Query 038021
Match_columns 675
No_of_seqs 314 out of 982
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 1.2E-17 4.1E-22 143.2 6.8 64 400-463 7-70 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 9.2E-18 3.2E-22 147.0 6.0 61 405-465 10-70 (89)
3 3k2a_A Homeobox protein MEIS2; 99.7 4.4E-17 1.5E-21 134.6 6.0 61 405-465 3-63 (67)
4 1x2n_A Homeobox protein pknox1 99.7 8.9E-17 3.1E-21 133.8 7.2 64 400-463 7-70 (73)
5 1du6_A PBX1, homeobox protein 99.6 6.3E-16 2.1E-20 125.5 6.9 62 400-461 3-64 (64)
6 1puf_B PRE-B-cell leukemia tra 99.6 1.3E-15 4.4E-20 126.8 7.3 63 401-463 2-64 (73)
7 1b72_B Protein (PBX1); homeodo 99.6 1.4E-15 4.8E-20 130.3 7.4 63 401-463 2-64 (87)
8 1k61_A Mating-type protein alp 99.6 1.8E-15 6.3E-20 121.3 7.0 59 403-461 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 3E-15 1E-19 128.0 6.8 62 402-463 4-65 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 5.5E-15 1.9E-19 127.1 7.7 60 400-459 27-86 (87)
11 2ecc_A Homeobox and leucine zi 99.4 1.3E-13 4.5E-18 117.5 6.5 59 402-463 5-63 (76)
12 1akh_A Protein (mating-type pr 99.4 3.8E-13 1.3E-17 108.0 6.4 57 400-459 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.4 7.6E-13 2.6E-17 108.0 6.9 60 400-462 3-62 (66)
14 2dmu_A Homeobox protein goosec 99.3 1.9E-12 6.4E-17 106.9 7.6 59 400-461 7-65 (70)
15 1ig7_A Homeotic protein MSX-1; 99.3 1.8E-12 6.1E-17 103.0 7.1 57 401-460 1-57 (58)
16 2da4_A Hypothetical protein DK 99.3 5.7E-13 1.9E-17 112.8 4.4 62 400-461 8-70 (80)
17 2hdd_A Protein (engrailed home 99.3 1.7E-12 5.8E-17 104.4 6.7 58 400-460 3-60 (61)
18 2cra_A Homeobox protein HOX-B1 99.3 2.4E-12 8.2E-17 106.4 7.7 59 400-461 7-65 (70)
19 2dmq_A LIM/homeobox protein LH 99.3 3.3E-12 1.1E-16 107.8 8.5 59 400-461 7-65 (80)
20 2e1o_A Homeobox protein PRH; D 99.3 2.2E-12 7.6E-17 106.6 7.3 59 400-461 7-65 (70)
21 1jgg_A Segmentation protein EV 99.3 2.3E-12 7.8E-17 103.4 7.0 58 401-461 2-59 (60)
22 2da2_A Alpha-fetoprotein enhan 99.3 2.8E-12 9.7E-17 105.6 7.7 59 400-461 7-65 (70)
23 2da1_A Alpha-fetoprotein enhan 99.3 2E-12 6.9E-17 106.5 6.6 59 400-461 7-65 (70)
24 2da3_A Alpha-fetoprotein enhan 99.3 2.3E-12 7.9E-17 108.4 6.8 59 400-461 17-75 (80)
25 2h1k_A IPF-1, pancreatic and d 99.3 3E-12 1E-16 103.8 7.0 59 400-461 3-61 (63)
26 2djn_A Homeobox protein DLX-5; 99.3 2.4E-12 8.2E-17 106.4 6.5 59 400-461 7-65 (70)
27 2dmt_A Homeobox protein BARH-l 99.3 3.7E-12 1.3E-16 107.9 7.8 59 400-461 17-75 (80)
28 1fjl_A Paired protein; DNA-bin 99.3 3.8E-12 1.3E-16 107.9 7.3 59 400-461 18-76 (81)
29 2k40_A Homeobox expressed in E 99.3 2.8E-12 9.6E-17 105.0 6.2 58 401-461 2-59 (67)
30 2vi6_A Homeobox protein nanog; 99.3 4.2E-12 1.4E-16 102.5 7.0 58 400-460 3-60 (62)
31 2dms_A Homeobox protein OTX2; 99.3 4.7E-12 1.6E-16 107.1 7.3 59 400-461 7-65 (80)
32 3rkq_A Homeobox protein NKX-2. 99.3 4.7E-12 1.6E-16 100.0 6.7 57 400-459 2-58 (58)
33 2l7z_A Homeobox protein HOX-A1 99.3 6.7E-12 2.3E-16 104.7 7.6 59 400-461 7-65 (73)
34 1nk2_P Homeobox protein VND; h 99.3 9.4E-12 3.2E-16 104.7 8.1 59 400-461 9-67 (77)
35 3a02_A Homeobox protein arista 99.3 6.2E-12 2.1E-16 100.8 6.7 56 403-461 2-57 (60)
36 1wh5_A ZF-HD homeobox family p 99.3 6.8E-12 2.3E-16 107.1 7.0 61 400-460 17-78 (80)
37 1ahd_P Antennapedia protein mu 99.3 6.3E-12 2.2E-16 103.6 6.4 59 400-461 2-60 (68)
38 2dn0_A Zinc fingers and homeob 99.3 7.9E-12 2.7E-16 104.9 7.0 59 400-461 8-66 (76)
39 2cue_A Paired box protein PAX6 99.2 9.7E-12 3.3E-16 105.3 7.5 60 400-462 7-66 (80)
40 1zq3_P PRD-4, homeotic bicoid 99.2 7.2E-12 2.5E-16 103.1 6.3 59 400-461 2-60 (68)
41 1ftt_A TTF-1 HD, thyroid trans 99.2 9.8E-12 3.3E-16 102.3 7.0 58 401-461 3-60 (68)
42 2kt0_A Nanog, homeobox protein 99.2 1.4E-11 4.7E-16 104.9 7.7 59 400-461 22-80 (84)
43 1yz8_P Pituitary homeobox 2; D 99.2 3.7E-12 1.3E-16 104.7 3.9 59 400-461 3-61 (68)
44 1puf_A HOX-1.7, homeobox prote 99.2 1.8E-11 6.2E-16 103.0 8.0 60 400-462 13-72 (77)
45 3nau_A Zinc fingers and homeob 99.2 9.5E-12 3.2E-16 103.6 5.9 54 407-463 11-64 (66)
46 2cuf_A FLJ21616 protein; homeo 99.2 2E-11 6.8E-16 106.6 7.8 59 400-461 7-80 (95)
47 2ecb_A Zinc fingers and homeob 99.2 1.1E-11 3.7E-16 108.5 6.1 56 403-461 14-69 (89)
48 3nar_A ZHX1, zinc fingers and 99.2 2E-11 6.8E-16 107.0 7.8 66 400-468 25-90 (96)
49 2m0c_A Homeobox protein arista 99.2 2E-11 6.8E-16 101.4 7.3 59 400-461 9-67 (75)
50 1b8i_A Ultrabithorax, protein 99.2 1.7E-11 5.9E-16 104.2 6.7 59 400-461 20-78 (81)
51 2hi3_A Homeodomain-only protei 99.2 2.1E-11 7.2E-16 101.6 7.0 59 401-461 3-61 (73)
52 2da5_A Zinc fingers and homeob 99.2 2.5E-11 8.7E-16 101.8 7.5 57 402-461 9-65 (75)
53 3a03_A T-cell leukemia homeobo 99.2 2E-11 6.7E-16 96.9 6.3 53 406-461 3-55 (56)
54 1uhs_A HOP, homeodomain only p 99.2 2.2E-11 7.5E-16 101.1 6.8 58 402-461 3-60 (72)
55 2ly9_A Zinc fingers and homeob 99.2 3.2E-11 1.1E-15 100.3 7.6 59 400-461 6-64 (74)
56 3a01_A Homeodomain-containing 99.2 2.5E-11 8.4E-16 106.0 6.9 61 400-463 17-77 (93)
57 2d5v_A Hepatocyte nuclear fact 99.2 2.2E-11 7.6E-16 115.6 7.1 59 400-461 97-155 (164)
58 3d1n_I POU domain, class 6, tr 99.2 3.1E-11 1.1E-15 113.5 7.3 58 400-460 93-150 (151)
59 2r5y_A Homeotic protein sex co 99.2 3E-11 1E-15 104.0 6.0 59 400-461 28-86 (88)
60 1b72_A Protein (homeobox prote 99.1 4.5E-11 1.5E-15 104.8 6.1 59 400-461 34-92 (97)
61 2dmp_A Zinc fingers and homeob 99.1 7.6E-11 2.6E-15 102.3 7.0 56 403-461 16-71 (89)
62 1wh7_A ZF-HD homeobox family p 99.1 6.1E-11 2.1E-15 101.4 6.0 60 400-460 17-78 (80)
63 2e19_A Transcription factor 8; 99.1 1.1E-10 3.7E-15 95.8 6.3 55 403-460 6-60 (64)
64 1au7_A Protein PIT-1, GHF-1; c 99.1 1.9E-10 6.4E-15 108.1 7.2 59 400-461 87-145 (146)
65 1e3o_C Octamer-binding transcr 99.0 2.1E-10 7.1E-15 109.1 7.1 59 400-461 101-159 (160)
66 2xsd_C POU domain, class 3, tr 99.0 2.2E-10 7.5E-15 109.7 6.5 59 400-461 99-157 (164)
67 2cqx_A LAG1 longevity assuranc 99.0 1.4E-10 4.9E-15 97.1 4.4 57 402-461 10-67 (72)
68 2da6_A Hepatocyte nuclear fact 99.0 4.2E-10 1.4E-14 100.9 7.3 61 400-463 6-87 (102)
69 2l9r_A Homeobox protein NKX-3. 99.0 4.1E-10 1.4E-14 94.1 6.4 52 407-461 11-62 (69)
70 1wi3_A DNA-binding protein SAT 99.0 8.8E-10 3E-14 92.6 7.1 60 399-460 6-65 (71)
71 3l1p_A POU domain, class 5, tr 98.9 4.3E-10 1.5E-14 106.5 4.7 59 400-461 96-154 (155)
72 1lfb_A Liver transcription fac 98.9 7.9E-10 2.7E-14 98.3 5.8 59 400-461 9-88 (99)
73 1x2m_A LAG1 longevity assuranc 98.9 1.3E-09 4.3E-14 90.3 5.1 51 409-461 9-59 (64)
74 2h8r_A Hepatocyte nuclear fact 98.8 5.4E-09 1.8E-13 104.9 6.6 56 400-458 142-218 (221)
75 1mh3_A Maltose binding-A1 home 98.8 4.4E-09 1.5E-13 109.2 5.9 54 403-459 368-421 (421)
76 1ic8_A Hepatocyte nuclear fact 98.7 6.4E-09 2.2E-13 102.5 4.0 58 400-460 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.6 3.5E-08 1.2E-12 83.2 6.0 46 409-457 14-59 (71)
78 2nzz_A Penetratin conjugated G 95.2 0.0035 1.2E-07 46.8 0.0 20 445-464 1-20 (37)
79 2ys9_A Homeobox and leucine zi 93.3 0.055 1.9E-06 45.6 3.4 45 407-454 13-57 (70)
80 3hug_A RNA polymerase sigma fa 68.4 5.7 0.00019 33.2 4.6 48 407-462 38-85 (92)
81 1tty_A Sigma-A, RNA polymerase 67.9 5.8 0.0002 33.0 4.5 59 406-468 18-76 (87)
82 1hlv_A CENP-B, major centromer 63.7 14 0.00049 32.2 6.5 50 402-457 3-52 (131)
83 1ku3_A Sigma factor SIGA; heli 62.5 6.4 0.00022 31.5 3.6 54 406-463 10-64 (73)
84 2glo_A Brinker CG9653-PA; prot 58.9 15 0.0005 28.4 5.0 48 403-454 2-49 (59)
85 3t72_q RNA polymerase sigma fa 58.8 19 0.00067 31.3 6.3 62 406-471 19-80 (99)
86 3mzy_A RNA polymerase sigma-H 58.3 9.9 0.00034 33.3 4.5 48 406-462 109-156 (164)
87 2o8x_A Probable RNA polymerase 55.3 11 0.00036 29.2 3.7 49 406-462 15-63 (70)
88 2elh_A CG11849-PA, LD40883P; s 52.9 34 0.0012 28.3 6.7 46 400-453 16-61 (87)
89 2p7v_B Sigma-70, RNA polymeras 51.6 8 0.00027 30.4 2.4 54 406-463 5-58 (68)
90 1s7o_A Hypothetical UPF0122 pr 51.2 21 0.00072 31.6 5.4 50 406-463 22-71 (113)
91 1tc3_C Protein (TC3 transposas 49.5 22 0.00075 24.8 4.3 43 405-455 4-46 (51)
92 1rp3_A RNA polymerase sigma fa 46.4 14 0.00049 34.5 3.7 49 406-462 187-235 (239)
93 1fse_A GERE; helix-turn-helix 45.1 32 0.0011 26.6 5.1 55 402-465 7-61 (74)
94 1xsv_A Hypothetical UPF0122 pr 43.4 26 0.00087 30.9 4.6 49 407-463 26-74 (113)
95 1or7_A Sigma-24, RNA polymeras 41.1 22 0.00077 32.3 4.1 48 407-462 141-188 (194)
96 1je8_A Nitrate/nitrite respons 40.5 31 0.001 28.3 4.4 53 406-467 21-73 (82)
97 1x3u_A Transcriptional regulat 37.9 30 0.001 27.4 3.8 53 407-468 17-69 (79)
98 1wlx_A Alpha-actinin 4; three- 34.3 1.4E+02 0.0047 27.7 8.1 70 279-350 43-115 (129)
99 3c57_A Two component transcrip 33.3 47 0.0016 27.9 4.6 48 405-461 26-73 (95)
100 3lsg_A Two-component response 33.1 62 0.0021 26.9 5.3 42 410-454 2-43 (103)
101 1p4w_A RCSB; solution structur 31.0 58 0.002 28.1 4.8 49 404-461 32-80 (99)
102 2rnj_A Response regulator prot 29.4 39 0.0013 28.0 3.3 52 406-466 29-80 (91)
103 2q1z_A RPOE, ECF SIGE; ECF sig 27.2 28 0.00094 31.5 2.2 47 407-461 136-182 (184)
104 1l9z_H Sigma factor SIGA; heli 26.7 67 0.0023 35.0 5.4 54 406-463 375-429 (438)
105 1jko_C HIN recombinase, DNA-in 25.0 59 0.002 23.0 3.2 41 406-454 5-45 (52)
106 1hlv_A CENP-B, major centromer 24.9 1.7E+02 0.0059 25.1 6.9 57 401-458 67-130 (131)
107 2a6c_A Helix-turn-helix motif; 24.8 67 0.0023 25.8 3.9 24 433-456 34-57 (83)
108 2q0o_A Probable transcriptiona 23.3 66 0.0023 30.9 4.2 49 404-461 173-221 (236)
109 2rn7_A IS629 ORFA; helix, all 22.7 1.7E+02 0.0058 24.5 6.2 50 404-454 4-54 (108)
110 2jn6_A Protein CGL2762, transp 22.3 61 0.0021 26.9 3.3 46 404-455 3-48 (97)
111 3b7h_A Prophage LP1 protein 11 22.3 66 0.0022 24.9 3.3 23 433-455 23-45 (78)
112 3mn2_A Probable ARAC family tr 21.8 97 0.0033 25.9 4.5 40 411-454 3-42 (108)
113 1gs9_A Apolipoprotein E, APOE4 21.6 2.4E+02 0.0081 26.8 7.5 34 283-316 94-127 (165)
114 2xi8_A Putative transcription 21.1 46 0.0016 24.7 2.0 23 433-455 17-39 (66)
115 3bd1_A CRO protein; transcript 21.1 50 0.0017 26.2 2.4 23 433-455 14-36 (79)
116 2r1j_L Repressor protein C2; p 20.8 47 0.0016 24.8 2.1 24 433-456 21-44 (68)
117 3clo_A Transcriptional regulat 20.5 1.1E+02 0.0038 29.8 5.2 54 405-467 196-249 (258)
118 1iuf_A Centromere ABP1 protein 20.5 98 0.0034 28.0 4.5 48 401-454 6-60 (144)
119 1zug_A Phage 434 CRO protein; 20.1 48 0.0017 25.1 2.0 24 433-456 19-42 (71)
120 3mkl_A HTH-type transcriptiona 20.1 1.1E+02 0.0036 26.4 4.4 43 408-454 5-47 (120)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=143.19 Aligned_cols=64 Identities=42% Similarity=0.800 Sum_probs=60.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
.+|+|+.|++.++.+|+.||.+|..||||+.++|..||.+|||+..||.+||+|+|+|.|++++
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 5577778999999999999999999999999999999999999999999999999999998866
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.70 E-value=9.2e-18 Score=147.01 Aligned_cols=61 Identities=49% Similarity=0.861 Sum_probs=58.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 038021 405 RGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEE 465 (675)
Q Consensus 405 R~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~ 465 (675)
.-||++++.+|++||.+|+.||||++++|..||++|||+..||+|||+|+|+|.|++++++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 4599999999999999999999999999999999999999999999999999999987754
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4.4e-17 Score=134.61 Aligned_cols=61 Identities=51% Similarity=0.967 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 038021 405 RGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEE 465 (675)
Q Consensus 405 R~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~ 465 (675)
+.||++++.+|+.||.+|+.||||+..+|..||.+|||+..||.+||+|+|+|.|++++++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 5699999999999999999999999999999999999999999999999999999998854
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=8.9e-17 Score=133.77 Aligned_cols=64 Identities=42% Similarity=0.755 Sum_probs=60.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
.+|+|..|++.++.+|+.||.+|..+|||+.++|..||.++||+..||.+||+|+|+|.|++++
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 5667778999999999999999999999999999999999999999999999999999999876
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=6.3e-16 Score=125.46 Aligned_cols=62 Identities=37% Similarity=0.646 Sum_probs=58.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|+.|++.++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35677889999999999999999999999999999999999999999999999999998873
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=1.3e-15 Score=126.75 Aligned_cols=63 Identities=38% Similarity=0.680 Sum_probs=59.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
+|+|+.|++.++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 577888999999999999999999999999999999999999999999999999999987643
No 7
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.59 E-value=1.4e-15 Score=130.31 Aligned_cols=63 Identities=38% Similarity=0.680 Sum_probs=59.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
+|+|+.|++.++.+|+.||.+|..+|||+.++|..||+.+||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 577888999999999999999999999999999999999999999999999999999988765
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=121.28 Aligned_cols=59 Identities=25% Similarity=0.438 Sum_probs=55.6
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+++.|+++++.+|+.||..|+++|||+.+++..||+.+||+..||.+||+|+|+|.++.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35679999999999999999999999999999999999999999999999999998763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=3e-15 Score=128.05 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=57.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
++++.|++.++.+|+.||..|+.+|||+..++..||..+||+..||.+||+|+|+|.++..+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 34445999999999999999999999999999999999999999999999999999998755
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=5.5e-15 Score=127.10 Aligned_cols=60 Identities=25% Similarity=0.405 Sum_probs=56.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW 459 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk 459 (675)
++|+|..|+++++.+|+.||..|+.+|||+..+|..||+.+||+..||.+||+|+|+|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 455666799999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.3e-13 Score=117.54 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=55.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
++|+.|+++++.+|+.||.. +|||+.+++..||+.|||+..||.+||+|+|.|.|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56778999999999999998 699999999999999999999999999999999887755
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.39 E-value=3.8e-13 Score=107.96 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=47.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW 459 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk 459 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4566778999999999999998 69999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.36 E-value=7.6e-13 Score=108.04 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=55.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 5678888999999999999998 79999999999999999999999999999999988753
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=106.86 Aligned_cols=59 Identities=24% Similarity=0.404 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 5677888999999999999988 7999999999999999999999999999999998764
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.8e-12 Score=103.03 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467788999999999999988 799999999999999999999999999999998765
No 16
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.7e-13 Score=112.76 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=56.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEH-FLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH-~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+.+++.+|+.||..+ ..+|||+..++..||+.+||+..||.+||+|+|+|.++.
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 55677789999999999999885 555999999999999999999999999999999998764
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.33 E-value=1.7e-12 Score=104.45 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=51.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4577888999999999999988 799999999999999999999999999999999876
No 18
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2.4e-12 Score=106.37 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=55.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 5677788999999999999988 7999999999999999999999999999999998875
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=107.78 Aligned_cols=59 Identities=24% Similarity=0.445 Sum_probs=55.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 5678888999999999999988 7999999999999999999999999999999998875
No 20
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=2.2e-12 Score=106.57 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+++++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 4567788999999999999988 7999999999999999999999999999999998765
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=2.3e-12 Score=103.37 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467888999999999999988 7999999999999999999999999999999998763
No 22
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=105.62 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=55.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 5677788999999999999988 7999999999999999999999999999999998875
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.31 E-value=2e-12 Score=106.50 Aligned_cols=59 Identities=19% Similarity=0.429 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 5677888999999999999988 7999999999999999999999999999999998764
No 24
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=108.41 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+.+++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.+|.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 5677778999999999999998 6999999999999999999999999999999998774
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.30 E-value=3e-12 Score=103.79 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=53.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4577888999999999999988 7999999999999999999999999999999998764
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=106.36 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.+|.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 5677788999999999999977 7999999999999999999999999999999998874
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=107.91 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=55.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.+|.
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 5677778999999999999998 7999999999999999999999999999999998875
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.29 E-value=3.8e-12 Score=107.95 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 5677778999999999999988 7999999999999999999999999999999998775
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=104.96 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=54.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+|+|..|++.++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 577888999999999999977 7999999999999999999999999999999998775
No 30
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.29 E-value=4.2e-12 Score=102.46 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=51.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4567788999999999999988 799999999999999999999999999999999876
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=4.7e-12 Score=107.12 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 5677788999999999999998 7999999999999999999999999999999998764
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=99.96 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW 459 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk 459 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4567788999999999999986 79999999999999999999999999999999864
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.27 E-value=6.7e-12 Score=104.74 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 5677778999999999999988 7999999999999999999999999999999998875
No 34
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.26 E-value=9.4e-12 Score=104.69 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=54.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 5566778999999999999988 7999999999999999999999999999999998875
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.26 E-value=6.2e-12 Score=100.83 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=49.5
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3567999999999999988 7999999999999999999999999999999998874
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.26 E-value=6.8e-12 Score=107.08 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 400 AWRPQRGLPESSVSILRAWLFE-HFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~e-H~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
.+|+|..|+.+++.+|+.+|.. |+.+|||+..++..||+.+||+..||++||+|+|.+.++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 5677778999999999998885 577899999999999999999999999999999999875
No 37
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.25 E-value=6.3e-12 Score=103.56 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 3567788999999999999988 7999999999999999999999999999999998774
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.9e-12 Score=104.91 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=54.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
..+.|+.|+++++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3445777999999999999988 7999999999999999999999999999999998874
No 39
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=9.7e-12 Score=105.32 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=55.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 5677788999999999999987 79999999999999999999999999999999998763
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.25 E-value=7.2e-12 Score=103.08 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4677888999999999999987 7999999999999999999999999999999998775
No 41
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.24 E-value=9.8e-12 Score=102.28 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=54.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 567778999999999999988 7999999999999999999999999999999998764
No 42
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=104.89 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5677778999999999999988 7999999999999999999999999999999998874
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.23 E-value=3.7e-12 Score=104.65 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 4577788999999999999987 7999999999999999999999999999999998764
No 44
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.23 E-value=1.8e-11 Score=102.97 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=55.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 5567778999999999999988 79999999999999999999999999999999988753
No 45
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.22 E-value=9.5e-12 Score=103.62 Aligned_cols=54 Identities=28% Similarity=0.557 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
-+++++.+|+.+|.. +|||+..++..||+.|||+..||.+||+|+|.|.++..+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 489999999999999 699999999999999999999999999999999887644
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=2e-11 Score=106.63 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTG---------------LTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TG---------------LS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|++.++.+|+.||.+ +|||+..++..||..++ |+..||.+||+|+|.|.++.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 5677778999999999999999 79999999999999999 99999999999999998775
No 47
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=1.1e-11 Score=108.50 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+.+.++.+++.+|+.||.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 4457899999999999988 7999999999999999999999999999999987654
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=106.97 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=58.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYK 468 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~k 468 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+++||+..||.+||+|+|.|.||..++-+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~~ 90 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 90 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHHH
Confidence 4567788999999999999988 79999999999999999999999999999999999887765544
No 49
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=101.35 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 4566778999999999999988 7999999999999999999999999999999998774
No 50
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.20 E-value=1.7e-11 Score=104.25 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=52.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4577788999999999999988 7999999999999999999999999999999998774
No 51
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.20 E-value=2.1e-11 Score=101.60 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.++|..|++.++.+|+.+|... +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3567789999999999999831 6999999999999999999999999999999998774
No 52
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=101.84 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
++|+.|+.+++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 55667999999999999988 7999999999999999999999999999999998764
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=96.91 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.|+++++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.+|.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 4889999999999988 7999999999999999999999999999999998763
No 54
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=2.2e-11 Score=101.10 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
++|+.|+..++.+|+.+|.. .+|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 46778999999999999973 16999999999999999999999999999999998774
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.19 E-value=3.2e-11 Score=100.32 Aligned_cols=59 Identities=20% Similarity=0.472 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.++.|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4567788999999999999998 7999999999999999999999999999999998874
No 56
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.18 E-value=2.5e-11 Score=106.03 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=55.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 4567778999999999999988 799999999999999999999999999999999887643
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.18 E-value=2.2e-11 Score=115.56 Aligned_cols=59 Identities=31% Similarity=0.397 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|+|.++.
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 5677788999999999999999 5999999999999999999999999999999999875
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.17 E-value=3.1e-11 Score=113.54 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=54.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
++|+|..|+..++.+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 5566777999999999999998 799999999999999999999999999999999876
No 59
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.15 E-value=3e-11 Score=104.03 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=53.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.+|.
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 5677888999999999999987 7999999999999999999999999999999998764
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.13 E-value=4.5e-11 Score=104.76 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 5677888999999999999987 7999999999999999999999999999999998764
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=7.6e-11 Score=102.26 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=51.1
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
+++.++.+++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 4455999999999999988 7999999999999999999999999999999887653
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.11 E-value=6.1e-11 Score=101.44 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFL--HPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~--nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
.+|+|..|+.+++.+|+ -|.+++. +|||+..++..||..+||++.||++||+|+|.+.++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 56777789999999999 5777544 899999999999999999999999999999999875
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=95.83 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=50.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
++.+..++++.+|+.+|.. ++||+..++..||+.+||+..||.+||+|+|.|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3455679999999999976 799999999999999999999999999999998765
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.06 E-value=1.9e-10 Score=108.10 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 5567778999999999999998 7999999999999999999999999999999998763
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.04 E-value=2.1e-10 Score=109.10 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=53.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 5677778999999999999998 7999999999999999999999999999999998874
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.03 E-value=2.2e-10 Score=109.69 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=50.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 5567778999999999999998 7999999999999999999999999999999998875
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=1.4e-10 Score=97.09 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=51.4
Q ss_pred CCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 402 RPQRGLPESSVSILRAWL-FEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf-~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
++++.++.+++.+|+..| .. ++||+..++..||+++||+..||.+||+|+|.|.++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 455667888999999999 55 7999999999999999999999999999999998765
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.2e-10 Score=100.92 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChhhHhhhhhhhhhhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQT---------------------GLTRSQVSNWFINARVRL 458 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~T---------------------GLS~~QVsNWFiNaR~Rl 458 (675)
++|+|..|++.++.+|+.+|.. +|||+.++++.||..+ .|+..+|.+||+|+|.|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 5677778999999999999998 7999999999999999 799999999999999998
Q ss_pred chhhH
Q 038021 459 WKPMV 463 (675)
Q Consensus 459 kKp~i 463 (675)
++...
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 77533
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.00 E-value=4.1e-10 Score=94.06 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
++..++..|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 578999999999988 7999999999999999999999999999999998875
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.97 E-value=8.8e-10 Score=92.59 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=54.9
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 038021 399 HAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWK 460 (675)
Q Consensus 399 ~~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkK 460 (675)
.++|+|..|+.++..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--++-
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 377899999999999999999983 599999999999999999999999999999986653
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.94 E-value=4.3e-10 Score=106.52 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=54.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.+|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5677778999999999999976 7999999999999999999999999999999998763
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.93 E-value=7.9e-10 Score=98.26 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=51.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChhhHhhhhhhhhhhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQ------------------TG---LTRSQVSNWFINARVRL 458 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~------------------TG---LS~~QVsNWFiNaR~Rl 458 (675)
.+|+|..|++.++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|.+.
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567778999999999999988 799999999999999 88 99999999999999988
Q ss_pred chh
Q 038021 459 WKP 461 (675)
Q Consensus 459 kKp 461 (675)
++.
T Consensus 86 k~k 88 (99)
T 1lfb_A 86 AFR 88 (99)
T ss_dssp SCC
T ss_pred HHh
Confidence 664
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.89 E-value=1.3e-09 Score=90.26 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 409 ESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 409 k~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
.....+|+..|..+ ++||+..++..||+++||+..||..||+|+|.+.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34588999999543 7999999999999999999999999999999998764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.78 E-value=5.4e-09 Score=104.89 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTG---------------------LTRSQVSNWFINARVRL 458 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TG---------------------LS~~QVsNWFiNaR~Rl 458 (675)
.+|.|..|++.++.+|+.||.. +|||+..+|+.||+.++ ||..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 5667778999999999999998 79999999999999988 89999999999999875
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.77 E-value=4.4e-09 Score=109.18 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=50.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW 459 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk 459 (675)
.++.|.+.++..|+++|.. ||||+..+|.+||++|||++.||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3456899999999999988 69999999999999999999999999999999875
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.70 E-value=6.4e-09 Score=102.47 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTG---------------------LTRSQVSNWFINARVRL 458 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TG---------------------LS~~QVsNWFiNaR~Rl 458 (675)
.+|+|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4567778999999999999999 69999999999999999 99999999999999987
Q ss_pred ch
Q 038021 459 WK 460 (675)
Q Consensus 459 kK 460 (675)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.5e-08 Score=83.18 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 038021 409 ESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVR 457 (675)
Q Consensus 409 k~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~R 457 (675)
++++.+|++.|.. ||+|+.+++..||..+||++..|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 7889999999999 799999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.16 E-value=0.0035 Score=46.80 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.0
Q ss_pred hhHhhhhhhhhhhhchhhHH
Q 038021 445 SQVSNWFINARVRLWKPMVE 464 (675)
Q Consensus 445 ~QVsNWFiNaR~RlkKp~ie 464 (675)
.||..||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999887553
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.31 E-value=0.055 Score=45.64 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
.|+...++|+++|.+| -...+++...|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4677789999999995 78899999999999999999999999753
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.41 E-value=5.7 Score=33.19 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
||+..+.+|.-.|++ .| .-.++|+.+|++...|.++...+|+++++.+
T Consensus 38 L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999877666 33 3467999999999999999999999987754
No 81
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=67.90 E-value=5.8 Score=32.99 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYK 468 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~k 468 (675)
.||+..+.+|...|.-.-..++ .-.++|..+|++...|.+|...++.++++.+.....+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~ 76 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLK 76 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3899999999887751000133 3456899999999999999999999998876544333
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=63.72 E-value=14 Score=32.21 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVR 457 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~R 457 (675)
++|+.|+.+.+..+-.++.+ ++.++. ..+|+..|++...|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998777777766 466553 358999999999999998776653
No 83
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.50 E-value=6.4 Score=31.46 Aligned_cols=54 Identities=15% Similarity=-0.046 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW-KPMV 463 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk-Kp~i 463 (675)
.||+..+.+|...|.-.-..++ .-.++|+..|++...|.+|...++.+++ +.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 4899999999887751000133 2357999999999999999999999998 5544
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=58.87 E-value=15 Score=28.40 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 403 PQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 403 kRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
+|+.++.+.+......+.. ..+.......+|+..|++..+|.+|....
T Consensus 2 ~r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567888776655554443 22212236689999999999999996543
No 85
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=58.79 E-value=19 Score=31.34 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHHHHh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEF 471 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~ke~~ 471 (675)
.||+..+.|+.-.|...-..++ .-.++|..+|+|...|.++...+++++++.......+.-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999877752111133 3467999999999999999999999998887755555433
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=58.34 E-value=9.9 Score=33.31 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.||+..+.++. .+.+ .| .-.++|+.+|++...|.++...+|+++++.+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 38999999998 4444 44 3466999999999999999999999987654
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=55.31 E-value=11 Score=29.16 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.||+..+.+|...|.+ .+ .-.++|+..|++...|.+|...+|.++++.+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999877665 33 2357999999999999999999999887653
No 88
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=52.88 E-value=34 Score=28.34 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 038021 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFIN 453 (675)
Q Consensus 400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiN 453 (675)
.+++++.++.+.+.....++.. -. -...+|+.+|++...|.+|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3445678888775444444433 22 2567899999999999999743
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=51.60 E-value=8 Score=30.44 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
.||+..+.+|...|.-.-...+ .-.++|+.+|++...|.++...+++++++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877611000133 23569999999999999999999999987644
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=51.20 E-value=21 Score=31.59 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
.||+..+.++.-.+.+ .+ .-.++|+.+|++...|.+|...+|.++++.+.
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999887766 33 23679999999999999999999999876543
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.50 E-value=22 Score=24.79 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038021 405 RGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINAR 455 (675)
Q Consensus 405 R~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR 455 (675)
+.|+++.+..+...+.+ .+ ...++|+.+|++...|..|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777666444444443 33 256799999999999999986443
No 92
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.35 E-value=14 Score=34.49 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
.||+..+.+|.-.|.+ .+ .-.++|+.+|++...|..+...+|.++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 44 2356999999999999999999999987753
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.13 E-value=32 Score=26.64 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=41.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 038021 402 RPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEE 465 (675)
Q Consensus 402 RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~ 465 (675)
+....||+..+.+|..+ .+ .+ .-.++|+..|++...|..+....+.++......+
T Consensus 7 ~~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 61 (74)
T 1fse_A 7 QSKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ 61 (74)
T ss_dssp -CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred CCCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 44566999999999774 43 34 3356999999999999999999998886654433
No 94
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=43.45 E-value=26 Score=30.88 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV 463 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i 463 (675)
||+..+.++.-.+.+ .+ .-.++|+.+|++...|.++...+|.++++.+.
T Consensus 26 L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 26 LTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp SCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999877666 33 23679999999999999999999999976544
No 95
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.12 E-value=22 Score=32.27 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPM 462 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ 462 (675)
||+..+.+|.-.+.+ .++ -.++|+.+|++...|.++...+|+++++.+
T Consensus 141 L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999777665 332 256999999999999999999999987653
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=40.52 E-value=31 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMY 467 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~ 467 (675)
.||+..+.+|.-+ .+ .+ .-.++|+..|++...|.++..+++.+++.....++.
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4899999999774 43 33 346799999999999999999999999776554443
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.86 E-value=30 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYK 468 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~k 468 (675)
||+..+.+|.-+ .+ .+ .-.++|+..|++...|.++...++.+++.....++..
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~ 69 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVR 69 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 788889998664 43 33 2357999999999999999999999998765544433
No 98
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=34.26 E-value=1.4e+02 Score=27.72 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhcCCCchhhHHHHHHHHHHhhhhhhHHHH
Q 038021 279 SHAERQELQNKLTKLLSMLDEVDRRYKQY---YHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAIC 350 (675)
Q Consensus 279 s~~e~~e~q~k~~kLl~ml~Evd~ry~qy---~~qmq~vvssfe~vag~gaa~pyt~lALq~IsrhFr~LrdaI~ 350 (675)
|-.|=++|+.+=.+...-|.+.+.++++- ++++..++.++....+ ...|||.+....|++..+.|++.|.
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~--~~npYT~it~~~l~~~W~~l~~li~ 115 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLS--GSNPYTTVTPQIINSKWEKVQQLVP 115 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS--SSCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC--CCCCCccchHHHHHHHHHHHHHHHH
Confidence 34577788888899999999999999887 4557777777764332 2449998878888888887777665
No 99
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.33 E-value=47 Score=27.93 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 405 RGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 405 R~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
..||+..+.+|.-. .+ .+ .-.++|+.+|++...|.++..++|++++..
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 35999999999875 44 33 236799999999999999999999998654
No 100
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.15 E-value=62 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 410 SSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 410 ~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
+.++.+..|+.+|+..|-++ ...||+..|+++..+...|.-.
T Consensus 2 ~~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 2 NAKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 34677889999998775455 4558999999999999998776
No 101
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.96 E-value=58 Score=28.08 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=39.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 404 QRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 404 RR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
...||+..+.+|.- +.+ .+ .-.++|+..|++...|.++..+.+.++.-.
T Consensus 32 ~~~Lt~re~~Vl~l-~~~----G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-FAE----GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHH-HHH----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHH-HHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 46699999999965 445 22 237799999999999999999999988543
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=29.42 E-value=39 Score=28.01 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEM 466 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~ 466 (675)
.||+..+.+|.- +.+ .+.. .++|+..|++...|.++..++|++++.....++
T Consensus 29 ~Lt~~e~~vl~l-~~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 29 MLTEREMEILLL-IAK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp GCCSHHHHHHHH-HHT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred cCCHHHHHHHHH-HHc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 489999999976 444 3432 458999999999999999999999876544333
No 103
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.24 E-value=28 Score=31.45 Aligned_cols=47 Identities=26% Similarity=0.281 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 407 LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
||+..+.+|.-.+.+. .+| .++|+.+|++...|.+|...+|+++++.
T Consensus 136 L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 8999999998777763 333 3489999999999999999999998763
No 104
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=26.68 E-value=67 Score=35.02 Aligned_cols=54 Identities=15% Similarity=-0.049 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW-KPMV 463 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk-Kp~i 463 (675)
.||+..+.||...|.-.-..++ .-.++|+.+|+|...|..+...+++|++ +++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~ 429 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 429 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhh
Confidence 3899999999776651101243 5577999999999999999999999998 5544
No 105
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.02 E-value=59 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 406 GLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 406 ~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
.++.+....+...+.+ .. ....+|+.+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4555544444444433 22 24679999999999999998653
No 106
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.95 E-value=1.7e+02 Score=25.13 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhc--CCCCCCHHHHH----HHHHHhCCChhhH-hhhhhhhhhhh
Q 038021 401 WRPQRGLPESSVSILRAWLFEHF--LHPYPKDTDKI----MLARQTGLTRSQV-SNWFINARVRL 458 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf~eH~--~nPYPS~~eK~----~LA~~TGLS~~QV-sNWFiNaR~Rl 458 (675)
+|.+..+..+.-..|-.|+.+.. .-| |+..... .|+...|++.-.+ .+|+.+..+|.
T Consensus 67 kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 67 KTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 34555677788999999998764 334 6665543 4566677764344 48998887774
No 107
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=24.81 E-value=67 Score=25.84 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINARV 456 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR~ 456 (675)
..+||+.+|++...|++|..+.+.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988763
No 108
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.33 E-value=66 Score=30.92 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 038021 404 QRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP 461 (675)
Q Consensus 404 RR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp 461 (675)
...||+..+++| .|+.+ .+ .-.++|+..|++..-|++...++++|+.-.
T Consensus 173 ~~~Lt~~e~~vl-~~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 173 KQMLSPREMLCL-VWASK----GK----TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GGSCCHHHHHHH-HHHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHH-HHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 456999999999 55655 33 235689999999999999999999988443
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.69 E-value=1.7e+02 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=31.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChhhHhhhhhhh
Q 038021 404 QRGLPESSVSILRAWLFEHFLHPYPKD-TDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 404 RR~LPk~a~~iLr~Wf~eH~~nPYPS~-~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
++.++.+.+...-..+.++- .-|++. .....+|+..|++...|.+|..-.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 45688777654434443310 012332 356789999999999999996543
No 110
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.28 E-value=61 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038021 404 QRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINAR 455 (675)
Q Consensus 404 RR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR 455 (675)
|+.++.+.+...-.++... ..+ ....+|+.+|++...|.+|....+
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4568877765443443321 011 356899999999999999976443
No 111
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.26 E-value=66 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINAR 455 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR 455 (675)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45688888999999999988766
No 112
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.80 E-value=97 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 411 SVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 411 a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
.+..+.+|+.+|+..| ++ ...||+..|+++..+...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 4566779999998777 44 4568999999999999888865
No 113
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.63 E-value=2.4e+02 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038021 283 RQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVS 316 (675)
Q Consensus 283 ~~e~q~k~~kLl~ml~Evd~ry~qy~~qmq~vvs 316 (675)
..+.+.-+.+|...++||-.+-+.|.++++.++.
T Consensus 94 ~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~ 127 (165)
T 1gs9_A 94 SKELQAAQARLGADMEDVRGRLVQYRGEVQAMLG 127 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777889999999999999999999866553
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.12 E-value=46 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINAR 455 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR 455 (675)
...||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=21.10 E-value=50 Score=26.24 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINAR 455 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR 455 (675)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998876
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=20.84 E-value=47 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINARV 456 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR~ 456 (675)
...||+.+|++...|++|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987543
No 117
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.54 E-value=1.1e+02 Score=29.83 Aligned_cols=54 Identities=19% Similarity=0.023 Sum_probs=43.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 038021 405 RGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMY 467 (675)
Q Consensus 405 R~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~ie~~~ 467 (675)
..||+..+.+|.-. .+ .+ .-.++|+.+|++..-|.+...++|++++.....+..
T Consensus 196 ~~L~~~erevl~L~-~~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~ 249 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEAC 249 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 46999999999876 44 33 335689999999999999999999999887554443
No 118
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.51 E-value=98 Score=28.00 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHH----Hh--CCChhhHhhhhhhh
Q 038021 401 WRPQRGLPESSVSILRAWL-FEHFLHPYPKDTDKIMLAR----QT--GLTRSQVSNWFINA 454 (675)
Q Consensus 401 ~RkRR~LPk~a~~iLr~Wf-~eH~~nPYPS~~eK~~LA~----~T--GLS~~QVsNWFiNa 454 (675)
.++|+.|+-+++..+..|+ .+ ||-.+..+ ||+ +. +++...|+.|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~---la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQD---LIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHH---HHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHH---HHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4678889999999999998 44 56655444 555 67 78999999998764
No 119
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.11 E-value=48 Score=25.07 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 038021 433 KIMLARQTGLTRSQVSNWFINARV 456 (675)
Q Consensus 433 K~~LA~~TGLS~~QVsNWFiNaR~ 456 (675)
...||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999998765
No 120
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.08 E-value=1.1e+02 Score=26.36 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038021 408 PESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINA 454 (675)
Q Consensus 408 Pk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNa 454 (675)
....+..+..|+.+|+..+. ....||+..|+++..+...|...
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEW----TLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCC----CHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhccCCC----CHHHHHHHHCcCHHHHHHHHHHc
Confidence 44567778899999877653 45669999999999999999654
Done!