++S L NLTDL L N I+ P G+ +L L+
Sbjct: 228 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK--- 267
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 325
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 326 LTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L +N ++ P L+++D+S N +S
Sbjct: 132 NRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 189
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 34/153 (22%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 108
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N IS+
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-------------------------ISD 143
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLH 398
IS GL LQ+ +F+ N+ L +L L
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 116/269 (43%), Gaps = 43/269 (15%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L+F +N + P L NL LE+L I
Sbjct: 128 LTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 181 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 227
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF-GIGELQMLQILD 287
Q+ DI ++S L NLTDL L N I+ P G+ +L L+
Sbjct: 228 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK--- 267
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 325
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 326 LTKLQRLFFSNNKVSDVSSLANLTNINWL 354
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L +N ++ P L+++D+S N +S
Sbjct: 132 NRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 189
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 34/153 (22%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 108
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N IS+
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-------------------------ISD 143
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLH 398
IS GL LQ+ +F+ N+ L +L L
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 115/269 (42%), Gaps = 43/269 (15%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L F +N + P L NL LE+L I
Sbjct: 128 LTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 181 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 227
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF-GIGELQMLQILD 287
Q+ DI ++S L NLTDL L N I+ P G+ +L L+
Sbjct: 228 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK--- 267
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 268 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 325
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 326 LTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 34/153 (22%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 108
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N IS+
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-------------------------ISD 143
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLH 398
IS GL LQ+ NF+ N+ L +L L
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLE 176
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L +N ++ P L+++D+S N +S
Sbjct: 132 NRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 189
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 124/294 (42%), Gaps = 45/294 (15%)
Query: 85 LVTLQYLTVLKIDQNFFTG--PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVL 142
L L LT L + N T PL + NL+RL S + +D S L L L L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLT-NLNRLELSSNTISDISA-----LSGLTSLQQL 160
Query: 143 AFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP 202
+FG N L P L NL LE+L I S S AKL N+++L A++N + P
Sbjct: 161 SFG--NQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 215
Query: 203 DFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDL 262
+G T L L GN Q+ DI ++S L NLTDL
Sbjct: 216 --LGILTNLDELSLNGN-------------------QLKDIGTLAS-------LTNLTDL 247
Query: 263 SLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLP 322
L N I+ P + L L L L N ++ P L + +L L L N L P
Sbjct: 248 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
Query: 323 DQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGLNCL 376
+NL + L N++S P+ ++LQ NN D+S+++ +N L
Sbjct: 304 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWL 357
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 59 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 112
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N +S L + LQ +F +++
Sbjct: 113 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LSFGNQVTD 168
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLHPEMRADNIVYE 409
+ L L+R + + N+ + L L L + +N + +
Sbjct: 169 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 212
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 78 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 135
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ I A L + SL+ L GN ++ P L+++D+S N +S
Sbjct: 136 NRLELSSNTIS-DISA-LSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS 192
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 193 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 228
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 114/268 (42%), Gaps = 42/268 (15%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L+FG N L P L NL LE+L I
Sbjct: 133 LTNLNRLELSSNTISDISA-----LSGLTSLQQLSFG--NQVTDLKP-LANLTTLERLDI 184
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 185 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 231
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDL 288
Q+ DI ++S L NLTDL L N I+ P + L L L L
Sbjct: 232 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272
Query: 289 SFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVN 348
N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 330
Query: 349 SELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTNINWL 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 113
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N +S L + LQ +F +++
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LSFGNQVTD 169
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLHPEMRADNIVYE 409
+ L L+R + + N+ + L L L + +N + +
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 213
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 79 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 136
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L GN ++ P L+++D+S N +S
Sbjct: 137 NRLELSSNTISD--ISALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS 193
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 115/269 (42%), Gaps = 44/269 (16%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L FG N L P L NL LE+L I
Sbjct: 128 LTNLNRLELSSNTISDISA-----LSGLTSLQQLNFG--NQVTDLKP-LANLTTLERLDI 179
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 180 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 226
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF-GIGELQMLQILD 287
Q+ DI ++S L NLTDL L N I+ P G+ +L L+
Sbjct: 227 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK--- 266
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 324
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 325 LTKLQRLFFYNNKVSDVSSLANLTNINWL 353
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 108
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N +S L + LQ NF +++
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LNFGNQVTD 164
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLHPEMRADNIVYE 409
+ L L+R + + N+ + L L L + +N + +
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 208
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L GN ++ P L+++D+S N +S
Sbjct: 132 NRLELSSNTISD--ISALSGLTSLQQLNFGN-QVTDLKPLANLTTLERLDISSNKVSDIS 188
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 189 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 115/269 (42%), Gaps = 44/269 (16%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
+ NL+RL S + +D S L L L L FG N L P L NL LE+L I
Sbjct: 128 LTNLNRLELSSNTISDISA-----LSGLTSLQQLNFG--NQVTDLKP-LANLTTLERLDI 179
Query: 169 DSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXX 228
S S AKL N+++L A++N + P +G T L L GN
Sbjct: 180 SSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN--------- 226
Query: 229 XXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPF-GIGELQMLQILD 287
Q+ DI ++S L NLTDL L N I+ P G+ +L L+
Sbjct: 227 ----------QLKDIGTLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK--- 266
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L N ++ P L + +L L L N L P +NL + L N++S P+
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 324
Query: 348 NSELQMNLAVNNFKFDISNISVFPGLNCL 376
++LQ NN D+S+++ +N L
Sbjct: 325 LTKLQRLFFSNNKVSDVSSLANLTNINWL 353
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 249 SLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP--ATLFNIDS 306
S+D V L NLT ++ N +T P + +++D+ NN QI L N+ +
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTN 108
Query: 307 LEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNFKFDISN 366
L L L NN ++ P + NL +++LS N +S L + LQ NF +++
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LNFGNQVTD 164
Query: 367 ISVFPGLNCLQR-NFTCNRNAPQCKLPSLCCLHPEMRADNIVYE 409
+ L L+R + + N+ + L L L + +N + +
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 208
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 239 QMSDIY---NVSSSLDFVMS------------LKNLTDLSLRNALITGTIPFGIGELQML 283
Q++DI N++ +D +M+ L NLT L+L N IT P + L L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 284 QILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTF 343
L+LS N ++ + L + SL+ L GN ++ P L+++D+S N +S
Sbjct: 132 NRLELSSNTISD--ISALSGLTSLQQLNFGN-QVTDLKPLANLTTLERLDISSNKVSDIS 188
Query: 344 PLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRN 379
L + L+ +A NN DI+ + + L+ L N
Sbjct: 189 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 13/162 (8%)
Query: 64 TCHITKLRVYGLNKK---GVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSF 120
TC ++K +++ L K E +TL + KID N F G L+ L+ L+
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG--------LTHLLKLNL 330
Query: 121 SHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPST 180
S N R NL +L VL N+ L L++L +D+
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 181 FAKLRNMQTLWASDNPFTGKIP--DFIGNWTKLKSLRFQGNS 220
F +L ++Q +W NP+ P D++ W S + QG++
Sbjct: 391 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 432
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 681 GYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQS 740
Y+APE A+RG +T K+D++SFGVV LEII+G + D+ + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 646 FGYAELRSATKDFNRS------NKLGEGGYGPVYK 674
F + EL++ T +F+ NK+GEGG+G VYK
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 681 GYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQS 740
Y+APE A+RG +T K+D++SFGVV LEII+G + D+ + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 646 FGYAELRSATKDFNRS------NKLGEGGYGPVYK 674
F + EL++ T +F+ NK+GEGG+G VYK
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 681 GYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQS 740
Y+APE A+RG +T K+D++SFGVV LEII+G + D+ + ++ L E
Sbjct: 194 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 251
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+D + + + + VA C RP + +V +L
Sbjct: 252 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 295
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 646 FGYAELRSATKDFNRS------NKLGEGGYGPVYKVTAN 678
F + EL++ T +F+ NK+GEGG+G VYK N
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN 47
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 681 GYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLLEWAWNLHENNQS 740
Y APE A+RG +T K+D++SFGVV LEII+G + D+ + ++ L E
Sbjct: 191 AYXAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 248
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAML 784
+D + + VA C RP + +V +L
Sbjct: 249 EDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKKVQQLL 292
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 646 FGYAELRSATKDFNRS------NKLGEGGYGPVYKVTAN 678
F + EL++ T +F+ NK GEGG+G VYK N
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVN 44
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 81 IPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELT 140
I + +LT L ++ N T LP+ I NLS L L SHN + +P ELG+ +L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 141 VLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKL 184
F +N LP E GNL L+ L ++ G + F K+
Sbjct: 297 YFYF-FDNMVTTLPWEFGNLCNLQFLGVE----GNPLEKQFLKI 335
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 281 QMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKS-ENLQKIDLSHNHL 339
Q+ LDLS N I A +F D L L+L NSL+ + K+ NL+ +DLSHN L
Sbjct: 224 QLWHALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL 282
Query: 340 SGTFPLWVNSELQM 353
+ + P + S Q+
Sbjct: 283 T-SLPAELGSCFQL 295
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 174 TRDIXETDXXRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 224
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 225 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 270
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 271 KMRPTFLEIVNLLKDDL 287
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 177 TRDIXETDXXRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 227
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 228 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 273
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 274 KMRPTFLEIVNLLKDDL 290
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 5/160 (3%)
Query: 63 ATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSH 122
+C T++R N KG+ T L+++ N L++L LS S
Sbjct: 5 CSCSGTEIRC---NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ 61
Query: 123 NDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFA 182
N L +LT+L N L +L++L +D+ F
Sbjct: 62 NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Query: 183 KLRNMQTLWASDNPFTGKIP--DFIGNWTKLKSLRFQGNS 220
+L ++Q +W NP+ P D++ W S + QG++
Sbjct: 122 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 161
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 177 TRDIXETDXXRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 227
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 228 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 273
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 274 NMRPTFLEIVNLLKDDL 290
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 177 TRDIYETDYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 227
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 228 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 273
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 274 KMRPTFLEIVNLLKDDL 290
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 82/227 (36%), Gaps = 29/227 (12%)
Query: 95 KIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG--PVPRELGNLKELTVLAFGTNNFSGA 152
++ + PLP F RL L D +G +P L L N A
Sbjct: 83 RVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLR-A 141
Query: 153 LPPELGNLAKLEQLYIDSCGAGGEIPSTFAK---------LRNMQTLWASDNPFTG--KI 201
LP + +L +L +L I +C E+P A L N+Q+L +TG +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE---WTGIRSL 198
Query: 202 PDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNL 259
P I N LKSL+ + + S GP + + N LK L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 260 TDLSLRNALITGTIPFGIGELQMLQILDL-------SFNNLTGQIPA 299
N L T+P I L L+ LDL +L Q+PA
Sbjct: 259 ILKDCSNLL---TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 176 TRDIYETDYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 226
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 227 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 272
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 273 KMRPTFLEIVNLLKDDL 289
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 178 TRDIYETDYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 228
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 229 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 274
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 275 NMRPTFLEIVNLLKDDL 291
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 177 TRDIYETDYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 227
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 228 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 273
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 274 NMRPTFLEIVNLLKDDL 290
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 67 ITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS 126
+T+L + G N+ ++P+EL ++LT++ + N + N+++L+ L S+N
Sbjct: 33 VTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYI 168
PR LK L +L+ N+ S +L+ L L I
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D + +GG G PV ++APE G T +D++SFGVV EI S
Sbjct: 177 TRDIYETAYYRKGGKGLLPVR--------WMAPESLKDGVFTTSSDMWSFGVVLWEITS- 227
Query: 713 RASSDKSLDMEKIYLLEWAWNLHENNQSFGLV-DPTLTEFNDKEALRVIGVALLCTQTSP 771
L E + N Q V D + D RV + +C Q +P
Sbjct: 228 --------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNP 273
Query: 772 MMRPPMSRVVAMLAGDI 788
MRP +V +L D+
Sbjct: 274 KMRPTFLEIVNLLKDDL 290
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSG-PVPRELGNLKELTVLAFGTNNF 149
L LKI N T P + NLS+L +L N S ++L LK L V G+N
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNV---GSNQI 277
Query: 150 SGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWT 209
S L NL++L L++++ G E L N+ TL+ S N T P + + +
Sbjct: 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333
Query: 210 KLKSLRF 216
K S F
Sbjct: 334 KXDSADF 340
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 276 GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLS 335
GI L L+ L+L+ N +T P L N+ L L++G N ++ Q NL+++ L+
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118
Query: 336 HNHLSGTFPLW-VNSELQMNLAVNNFKFDISNISVFPGLNCL 376
+++S PL + +NL N+ D+S +S GLN L
Sbjct: 119 EDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYL 160
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 103/277 (37%), Gaps = 55/277 (19%)
Query: 112 LSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171
L+ L +L+ + N + P L NL +LT L GTN + L NL L +LY++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 172 GAGGEIPSTFAKLRNMQTLWASDN-------PFT------------GKIPDF--IGNWTK 210
P A L +L N P + K+ D I N T
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTD 178
Query: 211 LKSLRFQGNSFQGPIPXXXXXXX---XXXXXQMSDIYNVSSSLDF---------VMSLKN 258
L SL N + P Q++DI V++ + L
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP 238
Query: 259 LTDLSLRNALITGTIPF----GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGN 314
L +LS L GT + +L L+ L++ N ++ + L N+ L LFL N
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNN 296
Query: 315 NSLSGTLPDQKSE------NLQKIDLSHNHLSGTFPL 345
N L ++ E NL + LS NH++ PL
Sbjct: 297 NQLG----NEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 90/239 (37%), Gaps = 31/239 (12%)
Query: 117 FLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGE 176
L +N + + NLK L L N S P L KLE+LY+ S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 177 IPSTFAKLRNMQTLWASDNPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 225
+P K +Q L +N T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 226 PXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285
++I + L +LT+L L IT + L L
Sbjct: 170 ----MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSL---SGTLPDQKSENLQKIDLSHNHLSG 341
L LSFN+++ +L N L L L NN L G L D K +Q + L +N++S
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 90/239 (37%), Gaps = 31/239 (12%)
Query: 117 FLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGE 176
L +N + + NLK L L N S P L KLE+LY+ S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 177 IPSTFAKLRNMQTLWASDNPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 225
+P K +Q L +N T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 226 PXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQI 285
++I + L +LT+L L IT + L L
Sbjct: 170 ----MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSL---SGTLPDQKSENLQKIDLSHNHLSG 341
L LSFN+++ +L N L L L NN L G L D K +Q + L +N++S
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHNNNISA 277
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 135 NLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASD 194
+L+ L + FG+N G + KL+QL + S F +L ++Q +W
Sbjct: 168 DLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHT 227
Query: 195 NPFTGKIP--DFIGNWTKLKSLRFQGNS 220
NP+ P D++ W S + QG++
Sbjct: 228 NPWDCSCPRIDYLSRWLNKNSQKEQGSA 255
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 673 YKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSD 717
Y V N Y ++APE EK DVFSFG+V EII GR ++D
Sbjct: 180 YTVVGNPY-WMAPEMINGRSYDEKVDVFSFGIVLCEII-GRVNAD 222
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 657 DFNRSNKLGEGG---YGPVYKVTANSYGYLAPEY--AMRGHLTEKADVFSFGVVALEIIS 711
DF S L GG V K + ++APE +RG+ KAD++SFG+ A+E+ +
Sbjct: 159 DFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADIWSFGITAIELAT 217
Query: 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVAL-----LC 766
G A K M+ + L L + S T DKE L+ G + LC
Sbjct: 218 GAAPYHKYPPMKVLML-----TLQNDPPSLE------TGVQDKEMLKKYGKSFRKMISLC 266
Query: 767 TQTSPMMRPPMSRVV 781
Q P RP + ++
Sbjct: 267 LQKDPEKRPTAAELL 281
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 657 DFNRSNKLGEGG---YGPVYKVTANSYGYLAPEY--AMRGHLTEKADVFSFGVVALEIIS 711
DF S L GG V K + ++APE +RG+ KAD++SFG+ A+E+ +
Sbjct: 164 DFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADIWSFGITAIELAT 222
Query: 712 GRASSDKSLDMEKIYLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVAL-----LC 766
G A K M+ + L L + S T DKE L+ G + LC
Sbjct: 223 GAAPYHKYPPMKVLML-----TLQNDPPSLE------TGVQDKEMLKKYGKSFRKMISLC 271
Query: 767 TQTSPMMRPPMSRVV 781
Q P RP + ++
Sbjct: 272 LQKDPEKRPTAAELL 286
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 49/223 (21%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
S F LRN+ L S + L+ L+ GNSFQ
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 461
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ DI+ L+NLT L L + P L LQ+L++S NN
Sbjct: 462 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN------ 505
Query: 299 ATLFNIDSLEYLFLG-----NNSLSGTLPDQKSE------NLQKIDLSHNHLSGT----- 342
F++D+ Y L + SL+ + +K E +L ++L+ N + T
Sbjct: 506 --FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Query: 343 FPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTCNRN 385
F W+ + Q+ + V + + + S G+ L N TC N
Sbjct: 564 FLQWIKDQRQLLVEVE--RMECATPSDKQGMPVLSLNITCQMN 604
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 170 TRDIXETDXXRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 221
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D ++ + +C Q +
Sbjct: 222 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLLELMRMCWQYN 265
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 266 PKMRPSFLEIISSIKEEMEPG 286
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 3/139 (2%)
Query: 85 LVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFS-GPVPRELGNLKELTVLA 143
++L+ L L I LS L L + N F +P L+ LT L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 144 FGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
P +L+ L+ L + S F +L ++Q +W NP+ P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 537 IDYLSRWLNKNSQKEQGSA 555
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 25/145 (17%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
S F LRN+ L S + L+ L+ GNSFQ
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 461
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ DI+ L+NLT L L + P L LQ+L+++ N L +P
Sbjct: 462 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510
Query: 299 ATLFN-IDSLEYLFLGNNSLSGTLP 322
+F+ + SL+ ++L N + P
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 62/174 (35%), Gaps = 13/174 (7%)
Query: 142 LAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKI 201
L +N S L KL LY++ F +L+N++TLW +DN
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 202 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSL-----DFVMSL 256
L LR N + P + YN SL D + SL
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG--YNELQSLPKGVFDKLTSL 159
Query: 257 KNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYL 310
K +L L N + +L L+ L L NN ++P F DSLE L
Sbjct: 160 K---ELRLYNNQLKRVPEGAFDKLTELKTLKLD-NNQLKRVPEGAF--DSLEKL 207
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 91 LTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFS 150
L L++D+N P +L++L +LS +N+ L L L N
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 151 GALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPF----TGKIPDFIG 206
L +L+ L +D+ F L ++ L +NP+ G I ++
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII--YMA 228
Query: 207 NWTKLKS 213
W K K+
Sbjct: 229 KWLKKKA 235
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
S F LRN+ L S + L+ L+ GNSFQ
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 485
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ DI+ L+NLT L L + P L LQ+L++S NN
Sbjct: 486 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN------ 529
Query: 299 ATLFNIDSLEYLFLG-----NNSLSGTLPDQKSE------NLQKIDLSHNHLSGT----- 342
F++D+ Y L + SL+ + +K E +L ++L+ N + T
Sbjct: 530 --FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587
Query: 343 FPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTC 382
F W+ + Q+ + V + + + S G+ L N TC
Sbjct: 588 FLQWIKDQRQLLVEVE--RMECATPSDKQGMPVLSLNITC 625
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 77 KKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNL 136
++ +P+ L+ LT L + Q P+ +LS L L+ SHN+F L
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541
Query: 137 KELTVLAFGTNNFSGALPPELGNL 160
L VL + N+ + EL +
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHF 565
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 53/162 (32%), Gaps = 24/162 (14%)
Query: 154 PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKS 213
P L +L L++D CG P F L +Q L+ DN D + L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 214 LRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTI 273
L GN +P L +L L L +
Sbjct: 157 LFLHGNRISS-VPERA-----------------------FRGLHSLDRLLLHQNRVAHVH 192
Query: 274 PFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
P +L L L L NNL+ L + +L+YL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 10/144 (6%)
Query: 58 TFDNGATCHITKLRVYGLNKKGV-IPEELVTLQYLTVLKIDQNFFTGPLPSF--IGNLSR 114
TF H L GL + G + L LQYL + D P +F +GNL+
Sbjct: 99 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ--DNALQALPDDTFRDLGNLTH 156
Query: 115 LMFLSFSHNDFSGPVP-RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA 173
L F H + VP R L L L N + P +L +L LY+ +
Sbjct: 157 L----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 174 GGEIPSTFAKLRNMQTLWASDNPF 197
A LR +Q L +DNP+
Sbjct: 213 SALPTEALAPLRALQYLRLNDNPW 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 53/162 (32%), Gaps = 24/162 (14%)
Query: 154 PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKS 213
P L +L L++D CG P F L +Q L+ DN D + L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 214 LRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTI 273
L GN +P L +L L L +
Sbjct: 158 LFLHGNRISS-VPERA-----------------------FRGLHSLDRLLLHQNRVAHVH 193
Query: 274 PFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
P +L L L L NNL+ L + +L+YL L +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 10/144 (6%)
Query: 58 TFDNGATCHITKLRVYGLNKKGV-IPEELVTLQYLTVLKIDQNFFTGPLPSF--IGNLSR 114
TF H L GL + G + L LQYL + D P +F +GNL+
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ--DNALQALPDDTFRDLGNLTH 157
Query: 115 LMFLSFSHNDFSGPVP-RELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGA 173
L F H + VP R L L L N + P +L +L LY+ +
Sbjct: 158 L----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 174 GGEIPSTFAKLRNMQTLWASDNPF 197
A LR +Q L +DNP+
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 70 LRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLS---RLMFLSFSHNDFS 126
L++ L + I E ++ L L I QN + G+ S L+ L+ S N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILT 412
Query: 127 GPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRN 186
+ R L + VL +N ++P ++ L L++L + S F +L +
Sbjct: 413 DTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 187 MQTLWASDNPFTGKIP--DFIGNWTKLKSLRFQGNS 220
+Q +W NP+ P D++ W S + QG++
Sbjct: 470 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 505
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDK 718
S ++APE + +EK DVFS+G++ E+I+ R D+
Sbjct: 167 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 206
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 679 SYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDK 718
S ++APE + +EK DVFS+G++ E+I+ R D+
Sbjct: 166 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 636 LVGIGSKP-NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLT 694
LV + KP NIF R DF +LG G G +V Y+APE ++G
Sbjct: 178 LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG---EVQEGDPRYMAPEL-LQGSYG 233
Query: 695 EKADVFSFGVVALEI 709
ADVFS G+ LE+
Sbjct: 234 TAADVFSLGLTILEV 248
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 179 TRDIXETDXXRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 230
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 231 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 274
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 275 PKMRPSFLEIISSIKEEMEPG 295
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 172 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 223
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D ++ + +C Q +
Sbjct: 224 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLLELMRMCWQYN 267
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 268 PKMRPSFLEIISSIKEEMEPG 288
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 614 GLIVISIMFYLWREKDNDDEEVLVGIG--SKPNIFGYAELRSATKDFNRSNKLGEGGYGP 671
G+ I M Y+ R D +LVG G K FG A L + R +G P
Sbjct: 117 GMAYIERMNYIHR--DLRSANILVGNGLICKIADFGLARLIEDNEXTAR-----QGAKFP 169
Query: 672 VYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ + APE A+ G T K+DV+SFG++ E+++
Sbjct: 170 I--------KWTAPEAALYGRFTIKSDVWSFGILLTELVT 201
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 276 GIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLS 335
I LQ ++ LDL+ +T P L + +L+ L+L N ++ P NLQ + +
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG 165
Query: 336 HNHLSGTFPLWVNSELQMNLAVNNFKFDISNISVFPGL 373
+N ++ PL S+L A +N DIS ++ P L
Sbjct: 166 NNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNL 203
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 179 STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 238
S F LRN+ L S + L+ L+ GNSFQ
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 166
Query: 239 QMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIP 298
+ DI+ L+NLT L L + P L LQ+L++S NN
Sbjct: 167 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN------ 210
Query: 299 ATLFNIDSLEYLFLG-----NNSLSGTLPDQKSE------NLQKIDLSHNHLSGT----- 342
F++D+ Y L + SL+ + +K E +L ++L+ N + T
Sbjct: 211 --FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
Query: 343 FPLWVNSELQMNLAVNNFKFDISNISVFPGLNCLQRNFTC 382
F W+ + Q+ + V + + + S G+ L N TC
Sbjct: 269 FLQWIKDQRQLLVEVE--RMECATPSDKQGMPVLSLNITC 306
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 115 LMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSCGAG 174
++ L+ S N +G V R L ++ VL NN ++P ++ +L L++L + S
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLK 486
Query: 175 GEIPSTFAKLRNMQTLWASDNPFTGKIP--DFIGNW 208
F +L ++Q +W DNP+ P ++ W
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 88 LQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146
L+ L L + N LP + NL+ L L S N +L L ++ +L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 147 NNFSGAL---PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
+ + P +L++L +D+ F +L ++Q +W NP+ P
Sbjct: 184 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 244 IDYLSRWLNKNSQKEQGSA 262
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 88 LQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146
L+ L L + N LP + NL+ L L S N +L L ++ +L
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 147 NNFSGAL---PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
+ + P +L++L +D+ F +L ++Q +W NP+ P
Sbjct: 185 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 245 IDYLSRWLNKNSQKEQGSA 263
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 185 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 236
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 237 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 280
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 281 PKMRPSFLEIISSIKEEMEPG 301
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 185 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 236
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 237 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 280
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 281 PKMRPSFLEIISSIKEEMEPG 301
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 207 TRDIYETDYYRKGGKGLLPV--------RWMSPESLKDGVFTTYSDVWSFGVVLWEIATL 258
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 259 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 302
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 303 PKMRPSFLEIISSIKEEMEPG 323
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 248 SSLDFVMSLKNLTDLSLRNALITGTIPF--------------------GIGELQMLQILD 287
++++ V L NL L L++ IT P I LQ ++ LD
Sbjct: 54 TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWV 347
L+ +T P L + +L+ L+L N ++ P NLQ + + + +S PL
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171
Query: 348 NSELQMNLAVNNFKFDISNISVFPGL 373
S+L A +N DIS ++ P L
Sbjct: 172 LSKLTTLKADDNKISDISPLASLPNL 197
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 179 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 230
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 231 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 274
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 275 PKMRPSFLEIISSIKEEMEPG 295
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 172 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 223
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 224 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 267
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 268 PKMRPSFLEIISSIKEEMEPG 288
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 178 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 229
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 230 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 273
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 274 PKMRPSFLEIISSIKEEMEPG 294
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 176 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 227
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 228 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 271
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 272 PKMRPSFLEIISSIKEEMEPG 292
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG-TLPDQKSENLQKIDLSHNHL 339
+DLS+N L + + LE L++ NN L L Q L+ +DLSHNHL
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 88 LQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146
L+ L L + N LP + NL+ L L S N +L L ++ +L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 147 NNFSGAL---PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
+ + P +L++L +D+ F +L ++Q +W NP+ P
Sbjct: 184 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 244 IDYLSRWLNKNSQKEQGSA 262
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 88 LQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146
L+ L L + N LP + NL+ L L S N +L L ++ +L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 147 NNFSGAL---PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
+ + P +L++L +D+ F +L ++Q +W NP+ P
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 243 IDYLSRWLNKNSQKEQGSA 261
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 447 NTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRG 506
N +DQV LYQT R + S Y G Y + L FAE F
Sbjct: 54 NPEDQV-------LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ-------- 98
Query: 507 RRVFDIYVQGTLRWKDFDISKEAG 530
++VFD+ V G KD DI G
Sbjct: 99 QKVFDVRVNGHTVVKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 447 NTQDQVTGTRTPKLYQTSRISAGSLRYYGLGLVNGPYNVSLLFAETNFPDPSTERWESRG 506
N +DQV LYQT R + S Y G Y + L FAE F
Sbjct: 50 NPEDQV-------LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ-------- 94
Query: 507 RRVFDIYVQGTLRWKDFDISKEAG 530
++VFD+ V G KD DI G
Sbjct: 95 QKVFDVRVNGHTVVKDLDIFDRVG 118
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 175 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 226
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 227 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 270
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 271 PKMRPSFLEIISSIKEEMEPG 291
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSY---GYLAPEYAMRGHLTEKADVF 700
N+ Y +L D ++ Y YK+ NS ++APE M G + +D++
Sbjct: 175 NVLVYDKLNVKISDLGLFREVYAADY---YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIW 231
Query: 701 SFGVVALEIIS 711
S+GVV E+ S
Sbjct: 232 SYGVVLWEVFS 242
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 655 TKDFNRSNKLGEGGYG--PVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
T+D ++ +GG G PV +++PE G T +DV+SFGVV EI +
Sbjct: 178 TRDIYETDYYRKGGKGLLPVR--------WMSPESLKDGVFTTYSDVWSFGVVLWEIATL 229
Query: 713 RASSDKSLDMEKI--YLLEWAWNLHENNQSFGLVDPTLTEFNDKEALRVIGVALLCTQTS 770
+ L E++ +++E GL+D D + + +C Q +
Sbjct: 230 AEQPYQGLSNEQVLRFVMEG-----------GLLDKP-----DNCPDMLFELMRMCWQYN 273
Query: 771 PMMRPPMSRVVAMLAGDIEVG 791
P MRP +++ + ++E G
Sbjct: 274 PKMRPSFLEIISSIKEEMEPG 294
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 88 LQYLTVLKIDQNFFTG-PLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGT 146
L+ L L + N LP + NL+ L L S N +L L ++ +L
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 147 NNFSGAL---PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP- 202
+ + P +L++L +D+ F +L ++Q +W NP+ P
Sbjct: 185 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Query: 203 -DFIGNWTKLKSLRFQGNS 220
D++ W S + QG++
Sbjct: 245 IDYLSRWLNKNSQKEQGSA 263
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 655 TKDFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
++++R+ K+ G +Y ++APE ++ +DV+S+GV+ E+++G
Sbjct: 163 AREWHRTTKMSAAG----------AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTG 210
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 286 LDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG-TLPDQKSENLQKIDLSHNHL 339
+DLS+N L + + LE L++ NN L L Q L+ +DLSHNHL
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 644 NIFGYAELRSATKDFNRSNKLGEGGYGPVYKVTANSY---GYLAPEYAMRGHLTEKADVF 700
N+ Y +L D ++ Y YK+ NS ++APE M G + +D++
Sbjct: 158 NVLVYDKLNVKISDLGLFREVYAADY---YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIW 214
Query: 701 SFGVVALEIIS 711
S+GVV E+ S
Sbjct: 215 SYGVVLWEVFS 225
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 41/193 (21%)
Query: 55 CNCTFDNGATCHITKLRVYGLNKKGVIPEELVTLQYLTVLKIDQNFFTGPLPSFIGNLSR 114
C + + T +++ + + K G E L+TL+ LT L I +N F P+P +
Sbjct: 382 CKGAWPSLQTLVLSQNHLRSMQKTG---EILLTLKNLTSLDISRNTF-HPMPDSCQWPEK 437
Query: 115 LMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNN---FSGALPPELGNLAKLEQLYIDSC 171
+ FL+ S +G + + L VL NN FS LP +L++LYI
Sbjct: 438 MRFLNLSS---TGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP-------RLQELYISRN 487
Query: 172 G------------------AGGEIPST----FAKLRNMQTLWASDNPFTGKIP--DFIGN 207
A ++ S F +L ++Q +W NP+ P D++
Sbjct: 488 KLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 547
Query: 208 WTKLKSLRFQGNS 220
W S + QG++
Sbjct: 548 WLNKNSQKEQGSA 560
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NL 329
+IP G+ ++ LDLSFN +T L +L+ L L ++ ++ D +L
Sbjct: 45 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 330 QKIDLSHNHLSGTFPLW---VNSELQMNLAVNNFKFDISNISVFPGLNCLQ 377
+ +DLS NHLS W ++S +NL N ++ + S+FP L LQ
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 152
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
LT L + I+ P +L ML++L+L N L+ T +L L L +NS+
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 120
Query: 319 GTL--PDQKSENLQKIDLSHNHLSGT 342
P K +NL +DLSHN LS T
Sbjct: 121 KIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
LT L + I+ P +L ML++L+L N L+ T +L L L +NS+
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 115
Query: 319 GTL--PDQKSENLQKIDLSHNHLSGT 342
P K +NL +DLSHN LS T
Sbjct: 116 KIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
LT L + I+ P +L ML++L+L N L+ T +L L L +NS+
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 319 GTL--PDQKSENLQKIDLSHNHLSGT 342
P K +NL +DLSHN LS T
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 170 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 202
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 204
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE A+ G T K+DV+SFG++ E+ + GR
Sbjct: 174 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 206
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
DF + + GY ++ PE M G T K D +SFGV+ EI S
Sbjct: 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
DF + + GY ++ PE M G T K D +SFGV+ EI S
Sbjct: 204 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 258
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 112 LSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYIDSC 171
L+ L +L+ +HN L LT L N L +L+ L +
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 172 GAGGEIPSTFAKLRNMQTLWASDNPFTGKIP--DFIGNW 208
F +L ++Q +W DNP+ P ++ W
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 249 SLDFVMSLKNLTDLSLRNALIT-----GTIPFGIGELQM-----------------LQIL 286
SL +M LT L+L A +T GT+P +G L + L +L
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS 340
D+SFN LT L + L+ L+L N L TLP + L+K+ L++N+L+
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 249 SLDFVMSLKNLTDLSLRNALIT-----GTIPFGIGELQM-----------------LQIL 286
SL +M LT L+L A +T GT+P +G L + L +L
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS 340
D+SFN LT L + L+ L+L N L TLP + L+K+ L++N+L+
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 249 SLDFVMSLKNLTDLSLRNALIT-----GTIPFGIGELQM-----------------LQIL 286
SL +M LT L+L A +T GT+P +G L + L +L
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 287 DLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSENLQKIDLSHNHLS 340
D+SFN LT L + L+ L+L N L TLP + L+K+ L++N+L+
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 430 WTAPEAALYGRFTIKSDVWSFGILLTELTT 459
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTT 377
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTT 207
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
++APE R K D++S G++A+E+I G
Sbjct: 183 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 214
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
++APE R K D++S G++A+E+I G
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
++APE R K D++S G++A+E+I G
Sbjct: 183 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 214
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE R T+ AD +SFGV+ E+++G
Sbjct: 192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
++APE R K D++S G++A+E+I G
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE R T+ AD +SFGV+ E+++G
Sbjct: 193 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 223
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE R T+ AD +SFGV+ E+++G
Sbjct: 192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGR 713
++APE R K D++S G++A+E+I G
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N L+
Sbjct: 150 LEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N L+
Sbjct: 150 LEKLSLANNQLT 161
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 105 LPSFIGN-LSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKL 163
LP+ + N L+ L +L+ S N L +L LA TN L +L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 164 EQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP--DFIGNW 208
+ L + F +L ++Q +W DNP+ P ++ W
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 173
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTT 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N L+
Sbjct: 150 LEKLSLANNQLT 161
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE A+ G T K+DV+SFG++ E+ +
Sbjct: 171 WTAPEAALYGRFTIKSDVWSFGILLTELTT 200
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N L+
Sbjct: 150 LEKLSLANNQLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 150
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N+L+
Sbjct: 151 LEKLSLANNNLT 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 33/239 (13%)
Query: 112 LSRLMFLSFSHNDF--SGPVPRELGNLKELTVLAFGTNNFSGALPPELGNLAKLEQLYID 169
L L L SH+D S +L NL+ L L N G +LE L +
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 170 SCGAGGEIP-STFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKSLRFQGNSFQ-GPIPX 227
+ P S F L ++ L S + L+ L QGNSFQ G I
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK 467
Query: 228 XXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTIPFGIGELQMLQILD 287
+++ + SL+ ++ L + LS+ G L+ + LD
Sbjct: 468 -------------TNLLQMVGSLE-ILILSSCNLLSIDQQAFHG--------LRNVNHLD 505
Query: 288 LSFNNLTGQIPATLFNIDSLEYLFLGNNSLS----GTLPDQKSENLQKIDLSHNHLSGT 342
LS N+LTG L ++ L YL + +N++ LP +++ I+LSHN L T
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSI--INLSHNPLDCT 561
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N+L+
Sbjct: 150 LEKLSLANNNLT 161
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSE--NL 329
+IP G+ ++ LDLSFN +T L +L+ L L ++ ++ D +L
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 330 QKIDLSHNHLSGTFPLW---VNSELQMNLAVNNFKFDISNISVFPGLNCLQ 377
+ +DLS NHLS W ++S +NL N ++ + S+FP L LQ
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 126
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YLAPE + T D +SFG +A E I+G
Sbjct: 190 YLAPELLEQKKYTVTVDYWSFGTLAFECITG 220
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YLAPE + T D +SFG +A E I+G
Sbjct: 189 YLAPELLEQKKYTVTVDYWSFGTLAFECITG 219
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 53/162 (32%), Gaps = 24/162 (14%)
Query: 154 PPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLKS 213
P L L L++D CG P F L +Q L+ DN + + L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 214 LRFQGNSFQGPIPXXXXXXXXXXXXQMSDIYNVSSSLDFVMSLKNLTDLSLRNALITGTI 273
L GN IP S L +L L L +
Sbjct: 157 LFLHGNR----IP--------------------SVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 274 PFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNN 315
P +L L L L NNL+ L + SL+YL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 280 LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPDQKSENLQKID---LSH 336
L LQ L L NNL T ++ +L +LFL N + ++P+ L +D L
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQ 185
Query: 337 NHLSGTFP 344
NH++ P
Sbjct: 186 NHVARVHP 193
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYGP-VYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 181 RVAKIGDFGMAQDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 240
Query: 711 S 711
S
Sbjct: 241 S 241
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 265 RNALITGT------IPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
RN + G+ IP G+ E ++ LDLS N +T + L +L+ L L +N ++
Sbjct: 32 RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89
Query: 319 GTLPDQKSE--NLQKIDLSHNHLSGTFPLW---VNSELQMNLAVNNFKFDISNISVFPGL 373
D S +L+ +DLS+N+LS W ++S +NL N +K + S+F L
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148
Query: 374 NCLQ 377
LQ
Sbjct: 149 TKLQ 152
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 180 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 239
Query: 711 S 711
S
Sbjct: 240 S 240
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 172 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 231
Query: 711 S 711
S
Sbjct: 232 S 232
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 180 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 239
Query: 711 S 711
S
Sbjct: 240 S 240
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 181 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 240
Query: 711 S 711
S
Sbjct: 241 S 241
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 197 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 256
Query: 711 S 711
S
Sbjct: 257 S 257
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
++APE + KAD++S G+ A+E+ G + M ++L+
Sbjct: 186 WMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLI 232
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 301 LFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNF 360
L ++ LE L+LGNN ++ + L + L N +S PL ++LQ NL ++
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ-NLYLS-- 183
Query: 361 KFDISNISVFPGLNCL 376
K IS++ GL L
Sbjct: 184 KNHISDLRALAGLKNL 199
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 181 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 240
Query: 711 S 711
S
Sbjct: 241 S 241
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 187 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 246
Query: 711 S 711
S
Sbjct: 247 S 247
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 195 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 254
Query: 711 S 711
S
Sbjct: 255 S 255
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 207 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 266
Query: 711 S 711
S
Sbjct: 267 S 267
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 195 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 254
Query: 711 S 711
S
Sbjct: 255 S 255
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
++APE + KAD++S G+ A+E+ G + M+ ++L+
Sbjct: 185 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI 231
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 660 RSNKLGEGGYG-PVYKVTANSYG--------YLAPEYAMRGHLTEKADVFSFGVVALEII 710
R K+G+ G +Y+ + G ++ PE M G T K D +SFGV+ EI
Sbjct: 195 RVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 254
Query: 711 S 711
S
Sbjct: 255 S 255
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE +RG EK DV+S GV+ ++SG
Sbjct: 189 YIAPE-VLRGTYDEKCDVWSAGVILYILLSG 218
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 265 RNALITGT------IPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
RN + G+ IP G+ E ++ LDLS N +T + L +L+ L L +N ++
Sbjct: 6 RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 63
Query: 319 GTLPDQKSE--NLQKIDLSHNHLSGTFPLW---VNSELQMNLAVNNFKFDISNISVFPGL 373
D S +L+ +DLS+N+LS W ++S +NL N +K + S+F L
Sbjct: 64 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 122
Query: 374 NCLQ 377
LQ
Sbjct: 123 TKLQ 126
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 280 LQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSG--TLPDQKSENLQKIDLSHN 337
L +L++L+L N L+ T +L L L +NS+ + P + +NL K+DLSHN
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 338 HLSGT 342
LS T
Sbjct: 132 GLSST 136
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE +RG EK DV+S GV+ ++SG
Sbjct: 189 YIAPE-VLRGTYDEKCDVWSAGVILYILLSG 218
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 272 TIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLSGTLPD---QKSEN 328
++P L L +LD+SFN LT L + L+ L+L N L TLP +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 329 LQKIDLSHNHLS 340
L+K+ L++N L+
Sbjct: 150 LEKLSLANNDLT 161
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
++APE + KAD++S G+ A+E+ G + M+ ++L+
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI 216
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
++APE + KAD++S G+ A+E+ G + M+ ++L+
Sbjct: 170 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI 216
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
Y+APE +RG EK DV+S GV+ ++SG
Sbjct: 189 YIAPE-VLRGTYDEKCDVWSAGVILYILLSG 218
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 93 VLKIDQNFFTGPLPSFIGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTNNFSGA 152
+L + N T P +L L L N +L +LTVL GTN +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 153 LPPELGNLAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIPDFIGNWTKLK 212
L L++L++ C E+P +L ++ L N IP G + +L
Sbjct: 104 PSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKS-IPH--GAFDRLS 159
Query: 213 SL 214
SL
Sbjct: 160 SL 161
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 255 SLKNLTDLSLRNALITGTIPFGI-GELQMLQILDLSFNNLTGQIPATLFN-IDSLEYLFL 312
SL NL +L L + + G +P G+ L L +LDL N LT +P+ +F+ + L+ LF+
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 313 GNNSLSGTLPD--QKSENLQKIDLSHNHL 339
N L+ LP ++ +L + L N L
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
++APE + KAD++S G+ A+E+ G + M+ ++L+
Sbjct: 190 WMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI 236
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 160 LAKLEQLYIDSCGAGGEIPSTFAKLRNMQTLWASDNPFTGKIP--DFIGNWTKLKSLRFQ 217
L L++L +D+ F +L ++Q +W NP+ P D++ W S + Q
Sbjct: 322 LTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 381
Query: 218 GNS 220
G++
Sbjct: 382 GSA 384
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 301 LFNIDSLEYLFLGNNSLSGTLPDQKSENLQKIDLSHNHLSGTFPLWVNSELQMNLAVNNF 360
L ++ LE L+LGNN ++ + L + L N +S PL ++LQ NL ++
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ-NLYLS-- 186
Query: 361 KFDISNISVFPGLN-----------CLQR--NFTCNRNAPQ-CKLPSLCCLHPEMRADNI 406
K IS++ GL CL + N N P K + PE+ +D+
Sbjct: 187 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246
Query: 407 VYEGDN 412
YE N
Sbjct: 247 DYEKPN 252
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE G T K+DV+SFG++ +EI++
Sbjct: 335 WTAPEAINFGSFTIKSDVWSFGILLMEIVT 364
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GR 713
+ APE G T K+DV+SFG++ +EI++ GR
Sbjct: 178 WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 210
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE G T K+DV+SFG++ +EI++
Sbjct: 351 WTAPEAINFGSFTIKSDVWSFGILLMEIVT 380
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 674 KVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
K A + ++APE EK+DV+SFGV+ E+ +
Sbjct: 197 KXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT 234
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQS 740
+ +PE + K+DV+SFGV+ E+ S G+ + + E + + +
Sbjct: 173 WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV---------EDISTG 223
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791
F L P L + V + C + P RP SR++ LA E G
Sbjct: 224 FRLYKPRLA------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAESG 268
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 109 IGNLSRLMFLSFSHNDFSGPVPRELGNLKELTVLAFGTN 147
+ N R+ LS + G VP +G L EL VL+FGT+
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 657 DFNRSNKLGEGGYGPVYKVTANSYGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRAS 715
DF S + +G Y + + APE G + ++DV+SFG++ E S AS
Sbjct: 256 DFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGAS 314
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQS 740
+ +PE + K+DV+SFGV+ E+ S G+ + + E + + +
Sbjct: 171 WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV---------EDISTG 221
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791
F L P L + V + C + P RP SR++ LA E G
Sbjct: 222 FRLYKPRLA------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAESG 266
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIISG 712
YL+PE A + ++DV+S G V E+++G
Sbjct: 202 YLSPEQARGDSVDARSDVYSLGCVLYEVLTG 232
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQS 740
+ +PE + K+DV+SFGV+ E+ S G+ + + E + + +
Sbjct: 168 WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV---------EDISTG 218
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791
F L P L + V + C + P RP SR++ LA E G
Sbjct: 219 FRLYKPRLA------STHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAESG 263
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 200 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 258
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS-GRASSDKSLDMEKIYLLEWAWNLHENNQS 740
+ +PE + K+DV+SFGV+ E+ S G+ + + E + + +
Sbjct: 170 WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV---------EDISTG 220
Query: 741 FGLVDPTLTEFNDKEALRVIGVALLCTQTSPMMRPPMSRVVAMLAGDIEVG 791
F L P L + V + C + P RP SR++ LA E G
Sbjct: 221 FRLYKPRLA------STHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAESG 265
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 259 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 317
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 259 LTDLSLRNALITGTIPFGIGELQMLQILDLSFNNLTGQIPATLFNIDSLEYLFLGNNSLS 318
L +L L + G +P G+ L +L+ L LS N+ + N SL +L++ N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 319 ---GTLPDQKSENLQKIDLSHNHLSGT 342
G +K NLQ +DLSHN + +
Sbjct: 336 LHLGVGCLEKLGNLQTLDLSHNDIEAS 362
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 202 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 260
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 213 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 205 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 263
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE G T K+DV+SFG++ EI++
Sbjct: 184 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 213
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 213 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 213 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 213 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 673 YKVTANS---YGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRASSDKSLDMEKIYLL 728
YK T N ++APE T ++DV+SFGV+ EI + S + +E+++ L
Sbjct: 213 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 682 YLAPEYAMRGHLTEKADVFSFGVVALEIIS 711
+ APE G T K+DV+SFG++ EI++
Sbjct: 178 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,616,506
Number of Sequences: 62578
Number of extensions: 1172622
Number of successful extensions: 3563
Number of sequences better than 100.0: 253
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 2948
Number of HSP's gapped (non-prelim): 512
length of query: 866
length of database: 14,973,337
effective HSP length: 107
effective length of query: 759
effective length of database: 8,277,491
effective search space: 6282615669
effective search space used: 6282615669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)