Query 038022
Match_columns 402
No_of_seqs 322 out of 2232
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-50 3.4E-55 415.9 18.6 351 1-371 306-680 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-38 2.8E-43 343.2 23.4 347 1-393 340-735 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 5E-21 1.1E-25 177.5 7.0 132 4-137 149-285 (287)
4 KOG0617 Ras suppressor protein 99.5 2.6E-15 5.5E-20 122.0 -3.2 155 206-397 32-187 (264)
5 PLN00113 leucine-rich repeat r 99.4 1.2E-13 2.5E-18 149.1 8.1 138 239-394 182-319 (968)
6 PLN00113 leucine-rich repeat r 99.4 2.4E-13 5.3E-18 146.6 8.0 171 206-394 163-343 (968)
7 PLN03210 Resistant to P. syrin 99.4 2E-12 4.3E-17 140.7 11.6 175 207-393 611-835 (1153)
8 KOG0444 Cytoskeletal regulator 99.3 5.5E-14 1.2E-18 134.9 -2.3 155 230-397 107-305 (1255)
9 KOG0444 Cytoskeletal regulator 99.2 7E-13 1.5E-17 127.4 -1.5 167 209-397 175-376 (1255)
10 KOG0617 Ras suppressor protein 99.2 5.7E-13 1.2E-17 108.5 -3.4 145 202-383 51-196 (264)
11 KOG0472 Leucine-rich repeat pr 99.1 7.1E-12 1.5E-16 114.8 0.2 87 297-394 431-539 (565)
12 KOG4194 Membrane glycoprotein 99.1 1.1E-11 2.4E-16 118.4 0.2 135 242-392 314-448 (873)
13 KOG4194 Membrane glycoprotein 98.9 2.4E-10 5.2E-15 109.5 1.2 144 207-368 149-302 (873)
14 KOG0618 Serine/threonine phosp 98.9 3.3E-10 7.3E-15 113.8 2.2 172 205-394 239-487 (1081)
15 PRK15387 E3 ubiquitin-protein 98.8 4.9E-09 1.1E-13 107.6 6.6 76 301-395 382-457 (788)
16 KOG0472 Leucine-rich repeat pr 98.8 2.5E-11 5.4E-16 111.3 -9.0 167 208-397 46-220 (565)
17 PRK15370 E3 ubiquitin-protein 98.8 1.2E-08 2.5E-13 105.2 7.8 35 246-290 263-297 (754)
18 PRK15387 E3 ubiquitin-protein 98.8 5.3E-08 1.2E-12 100.1 11.3 147 206-377 221-379 (788)
19 KOG3207 Beta-tubulin folding c 98.7 5.5E-09 1.2E-13 97.1 2.9 150 206-370 120-282 (505)
20 PF14580 LRR_9: Leucine-rich r 98.7 5.8E-09 1.3E-13 88.0 2.9 113 239-369 35-150 (175)
21 PRK15370 E3 ubiquitin-protein 98.7 1.3E-08 2.8E-13 104.8 3.6 129 230-393 266-398 (754)
22 PF13855 LRR_8: Leucine rich r 98.6 2.9E-08 6.2E-13 68.8 3.7 60 245-312 1-60 (61)
23 PF14580 LRR_9: Leucine-rich r 98.6 5.1E-08 1.1E-12 82.4 5.1 108 241-370 15-124 (175)
24 KOG0618 Serine/threonine phosp 98.6 1.2E-08 2.6E-13 102.9 0.1 116 236-372 374-489 (1081)
25 PLN03150 hypothetical protein; 98.5 1.5E-07 3.2E-12 96.3 6.4 98 236-348 433-530 (623)
26 KOG0532 Leucine-rich repeat (L 98.5 9.3E-09 2E-13 98.6 -2.2 129 237-390 113-241 (722)
27 PLN03150 hypothetical protein; 98.5 1.9E-07 4E-12 95.5 6.2 114 246-376 419-532 (623)
28 KOG1259 Nischarin, modulator o 98.5 2.6E-08 5.5E-13 88.6 -0.2 134 206-377 283-416 (490)
29 KOG0532 Leucine-rich repeat (L 98.3 1.6E-07 3.4E-12 90.3 -0.0 140 206-385 120-259 (722)
30 KOG4658 Apoptotic ATPase [Sign 98.2 3.3E-07 7.2E-12 96.1 1.6 107 243-368 543-651 (889)
31 cd00116 LRR_RI Leucine-rich re 98.2 2.1E-07 4.5E-12 87.4 -0.3 145 240-395 131-290 (319)
32 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 60.5 3.4 59 275-343 1-59 (61)
33 PRK15386 type III secretion pr 98.2 2.3E-06 5E-11 81.2 5.8 67 241-321 48-114 (426)
34 COG4886 Leucine-rich repeat (L 98.2 1.1E-06 2.4E-11 85.3 3.5 164 208-395 117-289 (394)
35 cd00116 LRR_RI Leucine-rich re 98.2 3.4E-07 7.4E-12 86.0 -0.1 135 245-394 108-261 (319)
36 KOG1259 Nischarin, modulator o 98.1 3.2E-07 6.9E-12 81.7 -1.0 130 239-393 278-409 (490)
37 KOG2120 SCF ubiquitin ligase, 98.1 8.4E-08 1.8E-12 85.3 -5.5 150 240-396 205-376 (419)
38 COG4886 Leucine-rich repeat (L 98.0 2.7E-06 5.8E-11 82.6 2.3 135 237-394 131-266 (394)
39 KOG4237 Extracellular matrix p 97.9 1.2E-06 2.6E-11 80.9 -2.3 136 204-370 64-199 (498)
40 KOG3207 Beta-tubulin folding c 97.7 3.1E-06 6.8E-11 79.1 -2.4 136 240-392 141-280 (505)
41 KOG4237 Extracellular matrix p 97.7 2.6E-06 5.7E-11 78.7 -3.2 123 247-387 69-192 (498)
42 PF12799 LRR_4: Leucine Rich r 97.7 4.3E-05 9.3E-10 48.7 3.3 38 276-317 2-39 (44)
43 PF12799 LRR_4: Leucine Rich r 97.6 5.2E-05 1.1E-09 48.3 2.9 39 245-291 1-39 (44)
44 PRK15386 type III secretion pr 97.6 5.1E-05 1.1E-09 72.2 3.6 64 272-351 49-112 (426)
45 KOG3665 ZYG-1-like serine/thre 97.3 6.6E-05 1.4E-09 77.1 0.1 135 206-370 121-261 (699)
46 KOG1859 Leucine-rich repeat pr 97.2 6.1E-06 1.3E-10 81.9 -7.5 122 205-344 162-290 (1096)
47 KOG2120 SCF ubiquitin ligase, 97.2 2.9E-05 6.3E-10 69.4 -2.8 88 275-372 286-376 (419)
48 KOG1909 Ran GTPase-activating 97.2 0.00016 3.5E-09 66.1 1.7 93 297-395 209-310 (382)
49 KOG0531 Protein phosphatase 1, 97.2 0.00011 2.3E-09 71.9 0.4 84 206-318 94-178 (414)
50 KOG4579 Leucine-rich repeat (L 97.1 3.1E-05 6.8E-10 61.4 -2.8 112 246-378 28-141 (177)
51 KOG1644 U2-associated snRNP A' 97.1 0.0011 2.4E-08 56.2 5.5 105 246-368 43-149 (233)
52 KOG2982 Uncharacterized conser 97.1 0.00029 6.3E-09 63.2 2.0 71 238-317 90-161 (418)
53 KOG1644 U2-associated snRNP A' 96.9 0.0019 4.2E-08 54.9 5.4 93 239-343 58-150 (233)
54 KOG0531 Protein phosphatase 1, 96.9 0.00033 7.2E-09 68.4 0.7 108 240-370 90-197 (414)
55 KOG1859 Leucine-rich repeat pr 96.8 0.00011 2.5E-09 73.1 -2.9 17 206-222 108-124 (1096)
56 KOG4579 Leucine-rich repeat (L 96.8 5.2E-05 1.1E-09 60.2 -4.3 106 240-364 48-153 (177)
57 PRK04841 transcriptional regul 96.6 0.034 7.3E-07 60.1 13.6 145 11-183 185-332 (903)
58 KOG3665 ZYG-1-like serine/thre 96.6 0.00066 1.4E-08 69.9 0.4 134 244-395 121-262 (699)
59 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6E-08 56.0 2.0 40 271-312 61-102 (260)
60 KOG2123 Uncharacterized conser 96.2 0.00054 1.2E-08 61.0 -2.4 105 207-339 19-123 (388)
61 KOG2739 Leucine-rich acidic nu 95.8 0.0034 7.4E-08 55.5 0.8 93 239-343 59-153 (260)
62 KOG2123 Uncharacterized conser 95.7 0.00072 1.6E-08 60.2 -3.8 57 244-312 18-74 (388)
63 PF00560 LRR_1: Leucine Rich R 95.6 0.0078 1.7E-07 31.9 1.5 21 360-381 1-21 (22)
64 KOG1909 Ran GTPase-activating 95.3 0.0044 9.6E-08 57.0 -0.3 71 239-312 207-281 (382)
65 KOG4341 F-box protein containi 95.1 0.0011 2.3E-08 62.3 -4.7 118 245-373 138-256 (483)
66 PF13504 LRR_7: Leucine rich r 95.0 0.015 3.2E-07 28.6 1.4 17 359-376 1-17 (17)
67 KOG2982 Uncharacterized conser 94.9 0.02 4.3E-07 51.8 2.8 70 300-377 198-267 (418)
68 KOG4341 F-box protein containi 94.6 0.0026 5.7E-08 59.8 -3.5 122 241-376 160-285 (483)
69 PF00560 LRR_1: Leucine Rich R 94.5 0.019 4.2E-07 30.4 1.1 12 247-258 2-13 (22)
70 PF13306 LRR_5: Leucine rich r 94.3 0.18 4E-06 40.0 7.0 113 240-377 7-119 (129)
71 COG5238 RNA1 Ran GTPase-activa 94.3 0.051 1.1E-06 48.6 3.8 103 149-258 21-133 (388)
72 KOG1947 Leucine rich repeat pr 92.8 0.017 3.6E-07 57.4 -2.0 41 274-314 268-308 (482)
73 KOG3864 Uncharacterized conser 92.7 0.013 2.9E-07 49.9 -2.3 11 176-186 61-71 (221)
74 KOG3864 Uncharacterized conser 92.6 0.0092 2E-07 50.8 -3.3 90 276-374 102-191 (221)
75 PF13306 LRR_5: Leucine rich r 92.3 0.43 9.4E-06 37.8 6.2 110 266-392 3-112 (129)
76 PRK00080 ruvB Holliday junctio 91.5 0.7 1.5E-05 43.6 7.5 135 5-163 173-310 (328)
77 TIGR00635 ruvB Holliday juncti 90.7 2.1 4.5E-05 39.8 9.9 135 5-163 152-289 (305)
78 KOG1947 Leucine rich repeat pr 90.0 0.053 1.2E-06 53.7 -1.7 119 242-373 185-309 (482)
79 smart00369 LRR_TYP Leucine-ric 89.7 0.25 5.4E-06 27.1 1.6 15 245-259 2-16 (26)
80 smart00370 LRR Leucine-rich re 89.7 0.25 5.4E-06 27.1 1.6 15 245-259 2-16 (26)
81 TIGR03015 pepcterm_ATPase puta 86.5 4.2 9.1E-05 36.9 8.6 55 5-59 185-242 (269)
82 COG5238 RNA1 Ran GTPase-activa 81.5 1.4 3.1E-05 39.7 3.1 46 238-289 85-133 (388)
83 smart00367 LRR_CC Leucine-rich 81.4 0.9 1.9E-05 24.9 1.2 16 358-373 1-16 (26)
84 PF13516 LRR_6: Leucine Rich r 72.2 2.5 5.4E-05 22.5 1.3 10 275-284 2-11 (24)
85 KOG0473 Leucine-rich repeat pr 71.2 0.22 4.7E-06 43.7 -4.7 83 242-343 39-121 (326)
86 COG2909 MalT ATP-dependent tra 70.5 18 0.00038 38.2 7.7 141 11-183 193-338 (894)
87 COG3903 Predicted ATPase [Gene 69.1 21 0.00045 34.4 7.4 171 4-183 133-314 (414)
88 COG3899 Predicted ATPase [Gene 68.4 66 0.0014 34.8 11.9 136 5-160 212-354 (849)
89 smart00364 LRR_BAC Leucine-ric 63.3 4.8 0.0001 22.2 1.2 14 246-259 3-16 (26)
90 KOG0473 Leucine-rich repeat pr 61.7 0.42 9.2E-06 42.0 -4.8 90 266-370 33-122 (326)
91 smart00365 LRR_SD22 Leucine-ri 60.4 7.1 0.00015 21.5 1.6 16 244-259 1-16 (26)
92 smart00368 LRR_RI Leucine rich 54.6 9.1 0.0002 21.3 1.4 12 246-257 3-14 (28)
93 PF07725 LRR_3: Leucine Rich R 51.0 11 0.00023 19.4 1.2 18 247-264 2-19 (20)
94 PRK06893 DNA replication initi 39.5 76 0.0016 28.0 5.7 51 3-55 152-203 (229)
95 COG3695 Predicted methylated D 29.7 38 0.00081 25.6 1.7 30 44-73 31-63 (103)
96 PF14050 Nudc_N: N-terminal co 28.0 1.1E+02 0.0025 20.8 3.7 31 34-64 3-33 (62)
97 cd04443 DEP_GPR155 DEP (Dishev 26.8 1.9E+02 0.0041 21.1 5.0 45 114-165 26-70 (83)
98 PRK00411 cdc6 cell division co 25.8 4E+02 0.0086 25.5 8.7 135 5-161 200-356 (394)
99 cd04448 DEP_PIKfyve DEP (Dishe 22.9 2.1E+02 0.0046 20.6 4.6 46 114-166 24-69 (81)
100 cd04440 DEP_2_P-Rex DEP (Dishe 21.1 1.9E+02 0.0042 21.6 4.1 44 115-165 34-77 (93)
101 PF14516 AAA_35: AAA-like doma 21.1 2E+02 0.0042 27.1 5.3 54 4-62 193-246 (331)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-50 Score=415.87 Aligned_cols=351 Identities=25% Similarity=0.360 Sum_probs=282.1
Q ss_pred CCCcceEeccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHHHHHHhcCC
Q 038022 1 MGSEDNFLINNLKEEEAGRLLKMMAGDD--VENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKNSLRELRTP 77 (402)
Q Consensus 1 m~~~~~~~l~~L~~~~a~~Lf~~~a~~~--~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~~l~~l~~~ 77 (402)
||+.+.+++++|+.+|||.||++.|++. ..++.++++|++|+++|+|+|||++++|+.|+.| +.++|+++.+.+...
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 7888999999999999999999999544 3445589999999999999999999999999998 456899999998887
Q ss_pred CCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHH
Q 038022 78 SMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELR 155 (402)
Q Consensus 78 ~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~ 155 (402)
...+.+++.+.+++++++|||.||++ +|.||+|||+|| |.|++++|+.+|+||||+.+....+.+++.|.+|+.+|+
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 66777777889999999999999976 899999999999 999999999999999999987778899999999999999
Q ss_pred HhccccccC---CCCeEEccHHHHHHHHHHHh-----hcceEEEeccCCCCCCCchhhhhhccccccccCCCccc--ccc
Q 038022 156 DSCLLLEGD---SNEEFSMHDVVRDVAISVAC-----RHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTT--MYS 225 (402)
Q Consensus 156 ~~~ll~~~~---~~~~~~mhdlv~~~a~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~ 225 (402)
.+++++..+ ...+|+|||+||++|.++++ +|..++.. ..+....+....+...|++++.+|.+..+ ...
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~-~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSD-GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEEC-CcCccccccccchhheeEEEEeccchhhccCCCC
Confidence 999998665 34689999999999999999 56633322 22333456667788999999999998877 455
Q ss_pred CCce-EEccc-------cccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH
Q 038022 226 SSEI-TLDIS-------TLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI 297 (402)
Q Consensus 226 ~~~L-~L~l~-------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i 297 (402)
|+++ .|=+. ....+.|..|+.|++||+++|.--+ ++|.+ |+.|-+||||++++ +.++. +|.+ +
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-----~LP~~-I~~Li~LryL~L~~-t~I~~-LP~~-l 614 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-----KLPSS-IGELVHLRYLDLSD-TGISH-LPSG-L 614 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-----cCChH-HhhhhhhhcccccC-CCccc-cchH-H
Confidence 6655 22221 1233558889999999999865433 69996 99999999999999 58998 6888 7
Q ss_pred hcCCccCeeeeeccccccccccccccccccccccccccceeeccccc-ccceeCCCCCCCCCCcccEEEeecCcc
Q 038022 298 GSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLP-KLRCLYPGMHTSEWPALEILLVCGCDK 371 (402)
Q Consensus 298 ~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~-~L~~l~~~~~~~~l~~L~~L~l~~c~~ 371 (402)
++|+.|.+|++..+..+..+|..... +++|++|.+..-. .....-.+ ...++.+|+.+.+..++.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~--------L~~Lr~L~l~~s~~~~~~~~l~-el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLE--------LQSLRVLRLPRSALSNDKLLLK-ELENLEHLENLSITISSV 680 (889)
T ss_pred HHHHhhheeccccccccccccchhhh--------cccccEEEeeccccccchhhHH-hhhcccchhhheeecchh
Confidence 99999999999988877777654444 8899999877432 11111001 124566677776665553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-38 Score=343.21 Aligned_cols=347 Identities=19% Similarity=0.249 Sum_probs=247.5
Q ss_pred CCCcceEeccCCCHHHHHHHHHHhh-CCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCC
Q 038022 1 MGSEDNFLINNLKEEEAGRLLKMMA-GDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSM 79 (402)
Q Consensus 1 m~~~~~~~l~~L~~~~a~~Lf~~~a-~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~ 79 (402)
+|++++|+|+.|++++||+||+++| +...+++++++++++|+++|+|+|||++++|+.|++++.++|+.++++++...
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~- 418 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL- 418 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-
Confidence 3577899999999999999999999 55556678899999999999999999999999999999999999999987643
Q ss_pred CCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhcc
Q 038022 80 VNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCL 159 (402)
Q Consensus 80 ~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~l 159 (402)
+..|.++|++||++|+++..|.||+++|+|+...+.+. +..|.+.+..... ..++.|++++|
T Consensus 419 ------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~~-----------~~l~~L~~ksL 480 (1153)
T PLN03210 419 ------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDVN-----------IGLKNLVDKSL 480 (1153)
T ss_pred ------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCch-----------hChHHHHhcCC
Confidence 45799999999999987424999999999984444444 6667776544321 12899999999
Q ss_pred ccccCCCCeEEccHHHHHHHHHHHhhcce-----EEEeccCCCCC-CCchhhhhhccccccccCCCccc------cccCC
Q 038022 160 LLEGDSNEEFSMHDVVRDVAISVACRHQY-----VFSVRNEDVWD-WPDEDALRKCNAISLRNNKESTT------MYSSS 227 (402)
Q Consensus 160 l~~~~~~~~~~mhdlv~~~a~~i~~~e~~-----~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~------~~~~~ 227 (402)
++.. .++++|||++|+||+.+++++.. .+......... ........+++.+++..+.+..+ +..+.
T Consensus 481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 481 IHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred EEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 9653 46899999999999999977631 01100000000 00001123334444433222221 12222
Q ss_pred ce--------------------------------EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022 228 EI--------------------------------TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVF 271 (402)
Q Consensus 228 ~L--------------------------------~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i 271 (402)
+| .|++.+ .+|..+ ...+|+.|+++++.+.. +|.+ +
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~------L~~~-~ 630 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK------LWDG-V 630 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc------cccc-c
Confidence 22 233322 223333 45677788888777775 5554 6
Q ss_pred CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022 272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP 351 (402)
Q Consensus 272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~ 351 (402)
..+++|++|+|++|+.++. +|. ++.+++|++|++++|..+..+|..++. +++|+.|++++|++++.+|.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~-ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~--------L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKE-IPD--LSMATNLETLKLSDCSSLVELPSSIQY--------LNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccCCCCCEEECCCCCCcCc-CCc--cccCCcccEEEecCCCCccccchhhhc--------cCCCCEEeCCCCCCcCccCC
Confidence 7788889999988777776 464 578888999999888888888887665 88899999999888888887
Q ss_pred CCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 352 GMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 352 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
.. ++++|+.|++++|+.++.+|....++ +.++++++
T Consensus 700 ~i---~l~sL~~L~Lsgc~~L~~~p~~~~nL---~~L~L~~n 735 (1153)
T PLN03210 700 GI---NLKSLYRLNLSGCSRLKSFPDISTNI---SWLDLDET 735 (1153)
T ss_pred cC---CCCCCCEEeCCCCCCccccccccCCc---CeeecCCC
Confidence 54 67889999999998888888754443 34444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.83 E-value=5e-21 Score=177.50 Aligned_cols=132 Identities=30% Similarity=0.495 Sum_probs=105.8
Q ss_pred cceEeccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHHHHHHhcCCCCC
Q 038022 4 EDNFLINNLKEEEAGRLLKMMAGDD--VENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKNSLRELRTPSMV 80 (402)
Q Consensus 4 ~~~~~l~~L~~~~a~~Lf~~~a~~~--~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~~l~~l~~~~~~ 80 (402)
...|+|++|+.+||++||.+.|+.. ..++.+++.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999433 3455667889999999999999999999999655 567899999887665432
Q ss_pred CCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCC
Q 038022 81 NFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGV 137 (402)
Q Consensus 81 ~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~ 137 (402)
..+....+..++..||+.||++ +|+||+|||+|| +.|+++.++++|+++|++...
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 2223678999999999999998 799999999999 889999999999999999764
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.6e-15 Score=122.04 Aligned_cols=155 Identities=21% Similarity=0.311 Sum_probs=126.3
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
...+.++.+++|++..+ |+.+..+.+|++|++++|++++ +|.+ ++.++.||.|+++-
T Consensus 32 ~s~ITrLtLSHNKl~~v---------------ppnia~l~nlevln~~nnqie~------lp~~-issl~klr~lnvgm- 88 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV---------------PPNIAELKNLEVLNLSNNQIEE------LPTS-ISSLPKLRILNVGM- 88 (264)
T ss_pred hhhhhhhhcccCceeec---------------CCcHHHhhhhhhhhcccchhhh------cChh-hhhchhhhheecch-
Confidence 35667777888777754 7788999999999999999986 9996 99999999999987
Q ss_pred CCCccccchHHHhcCCccCeeeeecccc-ccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCED-LQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~-l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
+.+.. +|.. +|++|-|+.||+++|+- -..+|..+. .+..|+-|+|++. .++-+|+.+ +++++|+.|
T Consensus 89 nrl~~-lprg-fgs~p~levldltynnl~e~~lpgnff--------~m~tlralyl~dn-dfe~lp~dv--g~lt~lqil 155 (264)
T KOG0617|consen 89 NRLNI-LPRG-FGSFPALEVLDLTYNNLNENSLPGNFF--------YMTTLRALYLGDN-DFEILPPDV--GKLTNLQIL 155 (264)
T ss_pred hhhhc-Cccc-cCCCchhhhhhccccccccccCCcchh--------HHHHHHHHHhcCC-CcccCChhh--hhhcceeEE
Confidence 68877 6888 79999999999998862 224665433 3788888999884 788888876 889999999
Q ss_pred EeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022 365 LVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL 397 (402)
Q Consensus 365 ~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~ 397 (402)
.+.++. +-++|.++|.+++|+++.+.++...+
T Consensus 156 ~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 156 SLRDND-LLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eeccCc-hhhCcHHHHHHHHHHHHhcccceeee
Confidence 998865 77899999999999998888876554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.45 E-value=1.2e-13 Score=149.11 Aligned_cols=138 Identities=21% Similarity=0.180 Sum_probs=67.6
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
..++++++|++|++++|.+.+ .+|.. ++.+++|++|++++| .+.+..|.. ++++++|++|++++|.....+|
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~-----~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVG-----QIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcC-----cCChH-HcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence 334444444444444444433 33432 444444444444442 344333443 3445555555555444223344
Q ss_pred cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
...+. +++|+.|+++++.-...+|... .++++|++|++++|...+.+|..++++..|+.+++++++
T Consensus 254 ~~l~~--------l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 254 SSLGN--------LKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred hhHhC--------CCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 33333 5556666665543222333332 455666666666666555666666666666666665553
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.42 E-value=2.4e-13 Score=146.61 Aligned_cols=171 Identities=19% Similarity=0.144 Sum_probs=110.8
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
..+++.+++.+|.+.+. +.++++| +||+++ .+|..++++++|++|++++|.+.+ .+|.. ++.++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~~-l~~l~ 236 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-----EIPYE-IGGLT 236 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-----cCChh-HhcCC
Confidence 34566666666655433 2344444 666655 346667777777777777777765 56664 77777
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT 355 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~ 355 (402)
+|++|++++| .+.+.+|.+ ++++++|++|++++|.....+|..... +++|++|++++|.-...+|...
T Consensus 237 ~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~-- 304 (968)
T PLN00113 237 SLNHLDLVYN-NLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFS--------LQKLISLDLSDNSLSGEIPELV-- 304 (968)
T ss_pred CCCEEECcCc-eeccccChh-HhCCCCCCEEECcCCeeeccCchhHhh--------ccCcCEEECcCCeeccCCChhH--
Confidence 7777777774 566556665 677777777777777644455655444 7777777777764333444433
Q ss_pred CCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 356 SEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 356 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.++++|+.|++++|...+.+|..++.+..|+.++++++.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 567777777777777666777777777777777776654
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=2e-12 Score=140.66 Aligned_cols=175 Identities=22% Similarity=0.339 Sum_probs=94.1
Q ss_pred hhccccccccCCCccc---cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 207 RKCNAISLRNNKESTT---MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
.+++.+.+..+.+..+ ...+++| .+|+++. ..+.++.+++|+.|++++|.... .+|.+ ++.+++|+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-----~lp~s-i~~L~~L~ 684 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-----ELPSS-IQYLNKLE 684 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-----ccchh-hhccCCCC
Confidence 4444444444444443 1223333 4555431 11235556666666666654333 46653 66666666
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccc--------------------
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIP-------------------- 328 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~-------------------- 328 (402)
+|++++|+.++. +|.. + ++++|++|++++|..++.+|...... ..++
T Consensus 685 ~L~L~~c~~L~~-Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 685 DLDMSRCENLEI-LPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred EEeCCCCCCcCc-cCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 666666666665 3543 2 56666666666665444444211100 0000
Q ss_pred ------------cccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 329 ------------YFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 329 ------------~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
...+++|+.|++++|+.+..+|..+ +++++|+.|++++|+.++.+|..+ ++.+|+.++++++
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 0012356666666666666666654 567777777777777777777765 4566666666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=5.5e-14 Score=134.87 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=96.5
Q ss_pred EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022 230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH 305 (402)
Q Consensus 230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~ 305 (402)
+||||++ .|..+..-+++-+|+||+|+|.. +|.+.+-+|.-|-+||||+ |.+..+ |+. +..|.+|++
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet------IPn~lfinLtDLLfLDLS~-NrLe~L-PPQ-~RRL~~Lqt 177 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET------IPNSLFINLTDLLFLDLSN-NRLEML-PPQ-IRRLSMLQT 177 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCcccc------CCchHHHhhHhHhhhcccc-chhhhc-CHH-HHHHhhhhh
Confidence 6666663 35666666777777777777764 7777677777788888887 677774 444 567777777
Q ss_pred eeeeccc----ccccccc---------------------ccccc----------c-----ccccccccccceeecccccc
Q 038022 306 LDIRFCE----DLQEIIS---------------------ENRAD----------Q-----VIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 306 L~l~~~~----~l~~lp~---------------------~~~~~----------~-----~~~~~~l~~L~~L~L~~~~~ 345 (402)
|+|++|. .+..+|. +.... . ...+..+++|+.|+|+++ +
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-K 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-c
Confidence 7777765 2223332 11110 0 001122556666666653 5
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL 397 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~ 397 (402)
++.+.... +.+.+|++|+++. +.|+.||..+..+++|+.+-..+++..|
T Consensus 257 iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 257 ITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred eeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccc
Confidence 66665443 5667777777776 4477777777777777776666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=7e-13 Score=127.44 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=110.8
Q ss_pred ccccccccCCCccc-cccCCce----EEcccc------ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022 209 CNAISLRNNKESTT-MYSSSEI----TLDIST------LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL 277 (402)
Q Consensus 209 ~~~l~l~~~~~~~~-~~~~~~L----~L~l~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L 277 (402)
++++.+++|.+... +.+.|.+ +|.+++ ++|.++..|.+|+.+|+|.|++.. +|. ++-++.+|
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------vPe-cly~l~~L 247 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------VPE-CLYKLRNL 247 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc------chH-HHhhhhhh
Confidence 33444444444433 3333333 566655 667788888888888888888774 777 47778888
Q ss_pred cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccc--------------
Q 038022 278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL-------------- 343 (402)
Q Consensus 278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~-------------- 343 (402)
+.|+||+ |+++.+ ... ++...+|++|+++.|. ++.+|....+ +++|+.|.+.++
T Consensus 248 rrLNLS~-N~iteL-~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcK--------L~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 248 RRLNLSG-NKITEL-NMT-EGEWENLETLNLSRNQ-LTVLPDAVCK--------LTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred heeccCc-Cceeee-ecc-HHHHhhhhhhccccch-hccchHHHhh--------hHHHHHHHhccCcccccCCccchhhh
Confidence 8888888 677773 444 5667777777777775 7777766554 555555544432
Q ss_pred ----------cccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022 344 ----------PKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL 397 (402)
Q Consensus 344 ----------~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~ 397 (402)
++|+-.|.+. +.++.|+.|.++ |+.|-+||+.|..+..++.+|+..+--++
T Consensus 316 ~~Levf~aanN~LElVPEgl--cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGL--CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhccccccCchhh--hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 2444444443 567777888774 67788889988888888888887776655
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=5.7e-13 Score=108.47 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=111.6
Q ss_pred chhhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022 202 DEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV 281 (402)
Q Consensus 202 ~~~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~ 281 (402)
......++..+.+.+|+++++ |.+++.+++|+.|+++-|.+.. +|.+ ||.++-|+.||
T Consensus 51 nia~l~nlevln~~nnqie~l---------------p~~issl~klr~lnvgmnrl~~------lprg-fgs~p~levld 108 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEEL---------------PTSISSLPKLRILNVGMNRLNI------LPRG-FGSFPALEVLD 108 (264)
T ss_pred cHHHhhhhhhhhcccchhhhc---------------Chhhhhchhhhheecchhhhhc------Cccc-cCCCchhhhhh
Confidence 334567788889999998875 6778888888888888888774 8886 88888888888
Q ss_pred EeccCCCc-cccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022 282 VWYCDKLK-YIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA 360 (402)
Q Consensus 282 L~~c~~l~-~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~ 360 (402)
|++ +++. ..+|.. +..+..|+.|++++|. .+-+|...+. +++|+.|.+.+. .|-++|..+ +.++.
T Consensus 109 lty-nnl~e~~lpgn-ff~m~tlralyl~dnd-fe~lp~dvg~--------lt~lqil~lrdn-dll~lpkei--g~lt~ 174 (264)
T KOG0617|consen 109 LTY-NNLNENSLPGN-FFYMTTLRALYLGDND-FEILPPDVGK--------LTNLQILSLRDN-DLLSLPKEI--GDLTR 174 (264)
T ss_pred ccc-cccccccCCcc-hhHHHHHHHHHhcCCC-cccCChhhhh--------hcceeEEeeccC-chhhCcHHH--HHHHH
Confidence 888 4554 346666 4567788888888775 7888888777 888888888874 677788766 77888
Q ss_pred ccEEEeecCccccccccccCCCC
Q 038022 361 LEILLVCGCDKLKIIAADLSQNN 383 (402)
Q Consensus 361 L~~L~l~~c~~l~~lp~~~~~~~ 383 (402)
|++|.|.+ +.++-+|++++++.
T Consensus 175 lrelhiqg-nrl~vlppel~~l~ 196 (264)
T KOG0617|consen 175 LRELHIQG-NRLTVLPPELANLD 196 (264)
T ss_pred HHHHhccc-ceeeecChhhhhhh
Confidence 88888887 44888888877653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.14 E-value=7.1e-12 Score=114.78 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=59.2
Q ss_pred HhcCCccCeeeeeccccccccccccccccccccccccccceeecccc----------------------cccceeCCCCC
Q 038022 297 IGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL----------------------PKLRCLYPGMH 354 (402)
Q Consensus 297 i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~----------------------~~L~~l~~~~~ 354 (402)
++.+++|..|++++|. +.++|.+++. +.+|+.|+++.. +++..++++ .
T Consensus 431 l~~l~kLt~L~L~NN~-Ln~LP~e~~~--------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~-~ 500 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL-LNDLPEEMGS--------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS-G 500 (565)
T ss_pred HHhhhcceeeecccch-hhhcchhhhh--------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH-H
Confidence 5566666666666553 6666666555 555666655543 233333332 1
Q ss_pred CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 355 TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 355 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
..+|.+|.+|++.++ .+.++|+.+|+|+.++.+++.++-
T Consensus 501 l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 367889999999774 499999999999999999887763
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-11 Score=118.39 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=77.2
Q ss_pred CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc
Q 038022 242 VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN 321 (402)
Q Consensus 242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~ 321 (402)
.-.++|+.|+|++|.++. +|++.|..|..|+.|+|++ |.+..+ ....+..+.+|+.|||+.|. +.-...+
T Consensus 314 sftqkL~~LdLs~N~i~~------l~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IED- 383 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITR------LDEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIED- 383 (873)
T ss_pred hhcccceeEecccccccc------CChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEec-
Confidence 344445555555555543 5544455555555555555 455542 33334555666666665554 2222221
Q ss_pred ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCC
Q 038022 322 RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPA 392 (402)
Q Consensus 322 ~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~ 392 (402)
...++..+++|+.|.+.++ ++++++...+ ..+++|+.|++.+++-...=|..+..| +|.++.++.
T Consensus 384 ---aa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 384 ---AAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---chhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 1224444888888888874 7888887553 568888888888877544455566666 666655543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.93 E-value=2.4e-10 Score=109.47 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=70.0
Q ss_pred hhccccccccCCCccccc----cCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 207 RKCNAISLRNNKESTTMY----SSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~----~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
..+|.++++.|.++++.. .-.++ .|+|+++- ...|..+.+|-.|.|++|.++. +|...|.+|++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt------Lp~r~Fk~L~~ 222 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT------LPQRSFKRLPK 222 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc------cCHHHhhhcch
Confidence 445666666666655511 11222 44544422 2445555566666666666664 66655666666
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS 356 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~ 356 (402)
|+.|+|.. |.++.+--.. +.+|++|+.|.+..|. +..+-++ .+..+.++++|+|+. +++..+..+. ..
T Consensus 223 L~~LdLnr-N~irive~lt-FqgL~Sl~nlklqrN~-I~kL~DG-------~Fy~l~kme~l~L~~-N~l~~vn~g~-lf 290 (873)
T KOG4194|consen 223 LESLDLNR-NRIRIVEGLT-FQGLPSLQNLKLQRND-ISKLDDG-------AFYGLEKMEHLNLET-NRLQAVNEGW-LF 290 (873)
T ss_pred hhhhhccc-cceeeehhhh-hcCchhhhhhhhhhcC-cccccCc-------ceeeecccceeeccc-chhhhhhccc-cc
Confidence 66666666 4555432222 4556666666555553 4444332 122244455555443 2344433321 13
Q ss_pred CCCcccEEEeec
Q 038022 357 EWPALEILLVCG 368 (402)
Q Consensus 357 ~l~~L~~L~l~~ 368 (402)
++++|+.|+++.
T Consensus 291 gLt~L~~L~lS~ 302 (873)
T KOG4194|consen 291 GLTSLEQLDLSY 302 (873)
T ss_pred ccchhhhhccch
Confidence 444444444443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=3.3e-10 Score=113.79 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=124.8
Q ss_pred hhhhccccccccCCCccc---cccCCce-EEcccc---------------------------ccccccCCCCCCCEEeec
Q 038022 205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDIST---------------------------LLFNEKVALPNLEALEIS 253 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~---------------------------~~~~~l~~l~~L~~L~l~ 253 (402)
.+.++.+++++.|+++.+ ...|.++ .++... .+|+....+++|++|+|.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 467777888887777665 3445544 233222 235677788999999999
Q ss_pred Ccccccc---------------------------------------------cccCCCCCcccCCCCCccEEEEeccCCC
Q 038022 254 DINVDKI---------------------------------------------WHYNEIPAAVFPHFQSLTRLVVWYCDKL 288 (402)
Q Consensus 254 ~~~~~~~---------------------------------------------~~~~~lp~~~i~~l~~L~~L~L~~c~~l 288 (402)
.|.+... ....-+|. +-++.+||.|+|++ |.+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsy-NrL 395 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSY-NRL 395 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeecc-ccc
Confidence 8876640 00001332 56778899999999 799
Q ss_pred ccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeec
Q 038022 289 KYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCG 368 (402)
Q Consensus 289 ~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~ 368 (402)
.. +|.+...++..|++|++++|. ++.+|..... +++|++|...++ .+..+| .. .+++.|+.+|++
T Consensus 396 ~~-fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~--------~~~L~tL~ahsN-~l~~fP-e~--~~l~qL~~lDlS- 460 (1081)
T KOG0618|consen 396 NS-FPASKLRKLEELEELNLSGNK-LTTLPDTVAN--------LGRLHTLRAHSN-QLLSFP-EL--AQLPQLKVLDLS- 460 (1081)
T ss_pred cc-CCHHHHhchHHhHHHhcccch-hhhhhHHHHh--------hhhhHHHhhcCC-ceeech-hh--hhcCcceEEecc-
Confidence 88 798888999999999999997 9999987665 889999988864 788888 33 688999999996
Q ss_pred CccccccccccCCC-CcCCcCCCCCCC
Q 038022 369 CDKLKIIAADLSQN-NENDQLGIPAQQ 394 (402)
Q Consensus 369 c~~l~~lp~~~~~~-~~l~~~~~~~~~ 394 (402)
|+.|..+-....-. ..|+.+|++++.
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCc
Confidence 56677543333334 778889998887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.83 E-value=4.9e-09 Score=107.57 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=51.3
Q ss_pred CccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccC
Q 038022 301 KQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLS 380 (402)
Q Consensus 301 ~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 380 (402)
.+|+.|++++|. ++.+|.. .++|+.|+++++ .+.++|.. ..+|+.|+++++. ++.+|..++
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~l-----------~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~ 442 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPVL-----------PSELKELMVSGN-RLTSLPML-----PSGLLSLSVYRNQ-LTRLPESLI 442 (788)
T ss_pred cccceEEecCCc-ccCCCCc-----------ccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhccCc-ccccChHHh
Confidence 356666666653 5555532 456777777775 57766642 2467778887744 788888888
Q ss_pred CCCcCCcCCCCCCCC
Q 038022 381 QNNENDQLGIPAQQP 395 (402)
Q Consensus 381 ~~~~l~~~~~~~~~~ 395 (402)
++..+..+++++|.-
T Consensus 443 ~L~~L~~LdLs~N~L 457 (788)
T PRK15387 443 HLSSETTVNLEGNPL 457 (788)
T ss_pred hccCCCeEECCCCCC
Confidence 888888888877753
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.82 E-value=2.5e-11 Score=111.27 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=115.5
Q ss_pred hccccccccCCCccccccCCce----EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022 208 KCNAISLRNNKESTTMYSSSEI----TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~~~~~~~L----~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~ 279 (402)
.+..+.+++|+++.+..+..++ ++++.+ .+|++++.+..++.|+++.|+++. +|.. ++.+.+|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~------lp~~-i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE------LPEQ-IGSLISLVK 118 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh------ccHH-Hhhhhhhhh
Confidence 3455666677776663333222 666665 457788888888888888888875 8875 788888888
Q ss_pred EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP 359 (402)
Q Consensus 280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~ 359 (402)
++.+. +.+.. +|.+ ++.+-.|+.|+..+|+ +..+|.+++. +.+|..+++.+. +++.+|+.. -+|+
T Consensus 119 l~~s~-n~~~e-l~~~-i~~~~~l~dl~~~~N~-i~slp~~~~~--------~~~l~~l~~~~n-~l~~l~~~~--i~m~ 183 (565)
T KOG0472|consen 119 LDCSS-NELKE-LPDS-IGRLLDLEDLDATNNQ-ISSLPEDMVN--------LSKLSKLDLEGN-KLKALPENH--IAMK 183 (565)
T ss_pred hhccc-cceee-cCch-HHHHhhhhhhhccccc-cccCchHHHH--------HHHHHHhhcccc-chhhCCHHH--HHHH
Confidence 88887 67777 4666 6788888888877664 7778877665 667777777763 666666654 3477
Q ss_pred cccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022 360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL 397 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~ 397 (402)
.|++|+... +.++.+|+++|.+.+|..+.+..++-.|
T Consensus 184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred HHHhcccch-hhhhcCChhhcchhhhHHHHhhhccccc
Confidence 777777655 4477777777777777777666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.79 E-value=1.2e-08 Score=105.19 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=17.6
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCcc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKY 290 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~ 290 (402)
+|+.|++++|.++. +|.. ++ .+|++|++++ |+++.
T Consensus 263 ~L~~L~Ls~N~L~~------LP~~-l~--~sL~~L~Ls~-N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKISC------LPEN-LP--EELRYLSVYD-NSIRT 297 (754)
T ss_pred CCCEEECcCCccCc------cccc-cC--CCCcEEECCC-Ccccc
Confidence 45555555555543 4543 22 3555555555 35554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=5.3e-08 Score=100.05 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=69.4
Q ss_pred hhhccccccccCCCccccccCCce-EEccccccccccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
+..++.+.+..|+++.+....++| .|+++++....+. ..++|+.|++++|.++. +|.. . .+|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~------Lp~l-p---~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPAL-P---SGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCcccccceeeccCCchhh------hhhc-h---hhcCEEECc
Confidence 456777777777777664334444 5666654322221 12355666666665553 4431 1 244555555
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccccccccccceeecccccccceeCCCC
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
+ |+++. +|. .+++|++|++++|. ++.+|...... ..++. ..++|+.|+|+++ +++.+|...
T Consensus 291 ~-N~Lt~-LP~----~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N-~Ls~LP~lp 361 (788)
T PRK15387 291 G-NQLTS-LPV----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPT-LPSGLQELSVSDN-QLASLPTLP 361 (788)
T ss_pred C-Ccccc-ccc----cccccceeECCCCc-cccCCCCcccccccccccCccccccc-cccccceEecCCC-ccCCCCCCC
Confidence 5 34554 232 12455555555553 44444311000 00000 0235777777763 566665421
Q ss_pred CCCCCCcccEEEeecCcccccccc
Q 038022 354 HTSEWPALEILLVCGCDKLKIIAA 377 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~~l~~lp~ 377 (402)
++|+.|+++++ .+..+|.
T Consensus 362 -----~~L~~L~Ls~N-~L~~LP~ 379 (788)
T PRK15387 362 -----SELYKLWAYNN-RLTSLPA 379 (788)
T ss_pred -----cccceehhhcc-ccccCcc
Confidence 34444555442 2444554
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.5e-09 Score=97.13 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=99.3
Q ss_pred hhhccccccccCCCccc-----cccCCce-EEccccccc-------cccCCCCCCCEEeecCcccccccccCCCCCcccC
Q 038022 206 LRKCNAISLRNNKESTT-----MYSSSEI-TLDISTLLF-------NEKVALPNLEALEISDINVDKIWHYNEIPAAVFP 272 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~ 272 (402)
.++++.+++.+..+..+ ...|+.+ .|||+.+++ ....++++|+.|+|+.|.+..-|+ +..-.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-----s~~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-----SNTTL 194 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-----ccchh
Confidence 46777777776655544 4567777 899998664 556899999999999999875222 21234
Q ss_pred CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCC
Q 038022 273 HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG 352 (402)
Q Consensus 273 ~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~ 352 (402)
.+++|+.|.|++| ++..---......+|+|+.|++.+|..+..-..... .+..|++|+|++. ++-+++..
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--------i~~~L~~LdLs~N-~li~~~~~ 264 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--------ILQTLQELDLSNN-NLIDFDQG 264 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--------hhhHHhhccccCC-cccccccc
Confidence 6789999999999 666422223356788999999988852222111111 1667777888774 45555544
Q ss_pred CCCCCCCcccEEEeecCc
Q 038022 353 MHTSEWPALEILLVCGCD 370 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~ 370 (402)
...+.+|.|..|+++.|.
T Consensus 265 ~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred cccccccchhhhhccccC
Confidence 444667777777776654
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=5.8e-09 Score=88.04 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=40.7
Q ss_pred cccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 239 NEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 239 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
+.++ .+.+|+.|++++|.++. ++. +..+++|++|++++ |.++.+ +..+...+++|++|++++|. +.++
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~------l~~--l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N~-I~~l 103 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITK------LEG--LPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNNK-ISDL 103 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--------TT------TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SC
T ss_pred cchhhhhcCCCEEECCCCCCcc------ccC--ccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCCc-CCCh
Confidence 3444 46677788888887775 654 66777788888877 677774 33322457778888877664 5444
Q ss_pred ccccccccccccccccccceeecccccccceeCCC--CCCCCCCcccEEEeecC
Q 038022 318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPALEILLVCGC 369 (402)
Q Consensus 318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L~~L~l~~c 369 (402)
-.- . ....+++|+.|++.++|- ..-+.- ..+..+|+|+.||-...
T Consensus 104 ~~l-~-----~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 104 NEL-E-----PLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CCC-G-----GGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HHh-H-----HHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 321 1 222377777777777653 222110 01235666666655443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=1.3e-08 Score=104.83 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=71.2
Q ss_pred EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022 230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH 305 (402)
Q Consensus 230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~ 305 (402)
.|+++++ +|..+. ++|++|++++|.++. +|.. +. .+|++|++++ |.++. +|... .++|++
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~------LP~~-lp--~sL~~L~Ls~-N~Lt~-LP~~l---~~sL~~ 329 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRT------LPAH-LP--SGITHLNVQS-NSLTA-LPETL---PPGLKT 329 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCcccc------Cccc-ch--hhHHHHHhcC-Ccccc-CCccc---ccccee
Confidence 5666653 233332 479999999999885 6653 32 3566677766 46665 35431 256666
Q ss_pred eeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcC
Q 038022 306 LDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNEN 385 (402)
Q Consensus 306 L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l 385 (402)
|++++|. ++.+|... .++|+.|++++| ++..+|... .++|+.|+|++|. +..+|..+. ..|
T Consensus 330 L~Ls~N~-Lt~LP~~l----------~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~~l~--~sL 390 (754)
T PRK15370 330 LEAGENA-LTSLPASL----------PPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPENLP--AAL 390 (754)
T ss_pred ccccCCc-cccCChhh----------cCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCHhHH--HHH
Confidence 6666664 55565421 345666666654 455555432 1456666666543 555555442 234
Q ss_pred CcCCCCCC
Q 038022 386 DQLGIPAQ 393 (402)
Q Consensus 386 ~~~~~~~~ 393 (402)
+.++++++
T Consensus 391 ~~LdLs~N 398 (754)
T PRK15370 391 QIMQASRN 398 (754)
T ss_pred HHHhhccC
Confidence 44444443
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.9e-08 Score=68.84 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=49.8
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~ 312 (402)
++|++|++++|.++. +|..+|..+++|++|++++ +.++.+.|.. +.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~------i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE------IPPDSFSNLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE------ECTTTTTTGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc------cCHHHHcCCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCCc
Confidence 478899999999986 8877788999999999997 5888864444 7899999999998875
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=5.1e-08 Score=82.35 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
+.+..+++.|+|++|.|+. +.. ++ .+.+|+.|++++ |.++.+ +. +..+++|++|++++|. ++++..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~------Ie~--L~~~l~~L~~L~Ls~-N~I~~l-~~--l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST------IEN--LGATLDKLEVLDLSN-NQITKL-EG--LPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp ---------------------------S----TT-TT--EEE-TT-S--S---TT------TT--EEE--SS----S-CH
T ss_pred ccccccccccccccccccc------ccc--hhhhhcCCCEEECCC-CCCccc-cC--ccChhhhhhcccCCCC-CCcccc
Confidence 3445567888888888874 443 44 577888888888 578774 32 5678888888888775 777754
Q ss_pred cc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 320 EN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 320 ~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
.. .. +|+|++|+++++ ++.++..-.....+++|+.|++.++|
T Consensus 82 ~l~~~--------lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 82 GLDKN--------LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHHH---------TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred chHHh--------CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 32 12 788888888864 67766554445677888888888877
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-08 Score=102.92 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=96.4
Q ss_pred ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022 236 LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ 315 (402)
Q Consensus 236 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~ 315 (402)
..++.+.++++||+|+|++|.+.. +|.+.+.++..|+.|+||| |+++. +|.+ +..++.|++|....|. +.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~------fpas~~~kle~LeeL~LSG-NkL~~-Lp~t-va~~~~L~tL~ahsN~-l~ 443 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNS------FPASKLRKLEELEELNLSG-NKLTT-LPDT-VANLGRLHTLRAHSNQ-LL 443 (1081)
T ss_pred cchhhhccccceeeeeeccccccc------CCHHHHhchHHhHHHhccc-chhhh-hhHH-HHhhhhhHHHhhcCCc-ee
Confidence 346788999999999999999985 9998899999999999999 79999 5877 7899999999987764 88
Q ss_pred ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccc
Q 038022 316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKL 372 (402)
Q Consensus 316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 372 (402)
..|. ... ++.|+.++++ |++|..+-.... ...|+|++|+++|++.+
T Consensus 444 ~fPe-~~~--------l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 444 SFPE-LAQ--------LPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred echh-hhh--------cCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCccc
Confidence 8884 333 8999999999 678876654322 24489999999998853
No 25
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=1.5e-07 Score=96.26 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=60.9
Q ss_pred ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022 236 LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ 315 (402)
Q Consensus 236 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~ 315 (402)
.+|..+.++++|+.|+|++|.+.+ .+|.. ++.+++|++|+|++ |.+.+.+|.+ ++++++|++|++++|....
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g-----~iP~~-~~~l~~L~~LdLs~-N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRG-----NIPPS-LGSITSLEVLDLSY-NSFNGSIPES-LGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccC-----cCChH-HhCCCCCCEEECCC-CCCCCCCchH-HhcCCCCCEEECcCCcccc
Confidence 455666777777777777777765 56664 67777777777777 4666655665 5677777777777766444
Q ss_pred ccccccccccccccccccccceeecccccccce
Q 038022 316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRC 348 (402)
Q Consensus 316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 348 (402)
.+|...+.. +.++..+++.+++.+..
T Consensus 505 ~iP~~l~~~-------~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 505 RVPAALGGR-------LLHRASFNFTDNAGLCG 530 (623)
T ss_pred cCChHHhhc-------cccCceEEecCCccccC
Confidence 666554320 23445555555544443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=9.3e-09 Score=98.57 Aligned_cols=129 Identities=23% Similarity=0.311 Sum_probs=74.0
Q ss_pred cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022 237 LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE 316 (402)
Q Consensus 237 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~ 316 (402)
+|..++++..|.+|+|+.|.++. +|.. ++.|+ |+.|-+++ |+++. +|.. ++.++.|..||.+.|. +..
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~------lp~~-lC~lp-Lkvli~sN-Nkl~~-lp~~-ig~~~tl~~ld~s~ne-i~s 180 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSH------LPDG-LCDLP-LKVLIVSN-NKLTS-LPEE-IGLLPTLAHLDVSKNE-IQS 180 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhc------CChh-hhcCc-ceeEEEec-Ccccc-CCcc-cccchhHHHhhhhhhh-hhh
Confidence 45666666666666666666664 6664 55553 66666666 56665 3555 5666666666666554 666
Q ss_pred cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCC
Q 038022 317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGI 390 (402)
Q Consensus 317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~ 390 (402)
+|...+. +.+|+.|++... ++..+|... ..+ .|..|+++ |+++..+|..+-+|..|+.+-+
T Consensus 181 lpsql~~--------l~slr~l~vrRn-~l~~lp~El--~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 181 LPSQLGY--------LTSLRDLNVRRN-HLEDLPEEL--CSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred chHHhhh--------HHHHHHHHHhhh-hhhhCCHHH--hCC-ceeeeecc-cCceeecchhhhhhhhheeeee
Confidence 6665554 556666655553 455555543 222 34555553 4556666666655555555443
No 27
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=1.9e-07 Score=95.51 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ 325 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 325 (402)
.++.|+|++|.+.+ .+|.. ++.+++|+.|+|++ +.+.+.+|.+ ++.+++|+.|++++|.....+|...+.
T Consensus 419 ~v~~L~L~~n~L~g-----~ip~~-i~~L~~L~~L~Ls~-N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~-- 488 (623)
T PLN03150 419 FIDGLGLDNQGLRG-----FIPND-ISKLRHLQSINLSG-NSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQ-- 488 (623)
T ss_pred EEEEEECCCCCccc-----cCCHH-HhCCCCCCEEECCC-CcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhc--
Confidence 36788899998887 68875 88999999999998 5888777876 789999999999988755577877666
Q ss_pred ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA 376 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 376 (402)
+++|+.|+|+++.--..+|.... ..+.++..+++.+++.+-..|
T Consensus 489 ------L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 489 ------LTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ------CCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 88999999998754446665431 223466778888777666554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2.6e-08 Score=88.57 Aligned_cols=134 Identities=17% Similarity=0.158 Sum_probs=88.6
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
|+.+..+.+++|.|+.+ -+++.-.+.+|+|++|.|.+.. +.+ +..|++|+.|||++
T Consensus 283 Wq~LtelDLS~N~I~~i---------------DESvKL~Pkir~L~lS~N~i~~------v~n--La~L~~L~~LDLS~- 338 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI---------------DESVKLAPKLRRLILSQNRIRT------VQN--LAELPQLQLLDLSG- 338 (490)
T ss_pred Hhhhhhccccccchhhh---------------hhhhhhccceeEEeccccceee------ehh--hhhcccceEeeccc-
Confidence 45555555555555443 2445566778888888888764 443 66677788888887
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL 365 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~ 365 (402)
|.++.+ ..|--+|-|.++|.+++|. ++.+.. .++ +-+|..|+++++ +++.+.....++++|+|+++.
T Consensus 339 N~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~LSG-L~K--------LYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 339 NLLAEC--VGWHLKLGNIKTLKLAQNK-IETLSG-LRK--------LYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred chhHhh--hhhHhhhcCEeeeehhhhh-Hhhhhh-hHh--------hhhheecccccc-chhhHHHhcccccccHHHHHh
Confidence 566653 2334567788888887775 555542 222 667777888874 677776555568888888888
Q ss_pred eecCcccccccc
Q 038022 366 VCGCDKLKIIAA 377 (402)
Q Consensus 366 l~~c~~l~~lp~ 377 (402)
+.++| +..+|+
T Consensus 406 L~~NP-l~~~vd 416 (490)
T KOG1259|consen 406 LTGNP-LAGSVD 416 (490)
T ss_pred hcCCC-ccccch
Confidence 88877 666665
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=1.6e-07 Score=90.34 Aligned_cols=140 Identities=20% Similarity=0.282 Sum_probs=108.0
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
...+..+++..|+++.+ |..++.|+ |++|-+++|+++. +|.. ++.+..|..||.+.
T Consensus 120 L~~lt~l~ls~NqlS~l---------------p~~lC~lp-Lkvli~sNNkl~~------lp~~-ig~~~tl~~ld~s~- 175 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHL---------------PDGLCDLP-LKVLIVSNNKLTS------LPEE-IGLLPTLAHLDVSK- 175 (722)
T ss_pred hhHHHHhhhccchhhcC---------------ChhhhcCc-ceeEEEecCcccc------CCcc-cccchhHHHhhhhh-
Confidence 34555566666655543 55666665 7999999999985 8986 88889999999998
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL 365 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~ 365 (402)
+.+.. +|.. ++.+.+|+.|+++.|. +..+|.+... + .|..|+++ |+++..||..+ .+|..|++|-
T Consensus 176 nei~s-lpsq-l~~l~slr~l~vrRn~-l~~lp~El~~--------L-pLi~lDfS-cNkis~iPv~f--r~m~~Lq~l~ 240 (722)
T KOG0532|consen 176 NEIQS-LPSQ-LGYLTSLRDLNVRRNH-LEDLPEELCS--------L-PLIRLDFS-CNKISYLPVDF--RKMRHLQVLQ 240 (722)
T ss_pred hhhhh-chHH-hhhHHHHHHHHHhhhh-hhhCCHHHhC--------C-ceeeeecc-cCceeecchhh--hhhhhheeee
Confidence 47888 4666 7899999999999886 8888887653 3 47888998 67999999876 7899999999
Q ss_pred eecCccccccccccCCCCcC
Q 038022 366 VCGCDKLKIIAADLSQNNEN 385 (402)
Q Consensus 366 l~~c~~l~~lp~~~~~~~~l 385 (402)
|.++| |.+=|..+--++..
T Consensus 241 LenNP-LqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 241 LENNP-LQSPPAQICEKGKV 259 (722)
T ss_pred eccCC-CCCChHHHHhccce
Confidence 98877 88888776544443
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=3.3e-07 Score=96.09 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCCCCCEEeecCcc--cccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022 243 ALPNLEALEISDIN--VDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE 320 (402)
Q Consensus 243 ~l~~L~~L~l~~~~--~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~ 320 (402)
..+.|++|-+.+|. +.. ++...|..++.|++|||++|..+.. +|.+ |++|.+|++|+++++. +.++|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~------is~~ff~~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t~-I~~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE------ISGEFFRSLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDTG-ISHLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhh------cCHHHHhhCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCCC-ccccchH
Confidence 34479999998886 443 6665688899999999999888888 6988 8999999999999886 9999999
Q ss_pred cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeec
Q 038022 321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCG 368 (402)
Q Consensus 321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~ 368 (402)
+++ |.+|.+|++.....+..++... ..+++|++|.+..
T Consensus 614 l~~--------Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 614 LGN--------LKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred HHH--------HHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 887 9999999999988888874432 5689999999865
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.23 E-value=2.1e-07 Score=87.43 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=69.6
Q ss_pred ccCCC-CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc----cchHHHhcCCccCeeeeeccccc
Q 038022 240 EKVAL-PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDL 314 (402)
Q Consensus 240 ~l~~l-~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l 314 (402)
.+..+ ++|+.|++++|.+++.- ...++. .+..+.+|++|++++| .+++. ++.. +..+++|++|++++|. +
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-i 205 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGAS-CEALAK-ALRANRDLKELNLANN-GIGDAGIRALAEG-LKANCNLEVLDLNNNG-L 205 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchH-HHHHHH-HHHhCCCcCEEECcCC-CCchHHHHHHHHH-HHhCCCCCEEeccCCc-c
Confidence 34455 67777777777665200 001222 2445566777777774 55521 1222 3344577777777664 3
Q ss_pred ccccc-ccccccccccccccccceeecccccccceeCC-----CCCCCCCCcccEEEeecCccc----cccccccCCCCc
Q 038022 315 QEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYP-----GMHTSEWPALEILLVCGCDKL----KIIAADLSQNNE 384 (402)
Q Consensus 315 ~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~-----~~~~~~l~~L~~L~l~~c~~l----~~lp~~~~~~~~ 384 (402)
..... .... ....+++|++|++++| .+..... ... ...+.|+.|++++|..- ..++..+.....
T Consensus 206 ~~~~~~~l~~----~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 206 TDEGASALAE----TLASLKSLEVLNLGDN-NLTDAGAAALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ChHHHHHHHH----HhcccCCCCEEecCCC-cCchHHHHHHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 32110 0000 0111566777777765 3432110 000 12356777777766521 233444444456
Q ss_pred CCcCCCCCCCC
Q 038022 385 NDQLGIPAQQP 395 (402)
Q Consensus 385 l~~~~~~~~~~ 395 (402)
|+.++++++.-
T Consensus 280 L~~l~l~~N~l 290 (319)
T cd00116 280 LLELDLRGNKF 290 (319)
T ss_pred ccEEECCCCCC
Confidence 66666665543
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.3e-06 Score=60.45 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccc
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
++|++|++++| +++.+ |...+.++++|++|++++|. ++.++... +..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~~~~-------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIPPDA-------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEETTT-------TTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccCHHH-------HcCCCCCCEEeCcCC
Confidence 35677777763 67664 43335667777777776554 66665432 112666666666654
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=2.3e-06 Score=81.19 Aligned_cols=67 Identities=21% Similarity=0.410 Sum_probs=43.0
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE 320 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~ 320 (402)
+..+.+++.|++++|.++. +|. +. .+|+.|.+++|+.++. +|.. + .++|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~s------LP~--LP--~sLtsL~Lsnc~nLts-LP~~-L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES------LPV--LP--NELTEITIENCNNLTT-LPGS-I--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc------cCC--CC--CCCcEEEccCCCCccc-CCch-h--hhhhhheEccCcccccccccc
Confidence 3445677777777777764 552 22 2577777777777765 4654 2 247777777777667666654
Q ss_pred c
Q 038022 321 N 321 (402)
Q Consensus 321 ~ 321 (402)
.
T Consensus 114 L 114 (426)
T PRK15386 114 V 114 (426)
T ss_pred c
Confidence 3
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.1e-06 Score=85.28 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=105.2
Q ss_pred hccccccccCCCccc--cc-cC-Cce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 208 KCNAISLRNNKESTT--MY-SS-SEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~--~~-~~-~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
.+..+.+..|.+..+ .. .. +++ .|+++.+ +|..+..+++|+.|++++|.+.. +|.. .+.+++|+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~------l~~~-~~~~~~L~ 189 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD------LPKL-LSNLSNLN 189 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh------hhhh-hhhhhhhh
Confidence 455666666666555 11 11 133 4455442 23456778888888888888875 7763 45777888
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW 358 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l 358 (402)
.|++++ +++..+ |.. ++.+.+|++|.++++. ...++..... +.++..+.+.+. ++..++... +.+
T Consensus 190 ~L~ls~-N~i~~l-~~~-~~~~~~L~~l~~~~N~-~~~~~~~~~~--------~~~l~~l~l~~n-~~~~~~~~~--~~l 254 (394)
T COG4886 190 NLDLSG-NKISDL-PPE-IELLSALEELDLSNNS-IIELLSSLSN--------LKNLSGLELSNN-KLEDLPESI--GNL 254 (394)
T ss_pred heeccC-CccccC-chh-hhhhhhhhhhhhcCCc-ceecchhhhh--------cccccccccCCc-eeeeccchh--ccc
Confidence 888888 577774 554 3455568888887764 4444544443 666777765543 455544433 677
Q ss_pred CcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
++|+.|+++++. +..++. ++....++.++++++..
T Consensus 255 ~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 255 SNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccceecccccc-cccccc-ccccCccCEEeccCccc
Confidence 888888887644 788887 88888888888877543
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.17 E-value=3.4e-07 Score=85.98 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=79.1
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCC-CCccEEEEeccCCCccc----cchHHHhcCCccCeeeeecccccc----
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHF-QSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDLQ---- 315 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l-~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l~---- 315 (402)
++|++|++++|.+...- ...+.. .+..+ ++|+.|++++| .+++. ++.. +..+++|++|++++|. ++
T Consensus 108 ~~L~~L~ls~~~~~~~~-~~~l~~-~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 108 SSLQELKLNNNGLGDRG-LRLLAK-GLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred CcccEEEeeCCccchHH-HHHHHH-HHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCC-CchHHH
Confidence 44899999888776200 000222 24556 78899999986 56631 1222 4567789999998875 44
Q ss_pred -ccccccccccccccccccccceeecccccccceeCCC---CCCCCCCcccEEEeecCccccc-cccccC-----CCCcC
Q 038022 316 -EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCDKLKI-IAADLS-----QNNEN 385 (402)
Q Consensus 316 -~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~~l~~-lp~~~~-----~~~~l 385 (402)
.++..... +++|++|++++| .+...... .....+++|++|++++|+ ++. -+..+. ....|
T Consensus 183 ~~l~~~l~~--------~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 183 RALAEGLKA--------NCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISL 252 (319)
T ss_pred HHHHHHHHh--------CCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCc
Confidence 22222222 568999999887 34322110 012467889999999886 432 111111 13577
Q ss_pred CcCCCCCCC
Q 038022 386 DQLGIPAQQ 394 (402)
Q Consensus 386 ~~~~~~~~~ 394 (402)
+.++++++.
T Consensus 253 ~~L~l~~n~ 261 (319)
T cd00116 253 LTLSLSCND 261 (319)
T ss_pred eEEEccCCC
Confidence 778877764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=3.2e-07 Score=81.74 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=103.3
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
..+..-+.|..+|+|+|.++. +..+ ..-++.++.|+++. |.+..+ .+ +..|++|+.||+++|. +.++.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~------iDES-vKL~Pkir~L~lS~-N~i~~v--~n-La~L~~L~~LDLS~N~-Ls~~~ 345 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQ------IDES-VKLAPKLRRLILSQ-NRIRTV--QN-LAELPQLQLLDLSGNL-LAECV 345 (490)
T ss_pred EecchHhhhhhccccccchhh------hhhh-hhhccceeEEeccc-cceeee--hh-hhhcccceEeecccch-hHhhh
Confidence 445566789999999999985 7775 78889999999999 788874 23 6789999999999986 88877
Q ss_pred cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc--ccCCCCcCCcCCCCCC
Q 038022 319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA--DLSQNNENDQLGIPAQ 393 (402)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~~l~~~~~~~~ 393 (402)
....+ +.++++|.|+++ .++++.. .+.+=+|..|+++++. ++.+.. +||++..|..+.+.++
T Consensus 346 Gwh~K--------LGNIKtL~La~N-~iE~LSG---L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 346 GWHLK--------LGNIKTLKLAQN-KIETLSG---LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhHhh--------hcCEeeeehhhh-hHhhhhh---hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 66555 889999999984 7777753 2577899999999854 777766 7888887777666544
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.4e-08 Score=85.28 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=84.4
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.++++.+|+.|.++|+.+.. ++-. .|.+-.+|+.|+++.|++++..--..++.++..|..|++++|...++...
T Consensus 205 iLs~C~kLk~lSlEg~~LdD-----~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDD-----PIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHhhhhccccccccCc-----HHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 34566667777777776654 3333 25566677777777777776633333456677777777777753332211
Q ss_pred c----cccc-----------------cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc-cccc
Q 038022 320 E----NRAD-----------------QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK-IIAA 377 (402)
Q Consensus 320 ~----~~~~-----------------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~-~lp~ 377 (402)
. ++.. -+.-.-.+|+|.+|+|++|..++.=... .+.+++.|++|.++.|..+- ..-.
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~ 357 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLL 357 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHee
Confidence 1 1100 0000112677777777777666542111 12567778888888877532 1112
Q ss_pred ccCCCCcCCcCCCCCCCCc
Q 038022 378 DLSQNNENDQLGIPAQQPV 396 (402)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~~ 396 (402)
+++.+.+|..+++-+..+.
T Consensus 358 ~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeccCcceEEEEeccccCc
Confidence 5566667777776665554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.00 E-value=2.7e-06 Score=82.58 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=92.1
Q ss_pred cccccCCCC-CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022 237 LFNEKVALP-NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ 315 (402)
Q Consensus 237 ~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~ 315 (402)
++.....+. +|+.|++++|.+.. +|.. ++.+++|+.|+++. +.+..+ |.. .+.+++|+.|+++++. +.
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~~------l~~~-~~~l~~L~~L~l~~-N~l~~l-~~~-~~~~~~L~~L~ls~N~-i~ 199 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIES------LPSP-LRNLPNLKNLDLSF-NDLSDL-PKL-LSNLSNLNNLDLSGNK-IS 199 (394)
T ss_pred Cccccccchhhcccccccccchhh------hhhh-hhccccccccccCC-chhhhh-hhh-hhhhhhhhheeccCCc-cc
Confidence 344555563 78888888888875 6643 77888888888888 477774 543 3477888888888775 77
Q ss_pred ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.+|...+. ...|++|.+++.. ....+... .+++++..+.+.+ .+++.+|..++.+..++.++++.++
T Consensus 200 ~l~~~~~~--------~~~L~~l~~~~N~-~~~~~~~~--~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 200 DLPPEIEL--------LSALEELDLSNNS-IIELLSSL--SNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred cCchhhhh--------hhhhhhhhhcCCc-ceecchhh--hhcccccccccCC-ceeeeccchhccccccceecccccc
Confidence 77775432 4558888888653 33333333 5677777777554 5577777888888888888877665
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.88 E-value=1.2e-06 Score=80.90 Aligned_cols=136 Identities=23% Similarity=0.266 Sum_probs=91.8
Q ss_pred hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
+.|.....|.+..|.|+.+ .+.+|+.+++||.|||++|.|+. |.+..|..+.+|..|-+.
T Consensus 64 ~LP~~tveirLdqN~I~~i--------------P~~aF~~l~~LRrLdLS~N~Is~------I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSI--------------PPGAFKTLHRLRRLDLSKNNISF------IAPDAFKGLASLLSLVLY 123 (498)
T ss_pred cCCCcceEEEeccCCcccC--------------Chhhccchhhhceecccccchhh------cChHhhhhhHhhhHHHhh
Confidence 3455555666666666553 34678888888888888888886 444458888888887777
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccE
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEI 363 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~ 363 (402)
+.|+++. +|...+++|..|+.|.+.-|. +.-++... +..+++|..|.+.+. +++.++.+.. ..+.++++
T Consensus 124 g~NkI~~-l~k~~F~gL~slqrLllNan~-i~Cir~~a-------l~dL~~l~lLslyDn-~~q~i~~~tf-~~l~~i~t 192 (498)
T KOG4237|consen 124 GNNKITD-LPKGAFGGLSSLQRLLLNANH-INCIRQDA-------LRDLPSLSLLSLYDN-KIQSICKGTF-QGLAAIKT 192 (498)
T ss_pred cCCchhh-hhhhHhhhHHHHHHHhcChhh-hcchhHHH-------HHHhhhcchhcccch-hhhhhccccc-cchhccch
Confidence 7678888 477778888888888886664 55554431 122777777777773 6777776432 45667777
Q ss_pred EEeecCc
Q 038022 364 LLVCGCD 370 (402)
Q Consensus 364 L~l~~c~ 370 (402)
+.+...+
T Consensus 193 lhlA~np 199 (498)
T KOG4237|consen 193 LHLAQNP 199 (498)
T ss_pred HhhhcCc
Confidence 6654444
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.1e-06 Score=79.14 Aligned_cols=136 Identities=19% Similarity=0.213 Sum_probs=88.3
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--c
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--I 317 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--l 317 (402)
....+++++.|||+.|-+.+ |. .+-. ....|++|+.|+|+. |.+..-.....-..+++|+.|.|+.|. +.. +
T Consensus 141 ~~k~~~~v~~LdLS~NL~~n-w~--~v~~-i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V 214 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHN-WF--PVLK-IAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDV 214 (505)
T ss_pred hhhhCCcceeecchhhhHHh-HH--HHHH-HHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccCC-CCHHHH
Confidence 46789999999999998875 32 1222 246788999999998 677652112223468899999999996 331 1
Q ss_pred ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc--cccCCCCcCCcCCCCC
Q 038022 318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA--ADLSQNNENDQLGIPA 392 (402)
Q Consensus 318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~~~~l~~~~~~~ 392 (402)
-.-.. .||+|+.|+|..+..+..-... ...++.|+.|+|++++ +-.+| .-.+....|..++++.
T Consensus 215 ~~~~~--------~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 215 QWILL--------TFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred HHHHH--------hCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCc-ccccccccccccccchhhhhccc
Confidence 11111 2899999999987422221111 1346789999999976 55566 3456666666666644
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.70 E-value=2.6e-06 Score=78.70 Aligned_cols=123 Identities=15% Similarity=0.283 Sum_probs=96.5
Q ss_pred CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccc
Q 038022 247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQV 326 (402)
Q Consensus 247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~ 326 (402)
-..++|..|.|+. +|+..|+.+++||.|||+. |+++.+-|.. +.+|++|-.|.+-+++.++++|....+
T Consensus 69 tveirLdqN~I~~------iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~--- 137 (498)
T KOG4237|consen 69 TVEIRLDQNQISS------IPPGAFKTLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG--- 137 (498)
T ss_pred ceEEEeccCCccc------CChhhccchhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh---
Confidence 4668899999996 9999999999999999999 7999988887 789999999999887789999986432
Q ss_pred cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCc
Q 038022 327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQ 387 (402)
Q Consensus 327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~ 387 (402)
.+.+|+.|.+.-+ ++..+.... ...+++|..|.+.+ +++++++. .+..+...+.
T Consensus 138 ----gL~slqrLllNan-~i~Cir~~a-l~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 138 ----GLSSLQRLLLNAN-HINCIRQDA-LRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred ----hHHHHHHHhcChh-hhcchhHHH-HHHhhhcchhcccc-hhhhhhccccccchhccch
Confidence 2788888877754 666666543 25788898899988 44888887 4444444433
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.3e-05 Score=48.72 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=18.0
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
+|++|++++ ++++.+ |.. +++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~-N~i~~l-~~~-l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDL-PPE-LSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSH-GGH-GTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccC-CCCccc-Cch-HhCCCCCCEEEecCCC-CCCC
Confidence 455555555 355552 333 4555555555555553 4444
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=5.2e-05 Score=48.32 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI 291 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~ 291 (402)
++|++|++++|.++. +|.. +++|++|++|++++ +.++.+
T Consensus 1 ~~L~~L~l~~N~i~~------l~~~-l~~l~~L~~L~l~~-N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD------LPPE-LSNLPNLETLNLSN-NPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS------HGGH-GTTCTTSSEEEETS-SCCSBE
T ss_pred CcceEEEccCCCCcc------cCch-HhCCCCCCEEEecC-CCCCCC
Confidence 579999999999996 8885 99999999999999 488874
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=5.1e-05 Score=72.19 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=48.4
Q ss_pred CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022 272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP 351 (402)
Q Consensus 272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~ 351 (402)
..+.+++.|++++| .++. +|. --.+|++|.+++|.+++.+|... .++|+.|++++|.++..+|.
T Consensus 49 ~~~~~l~~L~Is~c-~L~s-LP~----LP~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDC-DIES-LPV----LPNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCC-CCcc-cCC----CCCCCcEEEccCCCCcccCCchh----------hhhhhheEccCccccccccc
Confidence 34688999999998 7888 462 12479999999999998888531 35788888888776666653
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=6.6e-05 Score=77.11 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=84.2
Q ss_pred hhhccccccccCCCccccccCCceEEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY 284 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~ 284 (402)
..+++++.+.+... + +..-|..+ ..+|+|+.|.++|-.+..- ++-. ...+++||+.||+|+
T Consensus 121 r~nL~~LdI~G~~~--~-----------s~~W~~kig~~LPsL~sL~i~~~~~~~~----dF~~-lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--F-----------SNGWPKKIGTMLPSLRSLVISGRQFDND----DFSQ-LCASFPNLRSLDISG 182 (699)
T ss_pred HHhhhhcCccccch--h-----------hccHHHHHhhhCcccceEEecCceecch----hHHH-HhhccCccceeecCC
Confidence 47777777764221 1 11123334 4589999999998776531 1222 246889999999999
Q ss_pred cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccccee--C---CCCCCCCCC
Q 038022 285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL--Y---PGMHTSEWP 359 (402)
Q Consensus 285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l--~---~~~~~~~l~ 359 (402)
+ +++.+ +.++.|+||+.|.+.+-. ++.-.. -..++.+++|+.||++.-.+...- . .+. ...+|
T Consensus 183 T-nI~nl---~GIS~LknLq~L~mrnLe-~e~~~~------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~Lp 250 (699)
T KOG3665|consen 183 T-NISNL---SGISRLKNLQVLSMRNLE-FESYQD------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLP 250 (699)
T ss_pred C-CccCc---HHHhccccHHHHhccCCC-CCchhh------HHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCc
Confidence 5 78874 348999999999987543 222111 113445999999999965433222 0 011 13578
Q ss_pred cccEEEeecCc
Q 038022 360 ALEILLVCGCD 370 (402)
Q Consensus 360 ~L~~L~l~~c~ 370 (402)
.|+.|+.++-.
T Consensus 251 eLrfLDcSgTd 261 (699)
T KOG3665|consen 251 ELRFLDCSGTD 261 (699)
T ss_pred cccEEecCCcc
Confidence 89988888643
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.22 E-value=6.1e-06 Score=81.85 Aligned_cols=122 Identities=23% Similarity=0.293 Sum_probs=67.9
Q ss_pred hhhhccccccccCCCccc---cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022 205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL 277 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L 277 (402)
.|.++..+++++|.+..+ +.-.+.+ .|||+++-+ ..+..+++|+.|||++|.+.. +|.-....+. |
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~------vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH------VPQLSMVGCK-L 234 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcc------ccccchhhhh-h
Confidence 366777788887766543 1111222 455655443 345666777777777777764 6652222332 7
Q ss_pred cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccc
Q 038022 278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLP 344 (402)
Q Consensus 278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~ 344 (402)
+.|.+++ |.++.+ - . +.+|.+|+.||+++|- +.+-.. . .+...+..|+.|.|.+++
T Consensus 235 ~~L~lrn-N~l~tL-~-g-ie~LksL~~LDlsyNl-l~~hse-L-----~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 235 QLLNLRN-NALTTL-R-G-IENLKSLYGLDLSYNL-LSEHSE-L-----EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeecc-cHHHhh-h-h-HHhhhhhhccchhHhh-hhcchh-h-----hHHHHHHHHHHHhhcCCc
Confidence 7777777 566653 2 2 5677777777777663 222110 0 022225566666776654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=2.9e-05 Score=69.45 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=56.6
Q ss_pred CCccEEEEeccCCCcccc-chHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCC-
Q 038022 275 QSLTRLVVWYCDKLKYIF-VASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG- 352 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~-p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~- 352 (402)
.+|+.|+++||.+--+.- -......+++|.+||+++|..++. .-. ..++.|+.|++|.++.|-. +++.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~-----~~~~kf~~L~~lSlsRCY~---i~p~~ 355 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF-----QEFFKFNYLQHLSLSRCYD---IIPET 355 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHH-----HHHHhcchheeeehhhhcC---CChHH
Confidence 356777777754221110 112346799999999999986654 111 1233499999999999853 3332
Q ss_pred -CCCCCCCcccEEEeecCccc
Q 038022 353 -MHTSEWPALEILLVCGCDKL 372 (402)
Q Consensus 353 -~~~~~l~~L~~L~l~~c~~l 372 (402)
+.....|+|.+|++.+|-.=
T Consensus 356 ~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeeccCcceEEEEeccccCc
Confidence 22467899999999998643
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.18 E-value=0.00016 Score=66.14 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred HhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccceeCCC----CCCCCCCcccEEEeecCcc
Q 038022 297 IGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG----MHTSEWPALEILLVCGCDK 371 (402)
Q Consensus 297 i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~----~~~~~l~~L~~L~l~~c~~ 371 (402)
+..+++|+.||+.+|. ++.-- ..+.. ++..++.|+.|++++| .++.=-.. ......|+|++|.+.+|.-
T Consensus 209 l~~~~~LevLdl~DNt-ft~egs~~Lak----aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNT-FTLEGSVALAK----ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhCCcceeeecccch-hhhHHHHHHHH----Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 3556777777776665 22111 11111 2222667777777777 33321100 0012356777777776552
Q ss_pred cc----ccccccCCCCcCCcCCCCCCCC
Q 038022 372 LK----IIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 372 l~----~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
-. .+-..++.++.|.++++++|..
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 21 1333445567777777777654
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.00011 Score=71.88 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=45.2
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccc-cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNE-KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY 284 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~ 284 (402)
...+..+.+.+|.+..+ .. +..+++|++|++++|.|+. +.. +..+..|+.|++++
T Consensus 94 ~~~l~~l~l~~n~i~~i----------------~~~l~~~~~L~~L~ls~N~I~~------i~~--l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI----------------ENLLSSLVNLQVLDLSFNKITK------LEG--LSTLTLLKELNLSG 149 (414)
T ss_pred ccceeeeeccccchhhc----------------ccchhhhhcchheecccccccc------ccc--hhhccchhhheecc
Confidence 35667777777777765 22 4455566666666666554 332 44455555666655
Q ss_pred cCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
|.++.+ .. +..+++|+.+++++|. +..+.
T Consensus 150 -N~i~~~-~~--~~~l~~L~~l~l~~n~-i~~ie 178 (414)
T KOG0531|consen 150 -NLISDI-SG--LESLKSLKLLDLSYNR-IVDIE 178 (414)
T ss_pred -Ccchhc-cC--CccchhhhcccCCcch-hhhhh
Confidence 455542 22 3345555555555554 44443
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=3.1e-05 Score=61.44 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=77.7
Q ss_pred CCCEEeecCcccccccccCCCCCc--ccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAA--VFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA 323 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~--~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 323 (402)
-+..++|++|.+-. +++. .+....+|+..+|++ |.++. +|..+..+++.+++|++++|. +.++|.+...
T Consensus 28 E~h~ldLssc~lm~------i~davy~l~~~~el~~i~ls~-N~fk~-fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aa 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY------IADAVYMLSKGYELTKISLSD-NGFKK-FPKKFTIKFPTATTLNLANNE-ISDVPEELAA 98 (177)
T ss_pred HhhhcccccchhhH------HHHHHHHHhCCceEEEEeccc-chhhh-CCHHHhhccchhhhhhcchhh-hhhchHHHhh
Confidence 46677888887653 3331 245667788889998 78888 688777778889999998775 8888887655
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD 378 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 378 (402)
+|.|+.|+++.+ .+...|..+ ..+.+|-.|+.-+. ....+|-.
T Consensus 99 --------m~aLr~lNl~~N-~l~~~p~vi--~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 99 --------MPALRSLNLRFN-PLNAEPRVI--APLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred --------hHHhhhcccccC-ccccchHHH--HHHHhHHHhcCCCC-ccccCcHH
Confidence 888999988875 566666544 34556666665543 34555544
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0011 Score=56.25 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ 325 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 325 (402)
+...+|+++|.+.. ++. ++.+++|.+|.+.. |.++.+-|. .-..+++|..|.+.+|. +.++.+-.
T Consensus 43 ~~d~iDLtdNdl~~------l~~--lp~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnNs-i~~l~dl~---- 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------LDN--LPHLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNNS-IQELGDLD---- 107 (233)
T ss_pred ccceecccccchhh------ccc--CCCccccceEEecC-Ccceeeccc-hhhhccccceEEecCcc-hhhhhhcc----
Confidence 45566666666653 554 66666677777766 566665443 23456667777776553 44443211
Q ss_pred ccccccccccceeecccccccceeCCC--CCCCCCCcccEEEeec
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPALEILLVCG 368 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L~~L~l~~ 368 (402)
+...+|+|++|.+-+.+ .+.-..- ..+..+|+|++|+..+
T Consensus 108 --pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 --PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred --hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 12226666666665542 2221110 0123556666666654
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00029 Score=63.19 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=50.9
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCccc-CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVF-PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE 316 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i-~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~ 316 (402)
...+.+|+.|++|+++.|.+.. .+-. . -.+.+|+.|-|.+ +.+...-..+....+|.+++|.++.|. +..
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s-----~I~~--lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~-~rq 160 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSS-----DIKS--LPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNS-LRQ 160 (418)
T ss_pred HHHHhcCccceEeeccCCcCCC-----cccc--CcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccch-hhh
Confidence 3556899999999999999874 2221 2 2456899999988 566654344557789999999998874 444
Q ss_pred c
Q 038022 317 I 317 (402)
Q Consensus 317 l 317 (402)
+
T Consensus 161 ~ 161 (418)
T KOG2982|consen 161 L 161 (418)
T ss_pred h
Confidence 3
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0019 Score=54.87 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=64.9
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
..|..++.|..|.+++|.|+. +.+..-..+++|+.|.|.+ |++..+....-...+|.|++|.+-+|. +++-.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~------I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~ 129 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITR------IDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKK 129 (233)
T ss_pred ccCCCccccceEEecCCccee------eccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhccc
Confidence 567788899999999999997 5554345677899999999 677664222224688999999998876 44433
Q ss_pred cccccccccccccccccceeecccc
Q 038022 319 SENRADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
.--. ..+..+|+|+.|+..+-
T Consensus 130 ~YR~----yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRL----YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred Ccee----EEEEecCcceEeehhhh
Confidence 2110 12233899999987754
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=0.00033 Score=68.40 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=82.2
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.+..+++|..|++.+|.+.+ +... +..+++|++|++++ |.++.+-+ +..++.|+.|++++|. +..+..
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~------i~~~-l~~~~~L~~L~ls~-N~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~ 157 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEK------IENL-LSSLVNLQVLDLSF-NKITKLEG---LSTLTLLKELNLSGNL-ISDISG 157 (414)
T ss_pred ccccccceeeeeccccchhh------cccc-hhhhhcchheeccc-cccccccc---hhhccchhhheeccCc-chhccC
Confidence 46788999999999999986 6653 77899999999999 79998643 4678889999999996 777754
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
... +++|+.++++++ .+..+.... ...+++|+.+.+.++.
T Consensus 158 ~~~---------l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 158 LES---------LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred Ccc---------chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 322 788899998876 566665520 1456777777776644
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.80 E-value=0.00011 Score=73.15 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=10.6
Q ss_pred hhhccccccccCCCccc
Q 038022 206 LRKCNAISLRNNKESTT 222 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~ 222 (402)
.+.+|++-+.+-++..+
T Consensus 108 F~sLr~LElrg~~L~~~ 124 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTA 124 (1096)
T ss_pred ccceeeEEecCcchhhh
Confidence 36667777766666553
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.79 E-value=5.2e-05 Score=60.21 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=75.9
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.+....+|...+|++|.+.. +|...-..++.+..|++++ |.+.. .|.. +..++.|+.|+++.|. +...|.
T Consensus 48 ~l~~~~el~~i~ls~N~fk~------fp~kft~kf~t~t~lNl~~-neisd-vPeE-~Aam~aLr~lNl~~N~-l~~~p~ 117 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKK------FPKKFTIKFPTATTLNLAN-NEISD-VPEE-LAAMPALRSLNLRFNP-LNAEPR 117 (177)
T ss_pred HHhCCceEEEEecccchhhh------CCHHHhhccchhhhhhcch-hhhhh-chHH-HhhhHHhhhcccccCc-cccchH
Confidence 34566778888999999996 9987445667899999999 79999 5888 7899999999999886 667776
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
.+.. +.+|-.|+..+. ....++.....+..+.|..+
T Consensus 118 vi~~--------L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 118 VIAP--------LIKLDMLDSPEN-ARAEIDVDLFYSSLPALIKL 153 (177)
T ss_pred HHHH--------HHhHHHhcCCCC-ccccCcHHHhccccHHHHHh
Confidence 5432 556666666553 45555544333444555544
No 57
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.57 E-value=0.034 Score=60.11 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCCchhHHH
Q 038022 11 NLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETY 90 (402)
Q Consensus 11 ~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~~i~ 90 (402)
+|+.+|+.++|....+.... .+...++.+.|+|.|+++..++..+...... -......+.... ...+.
T Consensus 185 ~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~ 252 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGIN-------ASHLS 252 (903)
T ss_pred CCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCC-------chhHH
Confidence 89999999999987765332 2456789999999999999998887544211 111112221100 12344
Q ss_pred HHHhh-cccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhccccc-cC-CCC
Q 038022 91 SSIEL-SFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLE-GD-SNE 167 (402)
Q Consensus 91 ~~l~l-sy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~-~~~ 167 (402)
..+.- .++.||++ .+..+...|+++ .|+.+ +...- .... .+.+.+.+|.+++++.. .+ ...
T Consensus 253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~~l-----~~~~--------~~~~~L~~l~~~~l~~~~~~~~~~ 316 (903)
T PRK04841 253 DYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIVRV-----TGEE--------NGQMRLEELERQGLFIQRMDDSGE 316 (903)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHHHH-----cCCC--------cHHHHHHHHHHCCCeeEeecCCCC
Confidence 44433 37899999 799999999998 44433 22221 1111 12346999999999753 23 334
Q ss_pred eEEccHHHHHHHHHHH
Q 038022 168 EFSMHDVVRDVAISVA 183 (402)
Q Consensus 168 ~~~mhdlv~~~a~~i~ 183 (402)
.|+.|++++++.+...
T Consensus 317 ~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 317 WFRYHPLFASFLRHRC 332 (903)
T ss_pred EEehhHHHHHHHHHHH
Confidence 7999999999998764
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.55 E-value=0.00066 Score=69.90 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=87.5
Q ss_pred CCCCCEEeecCccc-ccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccc
Q 038022 244 LPNLEALEISDINV-DKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENR 322 (402)
Q Consensus 244 l~~L~~L~l~~~~~-~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~ 322 (402)
-.+|++|+++|... .. .-|...-..||+|+.|.+++ ..+..--=.....++|||..||+|+++ ++.+ .+
T Consensus 121 r~nL~~LdI~G~~~~s~-----~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-- 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN-----GWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-- 190 (699)
T ss_pred HHhhhhcCccccchhhc-----cHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HH--
Confidence 46899999998543 22 12333235789999999998 455431112346889999999999985 7776 22
Q ss_pred cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc-------CCCCcCCcCCCCCCCC
Q 038022 323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL-------SQNNENDQLGIPAQQP 395 (402)
Q Consensus 323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------~~~~~l~~~~~~~~~~ 395 (402)
++.+++|+.|.+.++ .++....-....++++|+.||||.-... .-|.-+ ..+.+|+.+|.++..-
T Consensus 191 ------IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 191 ------ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ------HhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 334999999988876 3444332223478999999999874433 323111 1255777788776543
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0028 Score=56.04 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=18.8
Q ss_pred cCCCCCccEEEEeccC--CCccccchHHHhcCCccCeeeeeccc
Q 038022 271 FPHFQSLTRLVVWYCD--KLKYIFVASMIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 271 i~~l~~L~~L~L~~c~--~l~~~~p~~~i~~l~~L~~L~l~~~~ 312 (402)
+..|++|++|.++. | .+..-++.. +.++|+|++|++++|+
T Consensus 61 ~P~Lp~LkkL~lsd-n~~~~~~~l~vl-~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 61 FPKLPKLKKLELSD-NYRRVSGGLEVL-AEKAPNLKVLNLSGNK 102 (260)
T ss_pred CCCcchhhhhcccC-Ccccccccceeh-hhhCCceeEEeecCCc
Confidence 44455556666554 3 222212222 2344566666665554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00054 Score=60.96 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=76.0
Q ss_pred hhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccC
Q 038022 207 RKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD 286 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~ 286 (402)
.+++.+++.+..++.+ ..+.+|+.|++|.|+-|.|+. +-+ +..+++|+.|.|+. |
T Consensus 19 ~~vkKLNcwg~~L~DI----------------sic~kMp~lEVLsLSvNkIss------L~p--l~rCtrLkElYLRk-N 73 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI----------------SICEKMPLLEVLSLSVNKISS------LAP--LQRCTRLKELYLRK-N 73 (388)
T ss_pred HHhhhhcccCCCccHH----------------HHHHhcccceeEEeecccccc------chh--HHHHHHHHHHHHHh-c
Confidence 5566677777776654 456789999999999999985 665 78889999999998 6
Q ss_pred CCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceee
Q 038022 287 KLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLI 339 (402)
Q Consensus 287 ~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~ 339 (402)
.+..+--...+.+||+|+.|-|..|...+.-+..... ..+-.+|+|+.|+
T Consensus 74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 74 CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD 123 (388)
T ss_pred ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence 8887544466789999999999888755544433221 1222378888874
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.77 E-value=0.0034 Score=55.47 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=56.2
Q ss_pred cccCCCCCCCEEeecCc--ccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022 239 NEKVALPNLEALEISDI--NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE 316 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~ 316 (402)
..+-.|++|+.|.++.| .+.+ .++-. .-.+++|++|++++ |+++.+-...-...+.+|..|++..|. .+.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~-----~l~vl-~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~ 130 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSG-----GLEVL-AEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS-VTN 130 (260)
T ss_pred ccCCCcchhhhhcccCCcccccc-----cceeh-hhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC-ccc
Confidence 44567788899999988 4444 45542 44558899999998 677642111114577888888888776 333
Q ss_pred cccccccccccccccccccceeecccc
Q 038022 317 IISENRADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 317 lp~~~~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
+-.-- ...+-.+++|+.|+-.+.
T Consensus 131 l~dyr----e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 131 LDDYR----EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccHH----HHHHHHhhhhcccccccc
Confidence 22111 011222677777765554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.00072 Score=60.19 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~ 312 (402)
+.+.+.|+..|+.++. +. ...+++.|.+|.|+- |+++.+-| +..+++|++|+|..|.
T Consensus 18 l~~vkKLNcwg~~L~D------Is--ic~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------IS--ICEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCCccH------HH--HHHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc
Confidence 3444555555555543 22 234566666666666 56665433 3456666666666553
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0078 Score=31.88 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=14.8
Q ss_pred cccEEEeecCccccccccccCC
Q 038022 360 ALEILLVCGCDKLKIIAADLSQ 381 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~~~~ 381 (402)
+|++|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677788777 46677777654
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.26 E-value=0.0044 Score=56.95 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=37.6
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchH----HHhcCCccCeeeeeccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVAS----MIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~----~i~~l~~L~~L~l~~~~ 312 (402)
..+..+++|++|||..|.|+..-. ..+.. .++.+++|+.|++++| .++.-...+ +-.+.|+|++|.+.+|.
T Consensus 207 eal~~~~~LevLdl~DNtft~egs-~~Lak-aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGS-VALAK-ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHH-HHHHH-Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 456677777777777776653000 00111 1445556777777776 344322111 12346677777777665
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.12 E-value=0.0011 Score=62.28 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
..|+.|.+.|+.-.+. .++-. .-...+++.+|.+.+|.++++..-.++...+++|++|++..|.+++...-. ...
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt-~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRT-FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCc---chhhH-HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3678888888764320 01111 135778899999999998887655565678999999999998888765432 111
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK 373 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 373 (402)
.+++|++|+++.|+.+++=........+..|+.+...||..++
T Consensus 214 -------gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 214 -------GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred -------hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 1999999999999888762222223455567777777777544
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.03 E-value=0.015 Score=28.63 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=9.3
Q ss_pred CcccEEEeecCccccccc
Q 038022 359 PALEILLVCGCDKLKIIA 376 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp 376 (402)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777777 67666
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.02 Score=51.81 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc
Q 038022 300 LKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA 377 (402)
Q Consensus 300 l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 377 (402)
+||+..+-+..|+ ++..-...+. ..+|.+--|+|+. .++.++..-.....||+|..|.+++.|-...+-.
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~s------e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGS------EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCc-ccchhhcccC------CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 5566666665554 4443332221 1155555666664 3565555433345788888888888876665543
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.63 E-value=0.0026 Score=59.77 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=77.3
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcc----cCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAV----FPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE 316 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~----i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~ 316 (402)
-.++++++.|.+.++.. +.+.. -..++.|++|++..|..++...-......+++|++|++++|..+..
T Consensus 160 ~~~CpnIehL~l~gc~~--------iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKK--------ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhhCCchhhhhhhccee--------ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 36788888888888762 33221 2467889999999999998854443567899999999999987665
Q ss_pred cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc
Q 038022 317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA 376 (402)
Q Consensus 317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 376 (402)
.+... -.....+++.+.+.+|..++.=.........+-+.++++..|..++.-.
T Consensus 232 --~gv~~----~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 232 --NGVQA----LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred --CcchH----HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence 11110 0011555777777777554311111112445566777777887766543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.52 E-value=0.019 Score=30.35 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=6.1
Q ss_pred CCEEeecCcccc
Q 038022 247 LEALEISDINVD 258 (402)
Q Consensus 247 L~~L~l~~~~~~ 258 (402)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.30 E-value=0.18 Score=39.97 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=56.9
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.|..+++|+.+.+.. .+.. ++...|..+.+|+.+++.+ .+..+ +...+.++++|+.+.+.. .+..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~------I~~~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~ 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKK------IGENAFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD 74 (129)
T ss_dssp TTTT-TT--EEEETS-T--E------E-TTTTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T
T ss_pred HHhCCCCCCEEEECC-CeeE------eChhhcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc
Confidence 466777888888875 4543 6666677887888888876 36664 444466777888888854 3555554
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA 377 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 377 (402)
.. +..+++|+.+.+.. ++..++.... .+. +|+.+.+.+ .+..++.
T Consensus 75 ~~-------F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 75 NA-------FSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIEE 119 (129)
T ss_dssp TT-------TTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS---
T ss_pred cc-------ccccccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEECC
Confidence 31 22267788887753 4666766543 344 777776643 3455544
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.29 E-value=0.051 Score=48.62 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=50.9
Q ss_pred HHHHHHHHhccccccCCCCeEEccHHHHHHHHHHHhhcceEEEeccCCCCCCCchhhhhhccccccccCCCccccccCCc
Q 038022 149 ASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSE 228 (402)
Q Consensus 149 ~~l~~L~~~~ll~~~~~~~~~~mhdlv~~~a~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 228 (402)
.++.+|...--+...+-.+.+.=-.-++.++.-|+..+...+.--..........+.+.+++.+. ..+..||+
T Consensus 21 ~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll-------~aLlkcp~ 93 (388)
T COG5238 21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLL-------KALLKCPR 93 (388)
T ss_pred HHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHH-------HHHhcCCc
Confidence 34555554333333443343433455677777776655443321111101111112223332222 11456777
Q ss_pred e-EEccccccc---------cccCCCCCCCEEeecCcccc
Q 038022 229 I-TLDISTLLF---------NEKVALPNLEALEISDINVD 258 (402)
Q Consensus 229 L-~L~l~~~~~---------~~l~~l~~L~~L~l~~~~~~ 258 (402)
+ .+|||++-+ +.+++-+.|..|.+++|.+-
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 7 677776432 44677778888888887754
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.78 E-value=0.017 Score=57.38 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL 314 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l 314 (402)
+++|++|.+.+|..++...-......+++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 55667776666654544322333455666777777766654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.013 Score=49.91 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=6.0
Q ss_pred HHHHHHHHhhc
Q 038022 176 RDVAISVACRH 186 (402)
Q Consensus 176 ~~~a~~i~~~e 186 (402)
|..|-+|.+.-
T Consensus 61 rAaAe~Il~~G 71 (221)
T KOG3864|consen 61 RAAAEWILHCG 71 (221)
T ss_pred hHHHHHHHhcC
Confidence 55566665443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.0092 Score=50.84 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT 355 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~ 355 (402)
.++.++-++| .+... -...+.+++.++.|.+.+|..+..---+.-. + ..++|+.|+|++|+.+++--.. .+
T Consensus 102 ~IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~--~~~~L~~L~lsgC~rIT~~GL~-~L 172 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLG----G--LAPSLQDLDLSGCPRITDGGLA-CL 172 (221)
T ss_pred eEEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHHhc----c--cccchheeeccCCCeechhHHH-HH
Confidence 4788888885 67664 3333788999999999988755442211000 0 2899999999999998865432 23
Q ss_pred CCCCcccEEEeecCccccc
Q 038022 356 SEWPALEILLVCGCDKLKI 374 (402)
Q Consensus 356 ~~l~~L~~L~l~~c~~l~~ 374 (402)
..+++|+.|.|++.+....
T Consensus 173 ~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhhhhHHHHhcCchhhhc
Confidence 6789999999988665443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.34 E-value=0.43 Score=37.75 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
+|...|....+|+.+.+.. .++.+ +...+.++.+|+.+.+... +..++... +..+++|+.+.+.+ .
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~~~-------F~~~~~l~~i~~~~--~ 68 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGDNA-------FSNCKSLESITFPN--N 68 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-TTT-------TTT-TT-EEEEETS--T
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccceee-------eecccccccccccc--c
Confidence 5666788899999999975 57775 4444788889999999763 77776542 23377899999975 6
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCC
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPA 392 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~ 392 (402)
+..++... ...+++|+.+.+.. .+..++...-.-..++.+.+..
T Consensus 69 ~~~i~~~~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 69 LKSIGDNA-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp T-EE-TTT-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT
T ss_pred cccccccc-ccccccccccccCc--cccEEchhhhcCCCceEEEECC
Confidence 77777654 25689999999854 3666666443333666655543
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.48 E-value=0.7 Score=43.59 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=79.6
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCC
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEG 84 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 84 (402)
..+++++++.++..+++.+.++.....-+ .+....|++.|+|.|-.+..+...+. .|..+.. ..... ..
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~~~I~--~~ 241 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---DGVIT--KE 241 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---CCCCC--HH
Confidence 36789999999999999999843222111 35788999999999965555444321 2221110 01110 00
Q ss_pred chhHHHHHHhhcccCCCcchhhhHHh-hhccCC-CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHH-HHHHhcccc
Q 038022 85 VSAETYSSIELSFNQLKGEQLKKIFL-LCSLMG-NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVH-ELRDSCLLL 161 (402)
Q Consensus 85 ~~~~i~~~l~lsy~~L~~~~lk~cfl-~~s~fp-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 161 (402)
.-......+...|..|+..+ +.-+. ....|+ ..+..+.+.... ++ ....+++ .++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-g~-------~~~~~~~----~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-GE-------ERDTIED----VYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-CC-------CcchHHH----HhhHHHHHcCCcc
Confidence 12234455667778888774 66664 566777 667777665443 11 1122333 355 788999986
Q ss_pred cc
Q 038022 162 EG 163 (402)
Q Consensus 162 ~~ 163 (402)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 43
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.73 E-value=2.1 Score=39.78 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=77.7
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCC
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEG 84 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 84 (402)
..+++++++.++..+++.+.++.....-+ .+....|++.|+|.|-.+..++..+ |..+. ....... . ..
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~i-t-~~ 220 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKII-N-RD 220 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCc-C-HH
Confidence 35789999999999999999842222111 3567889999999997665555432 22111 0111100 0 00
Q ss_pred chhHHHHHHhhcccCCCcchhhhHHh-hhccCC-CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHH-HHHHhcccc
Q 038022 85 VSAETYSSIELSFNQLKGEQLKKIFL-LCSLMG-NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVH-ELRDSCLLL 161 (402)
Q Consensus 85 ~~~~i~~~l~lsy~~L~~~~lk~cfl-~~s~fp-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 161 (402)
.-......+...|..++.++ +.-+. ..+.+. ..++.+.+.... |- ....++..++ .|++++++.
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEID-RKLLSVLIEQFQGGPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCCCcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcc
Confidence 01223333566778888875 55555 446666 556665554432 11 1223444577 599999996
Q ss_pred cc
Q 038022 162 EG 163 (402)
Q Consensus 162 ~~ 163 (402)
..
T Consensus 288 ~~ 289 (305)
T TIGR00635 288 RT 289 (305)
T ss_pred cC
Confidence 33
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.98 E-value=0.053 Score=53.75 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCCCCCCEEeecCcccccccccCC--CCCcccCCCCCccEEEEecc-CCCccccc---hHHHhcCCccCeeeeecccccc
Q 038022 242 VALPNLEALEISDINVDKIWHYNE--IPAAVFPHFQSLTRLVVWYC-DKLKYIFV---ASMIGSLKQLQHLDIRFCEDLQ 315 (402)
Q Consensus 242 ~~l~~L~~L~l~~~~~~~~~~~~~--lp~~~i~~l~~L~~L~L~~c-~~l~~~~p---~~~i~~l~~L~~L~l~~~~~l~ 315 (402)
..+++|+.|.+.++.-.. . +-. .....++|+.|++++| ..... .+ ......+++|+.|++++|..++
T Consensus 185 ~~~~~L~~l~l~~~~~~~-----~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKIT-----DDSLDA-LALKCPNLEELDLSGCCLLITL-SPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hhCchhhHhhhcccccCC-----hhhHHH-HHhhCchhheecccCccccccc-chhHhhhhhhhcCCcCccchhhhhccC
Confidence 347888888887764321 1 111 2567889999999983 33222 12 2234667999999999987544
Q ss_pred ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022 316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK 373 (402)
Q Consensus 316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 373 (402)
+.--..- ...+++|++|.+.+|..++.-........+++|++|++++|..++
T Consensus 258 d~~l~~l------~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 258 DIGLSAL------ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred chhHHHH------HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 3321110 011789999999999876544333334578899999999999873
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.67 E-value=0.25 Score=27.11 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=9.2
Q ss_pred CCCCEEeecCccccc
Q 038022 245 PNLEALEISDINVDK 259 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~ 259 (402)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666664
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.67 E-value=0.25 Score=27.11 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=9.2
Q ss_pred CCCCEEeecCccccc
Q 038022 245 PNLEALEISDINVDK 259 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~ 259 (402)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666664
No 81
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.48 E-value=4.2 Score=36.85 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=43.2
Q ss_pred ceEeccCCCHHHHHHHHHHhh---CCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMA---GDDVENRELKSTAIDVARACGGLPIALSTVAKAL 59 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L 59 (402)
..+.+.+++.+|..+++...+ +......--.+..+.|++.|+|.|..+..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 357899999999999999877 2211112224788999999999999999998887
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.53 E-value=1.4 Score=39.66 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=35.7
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCc---ccCCCCCccEEEEeccCCCc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAA---VFPHFQSLTRLVVWYCDKLK 289 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~---~i~~l~~L~~L~L~~c~~l~ 289 (402)
.+.+-+|++|+..+||.|-|.. ..|.. .|++-+.|.+|.+++| ++.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~-----~~~e~L~d~is~~t~l~HL~l~Nn-GlG 133 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGS-----EFPEELGDLISSSTDLVHLKLNNN-GLG 133 (388)
T ss_pred HHHHhcCCcceeeeccccccCc-----ccchHHHHHHhcCCCceeEEeecC-CCC
Confidence 4677899999999999999875 45542 3567788999999985 554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.38 E-value=0.9 Score=24.89 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=11.4
Q ss_pred CCcccEEEeecCcccc
Q 038022 358 WPALEILLVCGCDKLK 373 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~ 373 (402)
+++|+.|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3577777788877665
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.17 E-value=2.5 Score=22.47 Aligned_cols=10 Identities=20% Similarity=0.089 Sum_probs=4.0
Q ss_pred CCccEEEEec
Q 038022 275 QSLTRLVVWY 284 (402)
Q Consensus 275 ~~L~~L~L~~ 284 (402)
++|++|+|++
T Consensus 2 ~~L~~L~l~~ 11 (24)
T PF13516_consen 2 PNLETLDLSN 11 (24)
T ss_dssp TT-SEEE-TS
T ss_pred CCCCEEEccC
Confidence 3455555555
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.22 E-value=0.22 Score=43.69 Aligned_cols=83 Identities=10% Similarity=0.130 Sum_probs=39.5
Q ss_pred CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc
Q 038022 242 VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN 321 (402)
Q Consensus 242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~ 321 (402)
...+.-.+||++.|.+.. +-.. |..++.|..|+++. +.+.. +|.. ++.+..+..++.-.| ++...|.+.
T Consensus 39 ~~~kr~tvld~~s~r~vn------~~~n-~s~~t~~~rl~~sk-nq~~~-~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN------LGKN-FSILTRLVRLDLSK-NQIKF-LPKD-AKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred hccceeeeehhhhhHHHh------hccc-hHHHHHHHHHhccH-hhHhh-Chhh-HHHHHHHHHHHhhcc-chhhCCccc
Confidence 344444555555555443 3332 44455555555555 44444 3444 345555555554333 355555554
Q ss_pred ccccccccccccccceeecccc
Q 038022 322 RADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 322 ~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
+. .|.++.+++.+.
T Consensus 108 ~k--------~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 108 KK--------EPHPKKNEQKKT 121 (326)
T ss_pred cc--------cCCcchhhhccC
Confidence 44 455555544443
No 86
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.51 E-value=18 Score=38.18 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCCh-hhHHHHHHHhcCCCCCCCCCchhHH
Q 038022 11 NLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSL-HEWKNSLRELRTPSMVNFEGVSAET 89 (402)
Q Consensus 11 ~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~-~~W~~~l~~l~~~~~~~~~~~~~~i 89 (402)
.++.+|+-++|....+..-+. .-.+.+.+...|=+-|+..++-.+++.+. +.--..+. +..+-+
T Consensus 193 rf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-----------G~~~~l 257 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-----------GAASHL 257 (894)
T ss_pred cCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-----------chHHHH
Confidence 478889988888765433333 33566777778888888877777773322 21111111 001112
Q ss_pred HHHH-hhcccCCCcchhhhHHhhhccCC-CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhcccc--ccCC
Q 038022 90 YSSI-ELSFNQLKGEQLKKIFLLCSLMG-NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLL--EGDS 165 (402)
Q Consensus 90 ~~~l-~lsy~~L~~~~lk~cfl~~s~fp-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~--~~~~ 165 (402)
.+-| .--+|.||++ +|.-++-||+++ +. ++|+....+ ++.+..++++|..++++. -.+.
T Consensus 258 ~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~---~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 258 SDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN---DELCNALTG-------------EENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh---HHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCC
Confidence 2222 2346789998 799999999987 44 344443322 123445799999999996 3456
Q ss_pred CCeEEccHHHHHHHHHHH
Q 038022 166 NEEFSMHDVVRDVAISVA 183 (402)
Q Consensus 166 ~~~~~mhdlv~~~a~~i~ 183 (402)
++.|+.|.++.+|.+.-.
T Consensus 321 ~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CceeehhHHHHHHHHhhh
Confidence 678999999999987654
No 87
>COG3903 Predicted ATPase [General function prediction only]
Probab=69.15 E-value=21 Score=34.38 Aligned_cols=171 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred cceEeccCCCHH-HHHHHHHHhh---C-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHH----HHh
Q 038022 4 EDNFLINNLKEE-EAGRLLKMMA---G-DDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSL----REL 74 (402)
Q Consensus 4 ~~~~~l~~L~~~-~a~~Lf~~~a---~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l----~~l 74 (402)
+..+.+.+|+.- ++.++|...| + +-.....-...+.+|.++..|.|+||...+...+.-...+--.-+ ..+
T Consensus 133 e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll 212 (414)
T COG3903 133 EVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLL 212 (414)
T ss_pred cccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence 346677777766 7999999888 2 222333335788999999999999999999998876544322211 122
Q ss_pred cCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHH
Q 038022 75 RTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHEL 154 (402)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L 154 (402)
... .....-.+......+.+||.-|...+ +--|.-++.|.-.|+.+ ...|.+-|-.-. ........-+..+
T Consensus 213 ~~~-~r~a~~~~qtl~asl~ws~~lLtgwe-~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~-----~~~y~~~~a~~ll 283 (414)
T COG3903 213 TGG-ARLAVLRQQTLRASLDWSYALLTGWE-RALFGRLAVFVGGFDLG--LALAVAAGADVD-----VPRYLVLLALTLL 283 (414)
T ss_pred hcc-cccchhHHHhccchhhhhhHhhhhHH-HHHhcchhhhhhhhccc--HHHHHhcCCccc-----cchHHHHHHHHHH
Confidence 222 11111124457889999999999885 88888889988444443 334444433210 0111222336778
Q ss_pred HHhccccccC--CCCeEEccHHHHHHHHHHH
Q 038022 155 RDSCLLLEGD--SNEEFSMHDVVRDVAISVA 183 (402)
Q Consensus 155 ~~~~ll~~~~--~~~~~~mhdlv~~~a~~i~ 183 (402)
++.++...-+ ....++.-+-.|.++....
T Consensus 284 ~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 284 VDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888874222 2224566666666655443
No 88
>COG3899 Predicted ATPase [General function prediction only]
Probab=68.37 E-value=66 Score=34.75 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=93.7
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-------ChhhHHHHHHHhcCC
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGK-------SLHEWKNSLRELRTP 77 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-------~~~~W~~~l~~l~~~ 77 (402)
..+.|.||+..|.-.+.....+.....+ .+....|++|-+|.|+-+.-+-..+... +...|..-...+...
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~~~~--~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~ 289 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTKLLP--APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL 289 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCccccc--chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc
Confidence 4789999999999999988886643332 3668899999999999998888887642 233465433332211
Q ss_pred CCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHh
Q 038022 78 SMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDS 157 (402)
Q Consensus 78 ~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~ 157 (402)
+. .+.+...+..-.+.||.. -|...-..|++...|+.+.|...+.. .....+...++.|...
T Consensus 290 -----~~-~~~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~ 351 (849)
T COG3899 290 -----AT-TDAVVEFLAARLQKLPGT-TREVLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEG 351 (849)
T ss_pred -----hh-hHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhh
Confidence 11 223666788889999998 59999999999888888777776532 1233444455555555
Q ss_pred ccc
Q 038022 158 CLL 160 (402)
Q Consensus 158 ~ll 160 (402)
.++
T Consensus 352 lI~ 354 (849)
T COG3899 352 LIL 354 (849)
T ss_pred cee
Confidence 555
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.33 E-value=4.8 Score=22.19 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.6
Q ss_pred CCCEEeecCccccc
Q 038022 246 NLEALEISDINVDK 259 (402)
Q Consensus 246 ~L~~L~l~~~~~~~ 259 (402)
+|+.|++++|.++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 56677777777764
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.75 E-value=0.42 Score=41.95 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=70.5
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
+|-.-|..+...+.||++. +.+..+ -.. ++.+..|+.|+++.+. +..+|.+.+. ...+.++++.+ ++
T Consensus 33 ~~v~ei~~~kr~tvld~~s-~r~vn~-~~n-~s~~t~~~rl~~sknq-~~~~~~d~~q--------~~e~~~~~~~~-n~ 99 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSS-NRLVNL-GKN-FSILTRLVRLDLSKNQ-IKFLPKDAKQ--------QRETVNAASHK-NN 99 (326)
T ss_pred cchhhhhccceeeeehhhh-hHHHhh-ccc-hHHHHHHHHHhccHhh-HhhChhhHHH--------HHHHHHHHhhc-cc
Confidence 6644477888999999998 677763 444 5778899999999875 8889988665 66777788876 47
Q ss_pred cceeCCCCCCCCCCcccEEEeecCc
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+...|.+. +..|.++.++..+.+
T Consensus 100 ~~~~p~s~--~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 100 HSQQPKSQ--KKEPHPKKNEQKKTE 122 (326)
T ss_pred hhhCCccc--cccCCcchhhhccCc
Confidence 88888876 788999998887765
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.40 E-value=7.1 Score=21.51 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=10.6
Q ss_pred CCCCCEEeecCccccc
Q 038022 244 LPNLEALEISDINVDK 259 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~ 259 (402)
+++|+.|++++|.|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3567777777777653
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.62 E-value=9.1 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=6.6
Q ss_pred CCCEEeecCccc
Q 038022 246 NLEALEISDINV 257 (402)
Q Consensus 246 ~L~~L~l~~~~~ 257 (402)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 93
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=50.95 E-value=11 Score=19.39 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=12.3
Q ss_pred CCEEeecCcccccccccC
Q 038022 247 LEALEISDINVDKIWHYN 264 (402)
Q Consensus 247 L~~L~l~~~~~~~~~~~~ 264 (402)
|-.|++.++++...|++.
T Consensus 2 LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEGV 19 (20)
T ss_pred cEEEECCCCChHHhcCcc
Confidence 556777777777777653
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=39.49 E-value=76 Score=28.02 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=37.2
Q ss_pred CcceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038022 3 SEDNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTV 55 (402)
Q Consensus 3 ~~~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~ 55 (402)
....++++++++++.++++.+.+. ....-+ +++..-|++++.|-.-++..+
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 345789999999999999999993 222222 367788999998776655443
No 95
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=29.71 E-value=38 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred HhCCChHHHHHHHHHHccCCh---hhHHHHHHH
Q 038022 44 ACGGLPIALSTVAKALRGKSL---HEWKNSLRE 73 (402)
Q Consensus 44 ~c~GlPLal~~~g~~L~~~~~---~~W~~~l~~ 73 (402)
+.-|+|-|++-+|+.|+..+. -.|.++.+.
T Consensus 31 ~laG~p~~ARqVG~il~~l~~~s~lPWhRVvns 63 (103)
T COG3695 31 KLAGLPRAARQVGRILKHLPEGSDLPWHRVVNS 63 (103)
T ss_pred HHhCCChhHHHHHHHHhhCCCCCCCChhheecC
Confidence 456999999999999996433 349988774
No 96
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=28.03 E-value=1.1e+02 Score=20.84 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHccCCh
Q 038022 34 LKSTAIDVARACGGLPIALSTVAKALRGKSL 64 (402)
Q Consensus 34 l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~ 64 (402)
+..+--.|++.|+|++=-+.++-+.|++||.
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 3456678999999999999999999998853
No 97
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=26.82 E-value=1.9e+02 Score=21.06 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=30.5
Q ss_pred cCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhccccccCC
Q 038022 114 LMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDS 165 (402)
Q Consensus 114 ~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 165 (402)
.||..|.-.++|...+..|.+. .+..|..+-+.|.+.+++..+..
T Consensus 26 ~y~~cF~GselVdWL~~~~~~~-------sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 26 TYKGVFCGCDLVSWLIEVGLAQ-------DRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred eccccccHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHHCCCEEecCC
Confidence 3445566788888555555543 23466678899999999987654
No 98
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=25.82 E-value=4e+02 Score=25.48 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=72.4
Q ss_pred ceEeccCCCHHHHHHHHHHhhC----CCCCCc-chHHHHHHHHHHhCCChHHHHHHHHHHc-----cC---ChhhHHHHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG----DDVENR-ELKSTAIDVARACGGLPIALSTVAKALR-----GK---SLHEWKNSL 71 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~----~~~~~~-~l~~~~~~iv~~c~GlPLal~~~g~~L~-----~~---~~~~W~~~l 71 (402)
..+.+.+++.++..+++...+. .....+ .++.+++......|..+.|+..+-.+.. +. +.+..+.+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 3578999999999999999882 222222 2333344333335667888877654321 11 233455555
Q ss_pred HHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhh-c-cCC---CCCCHHHHHHHH--hh--cCccCCCCcHHH
Q 038022 72 RELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLC-S-LMG---NRILTLDLFKYS--MG--LGIFKGVNKMED 142 (402)
Q Consensus 72 ~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~-s-~fp---~~i~~~~Li~~W--~a--eg~i~~~~~~~~ 142 (402)
+... .....-.+..||.+ ++.|++. + ... ..+...++...- ++ .|.-+ .
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~-~----- 337 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP-R----- 337 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc-C-----
Confidence 5431 12334467889987 4555542 2 111 234444444321 11 12111 0
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 038022 143 ARDKLYASVHELRDSCLLL 161 (402)
Q Consensus 143 ~~~~~~~~l~~L~~~~ll~ 161 (402)
......++++.|.+.+++.
T Consensus 338 ~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 338 THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred cHHHHHHHHHHHHhcCCeE
Confidence 1234456789999999986
No 99
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=22.95 E-value=2.1e+02 Score=20.60 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=31.4
Q ss_pred cCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhccccccCCC
Q 038022 114 LMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSN 166 (402)
Q Consensus 114 ~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~ 166 (402)
.||..|.-.++|...+..|.+. .+..|..+-+.|.+.++++.+...
T Consensus 24 ~y~~cF~GselVdWL~~~~~~~-------~R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 24 TYTNCILGKELVNWLIRQGKAA-------TRVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred EcCcccChHHHHHHHHHcCCCC-------CHHHHHHHHHHHHHCCCEEecCCC
Confidence 4444455677888766665432 345666788999999999876544
No 100
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.15 E-value=1.9e+02 Score=21.60 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhccccccCC
Q 038022 115 MGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDS 165 (402)
Q Consensus 115 fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 165 (402)
||..|.-.+++...+..|-+. .++.|..+-+.|.+.++++.+..
T Consensus 34 y~~cFvGsElVdWLi~~g~~~-------tR~eAv~~gq~Ll~~gii~HV~~ 77 (93)
T cd04440 34 YKSVVPASKLVDWLLAQGDCR-------TREEAVILGVGLCNNGFMHHVLE 77 (93)
T ss_pred cccccchhHHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCEEecCC
Confidence 444455677888777777544 34566778899999999986553
No 101
>PF14516 AAA_35: AAA-like domain
Probab=21.12 E-value=2e+02 Score=27.14 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred cceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC
Q 038022 4 EDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGK 62 (402)
Q Consensus 4 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~ 62 (402)
...++|.+++.+|...|..++-.. .. ....++|...++|.|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~--~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE--FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc--CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 347899999999999998876422 11 1227899999999999999999999764
Done!