Query 038022
Match_columns 402
No_of_seqs 322 out of 2232
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.9E-26 6.5E-31 231.1 5.8 171 3-187 284-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 3.6E-20 1.2E-24 202.7 17.6 169 2-186 275-452 (1249)
3 1vt4_I APAF-1 related killer D 99.8 1.3E-18 4.3E-23 179.4 11.5 141 6-180 286-437 (1221)
4 4fcg_A Uncharacterized protein 99.7 3.1E-17 1.1E-21 153.7 13.3 128 244-391 182-309 (328)
5 1z6t_A APAF-1, apoptotic prote 99.7 9.4E-17 3.2E-21 162.5 16.3 162 6-183 277-449 (591)
6 4fcg_A Uncharacterized protein 99.7 3E-17 1E-21 153.8 11.5 172 205-396 102-290 (328)
7 2o6q_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 135.6 15.4 170 205-394 35-216 (270)
8 1ozn_A Reticulon 4 receptor; N 99.6 7.8E-15 2.7E-19 134.4 15.1 170 205-393 30-211 (285)
9 3rfs_A Internalin B, repeat mo 99.6 7.2E-15 2.5E-19 133.8 14.3 170 205-394 39-216 (272)
10 1p9a_G Platelet glycoprotein I 99.6 9.4E-15 3.2E-19 134.3 13.1 170 205-394 29-206 (290)
11 3zyi_A Leucine-rich repeat-con 99.6 2E-14 6.8E-19 140.6 14.7 148 204-370 72-229 (452)
12 3m19_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 129.3 13.5 155 206-394 34-190 (251)
13 3zyj_A Leucine-rich repeat-con 99.6 3E-14 1E-18 138.9 14.9 181 204-394 61-266 (440)
14 1ozn_A Reticulon 4 receptor; N 99.6 2.2E-14 7.5E-19 131.4 12.7 169 206-394 55-236 (285)
15 3zyj_A Leucine-rich repeat-con 99.5 2.9E-14 9.8E-19 139.0 12.9 177 207-394 88-290 (440)
16 2xwt_C Thyrotropin receptor; s 99.5 1.9E-14 6.4E-19 128.4 10.5 170 205-395 29-217 (239)
17 1ogq_A PGIP-2, polygalacturona 99.5 1E-14 3.4E-19 135.7 9.0 37 357-393 242-278 (313)
18 3zyi_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 140.4 11.7 176 206-393 98-300 (452)
19 1ogq_A PGIP-2, polygalacturona 99.5 9E-15 3.1E-19 136.0 7.8 138 238-395 118-256 (313)
20 2o6q_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 126.6 13.7 168 208-394 17-192 (270)
21 4ezg_A Putative uncharacterize 99.5 2E-14 6.7E-19 124.4 8.8 151 204-394 41-192 (197)
22 3rfs_A Internalin B, repeat mo 99.5 1.3E-13 4.6E-18 125.4 14.7 153 200-371 56-217 (272)
23 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 124.4 13.6 133 206-371 58-191 (251)
24 3o53_A Protein LRIM1, AGAP0063 99.5 3.3E-14 1.1E-18 132.4 9.5 132 244-396 119-250 (317)
25 2z66_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 128.8 12.1 168 207-394 52-234 (306)
26 2z80_A TOLL-like receptor 2, v 99.5 7.1E-14 2.4E-18 132.1 11.8 170 205-393 50-232 (353)
27 3rgz_A Protein brassinosteroid 99.5 2.8E-14 9.7E-19 148.6 9.8 180 206-395 441-692 (768)
28 1h6u_A Internalin H; cell adhe 99.5 1.1E-13 3.8E-18 128.3 12.6 162 204-393 60-227 (308)
29 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.4E-18 127.8 12.0 159 206-393 40-205 (308)
30 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.7E-18 126.5 12.0 166 207-395 10-184 (290)
31 4eco_A Uncharacterized protein 99.5 1.9E-14 6.4E-19 146.8 6.7 150 237-394 198-388 (636)
32 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 121.0 12.4 133 206-371 39-171 (229)
33 3oja_A Leucine-rich immune mol 99.5 5.4E-14 1.8E-18 138.7 9.7 111 270-395 139-249 (487)
34 2z62_A TOLL-like receptor 4, v 99.5 3.7E-14 1.3E-18 129.3 7.9 174 206-394 27-235 (276)
35 3rgz_A Protein brassinosteroid 99.5 1.1E-13 3.8E-18 144.2 12.5 85 300-394 631-715 (768)
36 2id5_A Lingo-1, leucine rich r 99.5 9.7E-14 3.3E-18 136.6 11.4 179 205-394 30-235 (477)
37 1h6t_A Internalin B; cell adhe 99.5 9.9E-14 3.4E-18 127.5 10.7 160 206-393 45-210 (291)
38 2z66_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 128.9 10.2 170 204-394 25-210 (306)
39 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6E-18 120.5 11.5 113 239-370 50-163 (220)
40 4ecn_A Leucine-rich repeat pro 99.5 5.2E-14 1.8E-18 147.1 9.2 150 237-394 440-630 (876)
41 3oja_B Anopheles plasmodium-re 99.5 1.7E-13 5.9E-18 138.6 12.4 97 207-311 75-181 (597)
42 3oja_B Anopheles plasmodium-re 99.5 1.9E-13 6.4E-18 138.4 12.2 85 297-394 250-335 (597)
43 2z62_A TOLL-like receptor 4, v 99.5 3.8E-13 1.3E-17 122.5 12.7 147 206-370 75-235 (276)
44 3o6n_A APL1; leucine-rich repe 99.5 3E-13 1E-17 129.5 12.6 97 207-311 69-175 (390)
45 2id5_A Lingo-1, leucine rich r 99.5 5.3E-13 1.8E-17 131.3 14.6 168 207-393 80-258 (477)
46 3e6j_A Variable lymphocyte rec 99.5 2.6E-13 9E-18 120.2 11.1 129 245-394 40-170 (229)
47 2xwt_C Thyrotropin receptor; s 99.5 3.3E-13 1.1E-17 120.2 11.4 166 206-393 54-236 (239)
48 1m9s_A Internalin B; cell inva 99.5 3.4E-13 1.1E-17 136.1 12.7 161 205-393 41-207 (605)
49 3o6n_A APL1; leucine-rich repe 99.4 3.9E-13 1.3E-17 128.7 12.1 85 297-394 244-329 (390)
50 4g8a_A TOLL-like receptor 4; l 99.4 1.5E-13 5.3E-18 139.5 9.6 145 204-381 49-195 (635)
51 2ell_A Acidic leucine-rich nuc 99.4 2.5E-13 8.5E-18 114.1 9.1 139 206-379 23-166 (168)
52 2z81_A CD282 antigen, TOLL-lik 99.4 2.6E-13 8.8E-18 135.8 10.8 151 206-388 25-177 (549)
53 4ay9_X Follicle-stimulating ho 99.4 1E-12 3.4E-17 124.1 13.8 171 206-395 29-238 (350)
54 3vq2_A TLR4, TOLL-like recepto 99.4 2E-13 6.8E-18 138.4 9.3 181 193-394 19-215 (606)
55 3oja_A Leucine-rich immune mol 99.4 5.3E-13 1.8E-17 131.6 11.9 170 208-395 35-226 (487)
56 2z80_A TOLL-like receptor 2, v 99.4 9E-14 3.1E-18 131.4 5.9 147 206-370 75-233 (353)
57 3v47_A TOLL-like receptor 5B a 99.4 3.1E-13 1.1E-17 132.0 9.8 178 196-394 21-223 (455)
58 3vq2_A TLR4, TOLL-like recepto 99.4 5E-13 1.7E-17 135.4 11.6 170 207-394 350-532 (606)
59 1xku_A Decorin; proteoglycan, 99.4 1E-12 3.5E-17 122.9 12.9 176 207-394 52-274 (330)
60 4glp_A Monocyte differentiatio 99.4 2.4E-13 8.3E-18 126.1 8.2 172 205-394 115-305 (310)
61 4ecn_A Leucine-rich repeat pro 99.4 2.1E-13 7E-18 142.6 8.5 169 205-395 446-656 (876)
62 4eco_A Uncharacterized protein 99.4 1.2E-13 4.2E-18 140.8 6.4 169 205-395 204-414 (636)
63 2o6s_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 114.4 11.4 131 206-369 27-158 (208)
64 1wwl_A Monocyte differentiatio 99.4 1.7E-13 5.9E-18 127.2 6.7 171 206-394 120-307 (312)
65 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.7E-17 115.4 11.5 112 240-370 52-164 (220)
66 2v9t_B SLIT homolog 2 protein 99.4 1.5E-12 5.1E-17 114.6 12.0 130 245-394 32-163 (220)
67 2o6s_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 112.4 12.8 131 244-394 27-159 (208)
68 1wwl_A Monocyte differentiatio 99.4 1.8E-13 6.1E-18 127.1 6.3 174 206-395 94-286 (312)
69 1xku_A Decorin; proteoglycan, 99.4 2.3E-12 7.8E-17 120.5 13.6 76 208-290 32-114 (330)
70 2z7x_B TOLL-like receptor 1, v 99.4 4.5E-13 1.5E-17 133.2 9.0 166 209-394 304-479 (520)
71 3t6q_A CD180 antigen; protein- 99.4 1.5E-12 5.2E-17 131.9 13.0 170 207-393 278-459 (606)
72 3j0a_A TOLL-like receptor 5; m 99.4 7.9E-13 2.7E-17 139.2 10.9 183 192-394 11-215 (844)
73 3o53_A Protein LRIM1, AGAP0063 99.4 1.3E-12 4.5E-17 121.5 11.1 165 207-395 58-226 (317)
74 4ezg_A Putative uncharacterize 99.4 2.8E-12 9.7E-17 110.7 12.4 133 201-370 60-192 (197)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.4E-12 4.8E-17 131.0 11.8 164 209-394 333-508 (562)
76 4glp_A Monocyte differentiatio 99.4 8.9E-13 3.1E-17 122.2 9.3 171 207-395 91-284 (310)
77 4fmz_A Internalin; leucine ric 99.4 2.5E-12 8.6E-17 121.0 12.2 163 205-394 64-232 (347)
78 2ft3_A Biglycan; proteoglycan, 99.4 2.3E-12 7.9E-17 120.6 11.8 131 246-394 194-331 (332)
79 2v70_A SLIT-2, SLIT homolog 2 99.4 3.7E-12 1.3E-16 112.0 12.5 130 245-394 32-164 (220)
80 1ziw_A TOLL-like receptor 3; i 99.4 8.9E-13 3E-17 135.4 9.8 174 198-390 17-202 (680)
81 4fmz_A Internalin; leucine ric 99.4 4.7E-12 1.6E-16 119.1 13.8 165 203-394 84-254 (347)
82 2ell_A Acidic leucine-rich nuc 99.4 8.2E-13 2.8E-17 111.0 7.5 133 242-395 21-159 (168)
83 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.6E-17 124.4 9.2 136 239-393 57-199 (361)
84 2z63_A TOLL-like receptor 4, v 99.4 2.6E-12 8.8E-17 129.1 12.2 171 206-394 346-529 (570)
85 2ft3_A Biglycan; proteoglycan, 99.4 5.3E-12 1.8E-16 118.1 13.0 174 206-394 53-252 (332)
86 3v47_A TOLL-like receptor 5B a 99.4 4.9E-12 1.7E-16 123.5 13.2 61 332-394 322-382 (455)
87 2z63_A TOLL-like receptor 4, v 99.4 1.3E-12 4.5E-17 131.2 9.2 175 198-393 20-210 (570)
88 2ast_B S-phase kinase-associat 99.3 9.9E-14 3.4E-18 130.0 0.9 172 206-393 92-282 (336)
89 1h6t_A Internalin B; cell adhe 99.3 8E-12 2.7E-16 114.7 13.3 151 201-378 62-218 (291)
90 4g8a_A TOLL-like receptor 4; l 99.3 1.9E-12 6.5E-17 131.4 9.6 130 245-394 52-184 (635)
91 3t6q_A CD180 antigen; protein- 99.3 6.4E-12 2.2E-16 127.2 13.3 172 207-395 350-535 (606)
92 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 107.2 6.7 129 206-367 16-148 (149)
93 3bz5_A Internalin-J, INLJ; leu 99.3 7.6E-12 2.6E-16 122.3 13.0 157 206-394 63-223 (457)
94 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.5E-17 118.1 6.7 148 203-379 37-191 (263)
95 2xot_A Amphoterin-induced prot 99.3 6.5E-12 2.2E-16 119.0 11.4 132 245-395 39-175 (361)
96 2je0_A Acidic leucine-rich nuc 99.3 8E-13 2.7E-17 108.7 4.1 128 243-391 15-148 (149)
97 4b8c_D Glucose-repressible alc 99.3 1.9E-12 6.5E-17 133.6 7.6 120 238-379 217-336 (727)
98 1a9n_A U2A', U2A'; complex (nu 99.3 1E-12 3.5E-17 111.3 4.4 62 246-318 43-104 (176)
99 3bz5_A Internalin-J, INLJ; leu 99.3 2.2E-11 7.7E-16 119.0 14.5 158 205-394 83-244 (457)
100 1xeu_A Internalin C; cellular 99.3 1.9E-11 6.6E-16 110.4 13.0 159 206-393 18-182 (263)
101 1m9s_A Internalin B; cell inva 99.3 3.3E-12 1.1E-16 128.8 8.3 159 208-394 22-186 (605)
102 1o6v_A Internalin A; bacterial 99.3 2.4E-11 8.1E-16 119.2 13.8 103 271-393 283-385 (466)
103 1o6v_A Internalin A; bacterial 99.3 2.5E-11 8.5E-16 119.0 13.7 161 206-394 198-364 (466)
104 1jl5_A Outer protein YOPM; leu 99.3 2.4E-11 8.3E-16 118.6 13.0 119 241-393 149-267 (454)
105 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 108.2 5.3 132 240-394 14-151 (176)
106 2ast_B S-phase kinase-associat 99.3 1.3E-12 4.4E-17 122.4 2.5 138 239-393 112-257 (336)
107 2z7x_B TOLL-like receptor 1, v 99.2 6.7E-12 2.3E-16 124.7 7.6 121 238-383 38-164 (520)
108 1w8a_A SLIT protein; signaling 99.2 3.2E-11 1.1E-15 103.6 10.5 106 246-370 30-137 (192)
109 3g06_A SSPH2 (leucine-rich rep 99.2 5.1E-11 1.7E-15 120.4 13.6 75 301-394 221-295 (622)
110 2z81_A CD282 antigen, TOLL-lik 99.2 7.2E-12 2.5E-16 125.3 7.3 132 245-394 26-159 (549)
111 1ziw_A TOLL-like receptor 3; i 99.2 2.8E-11 9.7E-16 124.2 11.7 164 211-394 8-182 (680)
112 3cvr_A Invasion plasmid antige 99.2 3.2E-11 1.1E-15 120.5 11.7 152 207-395 80-242 (571)
113 2o6r_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 101.1 10.5 110 245-373 28-138 (177)
114 1w8a_A SLIT protein; signaling 99.2 5.3E-11 1.8E-15 102.2 10.3 126 248-394 11-137 (192)
115 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.8E-11 9.7E-16 121.5 9.2 148 210-382 34-194 (562)
116 2wfh_A SLIT homolog 2 protein 99.2 7.7E-11 2.6E-15 101.3 10.5 106 245-370 31-137 (193)
117 4ay9_X Follicle-stimulating ho 99.2 7E-11 2.4E-15 111.4 11.1 175 211-395 13-214 (350)
118 1jl5_A Outer protein YOPM; leu 99.2 9.7E-11 3.3E-15 114.3 12.2 155 207-393 91-247 (454)
119 1dce_A Protein (RAB geranylger 99.2 3.4E-11 1.1E-15 120.7 8.0 111 246-381 442-554 (567)
120 3cvr_A Invasion plasmid antige 99.2 1.2E-10 4.2E-15 116.3 11.8 150 208-395 60-219 (571)
121 4b8c_D Glucose-repressible alc 99.2 3.1E-11 1.1E-15 124.6 7.2 115 266-396 215-329 (727)
122 2wfh_A SLIT homolog 2 protein 99.2 1.4E-10 4.9E-15 99.6 10.1 107 206-344 30-137 (193)
123 1dce_A Protein (RAB geranylger 99.1 7E-11 2.4E-15 118.4 9.2 115 230-366 445-567 (567)
124 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.8E-17 113.4 -3.5 130 238-389 41-180 (198)
125 3j0a_A TOLL-like receptor 5; m 99.1 1E-10 3.4E-15 123.1 10.6 166 212-394 9-185 (844)
126 2o6r_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 96.2 10.3 126 246-394 8-135 (177)
127 3g06_A SSPH2 (leucine-rich rep 99.1 5.6E-10 1.9E-14 112.8 13.2 165 207-394 61-252 (622)
128 2r9u_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 94.4 9.7 101 248-370 15-116 (174)
129 2ca6_A RAN GTPase-activating p 99.0 3.8E-11 1.3E-15 114.7 1.4 60 332-394 215-285 (386)
130 2ca6_A RAN GTPase-activating p 99.0 1.2E-11 4.1E-16 118.2 -2.1 172 207-395 94-315 (386)
131 3g39_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 92.7 9.0 102 247-370 11-113 (170)
132 2r9u_A Variable lymphocyte rec 99.0 9.1E-10 3.1E-14 92.9 8.1 82 245-343 33-115 (174)
133 3goz_A Leucine-rich repeat-con 99.0 1.3E-10 4.3E-15 110.1 2.2 177 207-395 80-296 (362)
134 1ds9_A Outer arm dynein; leuci 99.0 6.5E-12 2.2E-16 108.5 -6.3 135 241-394 14-151 (198)
135 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 91.5 8.1 82 245-343 30-112 (170)
136 3goz_A Leucine-rich repeat-con 98.9 2.8E-10 9.7E-15 107.7 0.7 15 245-259 80-94 (362)
137 2ifg_A High affinity nerve gro 98.8 1E-08 3.5E-13 96.2 8.3 89 237-343 24-113 (347)
138 1z7x_W Ribonuclease inhibitor; 98.7 3.3E-09 1.1E-13 103.4 0.9 35 358-393 255-294 (461)
139 2ifg_A High affinity nerve gro 98.6 7E-08 2.4E-12 90.5 8.8 102 248-370 11-114 (347)
140 1z7x_W Ribonuclease inhibitor; 98.6 1.5E-09 5E-14 106.0 -3.4 35 358-393 369-408 (461)
141 3sb4_A Hypothetical leucine ri 98.5 2E-07 7E-12 86.7 9.4 33 226-258 100-137 (329)
142 3ogk_B Coronatine-insensitive 98.5 2.5E-08 8.7E-13 100.3 1.7 56 332-391 269-326 (592)
143 2p1m_B Transport inhibitor res 98.5 1.6E-08 5.5E-13 101.8 0.1 176 207-393 105-324 (594)
144 3e4g_A ATP synthase subunit S, 98.5 1.5E-07 5.1E-12 78.5 5.5 90 245-348 61-154 (176)
145 3e4g_A ATP synthase subunit S, 98.4 9.6E-08 3.3E-12 79.7 3.7 100 266-374 53-154 (176)
146 3ogk_B Coronatine-insensitive 98.4 2.7E-08 9.4E-13 100.1 -0.2 43 266-310 285-327 (592)
147 2p1m_B Transport inhibitor res 98.4 1.8E-08 6.1E-13 101.5 -3.0 138 241-391 101-243 (594)
148 3sb4_A Hypothetical leucine ri 98.3 2.5E-06 8.5E-11 79.3 11.3 99 274-387 225-325 (329)
149 3un9_A NLR family member X1; l 98.2 4E-08 1.4E-12 93.1 -5.6 147 206-370 71-250 (372)
150 3un9_A NLR family member X1; l 97.9 3.5E-07 1.2E-11 86.6 -4.0 132 244-394 100-250 (372)
151 4fdw_A Leucine rich hypothetic 97.9 0.00012 4.2E-09 69.7 13.7 106 239-366 220-330 (401)
152 2ra8_A Uncharacterized protein 97.9 4.1E-06 1.4E-10 78.8 3.2 138 239-394 166-318 (362)
153 2ra8_A Uncharacterized protein 97.8 5.6E-06 1.9E-10 77.8 2.4 143 239-394 133-290 (362)
154 3rw6_A Nuclear RNA export fact 97.6 3.5E-05 1.2E-09 68.9 3.3 69 242-318 167-237 (267)
155 4fdw_A Leucine rich hypothetic 97.5 0.00064 2.2E-08 64.7 11.2 70 238-319 173-242 (401)
156 1io0_A Tropomodulin; LRR prote 97.1 5.9E-05 2E-09 63.7 -0.5 117 239-370 30-162 (185)
157 3rw6_A Nuclear RNA export fact 97.1 0.00032 1.1E-08 62.6 4.1 60 239-307 190-257 (267)
158 1io0_A Tropomodulin; LRR prote 96.6 0.00061 2.1E-08 57.4 1.4 92 239-343 59-161 (185)
159 4gt6_A Cell surface protein; l 96.3 0.0075 2.6E-07 57.0 7.7 131 239-394 259-389 (394)
160 2qen_A Walker-type ATPase; unk 96.2 0.056 1.9E-06 49.7 12.8 147 5-179 196-348 (350)
161 4h09_A Hypothetical leucine ri 95.4 0.073 2.5E-06 49.7 10.2 105 241-366 236-340 (379)
162 2fna_A Conserved hypothetical 95.4 0.16 5.6E-06 46.5 12.5 146 5-178 202-355 (357)
163 4fs7_A Uncharacterized protein 95.2 0.085 2.9E-06 49.6 10.0 104 266-386 288-391 (394)
164 4h09_A Hypothetical leucine ri 95.2 0.17 5.7E-06 47.2 11.9 131 240-393 212-343 (379)
165 3rfe_A Platelet glycoprotein I 94.8 0.029 1E-06 44.0 4.5 35 276-312 32-66 (130)
166 1w5s_A Origin recognition comp 94.4 0.27 9.1E-06 46.3 11.2 149 7-175 210-387 (412)
167 4fs7_A Uncharacterized protein 94.4 0.055 1.9E-06 51.0 6.2 102 240-364 292-393 (394)
168 4gt6_A Cell surface protein; l 92.5 0.31 1.1E-05 45.7 8.0 121 223-367 261-386 (394)
169 3rfe_A Platelet glycoprotein I 92.4 0.096 3.3E-06 40.9 3.5 34 246-285 32-65 (130)
170 1hqc_A RUVB; extended AAA-ATPa 89.2 0.7 2.4E-05 41.8 6.7 55 5-60 161-215 (324)
171 1njg_A DNA polymerase III subu 78.4 4.2 0.00014 34.2 6.5 54 5-59 178-231 (250)
172 2qby_B CDC6 homolog 3, cell di 56.9 44 0.0015 30.3 9.0 134 5-162 190-338 (384)
173 1fnn_A CDC6P, cell division co 54.0 65 0.0022 29.2 9.6 155 6-184 187-385 (389)
174 2v1u_A Cell division control p 52.1 81 0.0028 28.4 10.0 134 5-162 194-350 (387)
175 1pgv_A TMD-1, tropomodulin TMD 51.8 6.3 0.00022 32.9 1.9 69 241-312 37-109 (197)
176 1sxj_B Activator 1 37 kDa subu 40.2 71 0.0024 28.0 7.3 53 5-58 159-212 (323)
177 2qby_A CDC6 homolog 1, cell di 40.0 91 0.0031 28.0 8.2 134 5-162 190-347 (386)
178 2chg_A Replication factor C sm 38.7 51 0.0018 26.7 5.8 51 6-59 155-207 (226)
179 2vda_B Maltoporin; sugar trans 35.2 18 0.00062 18.6 1.3 17 46-62 9-25 (28)
180 2lz0_A Uncharacterized protein 30.8 46 0.0016 24.0 3.6 42 266-310 11-52 (100)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=1.9e-26 Score=231.12 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=130.4
Q ss_pred CcceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHH-hcCCCCCC
Q 038022 3 SEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRE-LRTPSMVN 81 (402)
Q Consensus 3 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~-l~~~~~~~ 81 (402)
+.++|+|++|+.+|||+||.++|+....++++++++++|+++|+|+|||++++|+.|+.+ .++|...+.. +....
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~~~~~l~~~l~~~~--- 359 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRG--- 359 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHHC---
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hHHHHHHhHHHhhccc---
Confidence 346799999999999999999995444457888999999999999999999999999876 3444333332 21111
Q ss_pred CCCchhHHHHHHhhcccCCCcchhhhHHh-----------hhccCC--CCCCHHHHHHHHhhc--CccCCCCcHHHHHHH
Q 038022 82 FEGVSAETYSSIELSFNQLKGEQLKKIFL-----------LCSLMG--NRILTLDLFKYSMGL--GIFKGVNKMEDARDK 146 (402)
Q Consensus 82 ~~~~~~~i~~~l~lsy~~L~~~~lk~cfl-----------~~s~fp--~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~ 146 (402)
..++.+++.+||++||.+ +|.||+ |||+|| +.|+ +++|+|+ ||+.........++.
T Consensus 360 ----~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 360 ----LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp ----SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred ----HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 234778999999999999 899999 999999 7777 8999999 999754312234455
Q ss_pred HHHHHHHHHHhccccccC--CCCeEEccHHHHHHHHHHHhhcc
Q 038022 147 LYASVHELRDSCLLLEGD--SNEEFSMHDVVRDVAISVACRHQ 187 (402)
Q Consensus 147 ~~~~l~~L~~~~ll~~~~--~~~~~~mhdlv~~~a~~i~~~e~ 187 (402)
+. ++++|+++||++... ...+|+|||++|++|+.++++++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 55 899999999998654 34579999999999999987665
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=3.6e-20 Score=202.72 Aligned_cols=169 Identities=17% Similarity=0.270 Sum_probs=139.2
Q ss_pred CCcceEeccC-CCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCC
Q 038022 2 GSEDNFLINN-LKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMV 80 (402)
Q Consensus 2 ~~~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~ 80 (402)
+..+.|++.+ |+.+|||+||...++.. .+++.+++++|+++|+|+||||+++|++|+.+. .+|+..++++......
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence 4567899996 99999999999999432 234457799999999999999999999999876 5799999998766533
Q ss_pred CC----CCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHH
Q 038022 81 NF----EGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHEL 154 (402)
Q Consensus 81 ~~----~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L 154 (402)
.+ ......+..++.+||+.||++ .|.||+|||+|| +.|+++.++++|.++ ++.+.+++++|
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L 418 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEF 418 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHH
Confidence 32 112356999999999999999 699999999999 899999999999665 24556789999
Q ss_pred HHhccccccCCCC--eEEccHHHHHHHHHHHhhc
Q 038022 155 RDSCLLLEGDSNE--EFSMHDVVRDVAISVACRH 186 (402)
Q Consensus 155 ~~~~ll~~~~~~~--~~~mhdlv~~~a~~i~~~e 186 (402)
++++|++....+. +|+|||++|++++..+.++
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999998554333 5999999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.76 E-value=1.3e-18 Score=179.38 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=116.4
Q ss_pred eEecc------CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC--ChhhHHHHHHHhcCC
Q 038022 6 NFLIN------NLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGK--SLHEWKNSLRELRTP 77 (402)
Q Consensus 6 ~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~--~~~~W~~~l~~l~~~ 77 (402)
.|+|+ +|+.+|||+||++..+.. ..++..+| |+|+||||+++|+.|+.+ +..+|+..
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------- 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------- 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence 56777 999999999999997433 12334444 999999999999999987 45668753
Q ss_pred CCCCCCCchhHHHHHHhhcccCCCcchh-hhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHH
Q 038022 78 SMVNFEGVSAETYSSIELSFNQLKGEQL-KKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHEL 154 (402)
Q Consensus 78 ~~~~~~~~~~~i~~~l~lsy~~L~~~~l-k~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L 154 (402)
. ...+..++.+||+.||++ . |+||+|||+|| +.|+.+.++.+|+++|. +.+..++++|
T Consensus 351 ~-------~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eL 411 (1221)
T 1vt4_I 351 N-------CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKL 411 (1221)
T ss_dssp S-------CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHH
T ss_pred C-------hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHH
Confidence 0 456999999999999999 7 99999999999 88999999999999871 2356689999
Q ss_pred HHhccccccCCCCeEEccHHHHHHHH
Q 038022 155 RDSCLLLEGDSNEEFSMHDVVRDVAI 180 (402)
Q Consensus 155 ~~~~ll~~~~~~~~~~mhdlv~~~a~ 180 (402)
+++||++......+|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999987555678999999998653
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=3.1e-17 Score=153.73 Aligned_cols=128 Identities=27% Similarity=0.352 Sum_probs=78.7
Q ss_pred CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA 323 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 323 (402)
+++|++|++++|.++. +|.. ++.+++|++|++++ +.+++ +|.. ++.+++|++|++++|...+.+|...+.
T Consensus 182 l~~L~~L~L~~n~l~~------lp~~-l~~l~~L~~L~L~~-N~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS------LPAS-IANLQNLKSLKIRN-SPLSA-LGPA-IHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp STTCCEEEEEEECCCC------CCGG-GGGCTTCCEEEEES-SCCCC-CCGG-GGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred CCCCCEEECcCCCcCc------chHh-hcCCCCCCEEEccC-CCCCc-Cchh-hccCCCCCEEECcCCcchhhhHHHhcC
Confidence 5555555555555553 5553 66666666666666 35655 3444 456666666666666555555554444
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIP 391 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~ 391 (402)
+++|+.|++++|+.+..+|... .++++|++|++++|+.++.+|..++++..+..++++
T Consensus 252 --------l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 252 --------RAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp --------CCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred --------CCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 6667777777666666666544 566677777777777777777777766666665554
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=162.49 Aligned_cols=162 Identities=16% Similarity=0.287 Sum_probs=129.2
Q ss_pred eEec---cCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCC
Q 038022 6 NFLI---NNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNF 82 (402)
Q Consensus 6 ~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~ 82 (402)
.|++ ++|+.+||++||.+.++.. .....+.+.+|+++|+|+|||++.+|+.++.+. .+|+.+++.+.......+
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCS
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHh
Confidence 4555 5899999999999999542 223346789999999999999999999998763 479999998876543222
Q ss_pred ----CCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHH
Q 038022 83 ----EGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRD 156 (402)
Q Consensus 83 ----~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~ 156 (402)
......+..++..||+.||++ .|.||+++|+|| +.|+.+.+..+|.++ .+.+..++++|++
T Consensus 354 ~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVN 420 (591)
T ss_dssp SCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHh
Confidence 122457999999999999999 699999999998 789999999999653 1234567999999
Q ss_pred hccccccCC--CCeEEccHHHHHHHHHHH
Q 038022 157 SCLLLEGDS--NEEFSMHDVVRDVAISVA 183 (402)
Q Consensus 157 ~~ll~~~~~--~~~~~mhdlv~~~a~~i~ 183 (402)
++|++.... ...|+||+++|++++...
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999974332 237999999999998773
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=3e-17 Score=153.81 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=147.4
Q ss_pred hhhhccccccccCCCccc---cccCCce-EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCcccC----
Q 038022 205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFP---- 272 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~---- 272 (402)
....++++++.+|.+..+ +.++++| +||+++ .+|..+.++++|++|++++|.+.+ .+|.. ++
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~-----~~p~~-~~~~~~ 175 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT-----ELPEP-LASTDA 175 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCC-----CCCSC-SEEEC-
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcc-----ccChh-Hhhccc
Confidence 357899999999988866 4556666 888877 467889999999999999988776 68875 54
Q ss_pred -----CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccc
Q 038022 273 -----HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLR 347 (402)
Q Consensus 273 -----~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~ 347 (402)
.+++|++|++++| .++. +|.. ++++++|++|++++|. +..+|...+. +++|++|++++|....
T Consensus 176 ~~~~~~l~~L~~L~L~~n-~l~~-lp~~-l~~l~~L~~L~L~~N~-l~~l~~~l~~--------l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWT-GIRS-LPAS-IANLQNLKSLKIRNSP-LSALGPAIHH--------LPKLEELDLRGCTALR 243 (328)
T ss_dssp CCCEEESTTCCEEEEEEE-CCCC-CCGG-GGGCTTCCEEEEESSC-CCCCCGGGGG--------CTTCCEEECTTCTTCC
T ss_pred hhhhccCCCCCEEECcCC-CcCc-chHh-hcCCCCCCEEEccCCC-CCcCchhhcc--------CCCCCEEECcCCcchh
Confidence 4999999999995 8986 6877 7999999999999986 8888887665 9999999999998888
Q ss_pred eeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022 348 CLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV 396 (402)
Q Consensus 348 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~ 396 (402)
.+|... +.+++|++|++++|+.++.+|..++.+..|+.++++++.-.
T Consensus 244 ~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 244 NYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp BCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred hhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 888765 78999999999999999999999999999999999987643
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.7e-15 Score=135.56 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=135.9
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
.+..++++.+.+|++..+ +.++++| .|+++++. +..+..+++|++|++++|.+.+ +|...+..+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l 108 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA------LPIGVFDQL 108 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC------CCTTTTTTC
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc------CCHhHcccc
Confidence 456789999999988876 4456666 78887732 2446789999999999999986 777668899
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
++|++|++++ +.++.+.|. .++.+++|++|++++|. ++.+|.. ... +++|++|+++++ .++.++...
T Consensus 109 ~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~ 176 (270)
T 2o6q_A 109 VNLAELRLDR-NQLKSLPPR-VFDSLTKLTYLSLGYNE-LQSLPKGVFDK--------LTSLKELRLYNN-QLKRVPEGA 176 (270)
T ss_dssp SSCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT
T ss_pred cCCCEEECCC-CccCeeCHH-HhCcCcCCCEEECCCCc-CCccCHhHccC--------CcccceeEecCC-cCcEeChhH
Confidence 9999999999 589886444 47899999999999885 8888764 233 899999999986 788887753
Q ss_pred CCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 354 HTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
..++++|++|++++|. ++.+|.. +..+..|+.++++++.
T Consensus 177 -~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 177 -FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 2678999999999975 7888875 7778889999988774
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=7.8e-15 Score=134.43 Aligned_cols=170 Identities=19% Similarity=0.130 Sum_probs=92.7
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcc-cccccccCCCCCcccCC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDIN-VDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~lp~~~i~~ 273 (402)
.+..++++.+.+|++..+ +..+++| .|+++++ .+..+..+++|++|++++|. +.. ++...+..
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~------~~~~~~~~ 103 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS------VDPATFHG 103 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC------CCTTTTTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc------cCHHHhcC
Confidence 356777777777777665 3445555 6666552 24556667777777777775 553 43334666
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCC
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPG 352 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~ 352 (402)
+++|++|++++ +.++++.|.. ++++++|++|++++|. ++.+|.. .+. +++|++|+++++ +++.++..
T Consensus 104 l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~ 171 (285)
T 1ozn_A 104 LGRLHTLHLDR-CGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTFRD--------LGNLTHLFLHGN-RISSVPER 171 (285)
T ss_dssp CTTCCEEECTT-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCEECTT
T ss_pred CcCCCEEECCC-CcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHhcc--------CCCccEEECCCC-cccccCHH
Confidence 66666666666 3566543333 5566666666666654 5555432 222 555555555553 45555443
Q ss_pred CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 353 MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
. ...+++|++|++++|.-....|..++.+..|+.++++++
T Consensus 172 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 172 A-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp T-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred H-hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 2 134455555555554422222444555555555554444
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=7.2e-15 Score=133.81 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=116.2
Q ss_pred hhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
....++.+.+.++.+..+ +..+++| .|+++++. ++.+..+++|++|++++|.+++ +|...++.+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS------LPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc------cChhHhcCCcCCC
Confidence 345566666666655554 3445555 56666522 2457788888888888888875 6665577888888
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE 357 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~ 357 (402)
+|++++ ++++++ |...++++++|++|++++|. ++.+|... .. +++|+.|+++++ +++.++... ...
T Consensus 113 ~L~L~~-n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~-~~~ 179 (272)
T 3rfs_A 113 ELVLVE-NQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDK--------LTNLTELDLSYN-QLQSLPEGV-FDK 179 (272)
T ss_dssp EEECTT-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCCCCTTT-TTT
T ss_pred EEECCC-CcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhcc--------CccCCEEECCCC-CcCccCHHH-hcC
Confidence 888888 477775 43336778888888888774 77776542 22 788888888876 577776643 256
Q ss_pred CCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 358 WPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
+++|++|++++|. +..+|.. ++.+..|+.++++++.
T Consensus 180 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 180 LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 7888888888866 5555554 5777888888877764
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=9.4e-15 Score=134.33 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=138.0
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
.+..++.+.+.+|.+..+ +..+++| .|+++++.. .....+++|++|++++|.+.. +|.. +..+++
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~-~~~l~~ 101 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS------LPLL-GQTLPA 101 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS------CCCC-TTTCTT
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc------Cchh-hccCCC
Confidence 357889999999998876 4556666 888887432 223788999999999999985 8884 899999
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS 356 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~ 356 (402)
|++|++++ ++++.+.|.. ++++++|++|++++|. ++.+|.... ..+++|+.|+++++ +++.++.+.. .
T Consensus 102 L~~L~l~~-N~l~~l~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-------~~l~~L~~L~L~~N-~l~~l~~~~~-~ 169 (290)
T 1p9a_G 102 LTVLDVSF-NRLTSLPLGA-LRGLGELQELYLKGNE-LKTLPPGLL-------TPTPKLEKLSLANN-NLTELPAGLL-N 169 (290)
T ss_dssp CCEEECCS-SCCCCCCSST-TTTCTTCCEEECTTSC-CCCCCTTTT-------TTCTTCCEEECTTS-CCSCCCTTTT-T
T ss_pred CCEEECCC-CcCcccCHHH-HcCCCCCCEEECCCCC-CCccChhhc-------ccccCCCEEECCCC-cCCccCHHHh-c
Confidence 99999999 6899864444 7899999999999985 888876531 22899999999986 7999987652 5
Q ss_pred CCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.+++|+.|++++|. ++.+|..+.....|+.++++++.
T Consensus 170 ~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 170 GLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 78999999999865 88999999998889988888764
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=2e-14 Score=140.60 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=96.7
Q ss_pred hhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022 204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~ 273 (402)
..+..++.+.+.+|++..+ +.++++| .|+++++ .+..|..+++|++|+|++|.++. +|...+..
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~ 145 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV------IPSGAFEY 145 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB------CCTTTSSS
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc------cChhhhcc
Confidence 3457888999998888876 4556666 7777763 34667788888888888888886 77666778
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCC
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
+++|++|+|++ +.++.+ |...+.++++|++|++++|..++.++...- ..+++|+.|+++++ +++.+|.
T Consensus 146 l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n-~l~~~~~-- 213 (452)
T 3zyi_A 146 LSKLRELWLRN-NPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAF-------EGLFNLKYLNLGMC-NIKDMPN-- 213 (452)
T ss_dssp CTTCCEEECCS-CCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCTTCCEEECTTS-CCSSCCC--
T ss_pred cCCCCEEECCC-CCccee-CHhHHhcCCcccEEeCCCCCCccccChhhc-------cCCCCCCEEECCCC-ccccccc--
Confidence 88888888888 477775 443367788888888877766777765311 11555555555543 3444432
Q ss_pred CCCCCCcccEEEeecCc
Q 038022 354 HTSEWPALEILLVCGCD 370 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~ 370 (402)
...+++|++|++++|.
T Consensus 214 -~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNH 229 (452)
T ss_dssp -CTTCTTCCEEECTTSC
T ss_pred -ccccccccEEECcCCc
Confidence 1334444444444433
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2e-14 Score=129.26 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=101.0
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|.+..+ .+..+.++++|++|++++|.+++ ++...+..+++|++|++++
T Consensus 34 ~~~l~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~- 92 (251)
T 3m19_A 34 PADTEKLDLQSTGLATL--------------SDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLAN- 92 (251)
T ss_dssp CTTCCEEECTTSCCCCC--------------CTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTT-
T ss_pred CCCCCEEEccCCCcCcc--------------CHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCC-
Confidence 34566666666665543 23456777777777777777775 5554567777777777777
Q ss_pred CCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
+.++.+ |...++.+++|++|++++|. ++.+|... .. +++|++|+++++ +++.++... ...+++|++|
T Consensus 93 n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L 160 (251)
T 3m19_A 93 NQLASL-PLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR--------LTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTL 160 (251)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEE
T ss_pred Cccccc-ChhHhcccCCCCEEEcCCCc-CCCcChhHhcc--------CCcccEEECcCC-cCCccCHHH-cCcCcCCCEE
Confidence 467764 43335677777777777764 66666542 22 677777777765 677776642 2567777777
Q ss_pred EeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 365 LVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 365 ~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
++++|. ++.+|. .+..+..|+.++++++.
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 777755 555555 56666777777776664
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=138.85 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=107.1
Q ss_pred hhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022 204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~ 273 (402)
..+..++.+.+.+|++..+ +.++++| .|+++++ .+..|..+++|++|+|++|.++. +|...|..
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~ 134 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT------IPNGAFVY 134 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS------CCTTTSCS
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe------eCHhHhhc
Confidence 3456788888888888776 4556666 7777763 24567788888888888888875 66655777
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccc--------------ccccccccccccee
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRAD--------------QVIPYFVFPQLTTL 338 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~--------------~~~~~~~l~~L~~L 338 (402)
+++|++|+|++ +.++.+ |...+.++++|++|++++|..+..++.. .... ..-.+..+++|+.|
T Consensus 135 l~~L~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRN-NPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCS-CCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred cccCceeeCCC-Cccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence 77777777777 467764 3333567777777777766666666542 1110 00001114455555
Q ss_pred ecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 339 ILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 339 ~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+|+++ +++.+++.. ..++++|+.|++++|.--...|..+..+..|+.+++++++
T Consensus 213 ~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 213 DLSGN-HLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ECCCC-ccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 55543 444443322 2455566666665544222223345556666666666553
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=2.2e-14 Score=131.41 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=137.7
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
...++.+.+..|.+..+ +..+++| .|+++++. +..+..+++|++|++++|.+.+ ++...+..+
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l 128 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGL 128 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTC
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------ECHhHhhCC
Confidence 46789999999988876 4556677 88888753 5678899999999999999986 655568999
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
++|++|++++ +.++.+ |...++.+++|++|++++|. ++.+|.. ... +++|++|+++++ .+..+.+..
T Consensus 129 ~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~ 196 (285)
T 1ozn_A 129 AALQYLYLQD-NALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG--------LHSLDRLLLHQN-RVAHVHPHA 196 (285)
T ss_dssp TTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTT--------CTTCCEEECCSS-CCCEECTTT
T ss_pred cCCCEEECCC-Cccccc-CHhHhccCCCccEEECCCCc-ccccCHHHhcC--------ccccCEEECCCC-cccccCHhH
Confidence 9999999999 589985 54447899999999999985 8888764 333 899999999987 677775432
Q ss_pred CCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 354 HTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
..++++|+.|++++|. ++.+|. .++.+..|+.++++++.
T Consensus 197 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 197 -FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -ccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 2789999999999976 677775 48889999999998875
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=138.97 Aligned_cols=177 Identities=18% Similarity=0.257 Sum_probs=106.9
Q ss_pred hhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 207 RKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
..++.+.+..|.+..+ +.++++| .|+++++. +..+..+++|++|++++|.+.. +|...+..+++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------~~~~~~~~l~~ 161 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES------IPSYAFNRIPS 161 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE------ECTTTTTTCTT
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc------cCHHHhhhCcc
Confidence 4566666666666654 3344555 56665521 2345666667777777666664 44434555555
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc---------------cccccccccccceeecc
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD---------------QVIPYFVFPQLTTLILQ 341 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~---------------~~~~~~~l~~L~~L~L~ 341 (402)
|++|++++|+.+..+ |...+.++++|++|++++|. ++.+|...... ....+..+++|+.|+++
T Consensus 162 L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 162 LRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp CCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCEeCCCCCCCccee-CcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 555555554444443 22224445555555554442 33333211000 01123348999999999
Q ss_pred cccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 342 DLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 342 ~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
++ +++.++... ..++++|+.|++++|. ++.+|.. +..+..|+.++++++.
T Consensus 240 ~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 240 QS-QIQVIERNA-FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TC-CCCEECTTS-STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CC-ceeEEChhh-hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 86 788887754 3689999999999975 7788875 5778899999998774
No 16
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.9e-14 Score=128.39 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=132.9
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecC-cccccccccCCCCCcccC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISD-INVDKIWHYNEIPAAVFP 272 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~-~~~~~~~~~~~lp~~~i~ 272 (402)
.+..++.+.+.+|+++.+ +.++++| .|+++++- +..+..+++|++|++++ |.+++ +|...|.
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~------i~~~~f~ 102 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY------IDPDALK 102 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE------ECTTSEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE------cCHHHhC
Confidence 556899999999999887 4456666 77777642 24678889999999998 88886 7765688
Q ss_pred CCCCccEEEEeccCCCccccchHHHhcCCccC---eeeeeccccccccccc-cccccccccccccccc-eeecccccccc
Q 038022 273 HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQ---HLDIRFCEDLQEIISE-NRADQVIPYFVFPQLT-TLILQDLPKLR 347 (402)
Q Consensus 273 ~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~---~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~-~L~L~~~~~L~ 347 (402)
.+++|++|++++ +.+++ +|. ++.+++|+ +|++++|..++.+|.. ... +++|+ +|+++++ .++
T Consensus 103 ~l~~L~~L~l~~-n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------l~~L~~~L~l~~n-~l~ 169 (239)
T 2xwt_C 103 ELPLLKFLGIFN-TGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------LCNETLTLKLYNN-GFT 169 (239)
T ss_dssp CCTTCCEEEEEE-ECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------TBSSEEEEECCSC-CCC
T ss_pred CCCCCCEEeCCC-CCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccc--------hhcceeEEEcCCC-CCc
Confidence 899999999999 47888 465 56788887 9999988558888764 233 89999 9999985 688
Q ss_pred eeCCCCCCCCCCcccEEEeecCcccccccc-ccCCC-CcCCcCCCCCCCC
Q 038022 348 CLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQN-NENDQLGIPAQQP 395 (402)
Q Consensus 348 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~-~~l~~~~~~~~~~ 395 (402)
.+|... ...++|+.|++++|+.++.+|. .++.+ ..|+.+++++++-
T Consensus 170 ~i~~~~--~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 170 SVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp EECTTT--TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred ccCHhh--cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 888765 3348999999999877888875 46777 8899998887653
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.54 E-value=1e-14 Score=135.68 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=16.8
Q ss_pred CCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
.+++|++|++++|...+.+|..++.+..|+.++++++
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 3444444444444433344444444444444444443
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=2.1e-14 Score=140.39 Aligned_cols=176 Identities=17% Similarity=0.212 Sum_probs=106.9
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
...++.+.+.+|.+..+ +.++++| .|+++++. +..+..+++|++|++++|.+.. +|...+..++
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~ 171 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES------IPSYAFNRVP 171 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE------ECTTTTTTCT
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce------eCHhHHhcCC
Confidence 46788888888888776 4455666 77777632 3457788888888888888876 6665577778
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------------cccccccccccceee
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------------QVIPYFVFPQLTTLI 339 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------------~~~~~~~l~~L~~L~ 339 (402)
+|++|++++|+.+..+ |...+.++++|++|++++|. +..+|.. ... ....+..+++|+.|+
T Consensus 172 ~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCN-IKDMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSC-CSSCCCC-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred cccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCc-ccccccc-cccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 8888888777777764 44336677777777777764 6666532 110 000112245555555
Q ss_pred cccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCC
Q 038022 340 LQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQ 393 (402)
Q Consensus 340 L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~ 393 (402)
++++ ++..++... ...+++|+.|++++|. ++.+|.. +..+..|+.++++++
T Consensus 249 L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 249 VMNS-QVSLIERNA-FDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred eCCC-cCceECHHH-hcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 5543 344444332 2455666666666653 5555543 345555666666554
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=9e-15 Score=136.00 Aligned_cols=138 Identities=11% Similarity=0.048 Sum_probs=71.2
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCC-ccCeeeeeccccccc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLK-QLQHLDIRFCEDLQE 316 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~-~L~~L~l~~~~~l~~ 316 (402)
|..+.++++|++|++++|.+.+ .+|.. ++.+++|++|++++ +.+++..|.. +++++ +|++|++++|..-..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~-----~~p~~-~~~l~~L~~L~L~~-N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSG-----TLPPS-ISSLPNLVGITFDG-NRISGAIPDS-YGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEES-----CCCGG-GGGCTTCCEEECCS-SCCEEECCGG-GGCCCTTCCEEECCSSEEEEE
T ss_pred CHHHhCCCCCCEEeCCCCccCC-----cCChH-HhcCCCCCeEECcC-CcccCcCCHH-HhhhhhcCcEEECcCCeeecc
Confidence 3344444445555555444443 24442 44455555555554 2444334443 34444 555555554432223
Q ss_pred cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
+|..... ++ |+.|+++++ .+...++.. ...+++|+.|++++|. +...+..++.+..|+.+++++++-
T Consensus 190 ~~~~~~~--------l~-L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 190 IPPTFAN--------LN-LAFVDLSRN-MLEGDASVL-FGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CCGGGGG--------CC-CSEEECCSS-EEEECCGGG-CCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCC
T ss_pred CChHHhC--------Cc-ccEEECcCC-cccCcCCHH-HhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcc
Confidence 3333332 33 666666664 344333221 2567778888887766 444444477777787777777654
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=8.3e-14 Score=126.58 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=133.3
Q ss_pred hccccccccCCCccccccCC-ce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022 208 KCNAISLRNNKESTTMYSSS-EI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~~~~~~-~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L 280 (402)
..+.+.+..+++..+....+ .+ .|+++++ .+..+.++++|++|++++|.++. +|...+..+++|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT------LPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC------CCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe------eChhhhcCCCCCCEE
Confidence 45678888888877643332 34 6777763 23578999999999999999986 888767999999999
Q ss_pred EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022 281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA 360 (402)
Q Consensus 281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~ 360 (402)
++++ +.++.+ |...++++++|++|++++|. ++.+|... +..+++|++|+++++ .++.++... ...+++
T Consensus 91 ~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~ 158 (270)
T 2o6q_A 91 WVTD-NKLQAL-PIGVFDQLVNLAELRLDRNQ-LKSLPPRV-------FDSLTKLTYLSLGYN-ELQSLPKGV-FDKLTS 158 (270)
T ss_dssp ECCS-SCCCCC-CTTTTTTCSSCCEEECCSSC-CCCCCTTT-------TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTT
T ss_pred ECCC-CcCCcC-CHhHcccccCCCEEECCCCc-cCeeCHHH-------hCcCcCCCEEECCCC-cCCccCHhH-ccCCcc
Confidence 9999 589985 55447899999999999986 77777542 122899999999986 788888764 368999
Q ss_pred ccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 361 LEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 361 L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
|++|++++|. ++.+|.. +..+..|+.+++++++
T Consensus 159 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 159 LKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence 9999999976 7777764 7888999999998774
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=2e-14 Score=124.35 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=101.3
Q ss_pred hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
.....++.+++.+|.+..+ + .+..+++|++|++++|.+.. +|. +..+++|++|+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l---------------~-~l~~l~~L~~L~l~~n~~~~------~~~--l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL---------------T-GIEYAHNIKDLTINNIHATN------YNP--ISGLSNLERLRIM 96 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC---------------T-TGGGCTTCSEEEEESCCCSC------CGG--GTTCTTCCEEEEE
T ss_pred hhcCCccEEeccCCCccCh---------------H-HHhcCCCCCEEEccCCCCCc------chh--hhcCCCCCEEEeE
Confidence 4567788888888887764 2 46677777777777776653 432 6777777777777
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccc-cccccccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE 362 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~ 362 (402)
+ +.+++..|.. ++++++|++|++++|. +.. .|..... +++|++|++++|..++.++. ...+++|+
T Consensus 97 ~-n~l~~~~~~~-l~~l~~L~~L~Ls~n~-i~~~~~~~l~~--------l~~L~~L~L~~n~~i~~~~~---l~~l~~L~ 162 (197)
T 4ezg_A 97 G-KDVTSDKIPN-LSGLTSLTLLDISHSA-HDDSILTKINT--------LPKVNSIDLSYNGAITDIMP---LKTLPELK 162 (197)
T ss_dssp C-TTCBGGGSCC-CTTCTTCCEEECCSSB-CBGGGHHHHTT--------CSSCCEEECCSCTBCCCCGG---GGGCSSCC
T ss_pred C-CccCcccChh-hcCCCCCCEEEecCCc-cCcHhHHHHhh--------CCCCCEEEccCCCCccccHh---hcCCCCCC
Confidence 7 4676644544 5677777777777775 443 4444443 77777777777654666652 25677777
Q ss_pred EEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 363 ILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 363 ~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.|++++|. ++.+| .+..+..|+.+++++++
T Consensus 163 ~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 163 SLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 77777765 66666 56667777777776654
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.3e-13 Score=125.37 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=122.2
Q ss_pred CCchhhhhhccccccccCCCccc--cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022 200 WPDEDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVF 271 (402)
Q Consensus 200 ~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i 271 (402)
.+.......++.+++.+|.+..+ +..+++| .|+++++ .+..+..+++|++|++++|.+++ +|...+
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~ 129 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS------LPDGVF 129 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTT
T ss_pred ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc------cCHHHh
Confidence 33344567899999999988876 5566777 8888873 23457899999999999999986 777668
Q ss_pred CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeC
Q 038022 272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLY 350 (402)
Q Consensus 272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~ 350 (402)
+.+++|++|++++| .++++ |...++.+++|++|++++|. ++.+|... +. +++|++|+++++ .++.++
T Consensus 130 ~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~ 197 (272)
T 3rfs_A 130 DKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDK--------LTQLKDLRLYQN-QLKSVP 197 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCC
T ss_pred ccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCCC-cCccCHHHhcC--------CccCCEEECCCC-cCCccC
Confidence 99999999999995 89985 54446899999999999996 77777643 33 899999999986 688887
Q ss_pred CCCCCCCCCcccEEEeecCcc
Q 038022 351 PGMHTSEWPALEILLVCGCDK 371 (402)
Q Consensus 351 ~~~~~~~l~~L~~L~l~~c~~ 371 (402)
... ...+++|+.|++++|+.
T Consensus 198 ~~~-~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 198 DGV-FDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTT-TTTCTTCCEEECCSSCB
T ss_pred HHH-HhCCcCCCEEEccCCCc
Confidence 753 36789999999988653
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.1e-13 Score=124.36 Aligned_cols=133 Identities=23% Similarity=0.284 Sum_probs=107.1
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
...++.+.+.+|.++.+ .+..+..+++|++|++++|.+++ +|...+..+++|++|+|++
T Consensus 58 l~~L~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~- 116 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTL--------------SAGVFDDLTELGTLGLANNQLAS------LPLGVFDHLTQLDKLYLGG- 116 (251)
T ss_dssp CTTCCEEECTTSCCCCC--------------CTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred cccCCEEECCCCcCCcc--------------CHhHhccCCcCCEEECCCCcccc------cChhHhcccCCCCEEEcCC-
Confidence 35666666666666543 34568899999999999999986 7776789999999999999
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
+.++++ |...++.+++|++|++++|. ++.+|.. .+. +++|++|+++++ +++.++... ...+++|+.|
T Consensus 117 N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L 184 (251)
T 3m19_A 117 NQLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDK--------LTNLQTLSLSTN-QLQSVPHGA-FDRLGKLQTI 184 (251)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred CcCCCc-ChhHhccCCcccEEECcCCc-CCccCHHHcCc--------CcCCCEEECCCC-cCCccCHHH-HhCCCCCCEE
Confidence 589985 55546899999999999985 8888863 333 899999999986 788888753 3688999999
Q ss_pred EeecCcc
Q 038022 365 LVCGCDK 371 (402)
Q Consensus 365 ~l~~c~~ 371 (402)
++++++-
T Consensus 185 ~l~~N~~ 191 (251)
T 3m19_A 185 TLFGNQF 191 (251)
T ss_dssp ECCSCCB
T ss_pred EeeCCce
Confidence 9999773
No 24
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=3.3e-14 Score=132.37 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=95.7
Q ss_pred CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA 323 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 323 (402)
+++|++|++++|.+++ ++...++.+++|++|++++ +.+++..|..+.+.+++|++|++++|. ++.+|....
T Consensus 119 ~~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~- 189 (317)
T 3o53_A 119 GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV- 189 (317)
T ss_dssp CSSCEEEECCSSCCCS------GGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC-
T ss_pred cCCCCEEECCCCCCCC------ccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccc-
Confidence 3445555555555543 4443467778888888888 477775555544577888888888775 777754322
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV 396 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~ 396 (402)
+++|++|+++++ +++.++... ..+++|+.|++++|. ++.+|..++.+..|+.++++++.-.
T Consensus 190 --------l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 --------FAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp --------CTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred --------cccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc
Confidence 888999999986 788887764 678899999998875 7889998888889999988887643
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=8.4e-14 Score=128.85 Aligned_cols=168 Identities=20% Similarity=0.227 Sum_probs=91.0
Q ss_pred hhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCC-cccCCC
Q 038022 207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPA-AVFPHF 274 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l 274 (402)
..++.+.+.+|.+... ...+++| .||++++ ++..+..+++|++|++++|.+.+ +|. ..+..+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l 125 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSL 125 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES------STTTTTTTTC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc------cccchhhhhc
Confidence 4555555555555432 2233444 5555552 34456666677777777766664 443 236667
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG 352 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~ 352 (402)
++|++|++++ +.+.+..|.. ++++++|++|++++|. +.. +|..... +++|++|+++++ .++.+++.
T Consensus 126 ~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~ 193 (306)
T 2z66_A 126 RNLIYLDISH-THTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTE--------LRNLTFLDLSQC-QLEQLSPT 193 (306)
T ss_dssp TTCCEEECTT-SCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTT
T ss_pred cCCCEEECCC-CcCCccchhh-cccCcCCCEEECCCCc-cccccchhHHhh--------CcCCCEEECCCC-CcCCcCHH
Confidence 7777777776 3566644443 5667777777777664 433 4444333 566666666654 45555332
Q ss_pred CCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 353 MHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
. ...+++|++|++++|. ++.+|. .++.+..|+.+++++++
T Consensus 194 ~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 194 A-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp T-TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred H-hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 2 1455566666665544 333333 44555555555555443
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=7.1e-14 Score=132.09 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=82.6
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
.+..++.+.+.+|+++.+ +.++++| .|+++++ .+..+.++++|++|++++|.+++ +|...++.+
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l 123 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------LSSSWFKPL 123 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------CCHHHHTTC
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------CCHhHhCCC
Confidence 345788888888887765 2333444 4444441 12334555555555555555553 444334555
Q ss_pred CCccEEEEeccCCCccccch-HHHhcCCccCeeeeecccccccccc-ccccccccccccccccceeecccccccceeCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG 352 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~ 352 (402)
++|++|++++ +.++.+ |. ..++++++|++|++++|..++.++. .... +++|++|+++++ .+..+.+.
T Consensus 124 ~~L~~L~L~~-n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~ 192 (353)
T 2z80_A 124 SSLTFLNLLG-NPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG--------LTFLEELEIDAS-DLQSYEPK 192 (353)
T ss_dssp TTCSEEECTT-CCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--------CCEEEEEEEEET-TCCEECTT
T ss_pred ccCCEEECCC-CCCccc-CchhhhccCCCCcEEECCCCccccccCHHHccC--------CCCCCEEECCCC-CcCccCHH
Confidence 5555555555 345542 32 2244555555555555533444432 1222 555555555554 34444222
Q ss_pred CCCCCCCcccEEEeecCccccccccccC-CCCcCCcCCCCCC
Q 038022 353 MHTSEWPALEILLVCGCDKLKIIAADLS-QNNENDQLGIPAQ 393 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~~l~~~~~~~~ 393 (402)
. ..++++|++|++++|. ++.+|..+. .+..|+.++++++
T Consensus 193 ~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 193 S-LKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp T-TTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred H-HhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 1 1445555555555544 444444321 2344444444443
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=2.8e-14 Score=148.64 Aligned_cols=180 Identities=16% Similarity=0.067 Sum_probs=123.3
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
..+++.+.+..|.+.+. +..+++| .|++++ .+|..+.++++|++|++++|.+.+ .+|. +++.++
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~-~~~~l~ 514 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-----EIPK-WIGRLE 514 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-----CCCG-GGGGCT
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC-----cCCh-HHhcCC
Confidence 46788888888888754 4456666 777776 456788899999999999999987 5777 488999
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc------------------------------
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ------------------------------ 325 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~------------------------------ 325 (402)
+|++|++++| .+.+..|.. ++++++|++|++++|.....+|.......
T Consensus 515 ~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 9999999984 788777876 78899999999998875556665432210
Q ss_pred --------------------------------ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022 326 --------------------------------VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK 373 (402)
Q Consensus 326 --------------------------------~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 373 (402)
...+..+++|+.|+++++.--..+|..+ +++++|+.|++++|...+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCS
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCC
Confidence 0012224567777777653222444433 556666666666666555
Q ss_pred ccccccCCCCcCCcCCCCCCCC
Q 038022 374 IIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 374 ~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
.+|..++++..|+.++++.++-
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCC
T ss_pred CCChHHhCCCCCCEEECCCCcc
Confidence 6666666666666666665553
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=1.1e-13 Score=128.30 Aligned_cols=162 Identities=17% Similarity=0.269 Sum_probs=98.9
Q ss_pred hhhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022 204 DALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL 277 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L 277 (402)
.....++.+.+.+|.+..+ +..+++| .|+++++. ++.+..+++|++|++++|.+++ +|. +..+++|
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~~~--l~~l~~L 131 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTP--LAGLSNL 131 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC------CGG--GTTCTTC
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC------chh--hcCCCCC
Confidence 3345666677776666655 3444444 56666522 2345666667777777766664 553 6666777
Q ss_pred cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCC
Q 038022 278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE 357 (402)
Q Consensus 278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~ 357 (402)
++|++++ +.++++ |. ++.+++|++|++++|. ++.++. ... +++|+.|+++++ .++.++. ...
T Consensus 132 ~~L~l~~-n~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~--------l~~L~~L~l~~n-~l~~~~~---l~~ 193 (308)
T 1h6u_A 132 QVLYLDL-NQITNI-SP--LAGLTNLQYLSIGNAQ-VSDLTP-LAN--------LSKLTTLKADDN-KISDISP---LAS 193 (308)
T ss_dssp CEEECCS-SCCCCC-GG--GGGCTTCCEEECCSSC-CCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GGG
T ss_pred CEEECCC-CccCcC-cc--ccCCCCccEEEccCCc-CCCChh-hcC--------CCCCCEEECCCC-ccCcChh---hcC
Confidence 7777776 366663 32 4566777777777664 555554 222 677777777765 5666554 256
Q ss_pred CCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 358 WPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
+++|++|++++|. +..+|. +..+..|+.++++++
T Consensus 194 l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 194 LPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEE
T ss_pred CCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCC
Confidence 6777777777765 566663 666667766666554
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.3e-13 Score=127.84 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=73.7
Q ss_pred hhhccccccccCCCccc--cccCCce-EEcccccc----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
...++.+++.++.+..+ +..+++| .|+++++. +. +..+++|++|++++|.+++ +|. +..+++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------VSA--IAGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------CGG--GTTCTTCC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------chh--hcCCCCCC
Confidence 34455555554444443 2333333 44444421 12 4555555555555555543 332 45555555
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW 358 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l 358 (402)
+|++++| .++++ |. ++.+++|++|++++|. ++.++. ... +++|+.|+++++ .++.++. ...+
T Consensus 111 ~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~--------l~~L~~L~l~~n-~l~~~~~---l~~l 172 (308)
T 1h6u_A 111 TLDLTST-QITDV-TP--LAGLSNLQVLYLDLNQ-ITNISP-LAG--------LTNLQYLSIGNA-QVSDLTP---LANL 172 (308)
T ss_dssp EEECTTS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCGG-GGG--------CTTCCEEECCSS-CCCCCGG---GTTC
T ss_pred EEECCCC-CCCCc-hh--hcCCCCCCEEECCCCc-cCcCcc-ccC--------CCCccEEEccCC-cCCCChh---hcCC
Confidence 5555552 45442 32 3455555555555543 444433 111 555555555544 3444433 1345
Q ss_pred CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
++|+.|++++|. ++.+|. +..+..|+.++++++
T Consensus 173 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 173 SKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS
T ss_pred CCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC
Confidence 555555555543 444443 444455555555444
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.4e-13 Score=126.52 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=134.2
Q ss_pred hhccccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022 207 RKCNAISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~ 279 (402)
..++.+.+..++++.+.... +.+ .|+++++ .+..+..+++|++|++++|.+++ +|. .+.+++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQV--DGTLPVLGT 81 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EEC--CSCCTTCCE
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------ccC--CCCCCcCCE
Confidence 45778888888888773332 234 7788773 35678999999999999999986 666 478999999
Q ss_pred EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW 358 (402)
Q Consensus 280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l 358 (402)
|++++ +.++. +|.. +.++++|++|++++|. ++.+|.. ... +++|++|+++++ +++.++.+.. ..+
T Consensus 82 L~Ls~-N~l~~-l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~~-~~l 147 (290)
T 1p9a_G 82 LDLSH-NQLQS-LPLL-GQTLPALTVLDVSFNR-LTSLPLGALRG--------LGELQELYLKGN-ELKTLPPGLL-TPT 147 (290)
T ss_dssp EECCS-SCCSS-CCCC-TTTCTTCCEEECCSSC-CCCCCSSTTTT--------CTTCCEEECTTS-CCCCCCTTTT-TTC
T ss_pred EECCC-CcCCc-Cchh-hccCCCCCEEECCCCc-CcccCHHHHcC--------CCCCCEEECCCC-CCCccChhhc-ccc
Confidence 99999 68998 5765 6899999999999986 8888753 333 899999999986 7888887653 678
Q ss_pred CcccEEEeecCcccccccccc-CCCCcCCcCCCCCCCC
Q 038022 359 PALEILLVCGCDKLKIIAADL-SQNNENDQLGIPAQQP 395 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp~~~-~~~~~l~~~~~~~~~~ 395 (402)
++|+.|++++|. ++.+|..+ ..+..|+.+++++++-
T Consensus 148 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 148 PKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp TTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence 999999999865 88999865 7789999999988764
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=1.9e-14 Score=146.78 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=77.7
Q ss_pred cccccCCCCCCCEEeecCcccccc-----cccCC-------CCCcccC--CCCCccEEEEeccCCCccccchHHHhcCCc
Q 038022 237 LFNEKVALPNLEALEISDINVDKI-----WHYNE-------IPAAVFP--HFQSLTRLVVWYCDKLKYIFVASMIGSLKQ 302 (402)
Q Consensus 237 ~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~-------lp~~~i~--~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~ 302 (402)
+|..++++++|++|++++|.+++. |.... +|.. ++ ++++|++|++++| .+.+.+|.+ ++++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTF-LKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTT-TTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHH-HhcCCC
Confidence 455566666666666666666540 10000 5553 55 6666666666663 444445554 456666
Q ss_pred cCeeeeecccccc--ccccccccc-------------------ccc----ccccccccceeecccccccc-eeCCCCCCC
Q 038022 303 LQHLDIRFCEDLQ--EIISENRAD-------------------QVI----PYFVFPQLTTLILQDLPKLR-CLYPGMHTS 356 (402)
Q Consensus 303 L~~L~l~~~~~l~--~lp~~~~~~-------------------~~~----~~~~l~~L~~L~L~~~~~L~-~l~~~~~~~ 356 (402)
|++|++++|..++ .+|...+.. ..+ .+..+++|++|+++++ ++. .+| .. +
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~--~ 350 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AF--G 350 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CC--E
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hh--C
Confidence 6666666554233 355433320 000 0111555555555554 344 454 22 4
Q ss_pred CCCcccEEEeecCccccccccccCCCCc-CCcCCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAADLSQNNE-NDQLGIPAQQ 394 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~-l~~~~~~~~~ 394 (402)
++++|++|++++|. +..+|..++.+.. |+.+++++++
T Consensus 351 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 351 SEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc
Confidence 55566666666544 4566666666666 6666666554
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.9e-13 Score=121.04 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=104.2
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|+++++ .+..+..+++|++|+|++|.+.. +|...+..+++|++|+|++
T Consensus 39 ~~~L~~L~Ls~n~i~~~--------------~~~~~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~- 97 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKL--------------EPGVFDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGT- 97 (229)
T ss_dssp CTTCSEEECCSSCCCCC--------------CTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred CCCCCEEEcCCCccCcc--------------CHHHhhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCC-
Confidence 45566666666665543 34567889999999999999975 8876678999999999998
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL 365 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~ 365 (402)
+.++.+ |...++.+++|++|++++|. ++.+|..... +++|++|+++++ +++.++... ...+++|+.|+
T Consensus 98 N~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQLTVL-PSAVFDRLVHLKELFMCCNK-LTELPRGIER--------LTHLTHLALDQN-QLKSIPHGA-FDRLSSLTHAY 165 (229)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSC-CCSCCTTGGG--------CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEE
T ss_pred CcCCcc-ChhHhCcchhhCeEeccCCc-ccccCccccc--------CCCCCEEECCCC-cCCccCHHH-HhCCCCCCEEE
Confidence 588885 44446789999999999885 8888877655 899999999985 788887653 36788999999
Q ss_pred eecCcc
Q 038022 366 VCGCDK 371 (402)
Q Consensus 366 l~~c~~ 371 (402)
+++++.
T Consensus 166 l~~N~~ 171 (229)
T 3e6j_A 166 LFGNPW 171 (229)
T ss_dssp CTTSCB
T ss_pred eeCCCc
Confidence 988763
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=5.4e-14 Score=138.74 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=78.9
Q ss_pred ccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccccee
Q 038022 270 VFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL 349 (402)
Q Consensus 270 ~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l 349 (402)
.++.+++|++|++++ +.+++..|..+.+.+++|++|++++|. ++.+|.... +++|+.|+|+++ .++.+
T Consensus 139 ~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~---------l~~L~~L~Ls~N-~l~~~ 206 (487)
T 3oja_A 139 DEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV---------FAKLKTLDLSSN-KLAFM 206 (487)
T ss_dssp CGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC---------CTTCCEEECCSS-CCCEE
T ss_pred hhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCc-ccccccccc---------CCCCCEEECCCC-CCCCC
Confidence 366677777777777 467765555533467777777777775 666654321 788888888875 67777
Q ss_pred CCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 350 YPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 350 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
|+.. ..+++|+.|++++|. +..+|..++.+..|..++++++.-
T Consensus 207 ~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 207 GPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred CHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 7654 677888888888865 777888888888888888877654
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=3.7e-14 Score=129.29 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=92.0
Q ss_pred hhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccc-------------
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWH------------- 262 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~------------- 262 (402)
+..++++.+.+|++..+ +.++++| .|+++++ .+..+..+++|++|++++|.+++.-.
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34566666666655544 2333444 5555442 12234555555555555555543000
Q ss_pred -----cCCCCCcccCCCCCccEEEEeccCCCccc-cchHHHhcCCccCeeeeeccccccccccc-ccccccccccccccc
Q 038022 263 -----YNEIPAAVFPHFQSLTRLVVWYCDKLKYI-FVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQL 335 (402)
Q Consensus 263 -----~~~lp~~~i~~l~~L~~L~L~~c~~l~~~-~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L 335 (402)
...++...++.+++|++|++++ +.++.+ +|.. ++++++|++|++++|. ++.++.. ... +++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNK-IQSIYCTDLRV--------LHQM 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSC-CCEECGGGGHH--------HHTC
T ss_pred CCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCC-CCcCCHHHhhh--------hhhc
Confidence 0013332244555555555555 344432 1333 4455555555555553 4444321 111 3444
Q ss_pred c----eeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 336 T----TLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 336 ~----~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
+ .|+++++ .+..++... ....+|+.|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus 176 ~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 176 PLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 4 5556553 466665544 345589999999876 8888876 4788899999988765
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=1.1e-13 Score=144.17 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=43.8
Q ss_pred CCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc
Q 038022 300 LKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL 379 (402)
Q Consensus 300 l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 379 (402)
+++|++|++++|...+.+|..++. +++|+.|+|+++.--..+|..+ +++++|+.|++++|...+.+|..+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~--------l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGS--------MPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGG--------CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccccEEECcCCcccccCCHHHhc--------cccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCCcccCcCChHH
Confidence 344555555555433345554444 5555555555542222444433 455555555555555444555555
Q ss_pred CCCCcCCcCCCCCCC
Q 038022 380 SQNNENDQLGIPAQQ 394 (402)
Q Consensus 380 ~~~~~l~~~~~~~~~ 394 (402)
+.+..|+.+++++++
T Consensus 701 ~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 701 SALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCCCCSEEECCSSE
T ss_pred hCCCCCCEEECcCCc
Confidence 555555555555543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.49 E-value=9.7e-14 Score=136.55 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=115.3
Q ss_pred hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
.+..++.+++.+|++..+ +.++++| .|+++++ .|..|.++++|++|+|++|.++. +|...|..+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l 103 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL------IPLGVFTGL 103 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS------CCTTSSTTC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc------cCcccccCC
Confidence 456788888888888776 4556666 7777763 35667888888888888888875 666556777
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc-ccccc-------------cc---cccccccccce
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS-ENRAD-------------QV---IPYFVFPQLTT 337 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~-------------~~---~~~~~l~~L~~ 337 (402)
++|++|+|++ +.+..+.|.. ++++++|++|++++|. +..++. ..... .. ..+..+++|+.
T Consensus 104 ~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 104 SNLTKLDISE-NKIVILLDYM-FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCCEEECTT-SCCCEECTTT-TTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCCEEECCC-CccccCChhH-ccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 7777777777 4677654544 5677777777777664 444432 22210 00 00112455555
Q ss_pred eecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 338 LILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 338 L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
|+++++ .+..++... ...+++|+.|++++|+.++.+|........|+.+++++++
T Consensus 181 L~l~~n-~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 181 LRLRHL-NINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEESC-CCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EeCCCC-cCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 555553 444554432 2567778888888888788887777666677777776653
No 37
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=9.9e-14 Score=127.55 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=79.9
Q ss_pred hhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022 206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~ 279 (402)
...++.+.+.++.+..+ +..+++| .|+++++.. ..+.++++|++|++++|.+++ +|. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSS--LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------GGG--GTTCTTCCE
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC------Chh--hccCCCCCE
Confidence 34445555555444443 2333333 444444211 115556666666666666553 443 555666666
Q ss_pred EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP 359 (402)
Q Consensus 280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~ 359 (402)
|++++ +.++++ + . ++.+++|++|++++|. ++.++ .... +++|++|+++++ .++.++. ...++
T Consensus 117 L~L~~-n~i~~~-~-~-l~~l~~L~~L~l~~n~-l~~~~-~l~~--------l~~L~~L~L~~N-~l~~~~~---l~~l~ 178 (291)
T 1h6t_A 117 LSLEH-NGISDI-N-G-LVHLPQLESLYLGNNK-ITDIT-VLSR--------LTKLDTLSLEDN-QISDIVP---LAGLT 178 (291)
T ss_dssp EECTT-SCCCCC-G-G-GGGCTTCCEEECCSSC-CCCCG-GGGG--------CTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred EECCC-CcCCCC-h-h-hcCCCCCCEEEccCCc-CCcch-hhcc--------CCCCCEEEccCC-ccccchh---hcCCC
Confidence 66665 355552 2 2 4556666666666553 44442 1222 555666666554 4555443 24555
Q ss_pred cccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
+|+.|++++|. ++.+|. +..+..|+.++++++
T Consensus 179 ~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 179 KLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEE
T ss_pred ccCEEECCCCc-CCCChh-hccCCCCCEEECcCC
Confidence 66666665543 555543 555555555555443
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=8.2e-14 Score=128.90 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=134.8
Q ss_pred hhhhhccccccccCCCccc----cccCCce-EEcccccc-------ccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022 204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-------FNEKVALPNLEALEISDINVDKIWHYNEIPAAVF 271 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i 271 (402)
..+..++++.+.+|++..+ +.++++| .|+++++. +..+..+++|++|++++|.+.. +|.. +
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------l~~~-~ 97 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------MSSN-F 97 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE------EEEE-E
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc------Chhh-c
Confidence 3457899999999998876 3566777 88888743 4556679999999999999986 8875 8
Q ss_pred CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccce--
Q 038022 272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRC-- 348 (402)
Q Consensus 272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~-- 348 (402)
..+++|++|++++ +.++++.+...+.++++|++|++++|. +..++ ..... +++|++|+++++ .+..
T Consensus 98 ~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~ 166 (306)
T 2z66_A 98 LGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG--------LSSLEVLKMAGN-SFQENF 166 (306)
T ss_dssp ETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT--------CTTCCEEECTTC-EEGGGE
T ss_pred CCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCc-CCccchhhccc--------CcCCCEEECCCC-cccccc
Confidence 8999999999999 588885442447899999999999986 55444 33333 899999999987 4554
Q ss_pred eCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCCC
Q 038022 349 LYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 349 l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~~ 394 (402)
+|... ..+++|++|++++|. ++.+ |..++.+..|+.+++++++
T Consensus 167 ~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 167 LPDIF--TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp ECSCC--TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred chhHH--hhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence 55544 789999999999987 5555 7789999999999998876
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.8e-13 Score=120.52 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=72.7
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
..+..+++|++|+|++|.+++ ++...|..+++|++|+|++ +.++.+ |...++++++|++|++++|. +..++
T Consensus 50 ~~~~~l~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~ 120 (220)
T 2v9t_B 50 GAFSPYKKLRRIDLSNNQISE------LAPDAFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQLLLLNANK-INCLR 120 (220)
T ss_dssp TSSTTCTTCCEEECCSSCCCE------ECTTTTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred hHhhCCCCCCEEECCCCcCCC------cCHHHhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCEEECCCCC-CCEeC
Confidence 356677777777777777765 4333477777777777777 467764 44445677777777777764 55554
Q ss_pred cc-cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 319 SE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 319 ~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
.. ... +++|+.|+|+++ +++.++... ...+++|+.|++++++
T Consensus 121 ~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 121 VDAFQD--------LHNLNLLSLYDN-KLQTIAKGT-FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred HHHcCC--------CCCCCEEECCCC-cCCEECHHH-HhCCCCCCEEEeCCCC
Confidence 32 222 677777777764 566666543 2556777777777655
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=5.2e-14 Score=147.08 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=85.1
Q ss_pred cccccCCCCCCCEEeecCcccccc-----cccC-------CCCCcccC--CCCCccEEEEeccCCCccccchHHHhcCCc
Q 038022 237 LFNEKVALPNLEALEISDINVDKI-----WHYN-------EIPAAVFP--HFQSLTRLVVWYCDKLKYIFVASMIGSLKQ 302 (402)
Q Consensus 237 ~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~-------~lp~~~i~--~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~ 302 (402)
+|..++++++|++|+|++|.+++. |-.. .+|.. ++ .+++|++|+|++| .+.+.+|.. ++++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC-PNMTQLPDF-LYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC-TTCCSCCGG-GGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC-CCCccChHH-HhCCCC
Confidence 566778888888888888887750 1000 16764 66 7888888888875 555556765 677888
Q ss_pred cCeeeeecccccc--cccccccccc--------------------cc----ccccccccceeecccccccceeCCCCCCC
Q 038022 303 LQHLDIRFCEDLQ--EIISENRADQ--------------------VI----PYFVFPQLTTLILQDLPKLRCLYPGMHTS 356 (402)
Q Consensus 303 L~~L~l~~~~~l~--~lp~~~~~~~--------------------~~----~~~~l~~L~~L~L~~~~~L~~l~~~~~~~ 356 (402)
|++|++++|..+. .+|...+... .+ .+..+++|+.|+++++ .+..+| .. +
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~--~ 592 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AF--G 592 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CC--C
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hh--c
Confidence 8888887775344 3555433210 00 0112445555555543 344444 22 4
Q ss_pred CCCcccEEEeecCccccccccccCCCCc-CCcCCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAADLSQNNE-NDQLGIPAQQ 394 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~-l~~~~~~~~~ 394 (402)
++++|+.|++++|. +..+|..++.+.. |+.+++++++
T Consensus 593 ~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred CCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence 55555555555544 3455555555555 5555555543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.7e-13 Score=138.65 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
..++.+++.+|.+.++ +..+++| .|++++ ..|..|+.+++|++|+|++|.+++ +|...|+.+++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~l~~ 148 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPK 148 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC------CCHHHhccCCC
Confidence 3455555555555544 2333344 455544 122334555555555555555553 55443455555
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeecc
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFC 311 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~ 311 (402)
|++|++++ +.++++.|.. ++++++|++|++++|
T Consensus 149 L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 149 LTTLSMSN-NNLERIEDDT-FQATTSLQNLQLSSN 181 (597)
T ss_dssp CCEEECCS-SCCCBCCTTT-TTTCTTCCEEECTTS
T ss_pred CCEEEeeC-CcCCCCChhh-hhcCCcCcEEECcCC
Confidence 55555555 2455533333 455555555555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.9e-13 Score=138.40 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=52.8
Q ss_pred HhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc
Q 038022 297 IGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII 375 (402)
Q Consensus 297 i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 375 (402)
++.+++|++|++++|. +..+ |...+. +++|+.|+|+++ .+..+|... ..+++|+.|++++|. +..+
T Consensus 250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNE-LEKIMYHPFVK--------MQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGTT--------CSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSSC-CCCC
T ss_pred hccCCCCCEEECCCCc-cCCCCHHHhcC--------ccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCCC-CCcc
Confidence 4455666666666554 3333 333333 677777777764 566666544 567777777777765 6677
Q ss_pred ccccCCCCcCCcCCCCCCC
Q 038022 376 AADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 376 p~~~~~~~~l~~~~~~~~~ 394 (402)
|..++.+..|+.+++++++
T Consensus 317 ~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CcccccCCCCCEEECCCCC
Confidence 7777666667766666654
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=3.8e-13 Score=122.54 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=110.2
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
...++.+.+.+|.+..+ +.++++| .|+++++. +..+..+++|++|++++|.+.+ ..+|. .++.++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~-~~~~l~ 149 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPE-YFSNLT 149 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCG-GGGGCT
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCch-hhccCC
Confidence 35677777777777665 3445555 67776522 2357888889999999888874 12566 499999
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccC----eeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQ----HLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP 351 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~----~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~ 351 (402)
+|++|++++ +.++++.+.. +..+++|+ +|++++|. +..++..... ..+|+.|+++++ .++.++.
T Consensus 150 ~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~--------~~~L~~L~L~~n-~l~~~~~ 217 (276)
T 2z62_A 150 NLEHLDLSS-NKIQSIYCTD-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFK--------EIRLKELALDTN-QLKSVPD 217 (276)
T ss_dssp TCCEEECCS-SCCCEECGGG-GHHHHTCTTCCEEEECCSSC-CCEECTTSSC--------SCCEEEEECCSS-CCSCCCT
T ss_pred CCCEEECCC-CCCCcCCHHH-hhhhhhccccceeeecCCCc-ccccCccccC--------CCcccEEECCCC-ceeecCH
Confidence 999999999 5899864444 67777777 89999886 8888765443 668999999986 6998887
Q ss_pred CCCCCCCCcccEEEeecCc
Q 038022 352 GMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 352 ~~~~~~l~~L~~L~l~~c~ 370 (402)
.. ..++++|+.|++++++
T Consensus 218 ~~-~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 GI-FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TT-TTTCCSCCEEECCSSC
T ss_pred hH-hcccccccEEEccCCc
Confidence 64 3679999999999544
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=3e-13 Score=129.55 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
..++.+.+.+|.+..+ +..+++| .|++++ ..+..+.++++|++|++++|.++. +|...++.+++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~l~~ 142 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPK 142 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc------CCHHHhcCCCC
Confidence 4455555555555544 2333444 455544 123345555666666666665553 55543455555
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeecc
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFC 311 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~ 311 (402)
|++|++++ +.++++.|.. ++++++|++|++++|
T Consensus 143 L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 143 LTTLSMSN-NNLERIEDDT-FQATTSLQNLQLSSN 175 (390)
T ss_dssp CCEEECCS-SCCCBCCTTT-TSSCTTCCEEECCSS
T ss_pred CcEEECCC-CccCccChhh-ccCCCCCCEEECCCC
Confidence 55555555 3555533333 455555555555554
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.46 E-value=5.3e-13 Score=131.30 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=101.2
Q ss_pred hhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 207 RKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
..++.+.+..|.+..+ +.++++| .||++++ .+..+..+++|++|++++|.+.+ ++...+..+++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~ 153 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY------ISHRAFSGLNS 153 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE------ECTTSSTTCTT
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce------eChhhccCCCC
Confidence 4566777776666655 3345555 6666652 24556777777777777777765 44334777788
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS 356 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~ 356 (402)
|++|++++| .++.+ |...++++++|+.|++++|. +..++.. .+..+++|+.|++++++.+..++... .
T Consensus 154 L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~--~ 221 (477)
T 2id5_A 154 LEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLN-INAIRDY-------SFKRLYRLKVLEISHWPYLDTMTPNC--L 221 (477)
T ss_dssp CCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCC-CCEECTT-------CSCSCTTCCEEEEECCTTCCEECTTT--T
T ss_pred CCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCc-CcEeChh-------hcccCcccceeeCCCCccccccCccc--c
Confidence 888888874 77774 44446778888888887775 5555442 12227777777777776666666543 2
Q ss_pred CCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQ 393 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~ 393 (402)
...+|++|++++|. ++.+|. .++.+..|+.++++++
T Consensus 222 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 222 YGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp TTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred cCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC
Confidence 33355555555543 444442 3444444444444443
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2.6e-13 Score=120.16 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=109.5
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~ 323 (402)
++|++|++++|.+++ ++...+..+++|++|+|++ +.++.+ |...++++++|++|++++|. ++.+|... ..
T Consensus 40 ~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~-N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGS-NQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDR 110 (229)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCC-CCCCCc-ChhhcccCCCcCEEECCCCc-CCccChhHhCc
Confidence 789999999999997 6444699999999999999 689885 55547899999999999985 88887653 33
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
+++|++|+++++ +++.+|... ..+++|++|+++++. ++.+|. .+..+..|+.++++++.
T Consensus 111 --------l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 --------LVHLKELFMCCN-KLTELPRGI--ERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp --------CTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred --------chhhCeEeccCC-cccccCccc--ccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999999986 799998766 789999999999965 888886 47888999999998875
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=3.3e-13 Score=120.25 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=131.5
Q ss_pred hhhccccccccCC-Cccc----cccCCce-EEcccc-c-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022 206 LRKCNAISLRNNK-ESTT----MYSSSEI-TLDIST-L-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 206 ~~~~~~l~l~~~~-~~~~----~~~~~~L-~L~l~~-~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~ 273 (402)
...++.+.+.+|+ ++.+ +.++++| .|++++ + .+..+..+++|++|++++|.+++ +|. ++.
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~------lp~--~~~ 125 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM------FPD--LTK 125 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS------CCC--CTT
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc------ccc--ccc
Confidence 4678999999986 7776 4566777 788875 3 23568899999999999999986 886 778
Q ss_pred CCCcc---EEEEeccCCCccccchHHHhcCCccC-eeeeeccccccccccccccccccccccccccceeeccccccccee
Q 038022 274 FQSLT---RLVVWYCDKLKYIFVASMIGSLKQLQ-HLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL 349 (402)
Q Consensus 274 l~~L~---~L~L~~c~~l~~~~p~~~i~~l~~L~-~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l 349 (402)
+++|+ +|++++++.++.+ |...++++++|+ +|++++|. ++.+|..... .++|+.|++++++.++.+
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--------~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--------GTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEECTTTTT--------TCEEEEEECTTCTTCCEE
T ss_pred ccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccCHhhcC--------CCCCCEEEcCCCCCcccC
Confidence 88887 9999994489986 444478999999 99999886 8888875443 579999999998679999
Q ss_pred CCCCCCCCC-CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 350 YPGMHTSEW-PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 350 ~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
+.... ..+ ++|+.|++++++ ++.+|.. ....++.+.+.++
T Consensus 196 ~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 196 DKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC
T ss_pred CHHHh-hccccCCcEEECCCCc-cccCChh--HhccCceeeccCc
Confidence 87643 577 999999999955 8899986 4556666666554
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=3.4e-13 Score=136.08 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=99.2
Q ss_pred hhhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
....++.+.+.++.+..+ +..+++| .|+|+++.. ..+..+++|+.|+|++|.+.+ +|. ++.+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~--l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD------LSS--LKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC------CTT--STTCTTCC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC------Chh--hccCCCCC
Confidence 345566666666666555 4445555 666665221 126677777777777777764 553 67777777
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW 358 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l 358 (402)
+|+|++| .+..+ |. ++.+++|+.|+|++|. +..++ .... +++|+.|+|++| .+..+++ ...+
T Consensus 113 ~L~Ls~N-~l~~l-~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l 174 (605)
T 1m9s_A 113 SLSLEHN-GISDI-NG--LVHLPQLESLYLGNNK-ITDIT-VLSR--------LTKLDTLSLEDN-QISDIVP---LAGL 174 (605)
T ss_dssp EEECTTS-CCCCC-GG--GGGCTTCSEEECCSSC-CCCCG-GGGS--------CTTCSEEECCSS-CCCCCGG---GTTC
T ss_pred EEEecCC-CCCCC-cc--ccCCCccCEEECCCCc-cCCch-hhcc--------cCCCCEEECcCC-cCCCchh---hccC
Confidence 7777773 66663 32 5677777777777664 55552 2222 677777777765 4555544 2566
Q ss_pred CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
++|+.|+|++|. +..+| .++.+..|+.++++++
T Consensus 175 ~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp TTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSE
T ss_pred CCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCC
Confidence 777777777664 56664 3666666666666654
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.44 E-value=3.9e-13 Score=128.73 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=52.3
Q ss_pred HhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc
Q 038022 297 IGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII 375 (402)
Q Consensus 297 i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 375 (402)
++.+++|++|++++|. ++.+ |..... +++|++|+++++ +++.++... ..+++|++|++++|. +..+
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n~-l~~~ 310 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIMYHPFVK--------MQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHV 310 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGTT--------CSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSSC-CCCC
T ss_pred HcCCCCccEEECCCCc-CCCcChhHccc--------cccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCCc-ceec
Confidence 4455566666666554 4333 333222 677777777764 566666544 567777777777764 6677
Q ss_pred ccccCCCCcCCcCCCCCCC
Q 038022 376 AADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 376 p~~~~~~~~l~~~~~~~~~ 394 (402)
|..++.+..|+.+++++++
T Consensus 311 ~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CccccccCcCCEEECCCCc
Confidence 7777666667766666554
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=1.5e-13 Score=139.49 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=108.0
Q ss_pred hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
..|..++++++++|+++++ .+..|.++++|++|+|++|.+++ +|+..|..+++|++|+|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l--------------~~~~f~~l~~L~~L~Ls~N~i~~------i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHL--------------GSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp SSCTTCCEEECTTSCCCEE--------------CTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECT
T ss_pred CCCcCCCEEEeeCCCCCCC--------------CHHHHhCCCCCCEEECCCCcCCC------cChhHhcCCCCCCEEEcc
Confidence 3456788888888877764 23568889999999999998886 777678889999999999
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE 362 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~ 362 (402)
+ ++++.+ |...++++++|++|++++|. ++.+|.. ++. +++|++|+++++ .++.++.....+.+++|+
T Consensus 109 ~-N~l~~l-~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~--------L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 109 G-NPIQSL-ALGAFSGLSSLQKLVAVETN-LASLENFPIGH--------LKTLKELNVAHN-LIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp T-CCCCEE-CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTT--------CTTCCEEECCSS-CCCCCCCCGGGGGCTTCC
T ss_pred C-CcCCCC-CHHHhcCCCCCCEEECCCCc-CCCCChhhhhc--------CcccCeeccccC-ccccCCCchhhccchhhh
Confidence 8 588885 54447889999999998885 7777754 333 889999999875 566654433346788999
Q ss_pred EEEeecCccccccc-cccCC
Q 038022 363 ILLVCGCDKLKIIA-ADLSQ 381 (402)
Q Consensus 363 ~L~l~~c~~l~~lp-~~~~~ 381 (402)
+|++++|. ++.++ ..+..
T Consensus 177 ~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 177 HLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp EEECCSSC-CCEECGGGGHH
T ss_pred hhcccCcc-ccccccccccc
Confidence 99998866 55443 34433
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.5e-13 Score=114.14 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=105.9
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|.+.. +.+|..+..+++|++|++++|.+++ + . .++.+++|++|++++
T Consensus 23 ~~~L~~L~l~~n~l~~-------------~~i~~~~~~l~~L~~L~l~~n~l~~------~-~-~~~~l~~L~~L~Ls~- 80 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-------------GKIEGLTAEFVNLEFLSLINVGLIS------V-S-NLPKLPKLKKLELSE- 80 (168)
T ss_dssp TTSCSEEECCSCBCBT-------------TBCSSCCGGGGGCCEEEEESSCCCC------C-S-SCCCCSSCCEEEEES-
T ss_pred cccCCEEECCCCCCCh-------------hhHHHHHHhCCCCCEEeCcCCCCCC------h-h-hhccCCCCCEEECcC-
Confidence 3668888888777661 0135567888999999999999886 5 3 488899999999999
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCC---CCCCCCCCc
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYP---GMHTSEWPA 360 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~---~~~~~~l~~ 360 (402)
+.+++.+|.. ++.+++|++|++++|. ++.+| ..... +++|++|+++++ .+..++. . ....+++
T Consensus 81 N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~--------l~~L~~L~l~~N-~l~~~~~~~~~-~~~~l~~ 148 (168)
T 2ell_A 81 NRIFGGLDML-AEKLPNLTHLNLSGNK-LKDISTLEPLKK--------LECLKSLDLFNC-EVTNLNDYRES-VFKLLPQ 148 (168)
T ss_dssp CCCCSCCCHH-HHHCTTCCEEECBSSS-CCSSGGGGGGSS--------CSCCCEEECCSS-GGGTSTTHHHH-HHTTCSS
T ss_pred CcCchHHHHH-HhhCCCCCEEeccCCc-cCcchhHHHHhc--------CCCCCEEEeeCC-cCcchHHHHHH-HHHhCcc
Confidence 4888855654 6779999999999885 78776 34333 899999999986 6777765 1 1267899
Q ss_pred ccEEEeecCcccccccccc
Q 038022 361 LEILLVCGCDKLKIIAADL 379 (402)
Q Consensus 361 L~~L~l~~c~~l~~lp~~~ 379 (402)
|++|++++|. ...+|.+.
T Consensus 149 L~~L~l~~n~-~~~~~~~~ 166 (168)
T 2ell_A 149 LTYLDGYDRE-DQEAPDSD 166 (168)
T ss_dssp CCEETTEETT-SCBCCSSS
T ss_pred CcEecCCCCC-hhhccccc
Confidence 9999999987 67777653
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=2.6e-13 Score=135.84 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=73.5
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++++++.+|+++++ .|..+.++++|++|++++|.+++ +|...|+.+++|++|++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~- 83 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI--------------GHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSD- 83 (549)
T ss_dssp CTTCCEEECCSSCCCEE--------------CSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTT-
T ss_pred CCCccEEECcCCccCcc--------------ChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCC-
Confidence 46788888888887765 12344555555555555555544 3322355555555555555
Q ss_pred CCCccccchHHHhcCCccCeeeeecccccccc--ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEI 363 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l--p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~ 363 (402)
+.++++.|. .++++++|++|++++|. ++.+ |...+. +++|++|+++++..+..++... ..++++|++
T Consensus 84 n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~ 152 (549)
T 2z81_A 84 NHLSSLSSS-WFGPLSSLKYLNLMGNP-YQTLGVTSLFPN--------LTNLQTLRIGNVETFSEIRRID-FAGLTSLNE 152 (549)
T ss_dssp SCCCSCCHH-HHTTCTTCCEEECTTCC-CSSSCSSCSCTT--------CTTCCEEEEEESSSCCEECTTT-TTTCCEEEE
T ss_pred CccCccCHH-HhccCCCCcEEECCCCc-ccccchhhhhhc--------cCCccEEECCCCccccccCHhh-hhcccccCe
Confidence 245553222 24555555555555543 3322 222222 4555555555544344444321 134555555
Q ss_pred EEeecCccccccccccCCCCcCCcC
Q 038022 364 LLVCGCDKLKIIAADLSQNNENDQL 388 (402)
Q Consensus 364 L~l~~c~~l~~lp~~~~~~~~l~~~ 388 (402)
|++++|..-+..|..++.+..|+.+
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEE
T ss_pred eeccCCcccccChhhhhccccCceE
Confidence 5555544333344444444433333
No 53
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1e-12 Score=124.06 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=85.6
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccccc-----c-cccCCCCCCCE-EeecCcccccccccCCCCCcccCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----F-NEKVALPNLEA-LEISDINVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~-~~l~~l~~L~~-L~l~~~~~~~~~~~~~lp~~~i~~ 273 (402)
+..++++.+.+|+++.+ +.++++| .||++++. + ..|.++++|+. +.+++|.+.. +|...|..
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~------l~~~~f~~ 102 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY------INPEAFQN 102 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE------ECTTSBCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc------cCchhhhh
Confidence 45667777777777665 3344444 55554421 1 22344444333 2333344443 43333455
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCc--------------------------cCeeeeecccccccccccccccccc
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQ--------------------------LQHLDIRFCEDLQEIISENRADQVI 327 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~--------------------------L~~L~l~~~~~l~~lp~~~~~~~~~ 327 (402)
+++|++|++++ ++++.+.+.. .....+ |++|++++|. ++++|.....
T Consensus 103 l~~L~~L~l~~-n~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~---- 175 (350)
T 4ay9_X 103 LPNLQYLLISN-TGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN---- 175 (350)
T ss_dssp CTTCCEEEEEE-ECCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST----
T ss_pred ccccccccccc-cccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc----
Confidence 55555555554 2444422222 222333 4444554443 4444443222
Q ss_pred ccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022 328 PYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP 395 (402)
Q Consensus 328 ~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~ 395 (402)
.++|++|++.+++.++.+|.... ..+++|++|+++++. ++.+|.. +.++.+|+.++....+.
T Consensus 176 ----~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 176 ----GTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp ----TEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred ----ccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCc
Confidence 45666667766666777765432 456677777776653 6667653 45555555555544443
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=2e-13 Score=138.37 Aligned_cols=181 Identities=18% Similarity=0.120 Sum_probs=132.5
Q ss_pred ccCCCCCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccc
Q 038022 193 RNEDVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWH 262 (402)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~ 262 (402)
........|. ..+..++++++.+|.+.++ +.++++| +||++++ .|..|.++++|++|++++|.+++
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (606)
T 3vq2_A 19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--- 94 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC---
T ss_pred cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc---
Confidence 3333344443 3568899999999999887 4566777 8888873 35678899999999999999986
Q ss_pred cCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc--ccccccccccccccccccccceeec
Q 038022 263 YNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ--EIISENRADQVIPYFVFPQLTTLIL 340 (402)
Q Consensus 263 ~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~--~lp~~~~~~~~~~~~~l~~L~~L~L 340 (402)
+++..|+.+++|++|++++| .++++.|.. ++++++|++|++++|. +. .+|...+. +++|++|++
T Consensus 95 ---~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~--------l~~L~~L~L 160 (606)
T 3vq2_A 95 ---FSPGSFSGLTSLENLVAVET-KLASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSN--------LTNLVHVDL 160 (606)
T ss_dssp ---CCTTSSTTCTTCCEEECTTS-CCCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGT--------CTTCCEEEC
T ss_pred ---cChhhcCCcccCCEEEccCC-ccccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhh--------cCCCCEEEc
Confidence 53335999999999999994 788855455 7899999999999886 55 46776665 899999999
Q ss_pred ccccccceeCCCCCCCCCCcc----cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 341 QDLPKLRCLYPGMHTSEWPAL----EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 341 ~~~~~L~~l~~~~~~~~l~~L----~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+++ .++.+++... +.+++| .+|+++++. ++.+|........|+.++++++.
T Consensus 161 s~n-~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 161 SYN-YIQTITVNDL-QFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSS-CCCEECTTTT-HHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred cCC-cceecChhhh-hhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCc
Confidence 986 6777765421 334443 378887765 67777766666677777776664
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=5.3e-13 Score=131.63 Aligned_cols=170 Identities=15% Similarity=0.192 Sum_probs=115.8
Q ss_pred hccccccccCCCccc----cccCCce-EEccccccc---cccCCCCCCCEEeecCccccccccc----------C---CC
Q 038022 208 KCNAISLRNNKESTT----MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHY----------N---EI 266 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~----------~---~l 266 (402)
+++.+++.+|.+..+ +..+++| +||++++.. ..+..+++|++|++++|.++++... + .+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence 455666665555544 2334444 555555221 1255555666666665555431100 0 12
Q ss_pred CCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccc
Q 038022 267 PAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 267 p~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
|. ..+++|++|++++ +.++++.|.. ++++++|++|++++|. +..+ |..... .+++|+.|+|+++ .
T Consensus 115 ~~---~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~l~~-------~l~~L~~L~Ls~N-~ 180 (487)
T 3oja_A 115 SC---SRGQGKKNIYLAN-NKITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFAELAA-------SSDTLEHLNLQYN-F 180 (487)
T ss_dssp EE---CCCSSCEEEECCS-SCCCSGGGBC-GGGGSSEEEEECTTSC-CCEEEGGGGGG-------GTTTCCEEECTTS-C
T ss_pred Cc---cccCCCCEEECCC-CCCCCCCchh-hcCCCCCCEEECCCCC-CCCcChHHHhh-------hCCcccEEecCCC-c
Confidence 22 3467899999999 5899865655 7899999999999986 5554 443321 2899999999987 6
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
++.++.. ..+++|+.|++++|. +..+|..++.+..|+.+++++++-
T Consensus 181 l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 181 IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred ccccccc---ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC
Confidence 8888654 368999999999976 888999999999999999988763
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=9e-14 Score=131.37 Aligned_cols=147 Identities=22% Similarity=0.197 Sum_probs=104.7
Q ss_pred hhhccccccccCCCccc----cccCCce-EEccccc----cc-cccCCCCCCCEEeecCcccccccccCCCCC-cccCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTL----LF-NEKVALPNLEALEISDINVDKIWHYNEIPA-AVFPHF 274 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~----~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l 274 (402)
..+++.+.+.+|.+.++ +.++++| .||++++ ++ ..+.++++|++|++++|.+++ +|. ..+..+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~~l 148 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------LGETSLFSHL 148 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------SCSSCSCTTC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------cCchhhhccC
Confidence 46788888988888776 4456666 8888773 23 347889999999999999885 776 458889
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
++|++|++++|+.+..+.|.. ++++++|++|++++|. +..+ |..... +++|++|+++++ .++.++...
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~l~~--------l~~L~~L~l~~n-~l~~~~~~~ 217 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSYEPKSLKS--------IQNVSHLILHMK-QHILLLEIF 217 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTT--------CSEEEEEEEECS-CSTTHHHHH
T ss_pred CCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCccCHHHHhc--------cccCCeecCCCC-ccccchhhh
Confidence 999999999865677754544 6888999999998886 5554 444444 777777777765 355554321
Q ss_pred CCCCCCcccEEEeecCc
Q 038022 354 HTSEWPALEILLVCGCD 370 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~ 370 (402)
...+++|+.|++++|.
T Consensus 218 -~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 218 -VDVTSSVECLELRDTD 233 (353)
T ss_dssp -HHHTTTEEEEEEESCB
T ss_pred -hhhcccccEEECCCCc
Confidence 1235667777776654
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=3.1e-13 Score=131.99 Aligned_cols=178 Identities=15% Similarity=0.150 Sum_probs=115.2
Q ss_pred CCCCCCchhhhhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecCcccccccccC
Q 038022 196 DVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISDINVDKIWHYN 264 (402)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~ 264 (402)
.....|. .+..++++++.+|.+.++ +.++++| +|+++++. +..|..+++|++|++++|.+.+
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~----- 93 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ----- 93 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----
Confidence 3344453 568899999999998876 4455566 77776631 3457778888888888888775
Q ss_pred CCCCcccCCCCCccEEEEeccCCCccccch-HHHhcCCccCeeeeecccccccc-ccc-cccccccccccccccceeecc
Q 038022 265 EIPAAVFPHFQSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEI-ISE-NRADQVIPYFVFPQLTTLILQ 341 (402)
Q Consensus 265 ~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~l-p~~-~~~~~~~~~~~l~~L~~L~L~ 341 (402)
..|. .++.+++|++|++++| .+++..|. ..++++++|++|++++|. +..+ |.. ... +++|++|+++
T Consensus 94 ~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~--------l~~L~~L~L~ 162 (455)
T 3v47_A 94 LETG-AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLN--------MRRFHVLDLT 162 (455)
T ss_dssp ECTT-TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGG--------CTTCCEEECT
T ss_pred cChh-hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCC--------CCcccEEeCC
Confidence 2344 4778888888888874 66653232 225677888888888775 5555 332 333 7788888888
Q ss_pred cccccceeCCCCCCCCC--CcccEEEeecCccccccccc---------cCCCCcCCcCCCCCCC
Q 038022 342 DLPKLRCLYPGMHTSEW--PALEILLVCGCDKLKIIAAD---------LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 342 ~~~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~---------~~~~~~l~~~~~~~~~ 394 (402)
++ .+..+++... ..+ ++|+.|++++|. +..+|.. +.....|+.+++++++
T Consensus 163 ~n-~l~~~~~~~l-~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 163 FN-KVKSICEEDL-LNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp TC-CBSCCCTTTS-GGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred CC-cccccChhhh-hccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc
Confidence 75 4555544321 222 577788887766 5555432 2244678888888774
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=5e-13 Score=135.39 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=101.2
Q ss_pred hhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
..++.+.+.+|.+... +..+++| .|+++++ +|..+..+++|++|++++|.+.+ ..|...+..++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l~ 424 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-----VTEFSAFLSLE 424 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-----TTTTTTTTTCT
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-----ccChhhhhccc
Confidence 3455555555554432 2334444 5566552 34556677777777777777765 23323467777
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCCC
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
+|++|++++| .+.+..|.. ++++++|++|++++|. +.. +|...+. +++|++|++++| .++.+++..
T Consensus 425 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~ 492 (606)
T 3vq2_A 425 KLLYLDISYT-NTKIDFDGI-FLGLTSLNTLKMAGNS-FKDNTLSNVFAN--------TTNLTFLDLSKC-QLEQISWGV 492 (606)
T ss_dssp TCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTTT
T ss_pred cCCEEECcCC-CCCccchhh-hcCCCCCCEEECCCCc-CCCcchHHhhcc--------CCCCCEEECCCC-cCCccChhh
Confidence 7777777774 666655554 5677777777777775 443 4544443 667777777765 455554432
Q ss_pred CCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 354 HTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
..++++|++|++++|...+..|..++.+..|+.+++++++
T Consensus 493 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 493 -FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 2556666677776665333346666666666666666654
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1e-12 Score=122.88 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=96.2
Q ss_pred hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCc-------
Q 038022 207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAA------- 269 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~------- 269 (402)
..++.+.+.+|++..+ +.++++| .|++++ ..|..+.++++|++|++++|.++. +|..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE------LPEKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB------CCSSCCTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc------cChhhcccccE
Confidence 4556666666666554 3344444 555554 224556666666666666666553 3332
Q ss_pred --------------ccCCCCCccEEEEeccCCCcc--ccchHHHhcCCccCeeeeeccccccccccccccc---------
Q 038022 270 --------------VFPHFQSLTRLVVWYCDKLKY--IFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD--------- 324 (402)
Q Consensus 270 --------------~i~~l~~L~~L~L~~c~~l~~--~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~--------- 324 (402)
.+..+++|++|++++ +.++. ..|.. ++++++|++|++++|. ++.+|......
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGA-FQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBCTTG-GGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcChhh-ccCCCCcCEEECCCCc-cccCCccccccCCEEECCCC
Confidence 234444444444444 23321 22222 3445555555555443 44444321100
Q ss_pred -----cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 325 -----QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 325 -----~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
....+..+++|+.|+++++ .++.++... ...+++|++|++++|. +..+|..+..+..|+.+++++++
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 0012233677777777765 566666532 2567888888888865 77888888888888887777654
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=126.08 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=116.0
Q ss_pred hhhhccccccccCCCccc--------cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCC-Cc
Q 038022 205 ALRKCNAISLRNNKESTT--------MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIP-AA 269 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~--------~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp-~~ 269 (402)
....++.+.+..|.+... +..+++| .|++++ ..+..+..+++|++|++++|.+.+.- .+| ..
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~ 191 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAAL 191 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTS
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHH
Confidence 356788888888887763 2245566 677766 23466778888888888888764300 021 11
Q ss_pred ccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccc
Q 038022 270 VFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 270 ~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
.++.+++|++|++++| +++.+ |. ..++.+++|++|++++|. ++.+ |..... ...+++|++|+++++ +
T Consensus 192 ~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~-----~~~~~~L~~L~Ls~N-~ 262 (310)
T 4glp_A 192 CPHKFPAIQNLALRNT-GMETP-TGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPR-----CMWSSALNSLNLSFA-G 262 (310)
T ss_dssp CTTSSCCCCSCBCCSS-CCCCH-HHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSS-----CCCCTTCCCEECCSS-C
T ss_pred hhhcCCCCCEEECCCC-CCCch-HHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHh-----ccCcCcCCEEECCCC-C
Confidence 2467788888888884 77653 32 234677888888888886 5555 554443 111368888888875 6
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
++.+|... .++|++|++++|. ++.+|. +..+..|+.+++++++
T Consensus 263 l~~lp~~~----~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 263 LEQVPKGL----PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSCC----CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCchhhhh----cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 77877654 2788888888865 777766 6777888888887775
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=2.1e-13 Score=142.60 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=129.0
Q ss_pred hhhhccccccccCCCcc------------------c---cc--cCCce-EEcccc-----ccccccCCCCCCCEEeecCc
Q 038022 205 ALRKCNAISLRNNKEST------------------T---MY--SSSEI-TLDIST-----LLFNEKVALPNLEALEISDI 255 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~------------------~---~~--~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~ 255 (402)
...+++.+.+.+|.+++ + +. ++++| .|++++ .+|..++++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 34678899999999888 4 22 55566 677765 45778888888888888888
Q ss_pred c-cccccccCCCCCcccCC-------CCCccEEEEeccCCCccccch--HHHhcCCccCeeeeecccccccccccccccc
Q 038022 256 N-VDKIWHYNEIPAAVFPH-------FQSLTRLVVWYCDKLKYIFVA--SMIGSLKQLQHLDIRFCEDLQEIISENRADQ 325 (402)
Q Consensus 256 ~-~~~~~~~~~lp~~~i~~-------l~~L~~L~L~~c~~l~~~~p~--~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 325 (402)
. +++ ..+|.. ++. +++|++|++++ +.++. +|. . ++++++|++|++++|. +..+| ..+.
T Consensus 526 ~~lsg----~~iP~~-i~~L~~~~~~l~~L~~L~Ls~-N~L~~-ip~~~~-l~~L~~L~~L~Ls~N~-l~~lp-~~~~-- 593 (876)
T 4ecn_A 526 RGISA----AQLKAD-WTRLADDEDTGPKIQIFYMGY-NNLEE-FPASAS-LQKMVKLGLLDCVHNK-VRHLE-AFGT-- 593 (876)
T ss_dssp TTSCH----HHHHHH-HHHHHHCTTTTTTCCEEECCS-SCCCB-CCCHHH-HTTCTTCCEEECTTSC-CCBCC-CCCT--
T ss_pred CCccc----ccchHH-HHhhhhcccccCCccEEEeeC-CcCCc-cCChhh-hhcCCCCCEEECCCCC-cccch-hhcC--
Confidence 7 652 015543 443 44888999988 47886 566 5 7889999999998886 66887 5444
Q ss_pred ccccccccccceeecccccccceeCCCCCCCCCCc-ccEEEeecCccccccccccCCCCc--CCcCCCCCCCC
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA-LEILLVCGCDKLKIIAADLSQNNE--NDQLGIPAQQP 395 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~lp~~~~~~~~--l~~~~~~~~~~ 395 (402)
+++|+.|+++++ .+..+|... .++++ |+.|++++|. +..+|..++.... |+.+++++++-
T Consensus 594 ------L~~L~~L~Ls~N-~l~~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 594 ------NVKLTDLKLDYN-QIEEIPEDF--CAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ------TSEESEEECCSS-CCSCCCTTS--CEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ------CCcceEEECcCC-ccccchHHH--hhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcC
Confidence 899999999987 677888765 78898 9999999987 7799998887765 88888888763
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=1.2e-13 Score=140.76 Aligned_cols=169 Identities=14% Similarity=0.206 Sum_probs=126.3
Q ss_pred hhhhccccccccCCCcc------------------c---cc--cCCce-EEcccc-----ccccccCCCCCCCEEeecCc
Q 038022 205 ALRKCNAISLRNNKEST------------------T---MY--SSSEI-TLDIST-----LLFNEKVALPNLEALEISDI 255 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~------------------~---~~--~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~ 255 (402)
....++.+++..|.+++ + +. ++++| +|++++ .+|..++++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 34678899999988887 4 22 45555 666655 45677788888888888887
Q ss_pred c-cccccccCCCCCcccCCC------CCccEEEEeccCCCccccch--HHHhcCCccCeeeeecccccc-cccccccccc
Q 038022 256 N-VDKIWHYNEIPAAVFPHF------QSLTRLVVWYCDKLKYIFVA--SMIGSLKQLQHLDIRFCEDLQ-EIISENRADQ 325 (402)
Q Consensus 256 ~-~~~~~~~~~lp~~~i~~l------~~L~~L~L~~c~~l~~~~p~--~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~~ 325 (402)
. +++ ..+|.. ++.+ ++|++|++++| .++. +|. . ++++++|++|++++|. +. .+| ..+.
T Consensus 284 ~~l~~----~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~-ip~~~~-l~~l~~L~~L~L~~N~-l~g~ip-~~~~-- 351 (636)
T 4eco_A 284 RGISG----EQLKDD-WQALADAPVGEKIQIIYIGYN-NLKT-FPVETS-LQKMKKLGMLECLYNQ-LEGKLP-AFGS-- 351 (636)
T ss_dssp TTSCH----HHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSS-CCCHHH-HTTCTTCCEEECCSCC-CEEECC-CCEE--
T ss_pred CCCcc----ccchHH-HHhhhccccCCCCCEEECCCC-cCCc-cCchhh-hccCCCCCEEeCcCCc-Cccchh-hhCC--
Confidence 6 652 015653 5554 78888888874 6775 465 4 6788888888888776 55 777 5444
Q ss_pred ccccccccccceeecccccccceeCCCCCCCCCCc-ccEEEeecCccccccccccCCCC--cCCcCCCCCCCC
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA-LEILLVCGCDKLKIIAADLSQNN--ENDQLGIPAQQP 395 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~lp~~~~~~~--~l~~~~~~~~~~ 395 (402)
+++|++|+++++ .+..+|... .++++ |++|++++|. ++.+|..++... .|+.+++++++-
T Consensus 352 ------l~~L~~L~L~~N-~l~~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 352 ------EIKLASLNLAYN-QITEIPANF--CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp ------EEEESEEECCSS-EEEECCTTS--EEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ------CCCCCEEECCCC-ccccccHhh--hhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC
Confidence 899999999986 688888765 78899 9999999977 779999888766 889999988764
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1e-12 Score=114.42 Aligned_cols=131 Identities=20% Similarity=0.250 Sum_probs=73.0
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|+++.+ .+..+..+++|++|++++|.+++ +|...+..+++|++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~- 85 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL--------------PNGVFDELTSLTQLYLGGNKLQS------LPNGVFNKLTSLTYLNLST- 85 (208)
T ss_dssp CTTCSEEECCSSCCCCC--------------CTTTTTTCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred CCCCcEEEcCCCccCcC--------------ChhhhcccccCcEEECCCCccCc------cChhhcCCCCCcCEEECCC-
Confidence 45788888888877754 12234556666666666666654 5544455666666666666
Q ss_pred CCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
+.++.+ |...++++++|++|++++|. ++.+|... .. +++|++|+++++ .++.++... ...+++|+.|
T Consensus 86 n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L 153 (208)
T 2o6s_A 86 NQLQSL-PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDK--------LTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYI 153 (208)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred CcCCcc-CHhHhcCccCCCEEEcCCCc-CcccCHhHhcc--------CCcCCEEECCCC-ccceeCHHH-hccCCCccEE
Confidence 355553 33324556666666666553 55554431 22 566666666654 455555432 1445566666
Q ss_pred EeecC
Q 038022 365 LVCGC 369 (402)
Q Consensus 365 ~l~~c 369 (402)
+++++
T Consensus 154 ~l~~N 158 (208)
T 2o6s_A 154 WLHDN 158 (208)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 66553
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=1.7e-13 Score=127.23 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=98.8
Q ss_pred hhhccccccccCCCccc---cccC-----Cce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCc-c
Q 038022 206 LRKCNAISLRNNKESTT---MYSS-----SEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAA-V 270 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~---~~~~-----~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~-~ 270 (402)
...++++++.+|.+.+. +... ++| +|++++ ..+..++++++|++|++++|.+.+.. .+|.. .
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~ 196 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER---GLISALC 196 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH---HHHHHSC
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch---HHHHHHH
Confidence 45666677776666654 1111 444 555554 22355666677777777776654300 02221 1
Q ss_pred cCCCCCccEEEEeccCCCccc--cchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccce
Q 038022 271 FPHFQSLTRLVVWYCDKLKYI--FVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRC 348 (402)
Q Consensus 271 i~~l~~L~~L~L~~c~~l~~~--~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 348 (402)
++.+++|++|++++ +.++++ .+..++.++++|++|++++|. +...+... ....+++|++|+++++ +++.
T Consensus 197 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------~~~~l~~L~~L~Ls~N-~l~~ 267 (312)
T 1wwl_A 197 PLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP------SCDWPSQLNSLNLSFT-GLKQ 267 (312)
T ss_dssp TTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS------CCCCCTTCCEEECTTS-CCSS
T ss_pred hccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh------hhhhcCCCCEEECCCC-ccCh
Confidence 25666777777776 366631 233334566777777777664 44433100 0111677888888775 5777
Q ss_pred eCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 349 LYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 349 l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+|... . ++|++|++++|. ++.+|. +..+..|+.++++++.
T Consensus 268 ip~~~--~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGL--P--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSC--C--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhc--c--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 76654 2 678888887754 777766 7777777777777764
No 65
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=115.43 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=81.3
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII- 318 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp- 318 (402)
.+..+++|++|++++|.+++ +|...|..+++|++|+|++ +.++++.|. .++++++|++|++++|. +..++
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~------i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~ 122 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITD------IEEGAFEGASGVNEILLTS-NRLENVQHK-MFKGLESLKTLMLRSNR-ITCVGN 122 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCS-SCCCCCCGG-GGTTCSSCCEEECTTSC-CCCBCT
T ss_pred hhccCCCCCEEECCCCcCCE------ECHHHhCCCCCCCEEECCC-CccCccCHh-HhcCCcCCCEEECCCCc-CCeECH
Confidence 46778888888888888876 6654588888888888888 578875444 36788888888888775 66664
Q ss_pred cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
..... +++|+.|+|+++ +++.+++.. ...+++|+.|++++++
T Consensus 123 ~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIG--------LSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTT--------CTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred hHcCC--------CccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence 33333 788888888875 677775433 2577888888888766
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=1.5e-12 Score=114.57 Aligned_cols=130 Identities=16% Similarity=0.276 Sum_probs=97.5
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~ 323 (402)
++|+.|++++|.+++ +|...|..+++|++|+|++ +.++++.|.. +.++++|++|++++|. ++.+|... ..
T Consensus 32 ~~l~~L~l~~n~i~~------i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSN-NQISELAPDA-FQGLRSLNSLVLYGNK-ITELPKSLFEG 102 (220)
T ss_dssp TTCCEEECCSSCCCE------ECTTSSTTCTTCCEEECCS-SCCCEECTTT-TTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred cCCCEEECCCCcCCC------cCHhHhhCCCCCCEEECCC-CcCCCcCHHH-hhCCcCCCEEECCCCc-CCccCHhHccC
Confidence 578888888888886 6665588888888888888 5788865665 6788888888888875 77777653 22
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
+++|+.|+|+++ +++.+++.. ...+++|+.|++++|. ++.+|. .++.+..|+.++++++.
T Consensus 103 --------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 --------LFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp --------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------CCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 788888888875 677776543 2678888888888865 666665 47777788888887764
No 67
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.1e-12 Score=112.44 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=109.8
Q ss_pred CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-c
Q 038022 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-R 322 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~ 322 (402)
.++|++|++++|.+++ +|...+..+++|++|++++ ++++.+ |...++.+++|++|++++|. ++.+|... .
T Consensus 27 ~~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS------LPNGVFDELTSLTQLYLGG-NKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFD 97 (208)
T ss_dssp CTTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCcEEEcCCCccCc------CChhhhcccccCcEEECCC-CccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHhc
Confidence 4589999999999986 7776689999999999999 589985 55546899999999999986 88887642 3
Q ss_pred cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
. +++|++|+++++ +++.++... ...+++|++|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus 98 ~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 98 K--------LTQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp T--------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred C--------ccCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 3 899999999986 788888753 2679999999999975 7778875 7888999999998874
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=1.8e-13 Score=127.09 Aligned_cols=174 Identities=17% Similarity=0.101 Sum_probs=128.9
Q ss_pred hhhccccccccCCCccc----c--ccCCce-EEcccccc----ccccCCC-----CCCCEEeecCcccccccccCCCCCc
Q 038022 206 LRKCNAISLRNNKESTT----M--YSSSEI-TLDISTLL----FNEKVAL-----PNLEALEISDINVDKIWHYNEIPAA 269 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~--~~~~~L-~L~l~~~~----~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~lp~~ 269 (402)
..+++++.+.+|++.+. + ..+++| .||++++. |..++.+ ++|++|++++|.+.+ +|..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~------~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN------FSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC------CCTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc------chHH
Confidence 45788999999888754 1 456666 88888743 4455555 899999999999986 6654
Q ss_pred ccCCCCCccEEEEeccCCCccc--cchHH-HhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccc
Q 038022 270 VFPHFQSLTRLVVWYCDKLKYI--FVASM-IGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKL 346 (402)
Q Consensus 270 ~i~~l~~L~~L~L~~c~~l~~~--~p~~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L 346 (402)
.++.+++|++|++++| .+.+. .|..+ ++.+++|++|++++|. ++.++..... ....+++|++|+++++ ++
T Consensus 168 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~----~~~~l~~L~~L~Ls~N-~l 240 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSA----LAAARVQLQGLDLSHN-SL 240 (312)
T ss_dssp TCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHH----HHHTTCCCSEEECTTS-CC
T ss_pred HhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHH----HHhcCCCCCEEECCCC-cC
Confidence 6999999999999994 66653 23331 2789999999999996 7744421110 0012789999999986 67
Q ss_pred ceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 347 RCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 347 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
+..++......+++|++|++++|. ++.+|..+. ..|+.+++++++-
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC
T ss_pred CcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC
Confidence 775532223568999999999976 789999887 7888888888753
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=2.3e-12 Score=120.48 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred hccccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022 208 KCNAISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L 280 (402)
.++.+.+.++.+..+.... +.+ .|+++++ .+..+.++++|++|++++|.+++ ..|. .++.+++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~-~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-----ISPG-AFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-----BCTT-TTTTCTTCCEE
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-----eCHH-HhcCCCCCCEE
Confidence 4566777777776663322 334 7788773 23468999999999999999986 2355 58899999999
Q ss_pred EEeccCCCcc
Q 038022 281 VVWYCDKLKY 290 (402)
Q Consensus 281 ~L~~c~~l~~ 290 (402)
++++ +.++.
T Consensus 106 ~Ls~-n~l~~ 114 (330)
T 1xku_A 106 YLSK-NQLKE 114 (330)
T ss_dssp ECCS-SCCSB
T ss_pred ECCC-CcCCc
Confidence 9988 46665
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=133.24 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=93.0
Q ss_pred ccccccccCCCcccc--ccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022 209 CNAISLRNNKESTTM--YSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280 (402)
Q Consensus 209 ~~~l~l~~~~~~~~~--~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L 280 (402)
++.+.+.+|.+.... ..++.| .|+++++ .|..+.++++|++|++++|.++++- .+|. .++.+++|++|
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~-~~~~l~~L~~L 379 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS---KIAE-MTTQMKSLQQL 379 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH---HHHH-HHTTCTTCCEE
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc---cchH-HHhhCCCCCEE
Confidence 444444444443331 333344 4444441 2444555555555555555554200 0222 24555555555
Q ss_pred EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccc-cccceeecccccccceeCCCCCCCCCC
Q 038022 281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVF-PQLTTLILQDLPKLRCLYPGMHTSEWP 359 (402)
Q Consensus 281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~~~l~ 359 (402)
++++ +.+++.+|...+..+++|++|++++|.....+|.. + ++|+.|+++++ +++.+|... ..++
T Consensus 380 ~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------l~~~L~~L~Ls~N-~l~~ip~~~--~~l~ 444 (520)
T 2z7x_B 380 DISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-----------LPPRIKVLDLHSN-KIKSIPKQV--VKLE 444 (520)
T ss_dssp ECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-----------CCTTCCEEECCSS-CCCCCCGGG--GGCT
T ss_pred ECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhh-----------hcccCCEEECCCC-cccccchhh--hcCC
Confidence 5555 34544223322345555555555555422223221 3 57888888876 677777655 5788
Q ss_pred cccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 360 ALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
+|++|++++|. ++.+|.. +..+..|+.++++++.
T Consensus 445 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 445 ALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 88899998875 7788887 7788888888887764
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=1.5e-12 Score=131.87 Aligned_cols=170 Identities=16% Similarity=0.123 Sum_probs=84.6
Q ss_pred hhccccccccCCCccc---cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022 207 RKCNAISLRNNKESTT---MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL 277 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L 277 (402)
..++.+.+.+|.+..+ +.++++| .|+++++ .|..+..+++|++|++++|.+.+ .+|...+..+++|
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~l~~L 352 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-----ELGTGCLENLENL 352 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-----BCCSSTTTTCTTC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-----ccchhhhhccCcC
Confidence 3455555555555544 2233333 4555442 23445555566666666555543 3555446666667
Q ss_pred cEEEEeccCCCcccc--chHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccceeCCCCC
Q 038022 278 TRLVVWYCDKLKYIF--VASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH 354 (402)
Q Consensus 278 ~~L~L~~c~~l~~~~--p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 354 (402)
++|++++ +.+++.. |.. ++++++|++|++++|. +..++ ..... +++|++|+++++ .+........
T Consensus 353 ~~L~l~~-n~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~~ 420 (606)
T 3t6q_A 353 RELDLSH-DDIETSDCCNLQ-LRNLSHLQSLNLSYNE-PLSLKTEAFKE--------CPQLELLDLAFT-RLKVKDAQSP 420 (606)
T ss_dssp CEEECCS-SCCCEEEESTTT-TTTCTTCCEEECCSCS-CEEECTTTTTT--------CTTCSEEECTTC-CEECCTTCCT
T ss_pred CEEECCC-CccccccCcchh-cccCCCCCEEECCCCc-CCcCCHHHhcC--------CccCCeEECCCC-cCCCcccchh
Confidence 7777766 3565532 333 5666677777776664 33332 22222 555555555544 2333222111
Q ss_pred CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 355 TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 355 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
..++++|++|++++|......|..++.+..|+.++++++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 234555555555554433333444455555555555444
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.39 E-value=7.9e-13 Score=139.16 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=133.7
Q ss_pred eccCCCCCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----c-ccccCCCCCCCEEeecCcccccc
Q 038022 192 VRNEDVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----L-FNEKVALPNLEALEISDINVDKI 260 (402)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~-~~~l~~l~~L~~L~l~~~~~~~~ 260 (402)
.........|. .+..+++++++.|.++.+ +.++++| +||++++ + |..|.++++|++|+|++|.+.+
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~- 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF- 87 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-
Confidence 33334445564 678999999999999887 4556666 8888774 1 5678899999999999999886
Q ss_pred cccCCCCCcccCCCCCccEEEEeccCCCccccch-HHHhcCCccCeeeeeccccccccc--cccccccccccccccccce
Q 038022 261 WHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTT 337 (402)
Q Consensus 261 ~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~ 337 (402)
..|. .|+.+++|++|+|++| .+++..|. .+++++++|++|++++|. +..++ ...+. +++|++
T Consensus 88 ----~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~--------L~~L~~ 152 (844)
T 3j0a_A 88 ----LHPD-AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK--------LNSLKS 152 (844)
T ss_dssp ----ECTT-SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT--------CSSCCE
T ss_pred ----cCHh-HccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh--------CCCCCE
Confidence 2355 5899999999999985 77763343 336789999999999886 55543 23343 889999
Q ss_pred eecccccccceeCCCCCCCCC--CcccEEEeecCccccccccccCCCCc------CCcCCCCCCC
Q 038022 338 LILQDLPKLRCLYPGMHTSEW--PALEILLVCGCDKLKIIAADLSQNNE------NDQLGIPAQQ 394 (402)
Q Consensus 338 L~L~~~~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~~~~~~~------l~~~~~~~~~ 394 (402)
|+++++ .+..+.... ...+ ++|+.|++++|......|..++.... |+.+++++++
T Consensus 153 L~Ls~N-~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 153 IDFSSN-QIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp EEEESS-CCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EECCCC-cCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 999885 555554322 1334 78899999998877778877776654 8888888774
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1.3e-12 Score=121.51 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=112.2
Q ss_pred hhccccccccCCCccc--cccCCce-EEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 207 RKCNAISLRNNKESTT--MYSSSEI-TLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
..++.+.+.+|.+.+. +..+++| .||++++....+...++|++|++++|.+++ +|. ..+++|++|+++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~------~~~---~~~~~L~~L~l~ 128 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR------VSC---SRGQGKKNIYLA 128 (317)
T ss_dssp TTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE------EEE---CCCSSCEEEECC
T ss_pred CcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC------cCc---cccCCCCEEECC
Confidence 3444445554444433 2233333 445544444444444555555555555543 332 346789999999
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE 362 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~ 362 (402)
+ +.++++.|.. ++.+++|++|++++|. +..++.. .. ..+++|++|+++++ .++.++... .+++|+
T Consensus 129 ~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~ 194 (317)
T 3o53_A 129 N-NKITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFAELA-------ASSDTLEHLNLQYN-FIYDVKGQV---VFAKLK 194 (317)
T ss_dssp S-SCCCSGGGBC-TGGGSSEEEEECTTSC-CCEEEGGGGG-------GGTTTCCEEECTTS-CCCEEECCC---CCTTCC
T ss_pred C-CCCCCccchh-hhccCCCCEEECCCCC-CCcccHHHHh-------hccCcCCEEECCCC-cCccccccc---ccccCC
Confidence 9 5888865545 6889999999999986 6665432 21 12799999999987 688886543 589999
Q ss_pred EEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 363 ILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 363 ~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
+|++++|. ++.+|..+..+..|+.+++++++-
T Consensus 195 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 195 TLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp EEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred EEECCCCc-CCcchhhhcccCcccEEECcCCcc
Confidence 99999976 889999999999999999988763
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=2.8e-12 Score=110.67 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=106.3
Q ss_pred CchhhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022 201 PDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280 (402)
Q Consensus 201 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L 280 (402)
+.......++.+.+.+|.+.. ++.+..+++|++|++++|.+++ ..|.. ++.+++|++|
T Consensus 60 ~~l~~l~~L~~L~l~~n~~~~----------------~~~l~~l~~L~~L~l~~n~l~~-----~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNIHATN----------------YNPISGLSNLERLRIMGKDVTS-----DKIPN-LSGLTSLTLL 117 (197)
T ss_dssp TTGGGCTTCSEEEEESCCCSC----------------CGGGTTCTTCCEEEEECTTCBG-----GGSCC-CTTCTTCCEE
T ss_pred HHHhcCCCCCEEEccCCCCCc----------------chhhhcCCCCCEEEeECCccCc-----ccChh-hcCCCCCCEE
Confidence 333445678888888776554 3578899999999999999986 35664 8999999999
Q ss_pred EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022 281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA 360 (402)
Q Consensus 281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~ 360 (402)
++++| .+++..|.. ++.+++|++|++++|..++.+|. ... +++|++|++++| .++.++ . ...+++
T Consensus 118 ~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~-l~~--------l~~L~~L~l~~n-~i~~~~-~--l~~l~~ 182 (197)
T 4ezg_A 118 DISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITDIMP-LKT--------LPELKSLNIQFD-GVHDYR-G--IEDFPK 182 (197)
T ss_dssp ECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGG-GGG--------CSSCCEEECTTB-CCCCCT-T--GGGCSS
T ss_pred EecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccccHh-hcC--------CCCCCEEECCCC-CCcChH-H--hccCCC
Confidence 99994 888755665 78999999999999976888873 343 999999999987 688776 3 368999
Q ss_pred ccEEEeecCc
Q 038022 361 LEILLVCGCD 370 (402)
Q Consensus 361 L~~L~l~~c~ 370 (402)
|++|++++++
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 9999999866
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=1.4e-12 Score=130.98 Aligned_cols=164 Identities=14% Similarity=0.138 Sum_probs=118.3
Q ss_pred ccccccccCCCcccc--ccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCC--cccCCCCCcc
Q 038022 209 CNAISLRNNKESTTM--YSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPA--AVFPHFQSLT 278 (402)
Q Consensus 209 ~~~l~l~~~~~~~~~--~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~--~~i~~l~~L~ 278 (402)
++.+.+..|.+.... ..++++ .|++++ ..|..+.++++|++|++++|.+++ +|. ..++.+++|+
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN------FFKVALMTKNMSSLE 406 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB------TTHHHHTTTTCTTCC
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC------cccchhhhcCCCCCC
Confidence 566666666655442 445555 666666 245667788888888888888775 442 2367788888
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccc-cccceeecccccccceeCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVF-PQLTTLILQDLPKLRCLYPGMHTSE 357 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~~~ 357 (402)
+|++++ +.+++.+|...+..+++|++|++++|..-..+|.. + ++|+.|+++++ +++.+|... ..
T Consensus 407 ~L~l~~-N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------l~~~L~~L~L~~N-~l~~ip~~~--~~ 471 (562)
T 3a79_B 407 TLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-----------LPPKVKVLDLHNN-RIMSIPKDV--TH 471 (562)
T ss_dssp EEECTT-SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-----------CCTTCSEEECCSS-CCCCCCTTT--TS
T ss_pred EEECCC-CcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-----------hcCcCCEEECCCC-cCcccChhh--cC
Confidence 888888 46776345544667788888888877632334432 4 68999999987 788998876 58
Q ss_pred CCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022 358 WPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ 394 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~ 394 (402)
+++|++|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus 472 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 472 LQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 9999999999865 8899998 8888999999988874
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=8.9e-13 Score=122.23 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=126.1
Q ss_pred hhccccccccCCCccc----c--ccCCce-EEccccccc---------cccCCCCCCCEEeecCcccccccccCCCCCcc
Q 038022 207 RKCNAISLRNNKESTT----M--YSSSEI-TLDISTLLF---------NEKVALPNLEALEISDINVDKIWHYNEIPAAV 270 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~----~--~~~~~L-~L~l~~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~ 270 (402)
..++.+++.+|.+.+. + ..+++| .|+++++.. ..+..+++|++|++++|.+.+ +|...
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~ 164 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------FSCEQ 164 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------CCTTS
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------hhHHH
Confidence 4588899998888765 2 445666 778877432 234579999999999999986 66556
Q ss_pred cCCCCCccEEEEeccCCCcc---ccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccc
Q 038022 271 FPHFQSLTRLVVWYCDKLKY---IFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLR 347 (402)
Q Consensus 271 i~~l~~L~~L~L~~c~~l~~---~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~ 347 (402)
++.+++|++|++++| .+.+ +.+...++.+++|++|++++|. ++.++..... -...+++|++|+++++ .++
T Consensus 165 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~----l~~~l~~L~~L~Ls~N-~l~ 237 (310)
T 4glp_A 165 VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA----LAAAGVQPHSLDLSHN-SLR 237 (310)
T ss_dssp CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH----HHHHTCCCSSEECTTS-CCC
T ss_pred hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH----HHhcCCCCCEEECCCC-CCC
Confidence 999999999999994 6654 2222224689999999999996 7766652110 0012799999999986 677
Q ss_pred ee-CCCCCCCCC---CcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 348 CL-YPGMHTSEW---PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 348 ~l-~~~~~~~~l---~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
.+ |... +.+ ++|++|++++|. ++.+|..+. ..|+.+++++++-
T Consensus 238 ~~~p~~~--~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 238 ATVNPSA--PRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCCSCC--SSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCC
T ss_pred ccchhhH--HhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcC
Confidence 76 5443 344 799999999876 889999885 7888999887753
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=2.5e-12 Score=120.96 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=89.5
Q ss_pred hhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022 205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT 278 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~ 278 (402)
....++++++.+|.+..+ +..+++| .|+++++. .+.+..+++|++|++++|.+.+ +|. +..+++|+
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~------~~~--~~~l~~L~ 135 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD------ISP--LANLTKMY 135 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC------CGG--GTTCTTCC
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC------chh--hccCCcee
Confidence 345556666665555544 3334444 55554421 1335555555555555555553 443 55555556
Q ss_pred EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022 279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW 358 (402)
Q Consensus 279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l 358 (402)
+|++++|..+.. ++. ++.+++|++|++++|. +..++. .. .+++|++|++++| .+..++. ...+
T Consensus 136 ~L~l~~n~~~~~-~~~--~~~l~~L~~L~l~~~~-~~~~~~-~~--------~l~~L~~L~l~~n-~l~~~~~---~~~l 198 (347)
T 4fmz_A 136 SLNLGANHNLSD-LSP--LSNMTGLNYLTVTESK-VKDVTP-IA--------NLTDLYSLSLNYN-QIEDISP---LASL 198 (347)
T ss_dssp EEECTTCTTCCC-CGG--GTTCTTCCEEECCSSC-CCCCGG-GG--------GCTTCSEEECTTS-CCCCCGG---GGGC
T ss_pred EEECCCCCCccc-ccc--hhhCCCCcEEEecCCC-cCCchh-hc--------cCCCCCEEEccCC-ccccccc---ccCC
Confidence 666655433333 222 4555666666665553 444433 12 2677777777765 4555554 2566
Q ss_pred CcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
++|+.|++++|. +..++. ++.+..|+.+++++++
T Consensus 199 ~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 199 TSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC
T ss_pred CccceeecccCC-CCCCch-hhcCCcCCEEEccCCc
Confidence 777777777754 555555 6667777777776664
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=2.3e-12 Score=120.60 Aligned_cols=131 Identities=11% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ 325 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 325 (402)
+|++|++++|.+++ ++...+..+++|++|++++ +.++++.|.. ++.+++|++|++++|. ++.+|.....
T Consensus 194 ~L~~L~l~~n~i~~------~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~-- 262 (332)
T 2ft3_A 194 TLNELHLDHNKIQA------IELEDLLRYSKLYRLGLGH-NQIRMIENGS-LSFLPTLRELHLDNNK-LSRVPAGLPD-- 262 (332)
T ss_dssp SCSCCBCCSSCCCC------CCTTSSTTCTTCSCCBCCS-SCCCCCCTTG-GGGCTTCCEEECCSSC-CCBCCTTGGG--
T ss_pred CCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCC-CcCCcCChhH-hhCCCCCCEEECCCCc-CeecChhhhc--
Confidence 44444444444443 4433466777777777777 4677643333 5677777777777664 6677765544
Q ss_pred ccccccccccceeecccccccceeCCCCCCC-----CCCcccEEEeecCccc--cccccccCCCCcCCcCCCCCCC
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTS-----EWPALEILLVCGCDKL--KIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~-----~l~~L~~L~l~~c~~l--~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+++|+.|+++++ .++.++...... ..++|+.|++++++.. ...|..+..+..|+.+++++++
T Consensus 263 ------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 ------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777777764 566666543211 1456777777777643 3455566667777777776654
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=111.97 Aligned_cols=130 Identities=11% Similarity=0.210 Sum_probs=101.7
Q ss_pred CCCCEEeecCcccccccccCCC-CCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cc
Q 038022 245 PNLEALEISDINVDKIWHYNEI-PAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NR 322 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~l-p~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~ 322 (402)
..+++|++++|.+++ + |...|..+++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.++.. ..
T Consensus 32 ~~~~~L~L~~N~l~~------~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 102 (220)
T 2v70_A 32 QYTAELRLNNNEFTV------LEATGIFKKLPQLRKINFSN-NKITDIEEGA-FEGASGVNEILLTSNR-LENVQHKMFK 102 (220)
T ss_dssp TTCSEEECCSSCCCE------ECCCCCGGGCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCGGGGT
T ss_pred CCCCEEEcCCCcCCc------cCchhhhccCCCCCEEECCC-CcCCEECHHH-hCCCCCCCEEECCCCc-cCccCHhHhc
Confidence 356899999999986 5 444578899999999998 5898865544 7889999999999886 7777654 33
Q ss_pred cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCCC
Q 038022 323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~~ 394 (402)
. +++|++|+++++ +++.+++.. ...+++|++|++++|. ++.+ |..++.+..|+.++++++.
T Consensus 103 ~--------l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 G--------LESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp T--------CSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred C--------CcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 3 889999999986 687776543 2678999999998866 6666 7788888889888888774
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=8.9e-13 Score=135.43 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=126.0
Q ss_pred CCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCC
Q 038022 198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIP 267 (402)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp 267 (402)
...|. ..+..++++++.+|.+..+ +.++++| +||++++ .|..+.++++|++|++++|.+++ +|
T Consensus 17 ~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~ 89 (680)
T 1ziw_A 17 TQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ------LS 89 (680)
T ss_dssp SSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC------CC
T ss_pred ccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc------cC
Confidence 34443 3457899999999998876 4566777 8888763 35678899999999999999986 88
Q ss_pred CcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeeccccccc
Q 038022 268 AAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKL 346 (402)
Q Consensus 268 ~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L 346 (402)
...|+.+++|++|++++ +.++++.|.. ++++++|++|++++|. +..++ ...+. +++|++|+++++ ++
T Consensus 90 ~~~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l 157 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMS-NSIQKIKNNP-FVKQKNLITLDLSHNG-LSSTKLGTQVQ--------LENLQELLLSNN-KI 157 (680)
T ss_dssp TTTTTTCTTCSEEECCS-SCCCCCCSCT-TTTCTTCCEEECCSSC-CSCCCCCSSSC--------CTTCCEEECCSS-CC
T ss_pred hhhhccCCCCCEEECCC-CccCccChhH-ccccCCCCEEECCCCc-ccccCchhhcc--------cccCCEEEccCC-cc
Confidence 76689999999999999 4888865555 7899999999999886 55544 33333 899999999986 56
Q ss_pred ceeCCCCC-CCCCCcccEEEeecCccccccccccCCCCcCCcCCC
Q 038022 347 RCLYPGMH-TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGI 390 (402)
Q Consensus 347 ~~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~ 390 (402)
+.++.... ...+++|++|++++|..-+..|..++.+..++.+++
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 66654311 135688999999988643334445555544444333
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=4.7e-12 Score=119.08 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=121.2
Q ss_pred hhhhhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022 203 EDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276 (402)
Q Consensus 203 ~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~ 276 (402)
......++.+.+.+|.+..+ +..+++| .|+++++.. ..+..+++|++|++++|.... .++. +..+++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~--~~~l~~ 156 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS-----DLSP--LSNMTG 156 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCC-----CCGG--GTTCTT
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcc-----cccc--hhhCCC
Confidence 34457788888888887776 5566666 788877321 237788889999998886554 2443 788888
Q ss_pred ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022 277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS 356 (402)
Q Consensus 277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~ 356 (402)
|++|++++| .+... +. ++.+++|++|++++|. +..++. ... +++|+.|+++++ .+..++. ..
T Consensus 157 L~~L~l~~~-~~~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~--------l~~L~~L~l~~n-~l~~~~~---~~ 218 (347)
T 4fmz_A 157 LNYLTVTES-KVKDV-TP--IANLTDLYSLSLNYNQ-IEDISP-LAS--------LTSLHYFTAYVN-QITDITP---VA 218 (347)
T ss_dssp CCEEECCSS-CCCCC-GG--GGGCTTCSEEECTTSC-CCCCGG-GGG--------CTTCCEEECCSS-CCCCCGG---GG
T ss_pred CcEEEecCC-CcCCc-hh--hccCCCCCEEEccCCc-cccccc-ccC--------CCccceeecccC-CCCCCch---hh
Confidence 999999885 67774 43 5788899999998885 676665 222 888888888876 5666654 26
Q ss_pred CCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.+++|++|++++|. ++.+|. ++.+..|+.+++++++
T Consensus 219 ~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred cCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCc
Confidence 78889999998876 777777 7788888888887764
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=8.2e-13 Score=110.96 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=109.3
Q ss_pred CCCCCCCEEeecCcccc-cccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-ccc
Q 038022 242 VALPNLEALEISDINVD-KIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IIS 319 (402)
Q Consensus 242 ~~l~~L~~L~l~~~~~~-~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~ 319 (402)
...++|+.|++++|.++ + .+|.. +..+++|++|++++| .++++ .. ++.+++|++|++++|. +.. +|.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~-----~i~~~-~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDG-----KIEGL-TAEFVNLEFLSLINV-GLISV--SN-LPKLPKLKKLELSENR-IFGGLDM 89 (168)
T ss_dssp SCTTSCSEEECCSCBCBTT-----BCSSC-CGGGGGCCEEEEESS-CCCCC--SS-CCCCSSCCEEEEESCC-CCSCCCH
T ss_pred CCcccCCEEECCCCCCChh-----hHHHH-HHhCCCCCEEeCcCC-CCCCh--hh-hccCCCCCEEECcCCc-CchHHHH
Confidence 34578999999999998 3 38884 899999999999995 79885 33 7899999999999997 666 665
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc----ccCCCCcCCcCCCCCCCC
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA----DLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~l~~~~~~~~~~ 395 (402)
.... +++|++|+++++ .++.++.......+++|++|++++|+ +..+|. .+..+..|+.++++.+..
T Consensus 90 ~~~~--------l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 LAEK--------LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHH--------CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhh--------CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5444 899999999987 78887632233789999999999987 788887 788899999999887654
No 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=124.44 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=97.9
Q ss_pred cccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 239 NEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 239 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
..+. .+++|++|+|++|.+++ +|...|..+++|++|+|++ +.++.+.+. .+.++++|++|++++|. +..+
T Consensus 57 ~~~~~~l~~L~~L~L~~N~i~~------i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~ 127 (361)
T 2xot_A 57 EWTPTRLTNLHSLLLSHNHLNF------ISSEAFVPVPNLRYLDLSS-NHLHTLDEF-LFSDLQALEVLLLYNNH-IVVV 127 (361)
T ss_dssp TSSSSCCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCS-SCCCEECTT-TTTTCTTCCEEECCSSC-CCEE
T ss_pred hhhhhcccccCEEECCCCcCCc------cChhhccCCCCCCEEECCC-CcCCcCCHH-HhCCCcCCCEEECCCCc-ccEE
Confidence 3455 88899999999999886 6655688899999999998 588885443 47889999999999886 6666
Q ss_pred cc-ccccccccccccccccceeecccccccceeCCCCCC--CCCCcccEEEeecCcccccccc-ccCCCCc--CCcCCCC
Q 038022 318 IS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT--SEWPALEILLVCGCDKLKIIAA-DLSQNNE--NDQLGIP 391 (402)
Q Consensus 318 p~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~--~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~--l~~~~~~ 391 (402)
+. .+.. +++|+.|+|+++ +++.+|..... ..+++|+.|+++++. ++.+|. .+..+.. ++.++++
T Consensus 128 ~~~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 128 DRNAFED--------MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CTTTTTT--------CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECC
T ss_pred CHHHhCC--------cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEec
Confidence 43 3333 889999999985 78888765421 468899999998865 777774 3444433 2445555
Q ss_pred CC
Q 038022 392 AQ 393 (402)
Q Consensus 392 ~~ 393 (402)
++
T Consensus 198 ~N 199 (361)
T 2xot_A 198 NN 199 (361)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=129.06 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=126.3
Q ss_pred hhhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 206 LRKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
...++.+.+.+|.+... +..+++| .|+++++ ++..+..+++|+.|++++|.+.+ ..|...+..+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l 420 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSL 420 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-----CTTSCTTTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc-----ccchhhhhcC
Confidence 34566666666665543 3345555 6777662 33447788888888888888876 3343458889
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc-cccccccccccccccccccccceeecccccccceeCCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL-QEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM 353 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l-~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 353 (402)
++|++|++++| .+.+..|.. ++++++|++|++++|... ..+|..... +++|+.|++++| +++.+++..
T Consensus 421 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~--------l~~L~~L~l~~n-~l~~~~~~~ 489 (570)
T 2z63_A 421 RNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQC-QLEQLSPTA 489 (570)
T ss_dssp TTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTTT
T ss_pred CCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCCcCccccchhhhhc--------ccCCCEEECCCC-ccccCChhh
Confidence 99999999995 788766655 788999999999998732 257766555 999999999987 677774432
Q ss_pred CCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 354 HTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 354 ~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
..++++|++|++++|. ++.+|. .++.+..|+.++++++.
T Consensus 490 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 490 -FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 2688999999999986 666665 57888999999998875
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=5.3e-12 Score=118.12 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=118.8
Q ss_pred hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
+..++.+.+.+|++..+ +.++++| .|++++ ..|..+.++++|++|++++|.++. +|.. +. +
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~-~~--~ 123 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE------IPPN-LP--S 123 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS------CCSS-CC--T
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc------cCcc-cc--c
Confidence 46789999999988876 4556666 788876 336778999999999999999985 8875 43 7
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc---cccccccc------------cccccccccccceeec
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE---IISENRAD------------QVIPYFVFPQLTTLIL 340 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~---lp~~~~~~------------~~~~~~~l~~L~~L~L 340 (402)
+|++|++++ +.++.+ |...++++++|++|++++|. ++. .|...... ..++...+++|++|++
T Consensus 124 ~L~~L~l~~-n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 124 SLVELRIHD-NRIRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp TCCEEECCS-SCCCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred cCCEEECCC-CccCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence 899999988 578885 44447888999999998875 442 22222210 0111112356777777
Q ss_pred ccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 341 QDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 341 ~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
+++ .++.++... ...+++|++|++++|. ++.+|. .++.+..|+.+++++++
T Consensus 201 ~~n-~i~~~~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 201 DHN-KIQAIELED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CSS-CCCCCCTTS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCC-cCCccCHHH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc
Confidence 764 555555432 2567788888888765 555554 67777777777777664
No 86
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.35 E-value=4.9e-12 Score=123.48 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=31.9
Q ss_pred ccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 332 FPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 332 l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+++|++|+++++ .++.+++.. ..++++|++|++++|.-....|..++.+..|+.+++++++
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 555555555554 444443321 2455666666666654322335556666666666665543
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=131.20 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCC
Q 038022 198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIP 267 (402)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp 267 (402)
..+|. ..+..++++++++|+++.+ +.++++| +||++++ .+..|.++++|++|++++|.+++ +|
T Consensus 20 ~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~ 92 (570)
T 2z63_A 20 YKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------LA 92 (570)
T ss_dssp SSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------EC
T ss_pred cccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc------cC
Confidence 34443 3467899999999988876 3455666 6676653 23456777777777777777765 55
Q ss_pred CcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccc
Q 038022 268 AAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 268 ~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
...|+.+++|++|++++ +.++.+.+.. ++++++|++|++++|. +.. +|...+. +++|++|+++++ .
T Consensus 93 ~~~~~~l~~L~~L~L~~-n~l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~--------l~~L~~L~l~~n-~ 160 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVE-TNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSN--------LTNLEHLDLSSN-K 160 (570)
T ss_dssp TTTTTTCTTCCEEECTT-SCCCCSTTCS-CTTCTTCCEEECCSSC-CCCCCCCGGGGG--------CTTCCEEECTTS-C
T ss_pred HhhhcCccccccccccc-cccccCCCcc-ccccccccEEecCCCc-cceecChhhhcc--------cCCCCEEeCcCC-c
Confidence 44577777777777777 4676643323 5677777777777765 443 4555444 777777777765 5
Q ss_pred cceeCCCCCCCCCCcc----cEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 346 LRCLYPGMHTSEWPAL----EILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L----~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
++.++... .+.+++| +.|++++|. ++.+|........|+.++++++
T Consensus 161 l~~~~~~~-~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 161 IQSIYCTD-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CCEECGGG-GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESC
T ss_pred cceecHHH-ccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccc
Confidence 55554331 1344555 667777755 4555444433335666666554
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=9.9e-14 Score=129.97 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=116.6
Q ss_pred hhhccccccccCCCccc-----cccCCce-EEccccc-----cccccCCCCCCCEEeecCc-ccccccccCCCCCcccCC
Q 038022 206 LRKCNAISLRNNKESTT-----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDI-NVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~ 273 (402)
..+++.+++.+|.+... +..+++| .|+++++ .+..+.++++|++|++++| .+++. .+|. .+..
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~-~~~~ 166 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQT-LLSS 166 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHH-HHHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----HHHH-HHhc
Confidence 46788888887776542 4566777 7777663 3456778888888888888 55520 1444 3677
Q ss_pred CCCccEEEEeccCCCccc-cchHHHhcCC-ccCeeeeeccc-cc--cccccccccccccccccccccceeecccccccce
Q 038022 274 FQSLTRLVVWYCDKLKYI-FVASMIGSLK-QLQHLDIRFCE-DL--QEIISENRADQVIPYFVFPQLTTLILQDLPKLRC 348 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~-~p~~~i~~l~-~L~~L~l~~~~-~l--~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 348 (402)
+++|++|++++|..+++. ++. .++.++ +|++|++++|. .+ ..+|..... +++|++|++++|..++.
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--------CPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------CTTCSEEECTTCTTCCG
T ss_pred CCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------CCCCCEEeCCCCCcCCH
Confidence 888888888886567753 243 367888 88888888884 23 345544333 88999999998865543
Q ss_pred -eCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCC
Q 038022 349 -LYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 349 -l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~ 393 (402)
.+... .++++|++|++++|..+..- ...++++..|+.++++++
T Consensus 238 ~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 238 DCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 23322 67789999999998733211 114677888888888877
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=8e-12 Score=114.73 Aligned_cols=151 Identities=16% Similarity=0.210 Sum_probs=121.8
Q ss_pred CchhhhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 201 PDEDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 201 ~~~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
+.......++.+.+.+|.+..+ +..+++| .|+++++. ++.+..+++|++|++++|.+++ +|. +..+
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~------~~~--l~~l 133 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD------ING--LVHL 133 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC------CGG--GGGC
T ss_pred hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC------Chh--hcCC
Confidence 3334457899999999998887 5566666 88888743 3558999999999999999986 654 8899
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH 354 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 354 (402)
++|++|++++ +.++++ + . ++.+++|++|++++|. +..++. ... +++|+.|+++++ .++.++.
T Consensus 134 ~~L~~L~l~~-n~l~~~-~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~--------l~~L~~L~L~~N-~i~~l~~--- 195 (291)
T 1h6t_A 134 PQLESLYLGN-NKITDI-T-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAG--------LTKLQNLYLSKN-HISDLRA--- 195 (291)
T ss_dssp TTCCEEECCS-SCCCCC-G-G-GGGCTTCSEEECCSSC-CCCCGG-GTT--------CTTCCEEECCSS-CCCBCGG---
T ss_pred CCCCEEEccC-CcCCcc-h-h-hccCCCCCEEEccCCc-cccchh-hcC--------CCccCEEECCCC-cCCCChh---
Confidence 9999999999 589884 4 3 7899999999999985 888775 443 999999999987 7888864
Q ss_pred CCCCCcccEEEeecCccccccccc
Q 038022 355 TSEWPALEILLVCGCDKLKIIAAD 378 (402)
Q Consensus 355 ~~~l~~L~~L~l~~c~~l~~lp~~ 378 (402)
...+++|+.|++++|+ +...|..
T Consensus 196 l~~l~~L~~L~l~~n~-i~~~~~~ 218 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQE-CLNKPIN 218 (291)
T ss_dssp GTTCTTCSEEEEEEEE-EECCCEE
T ss_pred hccCCCCCEEECcCCc-ccCCccc
Confidence 3689999999999976 5555553
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.34 E-value=1.9e-12 Score=131.43 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
+++++|+|++|.+++ +|...|..+++|++|+|++| +++++.|.+ ++++++|++|+|++|. ++.+|.. +..
T Consensus 52 ~~~~~LdLs~N~i~~------l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~-l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCC------CCHHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence 379999999999997 88767999999999999995 899965545 7899999999999996 8999865 333
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc--ccccccCCCCcCCcCCCCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK--IIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+++|++|+++++ +++.++... .+++++|++|++++|. +. .+|..++.+..|+.+++++++
T Consensus 123 --------L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 123 --------LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp --------CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred --------CCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 999999999997 788888753 3789999999999976 54 467888999999999998875
No 91
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.34 E-value=6.4e-12 Score=127.24 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=107.0
Q ss_pred hhccccccccCCCccc------cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022 207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF 274 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l 274 (402)
..++.+.+.+|.+... +..+++| .|+++++ .+..+..+++|++|++++|.+.+ ..|...+..+
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l 424 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-----KDAQSPFQNL 424 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC-----CTTCCTTTTC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC-----cccchhhhCc
Confidence 4455555555555443 2333444 5555542 24556666667777777666664 3344346777
Q ss_pred CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCC
Q 038022 275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG 352 (402)
Q Consensus 275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~ 352 (402)
++|++|++++| .+.+..|.. ++++++|++|++++|. +.. +|.. ..+..+++|+.|++++| +++.+++.
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~------~~~~~l~~L~~L~Ls~n-~l~~~~~~ 494 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQL-FDGLPALQHLNLQGNH-FPKGNIQKT------NSLQTLGRLEILVLSFC-DLSSIDQH 494 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTT-TTTCTTCCEEECTTCB-CGGGEECSS------CGGGGCTTCCEEECTTS-CCCEECTT
T ss_pred ccCCEEECCCC-ccCCcCHHH-HhCCCCCCEEECCCCC-CCccccccc------hhhccCCCccEEECCCC-ccCccChh
Confidence 77777777774 676654444 6777788888887775 433 1110 01223788888888886 56666543
Q ss_pred CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 353 MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
. ..++++|++|++++|.-....|..++++..| .+++++++-
T Consensus 495 ~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 495 A-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp T-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred h-hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 2 2678888888888887656667788888877 777777654
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.4e-12 Score=107.19 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=83.4
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|.+.. +.+|..+..+++|++|++++|.+++ + . .++.+++|++|++++
T Consensus 16 ~~~l~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~------~-~-~~~~l~~L~~L~Ls~- 73 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-------------GKLEGLTDEFEELEFLSTINVGLTS------I-A-NLPKLNKLKKLELSD- 73 (149)
T ss_dssp GGGCSEEECTTCBCBT-------------TBCCSCCTTCTTCCEEECTTSCCCC------C-T-TCCCCTTCCEEECCS-
T ss_pred CccCeEEEccCCcCCh-------------hHHHHHHhhcCCCcEEECcCCCCCC------c-h-hhhcCCCCCEEECCC-
Confidence 3567777777766651 0124556777888888888887775 4 2 377778888888887
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCCC--CCCCCCCcc
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPAL 361 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L 361 (402)
+.+++.+|.. ++.+++|++|++++|. ++.+| ..... +++|++|+++++ .++.++.. .....+++|
T Consensus 74 n~i~~~~~~~-~~~l~~L~~L~ls~N~-i~~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 74 NRVSGGLEVL-AEKCPNLTHLNLSGNK-IKDLSTIEPLKK--------LENLKSLDLFNC-EVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp SCCCSCTHHH-HHHCTTCCEEECTTSC-CCSHHHHGGGGG--------CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTC
T ss_pred CcccchHHHH-hhhCCCCCEEECCCCc-CCChHHHHHHhh--------CCCCCEEeCcCC-cccchHHHHHHHHHHCCCc
Confidence 4677644543 5667888888887775 66654 33333 777777777775 56666540 012456777
Q ss_pred cEEEee
Q 038022 362 EILLVC 367 (402)
Q Consensus 362 ~~L~l~ 367 (402)
+.|+++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 777664
No 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=7.6e-12 Score=122.30 Aligned_cols=157 Identities=20% Similarity=0.142 Sum_probs=84.1
Q ss_pred hhhccccccccCCCccc-cccCCce-EEcccccccc--ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022 206 LRKCNAISLRNNKESTT-MYSSSEI-TLDISTLLFN--EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV 281 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~-~~~~~~L-~L~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~ 281 (402)
...++++.+.+|+++++ +..+++| .|+++++... .++++++|++|++++|.+++ +| ++.+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~------l~---~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK------LD---VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC------CC---CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe------ec---CCCCCcCCEEE
Confidence 34555555555555544 2333333 4444442211 14455555555555555543 33 44555555555
Q ss_pred EeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc
Q 038022 282 VWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL 361 (402)
Q Consensus 282 L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L 361 (402)
+++ +.++++ | ++.+++|++|++++|..++.++ +..+++|++|+++++ +++.++ .+.+++|
T Consensus 134 l~~-N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L 193 (457)
T 3bz5_A 134 CAR-NTLTEI-D---VSHNTQLTELDCHLNKKITKLD----------VTPQTQLTTLDCSFN-KITELD----VSQNKLL 193 (457)
T ss_dssp CTT-SCCSCC-C---CTTCTTCCEEECTTCSCCCCCC----------CTTCTTCCEEECCSS-CCCCCC----CTTCTTC
T ss_pred CCC-Ccccee-c---cccCCcCCEEECCCCCcccccc----------cccCCcCCEEECCCC-ccceec----cccCCCC
Confidence 555 345552 2 3455555555555554344331 122677777777765 566665 2566777
Q ss_pred cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 362 EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 362 ~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+.|++++|. ++.+| ++.+..|+.+++++++
T Consensus 194 ~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 194 NRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CEEECcCCc-CCeec--cccCCCCCEEECcCCc
Confidence 777777755 56553 6667777777776654
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.3e-12 Score=118.14 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=114.3
Q ss_pred hhhhhhccccccccCCCccc--cccCCce-EEcccccc----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022 203 EDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ 275 (402)
Q Consensus 203 ~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~ 275 (402)
......++.+.+.+|++..+ +..+++| .|+++++. +. +..+++|++|++++|.+++ +|. +.. +
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------l~~--~~~-~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------LNG--IPS-A 106 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC------CTT--CCC-S
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC------cCc--ccc-C
Confidence 34567899999999988876 4556666 88888732 33 8899999999999999986 776 333 8
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT 355 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~ 355 (402)
+|++|++++ +.++++ |. ++.+++|++|++++|. ++.++ .... +++|+.|+++++ .+..+ .. .
T Consensus 107 ~L~~L~L~~-N~l~~~-~~--l~~l~~L~~L~Ls~N~-i~~~~-~l~~--------l~~L~~L~L~~N-~i~~~-~~--l 168 (263)
T 1xeu_A 107 CLSRLFLDN-NELRDT-DS--LIHLKNLEILSIRNNK-LKSIV-MLGF--------LSKLEVLDLHGN-EITNT-GG--L 168 (263)
T ss_dssp SCCEEECCS-SCCSBS-GG--GTTCTTCCEEECTTSC-CCBCG-GGGG--------CTTCCEEECTTS-CCCBC-TT--S
T ss_pred cccEEEccC-CccCCC-hh--hcCcccccEEECCCCc-CCCCh-HHcc--------CCCCCEEECCCC-cCcch-HH--h
Confidence 999999999 488884 53 6899999999999886 88876 3333 899999999986 67777 22 3
Q ss_pred CCCCcccEEEeecCcccccccccc
Q 038022 356 SEWPALEILLVCGCDKLKIIAADL 379 (402)
Q Consensus 356 ~~l~~L~~L~l~~c~~l~~lp~~~ 379 (402)
..+++|+.|++++++ +...|...
T Consensus 169 ~~l~~L~~L~l~~N~-~~~~~~~~ 191 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK-CVNEPVKY 191 (263)
T ss_dssp TTCCCCCEEEEEEEE-EECCCEEC
T ss_pred ccCCCCCEEeCCCCc-ccCCcccc
Confidence 688999999999876 55556543
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=6.5e-12 Score=119.00 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=108.2
Q ss_pred CCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 323 (402)
..++.|+|++|.+++ +|...+. .+++|++|+|++ ++++.+.|.. ++++++|++|++++|. ++.++...
T Consensus 39 ~~l~~L~Ls~N~l~~------l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~-- 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSR------LRAEWTPTRLTNLHSLLLSH-NHLNFISSEA-FVPVPNLRYLDLSSNH-LHTLDEFL-- 107 (361)
T ss_dssp TTCSEEECCSSCCCE------ECTTSSSSCCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTT--
T ss_pred CCCCEEECCCCCCCc------cChhhhhhcccccCEEECCC-CcCCccChhh-ccCCCCCCEEECCCCc-CCcCCHHH--
Confidence 358999999999997 7776676 899999999999 6999965555 7899999999999986 88887642
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc----CCCCcCCcCCCCCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL----SQNNENDQLGIPAQQP 395 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~~~~l~~~~~~~~~~ 395 (402)
+..+++|+.|+|+++ ++..+++.. ...+++|+.|++++|. +..+|..+ +.+..|+.+++++++-
T Consensus 108 -----~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 108 -----FSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp -----TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred -----hCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 122899999999986 788886653 3789999999999965 89999876 6788999999988753
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=8e-13 Score=108.70 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=104.0
Q ss_pred CCCCCCEEeecCcccc-cccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-cccc
Q 038022 243 ALPNLEALEISDINVD-KIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISE 320 (402)
Q Consensus 243 ~l~~L~~L~l~~~~~~-~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~ 320 (402)
..++|+.|++++|.++ + .+|. .++.+++|++|++++| .++++ .. ++.+++|++|++++|. +.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~~-----~~~~-~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~n~-i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEG-----KLEG-LTDEFEELEFLSTINV-GLTSI--AN-LPKLNKLKKLELSDNR-VSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTT-----BCCS-CCTTCTTCCEEECTTS-CCCCC--TT-CCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred CCccCeEEEccCCcCChh-----HHHH-HHhhcCCCcEEECcCC-CCCCc--hh-hhcCCCCCEEECCCCc-ccchHHHH
Confidence 4478999999999998 4 4887 4899999999999995 89885 33 7899999999999996 666 7765
Q ss_pred cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc----ccCCCCcCCcCCCC
Q 038022 321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA----DLSQNNENDQLGIP 391 (402)
Q Consensus 321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~l~~~~~~ 391 (402)
.+. +++|++|+++++ .++.++.......+++|++|++++|+ +..+|. .++.+..|+.++++
T Consensus 84 ~~~--------l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEK--------CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHH--------CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhh--------CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 544 899999999987 68876521123789999999999986 788876 67888888888775
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=1.9e-12 Score=133.64 Aligned_cols=120 Identities=24% Similarity=0.186 Sum_probs=99.2
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
+..+..+++|+.|+|++|.+.. +|.. +..+++|++|+|++ |.++. +|.+ +++|++|++|+|++|. ++.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~------l~~~-~~~l~~L~~L~Ls~-N~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN------ISAN-IFKYDFLTRLYLNG-NSLTE-LPAE-IKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC------CCGG-GGGCCSCSCCBCTT-SCCSC-CCGG-GGGGTTCCEEECTTSC-CSSC
T ss_pred hhhhccCCCCcEEECCCCCCCC------CChh-hcCCCCCCEEEeeC-CcCcc-cChh-hhCCCCCCEEeCcCCc-CCcc
Confidence 5678899999999999999985 8986 77899999999999 58986 6877 7899999999999986 8899
Q ss_pred ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc
Q 038022 318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL 379 (402)
Q Consensus 318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 379 (402)
|..++. +++|++|+|+++ .++.+|..+ +++++|++|+|++|+..+.+|..+
T Consensus 286 p~~~~~--------l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 286 PAELGS--------CFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSGGG--------GTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ChhhcC--------CCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCccCCCChHHH
Confidence 987776 999999999986 788998875 889999999999988555555544
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=1e-12 Score=111.35 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=27.9
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
+|++|++++|.+++ ++ .++.+++|++|++++ +.++++ |..+++.+++|++|++++|. ++.+|
T Consensus 43 ~L~~L~Ls~N~l~~------~~--~l~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK------LD--GFPLLRRLKTLLVNN-NRICRI-GEGLDQALPDLTELILTNNS-LVELG 104 (176)
T ss_dssp CCSEEECCSSCCCE------EC--CCCCCSSCCEEECCS-SCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGG
T ss_pred CCCEEECCCCCCCc------cc--ccccCCCCCEEECCC-Cccccc-CcchhhcCCCCCEEECCCCc-CCcch
Confidence 45555555555443 32 144444555555554 244442 32223445555555555443 44444
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.30 E-value=2.2e-11 Score=118.96 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=115.3
Q ss_pred hhhhccccccccCCCccc-cccCCce-EEcccccccc--ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022 205 ALRKCNAISLRNNKESTT-MYSSSEI-TLDISTLLFN--EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280 (402)
Q Consensus 205 ~~~~~~~l~l~~~~~~~~-~~~~~~L-~L~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L 280 (402)
....++.+.+.+|.+.++ +..+++| .|+++++... .++.+++|++|++++|.+++ +| ++.+++|++|
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~------l~---l~~l~~L~~L 153 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE------ID---VSHNTQLTEL 153 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC------CC---CTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccce------ec---cccCCcCCEE
Confidence 346788888888887776 4555666 7777774321 26788888888888888875 53 6778888888
Q ss_pred EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022 281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA 360 (402)
Q Consensus 281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~ 360 (402)
++++|..+..+ + ++.+++|++|++++|. ++.+| ... +++|+.|+++++ +++.++ .+.+++
T Consensus 154 ~l~~n~~~~~~-~---~~~l~~L~~L~ls~n~-l~~l~--l~~--------l~~L~~L~l~~N-~l~~~~----l~~l~~ 213 (457)
T 3bz5_A 154 DCHLNKKITKL-D---VTPQTQLTTLDCSFNK-ITELD--VSQ--------NKLLNRLNCDTN-NITKLD----LNQNIQ 213 (457)
T ss_dssp ECTTCSCCCCC-C---CTTCTTCCEEECCSSC-CCCCC--CTT--------CTTCCEEECCSS-CCSCCC----CTTCTT
T ss_pred ECCCCCccccc-c---cccCCcCCEEECCCCc-cceec--ccc--------CCCCCEEECcCC-cCCeec----cccCCC
Confidence 88886555553 3 5678888888888875 77766 333 788888888875 577663 267788
Q ss_pred ccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 361 LEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 361 L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
|+.|++++|. ++.+| ++.+..|+.+++++++
T Consensus 214 L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 214 LTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence 8888888865 67777 7777888888887765
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=1.9e-11 Score=110.45 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=98.3
Q ss_pred hhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022 206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~ 279 (402)
...+..+.+..+.+..+ +.++++| .|+++++- .+.+..+++|++|++++|.+++ +|. +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~------~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD------LSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC------CGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC------Chh--hccCCCCCE
Confidence 34455555666665554 3334444 56666522 1256677777777777777775 665 677777777
Q ss_pred EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP 359 (402)
Q Consensus 280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~ 359 (402)
|++++ +.++++ |. +.. ++|++|++++|. ++.++. ... +++|+.|+++++ +++.++. ...++
T Consensus 90 L~L~~-N~l~~l-~~--~~~-~~L~~L~L~~N~-l~~~~~-l~~--------l~~L~~L~Ls~N-~i~~~~~---l~~l~ 150 (263)
T 1xeu_A 90 LSVNR-NRLKNL-NG--IPS-ACLSRLFLDNNE-LRDTDS-LIH--------LKNLEILSIRNN-KLKSIVM---LGFLS 150 (263)
T ss_dssp EECCS-SCCSCC-TT--CCC-SSCCEEECCSSC-CSBSGG-GTT--------CTTCCEEECTTS-CCCBCGG---GGGCT
T ss_pred EECCC-CccCCc-Cc--ccc-CcccEEEccCCc-cCCChh-hcC--------cccccEEECCCC-cCCCChH---HccCC
Confidence 77777 467763 43 223 777777777774 666542 222 777777777765 5666652 25677
Q ss_pred cccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
+|+.|++++|. +..+ ..+..+..|+.++++++
T Consensus 151 ~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 151 KLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred CCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence 77777777755 5555 55666666666666554
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=3.3e-12 Score=128.84 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=121.7
Q ss_pred hccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022 208 KCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV 281 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~ 281 (402)
.+.++.+..+.+..+ ...++.| .|+++++. .+.+..+++|+.|+|++|.+.+ +|. +..+++|++|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~------~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD------IKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC------CGG--GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC------Chh--hccCCCCCEEE
Confidence 344445555555444 2233333 55665522 2468899999999999999986 776 89999999999
Q ss_pred EeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc
Q 038022 282 VWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL 361 (402)
Q Consensus 282 L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L 361 (402)
|++| .+.+ +| . ++.+++|++|+|++|. +..++. ... +++|+.|+|++| .+..++ .+..+++|
T Consensus 94 Ls~N-~l~~-l~-~-l~~l~~L~~L~Ls~N~-l~~l~~-l~~--------l~~L~~L~Ls~N-~l~~l~---~l~~l~~L 155 (605)
T 1m9s_A 94 LDEN-KIKD-LS-S-LKDLKKLKSLSLEHNG-ISDING-LVH--------LPQLESLYLGNN-KITDIT---VLSRLTKL 155 (605)
T ss_dssp CCSS-CCCC-CT-T-STTCTTCCEEECTTSC-CCCCGG-GGG--------CTTCSEEECCSS-CCCCCG---GGGSCTTC
T ss_pred CcCC-CCCC-Ch-h-hccCCCCCEEEecCCC-CCCCcc-ccC--------CCccCEEECCCC-ccCCch---hhcccCCC
Confidence 9995 8988 45 3 7899999999999986 777653 333 999999999987 677773 23789999
Q ss_pred cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 362 EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 362 ~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+.|+|++|. +..+++ ++.+..|+.+++++++
T Consensus 156 ~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 156 DTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp SEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECcCCc-CCCchh-hccCCCCCEEECcCCC
Confidence 999999986 777776 8999999999998874
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=2.4e-11 Score=119.18 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=54.6
Q ss_pred cCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeC
Q 038022 271 FPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLY 350 (402)
Q Consensus 271 i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~ 350 (402)
+..+++|++|++++| .++++ +. ++.+++|++|++++|. +..++. .. .+++|+.|++++| ++..++
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~-~~--------~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLEDI-SP--ISNLKNLTYLTLYFNN-ISDISP-VS--------SLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSCC-GG--GGGCTTCSEEECCSSC-CSCCGG-GG--------GCTTCCEEECCSS-CCCCCG
T ss_pred ccCCCccCeEEcCCC-cccCc-hh--hcCCCCCCEEECcCCc-CCCchh-hc--------cCccCCEeECCCC-ccCCch
Confidence 444455555555552 44442 22 3455555555555553 333332 11 2666666666665 455553
Q ss_pred CCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 351 PGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 351 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
. ..++++|+.|++++|. +..+++ +..+..|+.++++++
T Consensus 348 ~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 348 S---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp G---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred h---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence 1 2566777777777665 333433 666666766666655
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.28 E-value=2.5e-11 Score=119.02 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=88.9
Q ss_pred hhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022 206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~ 279 (402)
...++.+.+.+|.+... +..+++| .|+++++.. +.+..+++|++|++++|.+.+ ++. +..+++|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN------LAP--LSGLTKLTE 269 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CGG--GTTCTTCSE
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc------chh--hhcCCCCCE
Confidence 45566666666665554 2334444 555555221 345566666666666666654 443 556666666
Q ss_pred EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP 359 (402)
Q Consensus 280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~ 359 (402)
|++++| .++++ |. ++.+++|++|++++|. ++.++. ... +++|+.|++++| ++.++++ ...++
T Consensus 270 L~l~~n-~l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~--------l~~L~~L~L~~n-~l~~~~~---~~~l~ 331 (466)
T 1o6v_A 270 LKLGAN-QISNI-SP--LAGLTALTNLELNENQ-LEDISP-ISN--------LKNLTYLTLYFN-NISDISP---VSSLT 331 (466)
T ss_dssp EECCSS-CCCCC-GG--GTTCTTCSEEECCSSC-CSCCGG-GGG--------CTTCSEEECCSS-CCSCCGG---GGGCT
T ss_pred EECCCC-ccCcc-cc--ccCCCccCeEEcCCCc-ccCchh-hcC--------CCCCCEEECcCC-cCCCchh---hccCc
Confidence 666663 56553 32 3566666666666654 555443 222 666666666665 4444443 14566
Q ss_pred cccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+|+.|++++|. +..+| .++.+..|+.+++++++
T Consensus 332 ~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 332 KLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp TCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 66666666653 45553 45556666666665543
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.27 E-value=2.4e-11 Score=118.60 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=61.9
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE 320 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~ 320 (402)
++++++|++|++++|.+++ +|.. + .+|++|++++ +.+++ +| + ++++++|++|++++|. ++.+|..
T Consensus 149 ~~~l~~L~~L~l~~N~l~~------lp~~-~---~~L~~L~L~~-n~l~~-l~-~-~~~l~~L~~L~l~~N~-l~~l~~~ 213 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK------LPDL-P---PSLEFIAAGN-NQLEE-LP-E-LQNLPFLTAIYADNNS-LKKLPDL 213 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC------CCCC-C---TTCCEEECCS-SCCSS-CC-C-CTTCTTCCEEECCSSC-CSSCCCC
T ss_pred cCCCCCCCEEECCCCcCcc------cCCC-c---ccccEEECcC-CcCCc-Cc-c-ccCCCCCCEEECCCCc-CCcCCCC
Confidence 4455555555555555443 4432 1 2455555555 24554 24 2 4555555555555553 4444432
Q ss_pred cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022 321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
.++|++|+++++ .++.+|. . +.+++|++|++++|. ++.+|... ..|+.++++++
T Consensus 214 -----------~~~L~~L~l~~n-~l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~N 267 (454)
T 1jl5_A 214 -----------PLSLESIVAGNN-ILEELPE-L--QNLPFLTTIYADNNL-LKTLPDLP---PSLEALNVRDN 267 (454)
T ss_dssp -----------CTTCCEEECCSS-CCSSCCC-C--TTCTTCCEEECCSSC-CSSCCSCC---TTCCEEECCSS
T ss_pred -----------cCcccEEECcCC-cCCcccc-c--CCCCCCCEEECCCCc-CCcccccc---cccCEEECCCC
Confidence 346666666665 5556653 2 566777777777654 56666543 34444444444
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=3.3e-12 Score=108.17 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=103.7
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCC-CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ-SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~-~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
.+.++.+|+.|++++|.++. +|. +..+. +|++|++++ +.++++ + . ++.+++|++|++++|. ++.+|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~------i~~--~~~~~~~L~~L~Ls~-N~l~~~-~-~-l~~l~~L~~L~Ls~N~-l~~~~ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV------IEN--LGATLDQFDAIDFSD-NEIRKL-D-G-FPLLRRLKTLLVNNNR-ICRIG 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS------CCC--GGGGTTCCSEEECCS-SCCCEE-C-C-CCCCSSCCEEECCSSC-CCEEC
T ss_pred hcCCcCCceEEEeeCCCCch------hHH--hhhcCCCCCEEECCC-CCCCcc-c-c-cccCCCCCEEECCCCc-ccccC
Confidence 45678899999999999985 765 55554 999999999 588885 3 3 6889999999999885 88887
Q ss_pred ccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc----cCCCCcCCcCCCCCC
Q 038022 319 SEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD----LSQNNENDQLGIPAQ 393 (402)
Q Consensus 319 ~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~~~~l~~~~~~~~ 393 (402)
... .. +++|++|+++++ .++.++.......+++|+.|++++|+ +..+|.. ++.+..|+.++++.+
T Consensus 81 ~~~~~~--------l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 81 EGLDQA--------LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCHHHH--------CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cchhhc--------CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 654 43 899999999986 67887751123678999999999987 6788885 888888888888765
Q ss_pred C
Q 038022 394 Q 394 (402)
Q Consensus 394 ~ 394 (402)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=1.3e-12 Score=122.36 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=60.3
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc-cchHHHhcCCccCeeeeeccccccc-
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI-FVASMIGSLKQLQHLDIRFCEDLQE- 316 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~-~p~~~i~~l~~L~~L~l~~~~~l~~- 316 (402)
..+..+++|++|++++|.+++ ..|. .++.+++|++|++++|..+++. +|.. ++++++|++|++++|..++.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~-----~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSD-----PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCH-----HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH
T ss_pred HHHhhCCCCCEEeCcCcccCH-----HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH
Confidence 334455555555555554443 2333 2444555555555554344431 2222 34455555555555522332
Q ss_pred -ccccccccccccccccc-ccceeeccccc-cc--ceeCCCCCCCCCCcccEEEeecCccc-cccccccCCCCcCCcCCC
Q 038022 317 -IISENRADQVIPYFVFP-QLTTLILQDLP-KL--RCLYPGMHTSEWPALEILLVCGCDKL-KIIAADLSQNNENDQLGI 390 (402)
Q Consensus 317 -lp~~~~~~~~~~~~~l~-~L~~L~L~~~~-~L--~~l~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~l~~~~~ 390 (402)
++..... ++ +|++|++++|. .+ ..++... .++++|++|++++|..+ ...|..++.+..|+.+++
T Consensus 185 ~~~~~~~~--------l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 185 HVQVAVAH--------VSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp HHHHHHHH--------SCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred HHHHHHHh--------cccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 2322222 44 55555555543 22 1222211 33455555555555422 234444455555555555
Q ss_pred CCC
Q 038022 391 PAQ 393 (402)
Q Consensus 391 ~~~ 393 (402)
+++
T Consensus 255 ~~~ 257 (336)
T 2ast_B 255 SRC 257 (336)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 107
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.25 E-value=6.7e-12 Score=124.75 Aligned_cols=121 Identities=24% Similarity=0.209 Sum_probs=85.7
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE- 316 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~- 316 (402)
+..+.++++|++|++++|.+++ +++..|+.+++|++|++++ +.++. +|.. .+++|++|++++|. +..
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~-lp~~---~l~~L~~L~L~~N~-l~~~ 105 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSH-NKLVK-ISCH---PTVNLKHLDLSFNA-FDAL 105 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCS-SCCCE-EECC---CCCCCSEEECCSSC-CSSC
T ss_pred hhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCC-Cceee-cCcc---ccCCccEEeccCCc-cccc
Confidence 3567888888888888888876 5333588888888888888 57887 4653 78888888888876 554
Q ss_pred -cccccccccccccccccccceeecccccccceeCCCCCCCCCCcc--cEEEeecCcc--ccccccccCCCC
Q 038022 317 -IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL--EILLVCGCDK--LKIIAADLSQNN 383 (402)
Q Consensus 317 -lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L--~~L~l~~c~~--l~~lp~~~~~~~ 383 (402)
+|...+. +++|++|+++++ .+.... ...+++| +.|++++|.. ....|..++.+.
T Consensus 106 ~~p~~~~~--------l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 106 PICKEFGN--------MSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCGGGGG--------CTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred cchhhhcc--------CCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence 4555555 888888888875 454421 2456666 8888888775 566677766654
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3.2e-11 Score=103.63 Aligned_cols=106 Identities=22% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCCEEeecCcccccccccCCCCC-cccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPA-AVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
+|++|++++|.+++ +|. ..++.+++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.++.. ...
T Consensus 30 ~l~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLLNDNELGR------ISSDGLFGRLPHLVKLELKR-NQLTGIEPNA-FEGASHIQELQLGENK-IKEISNKMFLG 100 (192)
T ss_dssp TCSEEECCSCCCCS------BCCSCSGGGCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEEECCSCC-CCEECSSSSTT
T ss_pred CCCEEECCCCcCCc------cCCccccccCCCCCEEECCC-CCCCCcCHhH-cCCcccCCEEECCCCc-CCccCHHHhcC
Confidence 67788888887775 554 2367777888888877 5777755555 6777888888887775 6666543 222
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+++|++|+++++ +++.+++.. ...+++|++|++++++
T Consensus 101 --------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 --------LHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp --------CTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred --------CCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 777888888775 566665432 2567778888877765
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.24 E-value=5.1e-11 Score=120.39 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=57.6
Q ss_pred CccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccC
Q 038022 301 KQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLS 380 (402)
Q Consensus 301 ~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 380 (402)
++|++|++++|. ++.+|.. +++|+.|+++++ +++.+|. .+++|+.|++++|. ++.+|..++
T Consensus 221 ~~L~~L~Ls~N~-L~~lp~~-----------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~~l~ 281 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPESLI 281 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCCGGGG
T ss_pred CCCCEEEccCCc-cCcCCCC-----------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCCHHHh
Confidence 566666776663 6666522 778888888876 6777765 45789999999875 789999999
Q ss_pred CCCcCCcCCCCCCC
Q 038022 381 QNNENDQLGIPAQQ 394 (402)
Q Consensus 381 ~~~~l~~~~~~~~~ 394 (402)
++..|+.++++++.
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 99999999998875
No 110
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.24 E-value=7.2e-12 Score=125.30 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=109.0
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
++|++|++++|.+++ ++...++.+++|++|++++ +.++++.|.. ++++++|++|++++|. +..+|.. .+.
T Consensus 26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKS-SRINTIEGDA-FYSLGSLEHLDLSDNH-LSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred CCccEEECcCCccCc------cChhhhhcCCcccEEECCC-CCcCccChhh-ccccccCCEEECCCCc-cCccCHHHhcc
Confidence 689999999999987 5544599999999999999 5899965555 7899999999999996 7777764 444
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~ 394 (402)
+++|++|+++++ .++.++.....+++++|++|++++|..++.+|. .++.+..|+.+++++++
T Consensus 97 --------l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 97 --------LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp --------CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred --------CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 999999999987 677553222337899999999999988888884 78999999998887654
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=2.8e-11 Score=124.21 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=120.3
Q ss_pred ccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 211 AISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 211 ~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
.++.++++++.+.... +++ .||++++ .+..|.++++|++|++++|.+.+ +++..++.+++|++|+++
T Consensus 8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCTTCCEEECC
T ss_pred eeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhcccCcCEEECC
Confidence 4555556666553322 234 7777763 34568899999999999999986 544468999999999999
Q ss_pred ccCCCccccchHHHhcCCccCeeeeecccccccccc-ccccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE 362 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~ 362 (402)
+ +.++.+ |...++++++|++|++++|. +..+|. ..+. +++|++|+++++ .+..+++.. .+++++|+
T Consensus 82 ~-n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~ 148 (680)
T 1ziw_A 82 H-NELSQL-SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK--------QKNLITLDLSHN-GLSSTKLGT-QVQLENLQ 148 (680)
T ss_dssp S-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT--------CTTCCEEECCSS-CCSCCCCCS-SSCCTTCC
T ss_pred C-CccCcc-ChhhhccCCCCCEEECCCCc-cCccChhHccc--------cCCCCEEECCCC-cccccCchh-hcccccCC
Confidence 9 488885 54337899999999999886 777764 3343 899999999987 566665543 26899999
Q ss_pred EEEeecCcccccccc-ccC--CCCcCCcCCCCCCC
Q 038022 363 ILLVCGCDKLKIIAA-DLS--QNNENDQLGIPAQQ 394 (402)
Q Consensus 363 ~L~l~~c~~l~~lp~-~~~--~~~~l~~~~~~~~~ 394 (402)
+|++++|. ++.+|. .++ ....|+.+++++++
T Consensus 149 ~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 149 ELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp EEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred EEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 99999976 565554 333 45788888887764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=3.2e-11 Score=120.47 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=104.1
Q ss_pred hhccccccccCCCccccccCCce-EEccccccccc---cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEE
Q 038022 207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNE---KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV 282 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L 282 (402)
..++.+++.+|++..+...+++| .|+++++.... +.+ +|++|++++|.+++ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~------lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM------LPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC------CCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC------CCC----cCccccEEeC
Confidence 56778888888777654334445 67776633222 333 78888888888875 675 4677888888
Q ss_pred eccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc-
Q 038022 283 WYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL- 361 (402)
Q Consensus 283 ~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L- 361 (402)
++ |.+++ +|. .+++|++|++++|. ++.+|. + .++|+.|+|+++ +++.+|. + .. +|
T Consensus 148 s~-N~l~~-lp~----~l~~L~~L~Ls~N~-L~~lp~-l----------~~~L~~L~Ls~N-~L~~lp~-~--~~--~L~ 203 (571)
T 3cvr_A 148 DN-NQLTM-LPE----LPTSLEVLSVRNNQ-LTFLPE-L----------PESLEALDVSTN-LLESLPA-V--PV--RNH 203 (571)
T ss_dssp CS-SCCSC-CCC----CCTTCCEEECCSSC-CSCCCC-C----------CTTCCEEECCSS-CCSSCCC-C--C------
T ss_pred CC-CccCc-CCC----cCCCcCEEECCCCC-CCCcch-h----------hCCCCEEECcCC-CCCchhh-H--HH--hhh
Confidence 87 57777 454 46788888888775 666665 1 367888888875 6777776 3 22 55
Q ss_pred ------cEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022 362 ------EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 362 ------~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
+.|++++|. ++.+|..+..+..|+.+++++|+-
T Consensus 204 ~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 204 HSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ----CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred cccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcC
Confidence 888888764 778888888888888888877753
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=4.6e-11 Score=101.07 Aligned_cols=110 Identities=18% Similarity=0.261 Sum_probs=87.7
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~ 323 (402)
++|++|++++|.+++ +|...++.+++|++|++++ +.++.+ |...++.+++|++|++++|. ++.+|... ..
T Consensus 28 ~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSQ-NQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDK 98 (177)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeCCCcccE------eCHHHhcCcccccEEECCC-CcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence 688999999999886 7776678899999999998 588885 54446889999999999885 77777642 33
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK 373 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 373 (402)
+++|++|+++++ .++.++... ...+++|++|++++++-..
T Consensus 99 --------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 99 --------LTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp --------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCC
T ss_pred --------CcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCCeec
Confidence 889999999986 788888754 2578999999999887433
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=5.3e-11 Score=102.24 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=103.6
Q ss_pred CEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccc
Q 038022 248 EALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQV 326 (402)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~ 326 (402)
++++++++.++. +|.. +.. +|++|++++ +.++++.+...++.+++|++|++++|. ++.+ |.....
T Consensus 11 ~~l~~s~~~l~~------ip~~-~~~--~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE------IPRD-IPL--HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG--- 76 (192)
T ss_dssp TEEECTTSCCSS------CCSC-CCT--TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT---
T ss_pred CEEEcCCCCcCc------CccC-CCC--CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC---
Confidence 789999999985 8985 543 899999999 689986554447899999999999986 7776 444444
Q ss_pred cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
+++|++|+|+++ +++.++... ..++++|++|+++++.--...|..++.+..|+.++++++.
T Consensus 77 -----l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 -----ASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----CTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----cccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999999999986 799888763 3689999999999987545558889999999999998875
No 115
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=2.8e-11 Score=121.45 Aligned_cols=148 Identities=21% Similarity=0.203 Sum_probs=83.4
Q ss_pred cccccccCCCccccccC-Cce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEE
Q 038022 210 NAISLRNNKESTTMYSS-SEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV 282 (402)
Q Consensus 210 ~~l~l~~~~~~~~~~~~-~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L 282 (402)
+++++.+++++.+.... +++ .||+++ ..+..+.++++|++|++++|.+++ ++...|+.+++|++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCCCCCEEEC
Confidence 55666666555542111 122 334333 123466777777777777777765 43334677777777777
Q ss_pred eccCCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022 283 WYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA 360 (402)
Q Consensus 283 ~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~ 360 (402)
++ +.++. +|.. .+++|++|++++|. ++.+| ...+. +++|++|+++++ +++... ...+++
T Consensus 108 s~-N~l~~-lp~~---~l~~L~~L~Ls~N~-l~~l~~p~~~~~--------l~~L~~L~L~~n-~l~~~~----~~~l~~ 168 (562)
T 3a79_B 108 SH-NRLQN-ISCC---PMASLRHLDLSFND-FDVLPVCKEFGN--------LTKLTFLGLSAA-KFRQLD----LLPVAH 168 (562)
T ss_dssp TT-SCCCE-ECSC---CCTTCSEEECCSSC-CSBCCCCGGGGG--------CTTCCEEEEECS-BCCTTT----TGGGTT
T ss_pred CC-CcCCc-cCcc---ccccCCEEECCCCC-ccccCchHhhcc--------cCcccEEecCCC-ccccCc----hhhhhh
Confidence 77 46766 3543 67777777777765 55543 33333 677777777764 444321 133444
Q ss_pred c--cEEEeecCcc--ccccccccCCC
Q 038022 361 L--EILLVCGCDK--LKIIAADLSQN 382 (402)
Q Consensus 361 L--~~L~l~~c~~--l~~lp~~~~~~ 382 (402)
| +.|++++|.. ....|..+..+
T Consensus 169 L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 169 LHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp SCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred ceeeEEEeecccccccccCccccccc
Confidence 4 7777777654 34455555443
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=7.7e-11 Score=101.30 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
++|++|++++|.++. +|. .+..+++|++|+|++ +.++.+.|.. +.++++|++|++++|. ++.++.. ...
T Consensus 31 ~~l~~L~L~~n~i~~------ip~-~~~~l~~L~~L~Ls~-N~i~~i~~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~f~~ 100 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL------VPK-ELSNYKHLTLIDLSN-NRISTLSNQS-FSNMTQLLTLILSYNR-LRCIPPRTFDG 100 (193)
T ss_dssp TTCCEEECCSSCCCS------CCG-GGGGCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTT
T ss_pred CCCCEEECCCCcCch------hHH-HhhcccCCCEEECCC-CcCCEeCHhH-ccCCCCCCEEECCCCc-cCEeCHHHhCC
Confidence 467888888888774 775 477788888888887 5777754444 6778888888888775 6666653 222
Q ss_pred ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+++|+.|+|+++ .++.++.... ..+++|+.|++++++
T Consensus 101 --------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 101 --------LKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp --------CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred --------CCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCCC
Confidence 778888888874 6777776532 567788888887654
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=7e-11 Score=111.35 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=126.8
Q ss_pred ccccccCCCccccccCC-ce-EEccccc----cc-cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022 211 AISLRNNKESTTMYSSS-EI-TLDISTL----LF-NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW 283 (402)
Q Consensus 211 ~l~l~~~~~~~~~~~~~-~L-~L~l~~~----~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~ 283 (402)
.+...+++++.+..+.+ .+ .|+++++ +| ..|.++++|++|+|++|.+.+ .+|...|..+++|+.+...
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----VIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----EECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----ccChhHhhcchhhhhhhcc
Confidence 34445556665533322 23 6777762 33 468999999999999999865 4777778999998887666
Q ss_pred ccCCCccccchHHHhcCCccCeeeeeccccccccccccccc---------------cccc---cccc-cccceeeccccc
Q 038022 284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD---------------QVIP---YFVF-PQLTTLILQDLP 344 (402)
Q Consensus 284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~---------------~~~~---~~~l-~~L~~L~L~~~~ 344 (402)
++++++.+.|.. ++.+++|++|++++|. +..+|...... ..++ +..+ ..++.|+++++
T Consensus 88 ~~N~l~~l~~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 88 KANNLLYINPEA-FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp EETTCCEECTTS-BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cCCcccccCchh-hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-
Confidence 668999965554 7899999999999886 77776532210 0011 1112 35777888874
Q ss_pred ccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022 345 KLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP 395 (402)
Q Consensus 345 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~ 395 (402)
+++.++... ...++|++|++++++.++.+|.+ ++.+..|+.+++++++-
T Consensus 165 ~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 165 GIQEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CCCEECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred cccCCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 788888766 56789999999999999999985 58889999999988863
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=9.7e-11 Score=114.33 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=71.6
Q ss_pred hhccccccccCCCccccccCCce-EEccccccccccCCC-CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022 207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEKVAL-PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY 284 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~ 284 (402)
..++.+.+.+|.++++....+++ .|+++++....+..+ ++|++|++++|.+++ +|. ++.+++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~------lp~--~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK------LPE--LQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS------CCC--CTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC------Ccc--cCCCCCCCEEECCC
Confidence 34555555555554432222333 444444433333333 355555555555543 452 55555555555555
Q ss_pred cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
+++++ +|.. ..+|++|++++|. ++.+| ..+. +++|++|+++++ .++.+|.. .++|++|
T Consensus 163 -N~l~~-lp~~----~~~L~~L~L~~n~-l~~l~-~~~~--------l~~L~~L~l~~N-~l~~l~~~-----~~~L~~L 220 (454)
T 1jl5_A 163 -NSLKK-LPDL----PPSLEFIAAGNNQ-LEELP-ELQN--------LPFLTAIYADNN-SLKKLPDL-----PLSLESI 220 (454)
T ss_dssp -SCCSC-CCCC----CTTCCEEECCSSC-CSSCC-CCTT--------CTTCCEEECCSS-CCSSCCCC-----CTTCCEE
T ss_pred -CcCcc-cCCC----cccccEEECcCCc-CCcCc-cccC--------CCCCCEEECCCC-cCCcCCCC-----cCcccEE
Confidence 24554 2321 2355555555553 44444 2222 555555555543 34444321 1355555
Q ss_pred EeecCccccccccccCCCCcCCcCCCCCC
Q 038022 365 LVCGCDKLKIIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 365 ~l~~c~~l~~lp~~~~~~~~l~~~~~~~~ 393 (402)
++++|. ++.+|. ++.+..|+.++++++
T Consensus 221 ~l~~n~-l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 221 VAGNNI-LEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp ECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred ECcCCc-CCcccc-cCCCCCCCEEECCCC
Confidence 555543 445552 555555555555444
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=3.4e-11 Score=120.68 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=83.7
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ 325 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 325 (402)
.|++|++++|.+++ +|. ++.+++|++|+|++ |.++. +|.+ ++++++|++|++++|. ++.+| ..+.
T Consensus 442 ~L~~L~Ls~n~l~~------lp~--~~~l~~L~~L~Ls~-N~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~~lp-~l~~-- 506 (567)
T 1dce_A 442 DVRVLHLAHKDLTV------LCH--LEQLLLVTHLDLSH-NRLRA-LPPA-LAALRCLEVLQASDNA-LENVD-GVAN-- 506 (567)
T ss_dssp TCSEEECTTSCCSS------CCC--GGGGTTCCEEECCS-SCCCC-CCGG-GGGCTTCCEEECCSSC-CCCCG-GGTT--
T ss_pred CceEEEecCCCCCC------CcC--ccccccCcEeecCc-ccccc-cchh-hhcCCCCCEEECCCCC-CCCCc-ccCC--
Confidence 47788888888875 775 78888888888888 57886 5766 6888888888888875 77777 4444
Q ss_pred ccccccccccceeeccccccccee--CCCCCCCCCCcccEEEeecCccccccccccCC
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCL--YPGMHTSEWPALEILLVCGCDKLKIIAADLSQ 381 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 381 (402)
+++|+.|+|+++ +++.+ |..+ +.+++|+.|++++|+ +..+|..+..
T Consensus 507 ------l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~~~~~~ 554 (567)
T 1dce_A 507 ------LPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEEGIQER 554 (567)
T ss_dssp ------CSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSSSCTTH
T ss_pred ------CCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCccHHHH
Confidence 888888888875 67777 4433 678888888888866 7777765543
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=1.2e-10 Score=116.27 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=114.8
Q ss_pred hccccccccCCCccccc-cCCce-EEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022 208 KCNAISLRNNKESTTMY-SSSEI-TLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY 284 (402)
Q Consensus 208 ~~~~l~l~~~~~~~~~~-~~~~L-~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~ 284 (402)
+++.+++.+|++.++.. -.++| .|+++++....+ ..+++|++|++++|.+++ +|. ++. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~------ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST------LPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC------CCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC------cch--hhc--CCCEEECCC
Confidence 67888898888887622 12445 788887433222 557899999999999986 887 554 899999999
Q ss_pred cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
|.+++ +|. .+++|++|++++|. ++.+|. . +++|++|+++++ +++.+|. + . ++|+.|
T Consensus 130 -N~l~~-lp~----~l~~L~~L~Ls~N~-l~~lp~---~--------l~~L~~L~Ls~N-~L~~lp~-l--~--~~L~~L 185 (571)
T 3cvr_A 130 -NQLTM-LPE----LPALLEYINADNNQ-LTMLPE---L--------PTSLEVLSVRNN-QLTFLPE-L--P--ESLEAL 185 (571)
T ss_dssp -SCCSC-CCC----CCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS-CCSCCCC-C--C--TTCCEE
T ss_pred -CcCCC-CCC----cCccccEEeCCCCc-cCcCCC---c--------CCCcCEEECCCC-CCCCcch-h--h--CCCCEE
Confidence 58998 465 57999999999886 888886 2 889999999986 6888887 3 3 899999
Q ss_pred EeecCccccccccccCCCCcC-------CcCCCCCCCC
Q 038022 365 LVCGCDKLKIIAADLSQNNEN-------DQLGIPAQQP 395 (402)
Q Consensus 365 ~l~~c~~l~~lp~~~~~~~~l-------~~~~~~~~~~ 395 (402)
++++|. ++.+|. +.. .| +.+++++|+-
T Consensus 186 ~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 186 DVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ECCSSC-CSSCCC-CC----------CCEEEECCSSCC
T ss_pred ECcCCC-CCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 999875 889999 655 66 7788877653
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=3.1e-11 Score=124.56 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=95.9
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
+|...+..+.+|+.|+|++ +.+.. +|.. +.++++|++|+|++|. ++.+|..++. +++|+.|+|+++ +
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~-n~l~~-l~~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~Ls~N-~ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN-LQIFN-ISAN-IFKYDFLTRLYLNGNS-LTELPAEIKN--------LSNLRVLDLSHN-R 281 (727)
T ss_dssp -------CCCCCCEEECTT-SCCSC-CCGG-GGGCCSCSCCBCTTSC-CSCCCGGGGG--------GTTCCEEECTTS-C
T ss_pred cChhhhccCCCCcEEECCC-CCCCC-CChh-hcCCCCCCEEEeeCCc-CcccChhhhC--------CCCCCEEeCcCC-c
Confidence 4444689999999999999 58887 5776 5799999999999996 8899987766 999999999986 6
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV 396 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~ 396 (402)
++.+|..+ +++++|++|+|++|. ++.+|.+++.+..|+.++++++.-.
T Consensus 282 l~~lp~~~--~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 282 LTSLPAEL--GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSSCCSSG--GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCccChhh--cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 88998765 789999999999975 8999999999999999999998743
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.4e-10 Score=99.61 Aligned_cols=107 Identities=18% Similarity=0.298 Sum_probs=87.5
Q ss_pred hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..++.+.+.+|.++. +|..+..+++|++|++++|.+++ +|...|..+++|++|+|++
T Consensus 30 ~~~l~~L~L~~n~i~~---------------ip~~~~~l~~L~~L~Ls~N~i~~------i~~~~f~~l~~L~~L~Ls~- 87 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL---------------VPKELSNYKHLTLIDLSNNRIST------LSNQSFSNMTQLLTLILSY- 87 (193)
T ss_dssp CTTCCEEECCSSCCCS---------------CCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred CCCCCEEECCCCcCch---------------hHHHhhcccCCCEEECCCCcCCE------eCHhHccCCCCCCEEECCC-
Confidence 4566777777666654 35678999999999999999996 7766799999999999999
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeeccccc
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLP 344 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~ 344 (402)
+.++.+.|.. ++++++|++|++++|. +..+|.. ... +++|+.|++++++
T Consensus 88 N~l~~i~~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRT-FDGLKSLRLLSLHGND-ISVVPEGAFND--------LSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTT--------CTTCCEEECCSSC
T ss_pred CccCEeCHHH-hCCCCCCCEEECCCCC-CCeeChhhhhc--------CccccEEEeCCCC
Confidence 6899965555 7899999999999986 8888874 233 8999999999763
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=7e-11 Score=118.36 Aligned_cols=115 Identities=22% Similarity=0.211 Sum_probs=93.4
Q ss_pred EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022 230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH 305 (402)
Q Consensus 230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~ 305 (402)
.|+++++ +|. ++.+++|++|++++|.++. +|.. ++.+++|++|+|++ |.+++ +| + ++++++|++
T Consensus 445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~------lp~~-~~~l~~L~~L~Ls~-N~l~~-lp-~-l~~l~~L~~ 512 (567)
T 1dce_A 445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA------LPPA-LAALRCLEVLQASD-NALEN-VD-G-VANLPRLQE 512 (567)
T ss_dssp EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC------CCGG-GGGCTTCCEEECCS-SCCCC-CG-G-GTTCSSCCE
T ss_pred EEEecCCCCCCCcC-ccccccCcEeecCcccccc------cchh-hhcCCCCCEEECCC-CCCCC-Cc-c-cCCCCCCcE
Confidence 4555542 344 8999999999999999985 9985 99999999999999 69999 57 5 799999999
Q ss_pred eeeecccccccc--ccccccccccccccccccceeecccccccceeCCCCC--CCCCCcccEEEe
Q 038022 306 LDIRFCEDLQEI--ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH--TSEWPALEILLV 366 (402)
Q Consensus 306 L~l~~~~~l~~l--p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~--~~~l~~L~~L~l 366 (402)
|++++|. ++.+ |..++. +++|+.|+|+++ .++.+|+... ...+|+|+.|++
T Consensus 513 L~Ls~N~-l~~~~~p~~l~~--------l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNR-LQQSAAIQPLVS--------CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSC-CCSSSTTGGGGG--------CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCC-CCCCCCcHHHhc--------CCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9999986 8887 776666 999999999986 6888876431 123788888853
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.1e-12 Score=113.37 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=102.5
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
|..+..+++|++|++++|.+++ +| . +..+++|++|++++| .++. +|.. ++.+++|++|++++|. ++.+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~------l~-~-~~~l~~L~~L~l~~n-~l~~-l~~~-~~~~~~L~~L~L~~N~-l~~l 108 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK------IS-S-LSGMENLRILSLGRN-LIKK-IENL-DAVADTLEELWISYNQ-IASL 108 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC------CC-C-HHHHTTCCEEEEEEE-EECS-CSSH-HHHHHHCSEEEEEEEE-CCCH
T ss_pred hHHHhcCCCCCEEECCCCCCcc------cc-c-cccCCCCCEEECCCC-Cccc-ccch-hhcCCcCCEEECcCCc-CCcC
Confidence 3478999999999999999986 88 3 899999999999995 8887 5765 6788999999999995 8888
Q ss_pred ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc----------cCCCCcCCc
Q 038022 318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD----------LSQNNENDQ 387 (402)
Q Consensus 318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----------~~~~~~l~~ 387 (402)
| .... +++|++|+++++ .++.++.......+++|++|++++|+--...|.. +..+..|+.
T Consensus 109 ~-~~~~--------l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 109 S-GIEK--------LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp H-HHHH--------HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred C-cccc--------CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 7 3333 899999999986 6777654112368899999999998844444432 666777777
Q ss_pred CC
Q 038022 388 LG 389 (402)
Q Consensus 388 ~~ 389 (402)
+|
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 66
No 125
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=1e-10 Score=123.14 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=121.9
Q ss_pred cccccCCCccccccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 212 ISLRNNKESTTMYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 212 l~l~~~~~~~~~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+..+.++++.+..-.+++ .||+++ ..+..|.++++|++|++++|...+ .+++..|+++++|++|+|++
T Consensus 9 ~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~~~~f~~L~~L~~L~Ls~- 82 (844)
T 3j0a_A 9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRNLPNLRILDLGS- 82 (844)
T ss_dssp EEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSSCTTCCEEECTT-
T ss_pred EEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-----ccCHHHhcCCCCCCEEECCC-
Confidence 444455666653322334 778776 346778999999999999996544 47554699999999999999
Q ss_pred CCCccccchHHHhcCCccCeeeeeccccccc-cccc--cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022 286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISE--NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE 362 (402)
Q Consensus 286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~--~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~ 362 (402)
+.+.++.|.. ++++++|++|++++|. +.. +|.. .+. +++|++|+++++ .+..++.....+++++|+
T Consensus 83 N~l~~~~p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~--------L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 83 SKIYFLHPDA-FQGLFHLFELRLYFCG-LSDAVLKDGYFRN--------LKALTRLDLSKN-QIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CCCCEECTTS-SCSCSSCCCEECTTCC-CSSCCSTTCCCSS--------CSSCCEEEEESC-CCCCCCCCGGGGTCSSCC
T ss_pred CcCcccCHhH-ccCCcccCEeeCcCCC-CCcccccCccccc--------cCCCCEEECCCC-cccccccchhHhhCCCCC
Confidence 5898876766 7899999999999986 544 4543 333 899999999986 576665433347899999
Q ss_pred EEEeecCccccccccccCCC--CcCCcCCCCCCC
Q 038022 363 ILLVCGCDKLKIIAADLSQN--NENDQLGIPAQQ 394 (402)
Q Consensus 363 ~L~l~~c~~l~~lp~~~~~~--~~l~~~~~~~~~ 394 (402)
+|++++|..-...|..++.+ ..|+.++++.+.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99999987555566677665 677777777664
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.8e-10 Score=96.19 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=102.7
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RAD 324 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~ 324 (402)
..+.++++++.+.. +|.. + .++|++|++++ ++++++ |...++.+++|++|++++|. ++.+|... ..
T Consensus 8 ~~~~l~~~~~~l~~------~p~~-~--~~~l~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~- 74 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS------VPTG-I--PSSATRLELES-NKLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK- 74 (177)
T ss_dssp ETTEEECCSSCCSS------CCTT-C--CTTCSEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-
T ss_pred CCCEEEecCCCCcc------CCCC-C--CCCCcEEEeCC-CcccEe-CHHHhcCcccccEEECCCCc-ceEeChhHccC-
Confidence 35788999999885 8864 3 36899999999 589985 54446899999999999885 88887653 33
Q ss_pred cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc-CCCCcCCcCCCCCCC
Q 038022 325 QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL-SQNNENDQLGIPAQQ 394 (402)
Q Consensus 325 ~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~l~~~~~~~~~ 394 (402)
+++|+.|+++++ +++.++... ...+++|++|+++++. ++.+|..+ ..+..|+.++++++.
T Consensus 75 -------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 -------LTKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------CCccCEEECCCC-CccccCHHH-hhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 999999999986 788888753 2678999999999975 88898875 778999999998875
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.10 E-value=5.6e-10 Score=112.77 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=81.6
Q ss_pred hhccccccccCCCccccccCCce-EEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022 207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY 284 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~ 284 (402)
..++.+.+.+|+++.+...+++| +||++++....+ ..+++|++|++++|.+++ +|. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~------l~~----~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPA----LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC------CCC----CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC------CCC----CCCCcCEEECCC
Confidence 56677777777666654444555 666665332211 145666666666666664 444 234455555555
Q ss_pred cCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccccccccccceeecccccccceeCCCCC
Q 038022 285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIPYFVFPQLTTLILQDLPKLRCLYPGMH 354 (402)
Q Consensus 285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 354 (402)
++++. +|. .+++|++|++++|. ++.+|...... ..++ ..+++|+.|+++++ +++.+|....
T Consensus 131 -N~l~~-lp~----~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N-~l~~l~~~~~ 201 (622)
T 3g06_A 131 -NQLTS-LPV----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN-QLASLPTLPS 201 (622)
T ss_dssp -SCCSC-CCC----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS-CCSCCCCCCT
T ss_pred -CCCCc-CCC----CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC-CCCCCCCccc
Confidence 34554 232 12455555555443 44443321110 0000 11356666666654 4555443210
Q ss_pred ---------------CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 355 ---------------TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 355 ---------------~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
...+++|+.|++++| .++.+| +.+..|+.+++++++
T Consensus 202 ~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR 252 (622)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC
T ss_pred hhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC
Confidence 011256667777665 477766 334555566666553
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=5.2e-10 Score=94.37 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=47.5
Q ss_pred CEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccc
Q 038022 248 EALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQV 326 (402)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~ 326 (402)
+.++++++.+.. +|.. +. ++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.+|... ..
T Consensus 15 ~~l~~~~n~l~~------iP~~-~~--~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~~--- 79 (174)
T 2r9u_A 15 TLVNCQNIRLAS------VPAG-IP--TDKQRLWLNN-NQITKLEPGV-FDHLVNLQQLYFNSNK-LTAIPTGVFDK--- 79 (174)
T ss_dssp SEEECCSSCCSS------CCSC-CC--TTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTT---
T ss_pred cEEEeCCCCCCc------cCCC-cC--CCCcEEEeCC-CCccccCHHH-hcCCcCCCEEECCCCC-CCccChhHhCC---
Confidence 445555555543 4543 22 4555555555 3455533333 4455555555555543 44444432 12
Q ss_pred cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+++|+.|+|+++ +++.++... ...+++|++|++++++
T Consensus 80 -----l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 -----LTQLTQLDLNDN-HLKSIPRGA-FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -----CTTCCEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC
T ss_pred -----cchhhEEECCCC-ccceeCHHH-hccccCCCEEEeCCCC
Confidence 455555555543 455554432 1345555555555543
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=3.8e-11 Score=114.70 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=26.7
Q ss_pred ccccceeeccccccc-----ceeCCCCCCCCCCcccEEEeecCccccc----ccccc--CCCCcCCcCCCCCCC
Q 038022 332 FPQLTTLILQDLPKL-----RCLYPGMHTSEWPALEILLVCGCDKLKI----IAADL--SQNNENDQLGIPAQQ 394 (402)
Q Consensus 332 l~~L~~L~L~~~~~L-----~~l~~~~~~~~l~~L~~L~l~~c~~l~~----lp~~~--~~~~~l~~~~~~~~~ 394 (402)
+++|+.|+|++|. + ..++... ..+++|++|++++|.--.. +|..+ +.+..|+.+++++++
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCccEEECcCCC-CCcHHHHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 4555555555442 3 2233222 3445555555555542111 23433 224555555555543
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=1.2e-11 Score=118.16 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=120.0
Q ss_pred hhccccccccCCCcc-----c---cccCCce-EEccccccc---------cccCCC---------CCCCEEeecCccccc
Q 038022 207 RKCNAISLRNNKEST-----T---MYSSSEI-TLDISTLLF---------NEKVAL---------PNLEALEISDINVDK 259 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~-----~---~~~~~~L-~L~l~~~~~---------~~l~~l---------~~L~~L~l~~~~~~~ 259 (402)
..++++++.+|.+.. + +..+++| .|+++++.. ..+..+ ++|++|++++|.+..
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 567888888887776 1 4556666 777777432 233344 899999999998862
Q ss_pred ccccCCCCC--cccCCCCCccEEEEeccCCCcc-----ccchHHHhcCCccCeeeeeccccc-----ccccccccccccc
Q 038022 260 IWHYNEIPA--AVFPHFQSLTRLVVWYCDKLKY-----IFVASMIGSLKQLQHLDIRFCEDL-----QEIISENRADQVI 327 (402)
Q Consensus 260 ~~~~~~lp~--~~i~~l~~L~~L~L~~c~~l~~-----~~p~~~i~~l~~L~~L~l~~~~~l-----~~lp~~~~~~~~~ 327 (402)
. .+|. ..+..+++|++|++++| .++. +.|.. +..+++|++|++++|. + ..+|.....
T Consensus 174 ~----~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~---- 242 (386)
T 2ca6_A 174 G----SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG-LAYCQELKVLDLQDNT-FTHLGSSALAIALKS---- 242 (386)
T ss_dssp G----GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT-GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGG----
T ss_pred H----HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH-hhcCCCccEEECcCCC-CCcHHHHHHHHHHcc----
Confidence 0 2442 13667889999999995 7772 22323 6789999999999886 5 556665544
Q ss_pred ccccccccceeeccccccccee-----CCCCCCCCCCcccEEEeecCccccc-----ccccc-CCCCcCCcCCCCCCCC
Q 038022 328 PYFVFPQLTTLILQDLPKLRCL-----YPGMHTSEWPALEILLVCGCDKLKI-----IAADL-SQNNENDQLGIPAQQP 395 (402)
Q Consensus 328 ~~~~l~~L~~L~L~~~~~L~~l-----~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~-~~~~~l~~~~~~~~~~ 395 (402)
+++|++|+|++| .+... +.....+.+++|++|++++|. ++. +|..+ +++..|+.+++++++-
T Consensus 243 ----~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 243 ----WPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp ----CTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ----CCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 889999999987 45543 222111347899999999987 555 88887 6678888888888753
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=8.5e-10 Score=92.66 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cccc
Q 038022 247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQ 325 (402)
Q Consensus 247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~ 325 (402)
.+.++++++.++. +|.. +. ++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.+|... ..
T Consensus 11 ~~~l~~s~n~l~~------ip~~-~~--~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~-- 76 (170)
T 3g39_A 11 GTTVDCSGKSLAS------VPTG-IP--TTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVFDK-- 76 (170)
T ss_dssp TTEEECTTSCCSS------CCSC-CC--TTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTTTTTT--
T ss_pred CCEEEeCCCCcCc------cCcc-CC--CCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCC-cCccChhhccC--
Confidence 3556666666654 5553 32 5566666666 4566643433 4566666666666553 55555432 22
Q ss_pred ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+++|++|+|+++ +++.++... ..++++|++|++++++
T Consensus 77 ------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 ------LTQLTQLSLNDN-QLKSIPRGA-FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ------CCCCCEEECCCC-ccCEeCHHH-hcCCCCCCEEEeCCCC
Confidence 566666666653 555555542 1455666666666543
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=9.1e-10 Score=92.86 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=62.6
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
++|++|++++|.+++ +|...|+.+++|++|+|++ |+++++ |...++++++|++|++++|. ++.+|.. +..
T Consensus 33 ~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK------LEPGVFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeCCCCccc------cCHHHhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence 678888888888886 6544588888888888888 588884 55445788888888888775 7777764 333
Q ss_pred ccccccccccccceeecccc
Q 038022 324 DQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~ 343 (402)
+++|++|+++++
T Consensus 104 --------l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 --------LKSLTHIYLYNN 115 (174)
T ss_dssp --------CTTCSEEECCSS
T ss_pred --------ccCCCEEEeCCC
Confidence 788888888875
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=1.3e-10 Score=110.11 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=111.7
Q ss_pred hhccccccccCCCccc--------cccC-Cce-EEccccccc---------cccCC-CCCCCEEeecCcccccccccCCC
Q 038022 207 RKCNAISLRNNKESTT--------MYSS-SEI-TLDISTLLF---------NEKVA-LPNLEALEISDINVDKIWHYNEI 266 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~--------~~~~-~~L-~L~l~~~~~---------~~l~~-l~~L~~L~l~~~~~~~~~~~~~l 266 (402)
..++.+++.+|.+... +..+ ++| .||++++.. ..+.. .++|++|++++|.+.... ...+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-SDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-HHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-HHHH
Confidence 4567777777776653 2223 455 667766332 22334 368899999988887400 0012
Q ss_pred CCcccCCCC-CccEEEEeccCCCccccchH---HHhcC-CccCeeeeeccccccc-----cccccccccccccccccccc
Q 038022 267 PAAVFPHFQ-SLTRLVVWYCDKLKYIFVAS---MIGSL-KQLQHLDIRFCEDLQE-----IISENRADQVIPYFVFPQLT 336 (402)
Q Consensus 267 p~~~i~~l~-~L~~L~L~~c~~l~~~~p~~---~i~~l-~~L~~L~l~~~~~l~~-----lp~~~~~~~~~~~~~l~~L~ 336 (402)
+. .+..++ +|++|++++| .+++..+.. .+..+ ++|++|++++|. ++. ++..... ..++|+
T Consensus 159 ~~-~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------~~~~L~ 228 (362)
T 3goz_A 159 IQ-ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------IPNHVV 228 (362)
T ss_dssp HH-HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------SCTTCC
T ss_pred HH-HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------CCCCce
Confidence 22 134454 8999999985 787754433 12344 589999999886 665 4443322 024899
Q ss_pred eeecccccccceeCCC---CCCCCCCcccEEEeecCc-------cccccccccCCCCcCCcCCCCCCCC
Q 038022 337 TLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCD-------KLKIIAADLSQNNENDQLGIPAQQP 395 (402)
Q Consensus 337 ~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~-------~l~~lp~~~~~~~~l~~~~~~~~~~ 395 (402)
+|+++++ .+...+.. .....+++|++|++++|. .+..++..+..+..|+.+++++++-
T Consensus 229 ~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 229 SLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp EEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred EEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 9999986 56654331 112567889999999886 3555667788888888888888763
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=6.5e-12 Score=108.46 Aligned_cols=135 Identities=12% Similarity=0.176 Sum_probs=104.3
Q ss_pred cCCCCCCCEEeecCccccccc-ccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIW-HYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~-~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
+.....++.++++++.+.+.. ....+|.. ++.+++|++|++++ +.+++ +| . ++++++|++|++++|. ++.+|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~-n~l~~-l~-~-~~~l~~L~~L~l~~n~-l~~l~~ 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALST-NNIEK-IS-S-LSGMENLRILSLGRNL-IKKIEN 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSE-EEESC-CC-C-HHHHTTCCEEEEEEEE-ECSCSS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCC-CCCcc-cc-c-cccCCCCCEEECCCCC-cccccc
Confidence 344556666677776666510 00123444 88999999999999 48998 57 4 7899999999999996 888887
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc--ccCCCCcCCcCCCCCCC
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA--DLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~~l~~~~~~~~~ 394 (402)
.... +++|+.|+++++ +++.++ . ...+++|+.|++++|. ++.+|. .++.+..|+.++++++.
T Consensus 88 ~~~~--------~~~L~~L~L~~N-~l~~l~-~--~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 88 LDAV--------ADTLEELWISYN-QIASLS-G--IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHH--------HHHCSEEEEEEE-ECCCHH-H--HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred hhhc--------CCcCCEEECcCC-cCCcCC-c--cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 5554 799999999987 788876 2 2678999999999976 787776 78889999999988774
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.3e-09 Score=91.46 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=61.5
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA 323 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~ 323 (402)
++|++|++++|.+++ ++...|..+++|++|+|++ |+++++ |...++++++|++|++++|. ++.+|.. ...
T Consensus 30 ~~l~~L~L~~N~i~~------~~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQITK------LEPGVFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcCCCcCCc------cChhhhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 678888888888886 6544588888888888888 578875 44435788888888888775 7777764 333
Q ss_pred ccccccccccccceeecccc
Q 038022 324 DQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~~ 343 (402)
+++|+.|+|+++
T Consensus 101 --------l~~L~~L~L~~N 112 (170)
T 3g39_A 101 --------LKSLTHIWLLNN 112 (170)
T ss_dssp --------CTTCCEEECCSS
T ss_pred --------CCCCCEEEeCCC
Confidence 788888888875
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.87 E-value=2.8e-10 Score=107.69 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=8.5
Q ss_pred CCCCEEeecCccccc
Q 038022 245 PNLEALEISDINVDK 259 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~ 259 (402)
++|++|++++|.++.
T Consensus 80 ~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 80 ANVTSLNLSGNFLSY 94 (362)
T ss_dssp TTCCEEECCSSCGGG
T ss_pred CCccEEECcCCcCCh
Confidence 555555555555553
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1e-08 Score=96.24 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=70.4
Q ss_pred cccccCCCCCCCEEeecC-cccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022 237 LFNEKVALPNLEALEISD-INVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ 315 (402)
Q Consensus 237 ~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~ 315 (402)
+|. +..+++|+.|+|++ |.+.+ +|...|+.|++|++|+|++ |+++++.|.. +++|++|++|+|++|. +.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~------~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQH------LELRDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCE------ECGGGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSSC-CS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCC------cChhHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCCc-cc
Confidence 366 88888999999996 88886 7766688999999999998 6899865555 6889999999999885 88
Q ss_pred ccccccccccccccccccccceeecccc
Q 038022 316 EIISENRADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
.+|..... ..+|+.|+|.++
T Consensus 94 ~~~~~~~~--------~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQ--------GLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTC--------SCCCCEEECCSS
T ss_pred eeCHHHcc--------cCCceEEEeeCC
Confidence 88865433 233888888865
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.67 E-value=3.3e-09 Score=103.45 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=16.9
Q ss_pred CCcccEEEeecCccccc-----cccccCCCCcCCcCCCCCC
Q 038022 358 WPALEILLVCGCDKLKI-----IAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~~-----lp~~~~~~~~l~~~~~~~~ 393 (402)
+++|++|++++|. ++. +|..+..+..|+.++++++
T Consensus 255 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 255 SSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 4455555555543 333 4444444444555555444
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=7e-08 Score=90.48 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=82.9
Q ss_pred CEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccccc
Q 038022 248 EALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQ 325 (402)
Q Consensus 248 ~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~ 325 (402)
..++++++ .+++ +|. ++.+++|++|+|+++|.++++.|.. +++|++|++|+|++|. +..+|.. +..
T Consensus 11 ~~v~~~~~n~l~~------ip~--l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~-- 78 (347)
T 2ifg_A 11 SGLRCTRDGALDS------LHH--LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG-LRFVAPDAFHF-- 78 (347)
T ss_dssp SCEECCSSCCCTT------TTT--SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSC-CCEECTTGGGS--
T ss_pred CEEEcCCCCCCCc------cCC--CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCc-cceeCHHHhcC--
Confidence 35688887 8885 998 8999999999999657999965455 7999999999999985 8888764 344
Q ss_pred ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022 326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+++|+.|+|+++ +|..+|.... ..+ +|+.|++.+++
T Consensus 79 ------l~~L~~L~l~~N-~l~~~~~~~~-~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 ------TPRLSRLNLSFN-ALESLSWKTV-QGL-SLQELVLSGNP 114 (347)
T ss_dssp ------CSCCCEEECCSS-CCSCCCSTTT-CSC-CCCEEECCSSC
T ss_pred ------CcCCCEEeCCCC-ccceeCHHHc-ccC-CceEEEeeCCC
Confidence 999999999985 8999987652 233 49999998865
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.61 E-value=1.5e-09 Score=105.97 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=17.6
Q ss_pred CCcccEEEeecCcccc-----ccccccCCCCcCCcCCCCCC
Q 038022 358 WPALEILLVCGCDKLK-----IIAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 358 l~~L~~L~l~~c~~l~-----~lp~~~~~~~~l~~~~~~~~ 393 (402)
.++|++|++++|. ++ .+|..+..+..|+.++++++
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 3455555555554 33 45555555555555555544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=2e-07 Score=86.67 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=21.3
Q ss_pred CCce-EEcccc----ccccccCCCCCCCEEeecCcccc
Q 038022 226 SSEI-TLDIST----LLFNEKVALPNLEALEISDINVD 258 (402)
Q Consensus 226 ~~~L-~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~ 258 (402)
|++| .++++. .-...|..+++|+.+++++|.+.
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence 6666 555544 22356778888888888877654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.49 E-value=2.5e-08 Score=100.35 Aligned_cols=56 Identities=11% Similarity=-0.110 Sum_probs=28.3
Q ss_pred ccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccc--cccccCCCCcCCcCCCC
Q 038022 332 FPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKI--IAADLSQNNENDQLGIP 391 (402)
Q Consensus 332 l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~l~~~~~~ 391 (402)
+++|+.|.++++ ....++... ..+++|++|++++|. +.. ++.-++.+..|+.++++
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCcccc-chhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 455555555543 222333222 456677777777766 332 22224555666665554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.49 E-value=1.6e-08 Score=101.79 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=109.3
Q ss_pred hhccccccccCCCccc-----cccCCce-EEccccc-------cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022 207 RKCNAISLRNNKESTT-----MYSSSEI-TLDISTL-------LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH 273 (402)
Q Consensus 207 ~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~ 273 (402)
..++++.+.++.+... ...+++| .|++++. ++..+.++++|++|++++|.+++. ....++. ....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~-~~~~l~~-~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSH-FPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC-CGGGGGG-SCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc-chHHHHH-Hhhc
Confidence 4567777776665543 2256666 6666653 334455889999999999987640 0000222 2346
Q ss_pred CCCccEEEEeccC-CCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecc-----------
Q 038022 274 FQSLTRLVVWYCD-KLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQ----------- 341 (402)
Q Consensus 274 l~~L~~L~L~~c~-~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~----------- 341 (402)
+++|++|++++|. .+........+.++++|++|++++|..++.+|..... +++|++|++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~--------~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--------APQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH--------CTTCSEEECSBCCCCCCHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc--------CCcceEcccccccCccchhhH
Confidence 7799999999874 2321111223456799999999998767777765554 7888888643
Q ss_pred --------cccccceeCCC-------C--CCCCCCcccEEEeecCccccc--cccccCCCCcCCcCCCCCC
Q 038022 342 --------DLPKLRCLYPG-------M--HTSEWPALEILLVCGCDKLKI--IAADLSQNNENDQLGIPAQ 393 (402)
Q Consensus 342 --------~~~~L~~l~~~-------~--~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~l~~~~~~~~ 393 (402)
+|++|+.+..- . ....+++|++|++++|. +.. ++.-+..+..|+.++++++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 44555554110 0 01246889999999988 553 3333556677777777654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.5e-07 Score=78.53 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcC----CccCeeeeeccccccccccc
Q 038022 245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSL----KQLQHLDIRFCEDLQEIISE 320 (402)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l----~~L~~L~l~~~~~l~~lp~~ 320 (402)
.+|+.||++++.++.. .+.. +..+++|++|+|++|..+++. -...++.+ ++|++|+|++|.++++---.
T Consensus 61 ~~L~~LDLs~~~Itd~----GL~~--L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----GFDH--MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGG----GGGG--GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHH----HHHH--hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4688888888876531 1322 567888888888888777763 22224443 36888888887766542110
Q ss_pred cccccccccccccccceeecccccccce
Q 038022 321 NRADQVIPYFVFPQLTTLILQDLPKLRC 348 (402)
Q Consensus 321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 348 (402)
.+..+++|++|++++|+.++.
T Consensus 134 -------~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -------ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -------HGGGCTTCCEEEEESCTTCCC
T ss_pred -------HHhcCCCCCEEECCCCCCCCc
Confidence 111266677777777766654
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=9.6e-08 Score=79.70 Aligned_cols=100 Identities=8% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccccccccc-ccccccceeecccc
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPY-FVFPQLTTLILQDL 343 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~-~~l~~L~~L~L~~~ 343 (402)
+|....+. .+|+.||+++|. ++..--.. +.++++|++|+|++|..+++---. +.. . ...++|++|+|++|
T Consensus 53 LP~~~~~~-~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~-----~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 53 LPTGPLDK-YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQ-----LENLQKSMLEMEIISC 124 (176)
T ss_dssp SCCCSTTC-CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHT-----CHHHHHHCCEEEEESC
T ss_pred CCcccCCC-ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHh-----cccccCCCCEEEcCCC
Confidence 66532233 479999999984 87743333 689999999999999877653111 000 0 00357999999999
Q ss_pred cccceeCCCCCCCCCCcccEEEeecCccccc
Q 038022 344 PKLRCLYPGMHTSEWPALEILLVCGCDKLKI 374 (402)
Q Consensus 344 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 374 (402)
++++.-.... ..++++|++|++++|+.++.
T Consensus 125 ~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 125 GNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred CcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence 9887643221 25789999999999998875
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=2.7e-08 Score=100.09 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeec
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRF 310 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~ 310 (402)
+|. .+..+++|++|++++|. +++..+...++++++|++|++++
T Consensus 285 l~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 285 MPI-LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp GGG-GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred HHH-HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 444 35667778888887764 55432323356777777777763
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.37 E-value=1.8e-08 Score=101.49 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=86.8
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
...+++|++|++++|.++. ..+.. +. .+++|++|++++|..+........+.++++|++|++++|. ++....
T Consensus 101 ~~~~~~L~~L~L~~~~~~~-----~~~~~-l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~ 173 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTD-----DCLEL-IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG 173 (594)
T ss_dssp HHHCTTCCEEEEESCBCCH-----HHHHH-HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG
T ss_pred HHhCCCCCeEEeeCcEEcH-----HHHHH-HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch
Confidence 3567888999999887765 22332 43 5788999999988666553233335678899999998886 443211
Q ss_pred -ccccccccccccccccceeecccccccceeCCC---CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCC
Q 038022 320 -ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIP 391 (402)
Q Consensus 320 -~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~ 391 (402)
.... -...+++|++|++++|. ..+... ....++++|++|++++|..++.+|..+..+..|+.++++
T Consensus 174 ~~l~~----~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 174 HWLSH----FPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp GGGGG----SCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHH----HhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 1110 00127788888888774 111110 001346888888888887777777777666667666544
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=2.5e-06 Score=79.27 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccc-eeecccccccceeCCC
Q 038022 274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLT-TLILQDLPKLRCLYPG 352 (402)
Q Consensus 274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~-~L~L~~~~~L~~l~~~ 352 (402)
+++|+.++|++ ++++.+ |...+.++.+|+.|++.++ ++.++.. ++..+++|+ .+++.+ +++.++..
T Consensus 225 ~~~L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCC-CCccee-cHhhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence 67888888887 478875 5444778888888888764 7777654 233377888 888876 67888766
Q ss_pred CCCCCCCcccEEEeecCcccccccc-ccCCCCcCCc
Q 038022 353 MHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQ 387 (402)
Q Consensus 353 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~ 387 (402)
.+ .++++|+.|++++ +.++.++. .+..+..|+.
T Consensus 292 aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 292 AF-MGCDNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TT-TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred hh-hCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 53 5788888888866 34777776 4555555544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=4e-08 Score=93.12 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=83.6
Q ss_pred hhhccccccccCCCccc--------c-ccCCce-EEccccccc------cccCCCCCCCEEeecCcccccccccCCCCCc
Q 038022 206 LRKCNAISLRNNKESTT--------M-YSSSEI-TLDISTLLF------NEKVALPNLEALEISDINVDKIWHYNEIPAA 269 (402)
Q Consensus 206 ~~~~~~l~l~~~~~~~~--------~-~~~~~L-~L~l~~~~~------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~ 269 (402)
...++.+++.+|.++.. + ..+..| .||++++.. .....+++|+.|+|++|.++. ....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~------~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP------EACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH------HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH------HHHH
Confidence 35677888888877653 1 123455 667766322 112335577888888887753 1111
Q ss_pred cc-----CCCCCccEEEEeccCCCccc----cchHHHhcCCccCeeeeecccccccc-----cccccccccccccccccc
Q 038022 270 VF-----PHFQSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDLQEI-----ISENRADQVIPYFVFPQL 335 (402)
Q Consensus 270 ~i-----~~l~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l~~l-----p~~~~~~~~~~~~~l~~L 335 (402)
.+ ...++|++|+|++| .++.. ++.. +..+++|++|+|++|. ++.. +..... .++|
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~--------~~~L 213 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR--------NRQL 213 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG--------CSCC
T ss_pred HHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc--------CCCc
Confidence 11 23467888888885 66542 1222 3567788888888775 5432 222222 5678
Q ss_pred ceeecccccccceeCCCCC---CCCCCcccEEEeecCc
Q 038022 336 TTLILQDLPKLRCLYPGMH---TSEWPALEILLVCGCD 370 (402)
Q Consensus 336 ~~L~L~~~~~L~~l~~~~~---~~~l~~L~~L~l~~c~ 370 (402)
++|+|++| .++....... ....++|++|++++|+
T Consensus 214 ~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 214 QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 88888876 4543221100 1245778888888776
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=3.5e-07 Score=86.61 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=89.8
Q ss_pred CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH----hcCCccCeeeeeccccccc---
Q 038022 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI----GSLKQLQHLDIRFCEDLQE--- 316 (402)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i----~~l~~L~~L~l~~~~~l~~--- 316 (402)
.++|+.|+|++|.+.. .-.......+++|++|+|++| .++......+. ...++|++|++++|. ++.
T Consensus 100 ~~~L~~L~Ls~n~l~~-----~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~ 172 (372)
T 3un9_A 100 RHALDEVNLASCQLDP-----AGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGV 172 (372)
T ss_dssp SSCEEEEECTTCCCCH-----HHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHH
T ss_pred CCCceEEEecCCCCCH-----HHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHH
Confidence 3799999999998864 111112345678999999995 78764333211 246889999999996 654
Q ss_pred --cccccccccccccccccccceeecccccccceeC-----CCCCCCCCCcccEEEeecCcccc-----ccccccCCCCc
Q 038022 317 --IISENRADQVIPYFVFPQLTTLILQDLPKLRCLY-----PGMHTSEWPALEILLVCGCDKLK-----IIAADLSQNNE 384 (402)
Q Consensus 317 --lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~-----~~~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~~~~ 384 (402)
++..... .++|++|+|++| .+.... ... ...++|++|++++|. ++ .++..+.....
T Consensus 173 ~~l~~~L~~--------~~~L~~L~Ls~N-~l~~~g~~~L~~~L--~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 173 AVLMEGLAG--------NTSVTHLSLLHT-GLGDEGLELLAAQL--DRNRQLQELNVAYNG-AGDTAALALARAAREHPS 240 (372)
T ss_dssp HHHHHHHHT--------CSSCCEEECTTS-SCHHHHHHHHHHHG--GGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhc--------CCCcCEEeCCCC-CCCcHHHHHHHHHH--hcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCC
Confidence 2222222 789999999987 465422 111 456799999999987 54 34455556678
Q ss_pred CCcCCCCCCC
Q 038022 385 NDQLGIPAQQ 394 (402)
Q Consensus 385 l~~~~~~~~~ 394 (402)
|+.++++++.
T Consensus 241 L~~L~Ls~N~ 250 (372)
T 3un9_A 241 LELLHLYFNE 250 (372)
T ss_dssp CCEEECTTSS
T ss_pred CCEEeccCCC
Confidence 9999998885
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.92 E-value=0.00012 Score=69.73 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc---
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ--- 315 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~--- 315 (402)
..|..+++|+.+.+..+ ++. ++...|.. .+|+.+.+.. +++.+ +...+.++++|+.+++.++. +.
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~------I~~~aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~-~~~~~ 287 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VST------IGQEAFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGST-FNDDP 287 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCE------ECTTTTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSC-CCCCT
T ss_pred hHhhCCCCCCEEecCCC-ccC------cccccccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCcc-ccCCc
Confidence 45566667777776653 222 44444444 4555665532 45553 22224566666666665442 11
Q ss_pred --ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEe
Q 038022 316 --EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLV 366 (402)
Q Consensus 316 --~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l 366 (402)
.++.. .+..+++|+.+.+.+ .++.++...+ .++++|+.+.|
T Consensus 288 ~~~I~~~-------aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~l 330 (401)
T 4fdw_A 288 EAMIHPY-------CLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTI 330 (401)
T ss_dssp TCEECTT-------TTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEE
T ss_pred ccEECHH-------HhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEE
Confidence 23221 222255555555552 3555554432 34555555555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=4.1e-06 Score=78.79 Aligned_cols=138 Identities=18% Similarity=0.133 Sum_probs=76.7
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHh--cCCccCeeeeecccc---
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIG--SLKQLQHLDIRFCED--- 313 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~--~l~~L~~L~l~~~~~--- 313 (402)
..+..+++|+.|.|+++.-. .+|. +. +++|++|+|..| .+....... +. .+|+|++|+|+.+.+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l------~l~~--~~-~~~L~~L~L~~~-~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL------SIGK--KP-RPNLKSLEIISG-GLPDSVVED-ILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC------BCCS--CB-CTTCSEEEEECS-BCCHHHHHH-HHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc------eecc--cc-CCCCcEEEEecC-CCChHHHHH-HHHccCCCCcEEEEeccccccc
Confidence 44567788888888876322 2554 33 778888888875 454421112 33 688888888864211
Q ss_pred ----ccccccccccccccccccccccceeecccccccceeCCCC-CCCCCCcccEEEeecCccccc-----cccccCCCC
Q 038022 314 ----LQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM-HTSEWPALEILLVCGCDKLKI-----IAADLSQNN 383 (402)
Q Consensus 314 ----l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~ 383 (402)
+..+... .....+|+|++|+|.+|..-...+... ....+++|++|+|+.|. ++. ++..+..+.
T Consensus 235 ~~~~~~~l~~~------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 235 FDGDMNVFRPL------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIK 307 (362)
T ss_dssp CCSCGGGTGGG------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHT
T ss_pred cchhHHHHHHH------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCC
Confidence 1111110 111237888888887764221111000 01346788888886543 554 455545566
Q ss_pred cCCcCCCCCCC
Q 038022 384 ENDQLGIPAQQ 394 (402)
Q Consensus 384 ~l~~~~~~~~~ 394 (402)
.|+.++++.+.
T Consensus 308 ~L~~L~L~~n~ 318 (362)
T 2ra8_A 308 HLKFINMKYNY 318 (362)
T ss_dssp TCSEEECCSBB
T ss_pred cceEEECCCCc
Confidence 67777776553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=5.6e-06 Score=77.84 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=87.2
Q ss_pred cccCCCCCCCEEeecCccccc---cccc-CCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc
Q 038022 239 NEKVALPNLEALEISDINVDK---IWHY-NEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL 314 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~---~~~~-~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l 314 (402)
.++.++++|+.|.+.++.... .|.. ..++. .+..+++|+.|+|++|..+. +|. + .+++|++|+|..|. +
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~--l~~--~-~~~~L~~L~L~~~~-l 205 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS--IGK--K-PRPNLKSLEIISGG-L 205 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB--CCS--C-BCTTCSEEEEECSB-C
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce--ecc--c-cCCCCcEEEEecCC-C
Confidence 345678899999997654321 1211 12433 46778999999999964443 333 3 48999999998775 3
Q ss_pred ccc-ccccccccccccccccccceeecccccc-------cceeCCCCCCCCCCcccEEEeecCcccccccccc---CCCC
Q 038022 315 QEI-ISENRADQVIPYFVFPQLTTLILQDLPK-------LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL---SQNN 383 (402)
Q Consensus 315 ~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~-------L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~---~~~~ 383 (402)
..- ..... ...+|+|++|+|+...+ +..+........+|+|++|++++|......+..+ +.+.
T Consensus 206 ~~~~l~~l~------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 206 PDSVVEDIL------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp CHHHHHHHH------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred ChHHHHHHH------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 221 11111 11289999999863211 2222222222468999999999987543332222 3467
Q ss_pred cCCcCCCCCCC
Q 038022 384 ENDQLGIPAQQ 394 (402)
Q Consensus 384 ~l~~~~~~~~~ 394 (402)
.|+.++++.++
T Consensus 280 ~L~~LdLs~n~ 290 (362)
T 2ra8_A 280 QLETMDISAGV 290 (362)
T ss_dssp GCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 88888888765
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=3.5e-05 Score=68.93 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCC--ccCeeeeeccccccccc
Q 038022 242 VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLK--QLQHLDIRFCEDLQEII 318 (402)
Q Consensus 242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~--~L~~L~l~~~~~l~~lp 318 (402)
.++++|+.|+|++|.++++- .+|. .+..+++|++|+|++ |.++++ . . +..+. +|++|++++|.--..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~---~l~~-~~~~l~~L~~L~Ls~-N~i~~~-~-~-l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD---DMSS-IVQKAPNLKILNLSG-NELKSE-R-E-LDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG---GGTT-HHHHSTTCCEEECTT-SCCCSG-G-G-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCc---cchh-HHhhCCCCCEEECCC-CccCCc-h-h-hhhcccCCcceEEccCCcCccccC
Confidence 46788888888888887510 1233 356788888888888 688874 2 1 34444 88888888886333333
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.48 E-value=0.00064 Score=64.73 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=46.4
Q ss_pred ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022 238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317 (402)
Q Consensus 238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l 317 (402)
...|..+++|+.+++++|.++. +|...|. ..+|+.+.+.. +++.+ +...+.++++|+.+++..+ ++.+
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~------I~~~aF~-~~~L~~l~lp~--~l~~I-~~~aF~~~~~L~~l~l~~~--l~~I 240 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITK------LPASTFV-YAGIEEVLLPV--TLKEI-GSQAFLKTSQLKTIEIPEN--VSTI 240 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSE------ECTTTTT-TCCCSEEECCT--TCCEE-CTTTTTTCTTCCCEECCTT--CCEE
T ss_pred HHHhhCcccCCeeecCCCcceE------echhhEe-ecccCEEEeCC--chhee-hhhHhhCCCCCCEEecCCC--ccCc
Confidence 3567888889999988888775 6666555 46777777764 46664 3333567777777777642 4444
Q ss_pred cc
Q 038022 318 IS 319 (402)
Q Consensus 318 p~ 319 (402)
+.
T Consensus 241 ~~ 242 (401)
T 4fdw_A 241 GQ 242 (401)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=5.9e-05 Score=63.72 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=71.1
Q ss_pred cccCCCCCCCEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeeccccc
Q 038022 239 NEKVALPNLEALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCEDL 314 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~~l 314 (402)
..+...+.|+.|+|++| .+.... ...+.. .+...++|++|+|++| .+...... ..+...++|++|+|++|. +
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPT-LKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHH-HHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HHHhcCCCCCEEEecCCCCCCHHH-HHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 45677888999999988 765300 000222 2556678999999985 67642111 114556789999999885 5
Q ss_pred cc-----cccccccccccccccccccceeec--cccccccee-----CCCCCCCCCCcccEEEeecCc
Q 038022 315 QE-----IISENRADQVIPYFVFPQLTTLIL--QDLPKLRCL-----YPGMHTSEWPALEILLVCGCD 370 (402)
Q Consensus 315 ~~-----lp~~~~~~~~~~~~~l~~L~~L~L--~~~~~L~~l-----~~~~~~~~l~~L~~L~l~~c~ 370 (402)
+. +...... .++|++|+| +++ .+..- ... ....++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~--------n~~L~~L~L~~~~N-~i~~~g~~~l~~~--L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQS--------NTSLIELRIDNQSQ-PLGNNVEMEIANM--LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGG--------CSSCCEEECCCCSS-CCCHHHHHHHHHH--HHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHh--------CCCceEEEecCCCC-CCCHHHHHHHHHH--HHhCCCcCEEeccCCC
Confidence 44 2222222 677888988 543 44431 111 1344788889988765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.10 E-value=0.00032 Score=62.64 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCC--CccEEEEeccCCCccccc------hHHHhcCCccCeee
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ--SLTRLVVWYCDKLKYIFV------ASMIGSLKQLQHLD 307 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~--~L~~L~L~~c~~l~~~~p------~~~i~~l~~L~~L~ 307 (402)
..+..+++|+.|+|++|.+++ +.. +..+. +|++|+|++ |.+.+.+| ...+..+|+|+.||
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~------~~~--l~~l~~l~L~~L~L~~-Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKS------ERE--LDKIKGLKLEELWLDG-NSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCS------GGG--GGGGTTSCCSEEECTT-STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccCC------chh--hhhcccCCcceEEccC-CcCccccCcchhHHHHHHHHCcccCeEC
Confidence 345689999999999999986 422 44444 999999999 57876444 23367788888887
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.56 E-value=0.00061 Score=57.35 Aligned_cols=92 Identities=13% Similarity=-0.024 Sum_probs=56.4
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCcccc----chHHHhcCCccCeeee--eccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIF----VASMIGSLKQLQHLDI--RFCE 312 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~----p~~~i~~l~~L~~L~l--~~~~ 312 (402)
..+...++|++|+|++|.+...- ...+.. .+...++|++|+|++| .+.... ... +...++|++|++ ++|.
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~-~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPV-AFALAE-MLKVNNTLKSLNVESN-FISGSGILALVEA-LQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHH-HHHHHH-HHHHCSSCCEEECCSS-CCCHHHHHHHHHG-GGGCSSCCEEECCCCSSC
T ss_pred HHHHhCCCcCEEECcCCCCChHH-HHHHHH-HHHhCCCcCEEECcCC-cCCHHHHHHHHHH-HHhCCCceEEEecCCCCC
Confidence 45667788999999998875300 000222 2445578999999984 776531 222 456678999999 6664
Q ss_pred cccc-----cccccccccccccccccccceeecccc
Q 038022 313 DLQE-----IISENRADQVIPYFVFPQLTTLILQDL 343 (402)
Q Consensus 313 ~l~~-----lp~~~~~~~~~~~~~l~~L~~L~L~~~ 343 (402)
++. +...... .++|++|+|+++
T Consensus 135 -i~~~g~~~l~~~L~~--------n~~L~~L~L~~n 161 (185)
T 1io0_A 135 -LGNNVEMEIANMLEK--------NTTLLKFGYHFT 161 (185)
T ss_dssp -CCHHHHHHHHHHHHH--------CSSCCEEECCCS
T ss_pred -CCHHHHHHHHHHHHh--------CCCcCEEeccCC
Confidence 443 2111111 577888888875
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.34 E-value=0.0075 Score=57.03 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=82.6
Q ss_pred cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022 239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII 318 (402)
Q Consensus 239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp 318 (402)
..|..+.+|+.+.+..+... ++...|..+.+|+.+.+.. .++.+ +...+.++.+|+.++|.. +++.+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQDIEFSS--RITEL-PESVFAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred ceeeecccccEEecccccce-------ecCcccccccccccccCCC--ccccc-CceeecCCCCcCEEEeCC--cccEeh
Confidence 45677788888887655432 5555678888899998864 67774 554478889999999864 366665
Q ss_pred cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022 319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ 394 (402)
Q Consensus 319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~ 394 (402)
.. ++..+.+|+.+.+-. .++.+....+ .++++|+.+.+.+... .. ..+.....|+.+.++.+.
T Consensus 327 ~~-------aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 DD-------AFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TT-------TTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCHH--HH-HTCBCCCCC---------
T ss_pred Hh-------HhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeCCCC
Confidence 43 333378899888863 4777766543 5788999998876432 11 344455566666665543
No 160
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.20 E-value=0.056 Score=49.67 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred ceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHcc-CChhhHHHHHHHhcCCCCCCC
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTVAKALRG-KSLHEWKNSLRELRTPSMVNF 82 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~-~~~~~W~~~l~~l~~~~~~~~ 82 (402)
..+++.+|+.+|+.+++....+ ...... .+...+|+..|+|.|+++..++..+.. .+...+ ...+
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~-------- 262 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRT-------- 262 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHH--------
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHH--------
Confidence 3789999999999999988662 111111 356789999999999999999876532 222222 1111
Q ss_pred CCchhHHHHHHhhcccCC---CcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhcc
Q 038022 83 EGVSAETYSSIELSFNQL---KGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCL 159 (402)
Q Consensus 83 ~~~~~~i~~~l~lsy~~L---~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~l 159 (402)
.+.+...+.-.+..+ ++. .+..+..+|. . .++...+.....+. .- .. + ......+++.|++.++
T Consensus 263 ---~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g-~~~~~~l~~~~~~~-~~-~~-~----~~~~~~~l~~L~~~gl 329 (350)
T 2qen_A 263 ---LEVAKGLIMGELEELRRRSPR-YVDILRAIAL-G-YNRWSLIRDYLAVK-GT-KI-P----EPRLYALLENLKKMNW 329 (350)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT-T-CCSHHHHHHHHHHT-TC-CC-C----HHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh-C-CCCHHHHHHHHHHH-hC-CC-C----HHHHHHHHHHHHhCCC
Confidence 001111111111222 566 4888888776 3 24455554443221 00 11 1 1234567999999999
Q ss_pred ccccCCCCeEEc-cHHHHHHH
Q 038022 160 LLEGDSNEEFSM-HDVVRDVA 179 (402)
Q Consensus 160 l~~~~~~~~~~m-hdlv~~~a 179 (402)
+... ++.|++ |++++++.
T Consensus 330 i~~~--~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 330 IVEE--DNTYKIADPVVATVL 348 (350)
T ss_dssp EEEE--TTEEEESSHHHHHHH
T ss_pred EEec--CCEEEEecHHHHHHH
Confidence 9644 355665 77777664
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.43 E-value=0.073 Score=49.72 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=50.0
Q ss_pred cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022 241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE 320 (402)
Q Consensus 241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~ 320 (402)
+..+..|+.+.+..+ ++. ++...+..+.+|+.+.+.. +++.+ +...+.++.+|+.+.+..+. ++.++..
T Consensus 236 f~~~~~L~~i~lp~~-v~~------I~~~aF~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~~ 304 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTS------IGSFLLQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNSA-IETLEPR 304 (379)
T ss_dssp TTTCSSCCEEEECTT-CCE------ECTTTTTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCTT-CCEECTT
T ss_pred ccCCccceEEEcCCC-ccE------eCccccceeehhccccccc--cceec-cccccccccccccccccccc-cceehhh
Confidence 344445555555433 221 3333455555666666643 35443 33334556666666665432 4555432
Q ss_pred cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEe
Q 038022 321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLV 366 (402)
Q Consensus 321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l 366 (402)
.+..+.+|+.+.|.+ .++.+....+ .++++|+.+.+
T Consensus 305 -------aF~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~i 340 (379)
T 4h09_A 305 -------VFMDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISY 340 (379)
T ss_dssp -------TTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCC
T ss_pred -------hhcCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEE
Confidence 122255666666542 3555554332 34455555544
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.42 E-value=0.16 Score=46.54 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=85.2
Q ss_pred ceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHH-HHHHhcCCCCCC
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKN-SLRELRTPSMVN 81 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~-~l~~l~~~~~~~ 81 (402)
..+++.+|+.+|+.+++...++ ........ .+|++.|+|.|+++..++..+... +.++|-. +.+..
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 270 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA------- 270 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------
Confidence 4789999999999999998662 11122221 789999999999999999876432 2333321 11110
Q ss_pred CCCchhHHHHHHh-hccc--CCCcchhhhHHhhhccCCCCCCHHHHHHHHh-hcCccCCCCcHHHHHHHHHHHHHHHHHh
Q 038022 82 FEGVSAETYSSIE-LSFN--QLKGEQLKKIFLLCSLMGNRILTLDLFKYSM-GLGIFKGVNKMEDARDKLYASVHELRDS 157 (402)
Q Consensus 82 ~~~~~~~i~~~l~-lsy~--~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~l~~L~~~ 157 (402)
...+...+. +.++ .+++. .+..+..+|. . . +...+..... ..|. +. . ......+++.|++.
T Consensus 271 ----~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g-~-~~~~l~~~~~~~~g~--~~-~----~~~~~~~L~~L~~~ 335 (357)
T 2fna_A 271 ----KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C-G-KWSDVKRALELEEGI--EI-S----DSEIYNYLTQLTKH 335 (357)
T ss_dssp ----HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C-B-CHHHHHHHHHHHHCS--CC-C----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C-C-CHHHHHHHHHHhcCC--CC-C----HHHHHHHHHHHHhC
Confidence 011111111 1111 57777 4888888877 2 2 4454443211 1121 00 1 12345679999999
Q ss_pred ccccccCCCCeEE-ccHHHHHH
Q 038022 158 CLLLEGDSNEEFS-MHDVVRDV 178 (402)
Q Consensus 158 ~ll~~~~~~~~~~-mhdlv~~~ 178 (402)
+++.... +.|+ .|++++++
T Consensus 336 gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 336 SWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TSEEESS--SCEEESSHHHHHH
T ss_pred CCEEecC--CEEEecCHHHHHh
Confidence 9996432 5566 47888875
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.22 E-value=0.085 Score=49.65 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK 345 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~ 345 (402)
+|...+..+.+|+.+.+.. +++.+.... +.++.+|+.+++.. .++.+... ++..+.+|+.+.+.. +
T Consensus 288 i~~~~F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~ 353 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGKR-------SFRGCTSLSNINFPL--S 353 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTT-------TTTTCTTCCEECCCT--T
T ss_pred ecccccccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhHH-------hccCCCCCCEEEECc--c
Confidence 4444566777788888765 466643333 67788888888853 36666543 233377888888764 4
Q ss_pred cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCC
Q 038022 346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNEND 386 (402)
Q Consensus 346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~ 386 (402)
++.+....+ .++++|+.+.+.. .++.+...+.+...|+
T Consensus 354 l~~I~~~aF-~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 354 LRKIGANAF-QGCINLKKVELPK--RLEQYRYDFEDTTKFK 391 (394)
T ss_dssp CCEECTTTB-TTCTTCCEEEEEG--GGGGGGGGBCTTCEEE
T ss_pred ccEehHHHh-hCCCCCCEEEECC--CCEEhhheecCCCCCc
Confidence 777776543 5678888888754 2445555555555443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.21 E-value=0.17 Score=47.23 Aligned_cols=131 Identities=13% Similarity=0.145 Sum_probs=88.1
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.+....+|+.+.+..+- .. ++...+..+.+|+.+.+.. .++.+... .+.++.+|+.+.+.. .++.++.
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~------i~~~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l~~--~i~~i~~ 279 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TT------LGDGAFYGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNFYA--KVKTVPY 279 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CE------ECTTTTTTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEECC--CCSEECT
T ss_pred ccccccccceeeeccce-eE------EccccccCCccceEEEcCC--CccEeCcc-ccceeehhccccccc--cceeccc
Confidence 44555666666665432 21 4555577888899999976 47775333 367888999998854 3666665
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCC
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQ 393 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~ 393 (402)
. .+..+++|+.+.+.+ ..++.++...+ .++++|+.+.|.. .++.++. .+.+...|+.+.++.+
T Consensus 280 ~-------aF~~c~~L~~i~l~~-~~i~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 L-------LCSGCSNLTKVVMDN-SAIETLEPRVF-MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp T-------TTTTCTTCCEEEECC-TTCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred c-------ccccccccccccccc-cccceehhhhh-cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 4 233388999999875 36888887654 5788999998853 3666665 4556677777777544
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.79 E-value=0.029 Score=43.95 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=19.6
Q ss_pred CccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022 276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~ 312 (402)
+|++|+|++ |.++.+ |...+..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence 456666666 456653 43335556666666665553
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.44 E-value=0.27 Score=46.29 Aligned_cols=149 Identities=14% Similarity=0.036 Sum_probs=83.4
Q ss_pred EeccCCCHHHHHHHHHHhh---CCC-CCCcchHHHHHHHHHHhC------CChHHHHHHHHHHc------cC---ChhhH
Q 038022 7 FLINNLKEEEAGRLLKMMA---GDD-VENRELKSTAIDVARACG------GLPIALSTVAKALR------GK---SLHEW 67 (402)
Q Consensus 7 ~~l~~L~~~~a~~Lf~~~a---~~~-~~~~~l~~~~~~iv~~c~------GlPLal~~~g~~L~------~~---~~~~W 67 (402)
+++.+|+.++++++|...+ +.. ... .+....|++.|+ |.|..+..+..... +. +...+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v 286 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 286 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 8999999999999998765 221 122 356788999999 99976655543321 11 12223
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccC---C-CCCCHHHHHHHHhhc--CccCCCCcHH
Q 038022 68 KNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLM---G-NRILTLDLFKYSMGL--GIFKGVNKME 141 (402)
Q Consensus 68 ~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~f---p-~~i~~~~Li~~W~ae--g~i~~~~~~~ 141 (402)
..++..... ...+.-+++.||.++ +.++..++.+ . ..++..++...+..- ...... ..
T Consensus 287 ~~~~~~~~~-------------~~~~~~~l~~l~~~~-~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 350 (412)
T 1w5s_A 287 RKAVSENEA-------------ASIQTHELEALSIHE-LIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-PR- 350 (412)
T ss_dssp HHHHHHC-------------------CCSSSSSCHHH-HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-CC-
T ss_pred HHHHHHHhc-------------cchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-CC-
Confidence 333332110 224555778899984 8888877754 3 556666665544211 011100 00
Q ss_pred HHHHHHHHHHHHHHHhccccccC----CCCeEEccHHH
Q 038022 142 DARDKLYASVHELRDSCLLLEGD----SNEEFSMHDVV 175 (402)
Q Consensus 142 ~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~mhdlv 175 (402)
.......+++.|++.+++.... ..+++++|++.
T Consensus 351 -~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 351 -GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp -CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred -CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 1123456799999999996432 23345555443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.40 E-value=0.055 Score=51.01 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=69.1
Q ss_pred ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022 240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS 319 (402)
Q Consensus 240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~ 319 (402)
.+..+.+|+.+.+..+ ++. ++...|..+.+|+.+++.. .++.+.... +.++.+|+.+++..+ ++.+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~------I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~ 359 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF------IGEEAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPLS--LRKIGA 359 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE------ECTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECT
T ss_pred cccccccccccccccc-cce------echhhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECcc--ccEehH
Confidence 4566777887777654 443 6776788999999999975 588754444 789999999999753 777765
Q ss_pred ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022 320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL 364 (402)
Q Consensus 320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L 364 (402)
. ++..+++|+.+++.. .++.+... ..++++|+.+
T Consensus 360 ~-------aF~~C~~L~~i~lp~--~~~~~~~~--F~~c~~L~~I 393 (394)
T 4fs7_A 360 N-------AFQGCINLKKVELPK--RLEQYRYD--FEDTTKFKWI 393 (394)
T ss_dssp T-------TBTTCTTCCEEEEEG--GGGGGGGG--BCTTCEEEEE
T ss_pred H-------HhhCCCCCCEEEECC--CCEEhhhe--ecCCCCCcEE
Confidence 4 333488999998864 34444322 2445555543
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.49 E-value=0.31 Score=45.69 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=76.6
Q ss_pred cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH
Q 038022 223 MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI 297 (402)
Q Consensus 223 ~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i 297 (402)
+.+|..| .+++... -...+.+++.|+.+.+.. .+.. ++...|..+.+|+.++|.. +++.+.... +
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~------I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F 330 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITE------LPESVFAGCISLKSIDIPE--GITQILDDA-F 330 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCE------ECTTTTTTCTTCCEEECCT--TCCEECTTT-T
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC-cccc------cCceeecCCCCcCEEEeCC--cccEehHhH-h
Confidence 4455555 4444331 235678889999999964 4443 8888899999999999976 588754444 7
Q ss_pred hcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEee
Q 038022 298 GSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVC 367 (402)
Q Consensus 298 ~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~ 367 (402)
.++.+|+.+.|.. +++.+... ++..+++|+.+++.+.. ..+. .. ....+|+.+.+.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~~~--~~~~-~~--~~~~~L~~i~i~ 386 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSGSR--SQWN-AI--STDSGLQNLPVA 386 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESSCH--HHHH-TC--BCCCCC------
T ss_pred hCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECCce--eehh-hh--hccCCCCEEEeC
Confidence 8999999999964 36777653 33348889998887642 2221 11 344556655543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.36 E-value=0.096 Score=40.93 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022 246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC 285 (402)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c 285 (402)
+|+.|+|++|.++. +|...|..+++|++|+|+++
T Consensus 32 ~l~~L~Ls~N~l~~------l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTA------LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSS------CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCc------cChhhhhhccccCEEEecCC
Confidence 69999999999996 99888899999999999983
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.20 E-value=0.7 Score=41.80 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=41.0
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHc
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~ 60 (402)
..+.+.+++.+|...++.+.+......- -.+....+++.|.|.|-.+..+...+.
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4789999999999999999883211111 135678899999999998877766653
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.42 E-value=4.2 Score=34.24 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKAL 59 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L 59 (402)
..+++.+++.++..+++.+.+......-. .+....|++.|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46899999999999999998822111111 3567889999999999998776654
No 172
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.89 E-value=44 Score=30.31 Aligned_cols=134 Identities=9% Similarity=-0.022 Sum_probs=73.9
Q ss_pred ceEeccCCCHHHHHHHHHHhhC----CCCCCcchHHHHHHHHHHhC---CChH-HHHHHHHHH--c----cCChhhHHHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG----DDVENRELKSTAIDVARACG---GLPI-ALSTVAKAL--R----GKSLHEWKNS 70 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~----~~~~~~~l~~~~~~iv~~c~---GlPL-al~~~g~~L--~----~~~~~~W~~~ 70 (402)
..+.+.+++.++..++|.+.+. .....+ +....+++.|+ |.|. |+..+-... . .-+.+.++.+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 3789999999999999999872 122232 45667788887 9887 444443333 1 1234557666
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCCCCCCH-HHHHHHHhhcCccCCCCcHHHHHHHHHH
Q 038022 71 LRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILT-LDLFKYSMGLGIFKGVNKMEDARDKLYA 149 (402)
Q Consensus 71 l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp~~i~~-~~Li~~W~aeg~i~~~~~~~~~~~~~~~ 149 (402)
++... ...+..+++.|+.++ |..+...+.....-+. +.....-...| ..+. + ......
T Consensus 267 ~~~~~--------------~~~~~~~~~~l~~~~-~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~~-~----~~~~~~ 325 (384)
T 2qby_B 267 IVDYE--------------QERLIEAVKALPFHY-KLALRSLIESEDVMSAHKMYTDLCNKFK-QKPL-S----YRRFSD 325 (384)
T ss_dssp HHHHH--------------HHHHHHHHHSSCHHH-HHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCCC-C----HHHHHH
T ss_pred HHHHh--------------cchHHHHHHcCCHHH-HHHHHHHHHhcccChHHHHHHHHHHHcC-CCCC-C----HHHHHH
Confidence 66431 134556677888764 5444444441110000 01111111122 1111 1 234456
Q ss_pred HHHHHHHhccccc
Q 038022 150 SVHELRDSCLLLE 162 (402)
Q Consensus 150 ~l~~L~~~~ll~~ 162 (402)
+++.|.+++++..
T Consensus 326 ~l~~L~~~gli~~ 338 (384)
T 2qby_B 326 IISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHTTSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 7999999999964
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=53.96 E-value=65 Score=29.16 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=82.9
Q ss_pred eEeccCCCHHHHHHHHHHhhC----CCCCCcchHHHHHHHHHHh---------CCChHHHHHHHHHHc------cCC---
Q 038022 6 NFLINNLKEEEAGRLLKMMAG----DDVENRELKSTAIDVARAC---------GGLPIALSTVAKALR------GKS--- 63 (402)
Q Consensus 6 ~~~l~~L~~~~a~~Lf~~~a~----~~~~~~~l~~~~~~iv~~c---------~GlPLal~~~g~~L~------~~~--- 63 (402)
.+.+.+++.++..+++.+.+. ..... .+....+++.+ +|.|-.+..+..... +..
T Consensus 187 ~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~ 263 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIA 263 (389)
T ss_dssp EEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 689999999999999998872 22222 35678899999 788765544433221 211
Q ss_pred hhhHHHHHHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCC-----CCCCHHHHHHHHhh----cCcc
Q 038022 64 LHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG-----NRILTLDLFKYSMG----LGIF 134 (402)
Q Consensus 64 ~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp-----~~i~~~~Li~~W~a----eg~i 134 (402)
.+....+....... .+.-.++.|+.++ |..+...+.+. ..++...+...+.. .|..
T Consensus 264 ~~~v~~~~~~~~~~--------------~~~~~l~~l~~~~-~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 328 (389)
T 1fnn_A 264 PEDVRKSSKEVLFG--------------ISEEVLIGLPLHE-KLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER 328 (389)
T ss_dssp HHHHHHHHHHHSCC--------------CCHHHHHHSCHHH-HHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh--------------hHHHHHHcCCHHH-HHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC
Confidence 12233333332111 1222345577663 65555454321 14555555554422 2211
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccccccCC----C--Ce---E----EccHHHHHHHHHHHh
Q 038022 135 KGVNKMEDARDKLYASVHELRDSCLLLEGDS----N--EE---F----SMHDVVRDVAISVAC 184 (402)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~----~--~~---~----~mhdlv~~~a~~i~~ 184 (402)
. . + ......++++|.+++++..... + ++ + ..|++++.+...+..
T Consensus 329 ~-~-~----~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 329 P-R-V----HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp C-C-C----HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred C-C-C----HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 1 1 1 2345567999999999964322 1 22 2 245666666655543
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=52.13 E-value=81 Score=28.37 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=76.3
Q ss_pred ceEeccCCCHHHHHHHHHHhhC----CCCCCcchHHHHHHHHHHhC---CChH-HHHHHHHHHc-----cC---ChhhHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG----DDVENRELKSTAIDVARACG---GLPI-ALSTVAKALR-----GK---SLHEWK 68 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~----~~~~~~~l~~~~~~iv~~c~---GlPL-al~~~g~~L~-----~~---~~~~W~ 68 (402)
..+.+.+++.++..+++.+.+. .....+ +....+++.++ |.|- |+..+..+.. +. +.+.++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 3688999999999999998862 222333 34567777887 9994 3333333221 11 234466
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhc-cCC--CCCCHHHHHHHH----hhcCccCCCCcHH
Q 038022 69 NSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCS-LMG--NRILTLDLFKYS----MGLGIFKGVNKME 141 (402)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s-~fp--~~i~~~~Li~~W----~aeg~i~~~~~~~ 141 (402)
.+++.. ....+.-++..|+.++ +..+...+ ++. ..+...++.+.. -..| ..+.
T Consensus 271 ~a~~~~--------------~~~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 330 (387)
T 2v1u_A 271 SARAEI--------------ERDRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV---- 330 (387)
T ss_dssp HHHHHH--------------HHHHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC----
T ss_pred HHHHHH--------------hhchHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC----
Confidence 665543 1124555677888873 54444444 332 444455443332 1223 1111
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 038022 142 DARDKLYASVHELRDSCLLLE 162 (402)
Q Consensus 142 ~~~~~~~~~l~~L~~~~ll~~ 162 (402)
....+..+++.|...+++..
T Consensus 331 -~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 331 -TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp -CHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHhCCCeEE
Confidence 12345567999999999964
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=51.75 E-value=6.3 Score=32.87 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=32.3
Q ss_pred cCCCCCCCEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeeccc
Q 038022 241 KVALPNLEALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCE 312 (402)
Q Consensus 241 l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~ 312 (402)
+.+-+.|+.|+|+++ .+..-- ...+-. .+..-..|+.|+|++| .+....-. ..+..-+.|++|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~g-a~~la~-aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKER-IRSLIE-AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHH-HHHHHH-HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHHH-HHHHHH-HHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344556677777664 432100 000111 1334456777777763 55432111 113344567777777664
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.18 E-value=71 Score=27.95 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=36.9
Q ss_pred ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHH-HHHHHHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIA-LSTVAKA 58 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLa-l~~~g~~ 58 (402)
..+++.+++.++..+++...+......-+ .+....+++.|+|.|.. +..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 37899999999999999998721111111 25668899999999954 4444443
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=40.00 E-value=91 Score=27.97 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=72.3
Q ss_pred ceEeccCCCHHHHHHHHHHhhC----CCCCCcchHHHHHHHHHHhC---CChHHHHHH-HHHHc-----cC---ChhhHH
Q 038022 5 DNFLINNLKEEEAGRLLKMMAG----DDVENRELKSTAIDVARACG---GLPIALSTV-AKALR-----GK---SLHEWK 68 (402)
Q Consensus 5 ~~~~l~~L~~~~a~~Lf~~~a~----~~~~~~~l~~~~~~iv~~c~---GlPLal~~~-g~~L~-----~~---~~~~W~ 68 (402)
..+.+.+++.++..+++.+.+. ..... .+....+++.++ |.|..+..+ ..... +. +.+.++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 4789999999999999998762 12222 355666777777 999854333 32221 11 233455
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhcc-C--C-CCCCHHHHHHHHh--h--cCccCCCCcH
Q 038022 69 NSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSL-M--G-NRILTLDLFKYSM--G--LGIFKGVNKM 140 (402)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~-f--p-~~i~~~~Li~~W~--a--eg~i~~~~~~ 140 (402)
.++... ....+.-.+..+|..+ +..+...+. + . ..+...++.+... + .| +.+. .
T Consensus 267 ~a~~~~--------------~~~~~~~~~~~l~~~~-~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~-~- 328 (386)
T 2qby_A 267 MAKEEI--------------ERDRVRDIILTLPFHS-KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAV-T- 328 (386)
T ss_dssp HHHHHH--------------HHHHHHHHHHTSCHHH-HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCC-C-
T ss_pred HHHHHH--------------hhchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCC-C-
Confidence 554432 1234555667788763 554444442 1 1 2233433322221 1 12 1111 1
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 038022 141 EDARDKLYASVHELRDSCLLLE 162 (402)
Q Consensus 141 ~~~~~~~~~~l~~L~~~~ll~~ 162 (402)
......+++.|.+.+++..
T Consensus 329 ---~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 329 ---QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp ---HHHHHHHHHHHHHHTSEEE
T ss_pred ---HHHHHHHHHHHHhCCCEEE
Confidence 1334557899999999963
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=38.72 E-value=51 Score=26.71 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=37.7
Q ss_pred eEeccCCCHHHHHHHHHHhhC--CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 038022 6 NFLINNLKEEEAGRLLKMMAG--DDVENRELKSTAIDVARACGGLPIALSTVAKAL 59 (402)
Q Consensus 6 ~~~l~~L~~~~a~~Lf~~~a~--~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L 59 (402)
.+++.+++.++..+++.+.+. ..... .+....+++.++|.|..+..+...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 688999999999999999882 11122 3566788899999999765544443
No 179
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=35.16 E-value=18 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHccC
Q 038022 46 GGLPIALSTVAKALRGK 62 (402)
Q Consensus 46 ~GlPLal~~~g~~L~~~ 62 (402)
.-+|||..++++.+...
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 56999999999987643
No 180
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.78 E-value=46 Score=24.00 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=25.8
Q ss_pred CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeec
Q 038022 266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRF 310 (402)
Q Consensus 266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~ 310 (402)
+..+.|..+.+|+.+.+-. .++.+-... +.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~--~v~~Ig~~a-F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP--NIGLLYDGM-FSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT--TSSCCCTTS-STTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCC--chheEcHHH-HhccCCccEEEEcC
Confidence 5555666777777777765 465543333 56677777777654
Done!