BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038022
         (402 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
           With The Cofactor Derivative Thiamin-2-Thiazolone
           Diphosphate And Adenosine Diphosphate
 pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
           With The Cofactor Derivative Thiamin-2-Thiazolone
           Diphosphate And Adenosine Diphosphate
 pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp And Oxalyl-Coa
 pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp And Oxalyl-Coa
 pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
           Reaction Intermediate
 pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
           Reaction Intermediate
 pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Formyl-Coa
 pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Formyl-Coa
 pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp
 pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp
 pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Coenzyme-A
 pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Coenzyme-A
          Length = 568

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           +G+  N+L+ + K +  G  LK     D++  E+ S     A   G +  A+S + KAL+
Sbjct: 279 IGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338

Query: 61  G--KSLHEWKNSLRELRTPSMVNFEG-VSAETYSSIELSFNQL 100
           G  K+  EW  +L+     +     G ++AET S +    N L
Sbjct: 339 GAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSL 381


>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
 pdb|1WWL|B Chain B, Crystal Structure Of Cd14
          Length = 312

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 16/78 (20%)

Query: 331 VFPQLTTLILQDLPKL--RCLYPGMHTSEWPALEILL-----------VC---GCDKLKI 374
           VFP L+TL L D P+L  R L   +   ++P L++L            VC      ++++
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 375 IAADLSQNNENDQLGIPA 392
              DLS N+  D  G P+
Sbjct: 231 QGLDLSHNSLRDAAGAPS 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,359,017
Number of Sequences: 62578
Number of extensions: 445828
Number of successful extensions: 1031
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 10
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)