BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038023
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2
Length = 304
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 136/272 (50%), Gaps = 34/272 (12%)
Query: 9 AQIFQQTSTEQYKKQFGEALYG----AGSDLIKSELS----AYGDKLLGSGSAFIGRYF- 59
Q+F TS+ K + G +G +L+ +S AYG L G + +
Sbjct: 32 TQLFDDTSSGVNKHEPGRVGKSPDVFSGQNLLSDPMSNLAMAYGSSLASHGKEMMDKNLD 91
Query: 60 -----SNPRYYFQVNDQYVQNKL--------KGHWMRATETVKGKFCYKPPIDDINAPNL 106
S +YYF V+ YV KL +W E + P DINAP+L
Sbjct: 92 RFIPISKLKYYFAVDTVYVGKKLGLLVFPYMHDNW----EVNYQQDTPVAPRFDINAPDL 147
Query: 107 YIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEI 165
YIP+M F T+V++AG LG +FSPE LG+Q ++ L+ + +VL + +L+++ + ++
Sbjct: 148 YIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSALVWLIIEVLAVLLSLYLVTVNTDL 207
Query: 166 LLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILV 220
+D+VA+SGY +V + + +VA ++ YY+ +W F + TL +KIL
Sbjct: 208 TTIDLVAFSGYKYVGMIVGVVAGLLFGRTGYYLALLWFCASIFVFTIRTLRLKILSEA-A 266
Query: 221 AEVRICEKHSSK-RHHLLLLVAIAQLPLLFWL 251
AE R+ ++ R +L + +A AQ ++WL
Sbjct: 267 AEGRLVRGTKNQLRMYLTMAIAAAQPVFMYWL 298
>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
Length = 300
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 23/256 (8%)
Query: 6 GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
G AQ F + +G +L G +++ + D+++ S +YY
Sbjct: 52 GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98
Query: 66 FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
F V+ YV K L +M V+ + P DINAP+LYIP+MAF T++++AG
Sbjct: 99 FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFITYILVAG 158
Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
LG +FSPE LG+Q ++ L + +VL + +L+++ + ++ +D+VA+SGY +V
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVG 218
Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
+ ++A ++ YYVV W F + TL +KIL V + + R +
Sbjct: 219 MISGVIAGLLFGNTGYYVVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278
Query: 236 LLLLVAIAQLPLLFWL 251
L + +A Q ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294
>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1
Length = 300
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 23/256 (8%)
Query: 6 GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
G AQ F + +G +L G +++ + D+++ S +YY
Sbjct: 52 GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98
Query: 66 FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
F V+ YV K L +M V+ + P DINAP+LYIP+MAF T++++AG
Sbjct: 99 FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFITYILVAG 158
Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
LG +FSPE LG+Q ++ L + +VL + +L+++ + ++ +D+VA+SGY +V
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVG 218
Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
+ +++ ++ YYVV W F + TL +KIL V + + R +
Sbjct: 219 MISGVISGLLFGKTGYYVVLSWCGISVVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278
Query: 236 LLLLVAIAQLPLLFWL 251
L + +A Q ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294
>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
Length = 300
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 23/256 (8%)
Query: 6 GTHAQIFQQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYY 65
G AQ F + +G +L G +++ + D+++ S +YY
Sbjct: 52 GIPAQAFLSEPMSNFAMAYGSSLASQGKEMMDKNI----DRIIP---------VSKIKYY 98
Query: 66 FQVNDQYVQNK---LKGHWMRATETVK-GKFCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
F V+ YV K L +M V+ + P DINAP+LYIP+MAF T++++AG
Sbjct: 99 FAVDTVYVGKKIGLLMFPYMHQDWEVRYQQDTPVAPRFDINAPDLYIPVMAFVTYILVAG 158
Query: 122 FFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVA 180
LG +FSPE LG+Q ++ L + +VL + +L+++ + ++ +D+VA++GY +V
Sbjct: 159 LALGTQSRFSPEILGMQASSALAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFTGYKYVG 218
Query: 181 VSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHH 235
+ +++ ++ YY+V W F + TL +KIL V + + R +
Sbjct: 219 MISGVISGLLFGKTGYYIVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMY 278
Query: 236 LLLLVAIAQLPLLFWL 251
L + +A Q ++WL
Sbjct: 279 LTMAIAAVQPIFMYWL 294
>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1
Length = 314
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 30/272 (11%)
Query: 10 QIFQQTSTEQYK-----KQFGEALYGAGS---------DLIKSELSAYGDKLLGSGSAFI 55
Q+F TS+ Q + + G Y A S D + + AYG L G +
Sbjct: 37 QLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELV 96
Query: 56 GRYFSN--P----RYYFQVNDQYVQNKLK----GHWMRATETVKGKFCYKPPIDDINAPN 105
+ P +YYF V+ YV KL + + E + P D+NAP+
Sbjct: 97 DKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPD 156
Query: 106 LYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGE 164
LYIP MAF T+V++AG LG +FSP+ LG+Q ++ L +VL + +L+++ + +
Sbjct: 157 LYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTD 216
Query: 165 ILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----FCMGTLFVKILKRIL 219
+ +D+VA+ GY +V + ++ ++ YY+V W F + TL +KIL
Sbjct: 217 LTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAA 276
Query: 220 VAEVRICEKHSSKRHHLLLLVAIAQLPLLFWL 251
V + + R +L + VA AQ L++WL
Sbjct: 277 AEGVPVRGARNQLRMYLTMAVAAAQPMLMYWL 308
>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2
Length = 311
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 15/226 (6%)
Query: 38 SELSAYGDKLLGSGSAFIGRYF--SNPRYYFQVNDQYVQNKLK----GHWMRATETVKGK 91
S L+A G +L+ I R+ S +YYF V+ YV KL + + E +
Sbjct: 83 SSLAAQGKELVDKN---IDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQ 139
Query: 92 FCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151
P DINAP+LYIP MAF T++++AG LG +FSP+ LG+Q ++ L +V+
Sbjct: 140 DTPVAPRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAWLTLEVV 199
Query: 152 LMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKS-----F 205
+ +L+++ + ++ +D+VA+ GY +V + ++ ++ YY+V W F
Sbjct: 200 AILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVF 259
Query: 206 CMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQLPLLFWL 251
+ TL +KIL + V + + R +L + VA AQ L++WL
Sbjct: 260 MIRTLRLKILAQAAAEGVPVRGARNQLRMYLTMAVAAAQPVLMYWL 305
>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1
Length = 293
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 63 RYYFQVNDQYVQNKLK----GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVV 118
+Y+F V+ YV KL + + E + PP D+NAP+LYIP MAF T+V+
Sbjct: 92 KYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVL 151
Query: 119 LAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYT 177
LAG LGI +FSPE LG+ + L+ + +VL + +++ ++ ++AYSGY
Sbjct: 152 LAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYK 211
Query: 178 FVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLL 237
+V + ++++ ++ YYV W S + V+ L+ + + +R L
Sbjct: 212 YVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAALGPDSMGGPAPRQRLQLY 271
Query: 238 LLVAIA--QLPLLFWL 251
L + A Q +++WL
Sbjct: 272 LTLGAAAFQPLIIYWL 287
>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1
Length = 307
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 115/246 (46%), Gaps = 38/246 (15%)
Query: 24 FGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFS--NPRYYFQVNDQYVQNKLK--- 78
+G L G D++ E I R+ S +Y+F V+ +YV KL
Sbjct: 76 YGSTLANQGKDIVNKE---------------INRFMSVNKLKYFFAVDTKYVMKKLLLLM 120
Query: 79 -GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGV 137
+ + E + P D+NAP+LYIP MAF T+++LAG LGI +FSPE LG+
Sbjct: 121 FPYTHQDWEVRYHRDTPLTPRHDVNAPDLYIPTMAFITYILLAGMALGIQKRFSPEVLGL 180
Query: 138 QFTNGLLCWLFQV-----LLMEATLHMLGDGEILLLDVVAYSGYTFVAVSIALVAKVITC 192
+ L+ + +V L T+H ++ D+VAYSGY +V + + + ++
Sbjct: 181 CASTALVWMIIEVLVMLLSLYLLTVHT----DLSTFDLVAYSGYKYVGMILTVFCGLLFG 236
Query: 193 GYCYYVVSVWKS-----FCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QL 245
YYV W S F + +L +KIL I A+ + R L + VA A Q
Sbjct: 237 SDGYYVALAWSSCALMFFIVRSLKMKILSSI-SADSMGAGASAKPRFRLYITVASAAFQP 295
Query: 246 PLLFWL 251
+++WL
Sbjct: 296 FIIYWL 301
>sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2
Length = 293
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 24 FGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPRYYFQVNDQYVQNKLK----G 79
+G ++ G D++ EL + S +Y+F V+ YV KL
Sbjct: 66 YGSSIASHGKDMVHKELHRFVS-------------VSKLKYFFAVDTAYVAKKLGLLVFP 112
Query: 80 HWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQF 139
+ + E + PP D+NAP+LYIP MAF T+V+LAG LGI +FSPE LG+
Sbjct: 113 YTHQNWEVQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCA 172
Query: 140 TNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYV 198
+ L+ + +VL + L++ ++ ++AYSGY +V + ++++ ++ YYV
Sbjct: 173 STALVWVVMEVLALLLGLYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYV 232
Query: 199 VSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QLPLLFWL 251
W S + V+ L+ + + +R L L + A Q +++WL
Sbjct: 233 ALAWTSSALMYFIVRSLRTAALGPDSMGGPVPRQRLQLYLTLGAAAFQPLIIYWL 287
>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1
Length = 293
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 15/232 (6%)
Query: 34 DLIKSELSAYGDKLLGSGSAFIGRYF------SNPRYYFQVNDQYVQNKLKGHWMRAT-E 86
D + + AYG + G + + + +Y+F V+ YV KL T +
Sbjct: 57 DPVANMAMAYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116
Query: 87 TVKGKFCYK---PPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGL 143
K ++ + PP D+NAP+LYIP MAF T+V+LAG LGI +FSPE LG+ + L
Sbjct: 117 NWKMQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTAL 176
Query: 144 LCWLFQVLLMEATLHMLGD--GEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSV 201
+ W+F +L L E+ ++AYSGY +V + ++++ ++ YYV
Sbjct: 177 V-WVFMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALA 235
Query: 202 WKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIA--QLPLLFWL 251
W S + V+ L+ + +R L L + A Q +++WL
Sbjct: 236 WTSSALMYFIVRSLRTAASGPDSMGGPAPRQRLQLYLTLGAAAFQPLIIYWL 287
>sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hrf1 PE=3 SV=1
Length = 293
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 35/259 (13%)
Query: 14 QTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFIGRYFSNPR--YYFQVNDQ 71
++T Q Q G+ AG + ++ G++ S R +YF V +
Sbjct: 50 NSATAQMGFQLGKNAVNAGQEYVEQNF---------------GKWLSTTRLHHYFTVTNS 94
Query: 72 YVQNKL--------KGHW---MRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLA 120
YV KL + W +R +E Y PP +D+N+P++YIPLMAF T ++L
Sbjct: 95 YVVAKLLLIIFPWRRRSWARKLRRSEINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLL 154
Query: 121 GFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFV 179
G+ F PE G++ + L + L ++L + +LD++A+SGY FV
Sbjct: 155 CALAGLQDDFQPELFGLRASKACAVVLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKFV 214
Query: 180 AVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAE------VRICEKHSSKR 233
+ + ++K+ + V ++ ++ LK ++ E I S+R
Sbjct: 215 GLILTSLSKLFEMPWVTRFVFLYMYLATAFFLLRSLKYAVLPESTMAINATITSHQRSRR 274
Query: 234 HHLLLLVAIAQLPLLFWLG 252
+ L +A +Q+ ++ L
Sbjct: 275 IYFLFFIAASQILFMYVLS 293
>sp|P53845|YIF1_YEAST Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1
Length = 314
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 27/210 (12%)
Query: 65 YFQVNDQYVQNKLK----------GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFG 114
YFQV+ +YV NKLK +W R ++ G F PP DD+N+P++Y+P+M
Sbjct: 107 YFQVSTRYVINKLKLILVPFLNGTKNWQRIMDS--GNFL--PPRDDVNSPDMYMPIMGLV 162
Query: 115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEIL---LLDVV 171
T++++ G+ G F+PE L + ++ L +L+++ L++L D +I L++++
Sbjct: 163 TYILIWNTQQGLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELL 222
Query: 172 AYSGYTFVAVSIALVAKVITCGYC------YYVVSVWKSFCMGTLFVKILKRILVAE--- 222
Y GY FV + +A + +T + +Y+ + F + ++ +L R +
Sbjct: 223 CYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDI 282
Query: 223 -VRICEKHSSKRHHLLLLVAIAQLPLLFWL 251
V I + K ++ L + +L WL
Sbjct: 283 HVSISKSTVKKCNYFLFVYGFIWQNVLMWL 312
>sp|Q6PEC3|YIF1B_RAT Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2
Length = 259
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 101/264 (38%), Gaps = 68/264 (25%)
Query: 10 QIFQQTSTEQYKKQFGEALYGA-GSDLIKSELS-----------AYGDKLLGSGSAFIGR 57
Q F TS+ + G+ G+ G SE + AYG L G + +
Sbjct: 36 QFFDDTSSAPSRGYGGQPSPGSLGYPTSSSEAAFLAAPMSNMAMAYGSSLAAQGKELVDK 95
Query: 58 YF------SNPRYYFQVNDQYVQNKLK----GHWMRATETVKGKFCYKPPIDDINAPNLY 107
S +YYF V+ YV KL + + E + P DINAP+LY
Sbjct: 96 NIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVAPRFDINAPDLY 155
Query: 108 IPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILL 167
IP MAF T++++AG LG + +G T GLL G+I
Sbjct: 156 IPAMAFITYILVAGLALGTQDRM----IGGVLT-GLLF-----------------GKI-- 191
Query: 168 LDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE 227
GY V +C + V F + TL +KIL + V +
Sbjct: 192 -------GYYLV------------LAWCCVSIFV---FMIRTLRLKILAQAAAEGVPVRG 229
Query: 228 KHSSKRHHLLLLVAIAQLPLLFWL 251
+ R +L + VA AQ L++WL
Sbjct: 230 ARNQLRMYLTMAVAAAQPVLMYWL 253
>sp|P27315|GP_PHV Envelope glycoprotein OS=Prospect Hill virus GN=GP PE=2 SV=1
Length = 1142
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 16 STEQYKKQFGEALYGAGSDLIKSELSAYGDKLLGSGSAFI-GRYFSNPR-------YYFQ 67
T + K + + +GAG +KS+L D L S + +I R NP ++FQ
Sbjct: 655 DTVEIKTGWTDTAHGAGVIPLKSDLEL--DFSLPSSATYIYRRDLQNPANEQERIPFHFQ 712
Query: 68 VNDQYVQNKLK--GHWMRATETVKGKF-CY 94
+ Q + +++ GHWM T +K F CY
Sbjct: 713 LQRQVIHAEIQNLGHWMDGTFNLKTSFHCY 742
>sp|Q58600|MT52_METJA Probable modification methylase MJ1200 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1200 PE=3 SV=1
Length = 366
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 13 QQTSTEQYKKQFGEALYGAGSDLIKSELSAYGDKL------LGSGSAFIGRYFSNPRYYF 66
++T + + G+ +Y G D+ E +A + LG G AFI YF
Sbjct: 231 EKTQPKTVIEAIGDLMY-KGRDVPNHEFAALPARFRKRVHKLGWGDAFI---------YF 280
Query: 67 QVNDQYVQNKLKGHWMRATETVKGK-FCYKPPIDDINAPNLYIPLMAFGTFVVLAG 121
+ ++ + N ++ H ++ ETV GK F P D + P LM++ + + AG
Sbjct: 281 KGANRRLGNYIRLHPLKLAETVMGKRFFIHPYEDRLLTPREQARLMSYPDYHLFAG 336
>sp|Q879Z5|NORM_XYLFT Probable multidrug resistance protein NorM OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=norM PE=3 SV=1
Length = 469
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 110 LMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATL----HMLGDGEI 165
LM G F+V +G G A + + LC++ + + EAT H +G ++
Sbjct: 271 LMEGGLFIV-TTLLIGRFGTDEIAAHQIALSVAQLCFMIPMGVAEATTVRIGHAVGRCDL 329
Query: 166 LLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKIL 215
L++ VA++GY V + L A V+ GY V + + +L K+L
Sbjct: 330 LVMRRVAWAGYAIVIGTQTLSASVLLLGYDVIVAAYTDDLVVASLASKLL 379
>sp|Q9PA34|NORM_XYLFA Probable multidrug resistance protein NorM OS=Xylella fastidiosa
(strain 9a5c) GN=norM PE=3 SV=1
Length = 469
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 110 LMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATL----HMLGDGEI 165
LM G F+V +G G A + + LC++ + + EAT H +G ++
Sbjct: 271 LMEGGLFIV-TTLLIGRFGTDEIAAHQIALSVAQLCFMIPMGVAEATTVRIGHAVGRCDL 329
Query: 166 LLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKIL 215
L++ VA++GY V + L A V+ GY V + + +L K+L
Sbjct: 330 LVMRRVAWAGYAIVIGTQTLSASVLLLGYDVIVAAYTDDLVVASLASKLL 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,739,926
Number of Sequences: 539616
Number of extensions: 4095260
Number of successful extensions: 9509
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9473
Number of HSP's gapped (non-prelim): 21
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)