Query 038023
Match_columns 256
No_of_seqs 134 out of 243
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3094 Predicted membrane pro 100.0 2.1E-74 4.6E-79 517.7 19.8 231 19-253 28-284 (284)
2 PF03878 YIF1: YIF1; InterPro 100.0 1.8E-73 3.8E-78 512.6 22.2 210 39-252 10-240 (240)
3 COG5197 Predicted membrane pro 100.0 4.9E-56 1.1E-60 392.4 17.8 207 41-251 56-283 (284)
4 KOG3114 Uncharacterized conser 98.6 1.8E-06 3.9E-11 80.2 14.3 146 60-219 78-244 (290)
5 PF04893 Yip1: Yip1 domain; I 97.0 0.013 2.9E-07 47.8 11.0 91 100-191 18-121 (172)
6 COG5080 YIP1 Rab GTPase intera 95.1 0.17 3.6E-06 45.7 9.1 101 102-213 92-198 (227)
7 KOG3103 Rab GTPase interacting 90.7 0.93 2E-05 41.7 7.0 102 101-213 114-221 (249)
8 KOG2946 Uncharacterized conser 81.3 21 0.00045 32.7 10.4 74 104-185 98-171 (234)
9 KOG2568 Predicted membrane pro 63.7 93 0.002 31.8 11.2 143 103-252 200-359 (518)
10 PF06679 DUF1180: Protein of u 62.7 9 0.00019 33.3 3.5 24 194-217 96-119 (163)
11 PF00689 Cation_ATPase_C: Cati 25.2 1.8E+02 0.0038 24.1 5.3 29 131-159 47-75 (182)
12 COG5522 Predicted integral mem 23.9 3.4E+02 0.0073 25.0 7.0 76 111-212 128-218 (236)
13 PF05512 AWPM-19: AWPM-19-like 21.3 2.5E+02 0.0053 24.1 5.3 52 110-161 50-109 (142)
14 PF07290 DUF1449: Protein of u 20.7 6E+02 0.013 22.7 8.0 56 130-185 1-69 (202)
No 1
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-74 Score=517.71 Aligned_cols=231 Identities=40% Similarity=0.762 Sum_probs=212.6
Q ss_pred ccCCccCccccccCchhHHHHHH---------HHHHHHHhhHHHH----HhhhcC--CCccceecChHHHHHHhc-----
Q 038023 19 QYKKQFGEALYGAGSDLIKSELS---------AYGDKLLGSGSAF----IGRYFS--NPRYYFQVNDQYVQNKLK----- 78 (256)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~---------~yG~~~~~~g~~y----~~~~~~--~lk~YF~V~nsYV~~KL~----- 78 (256)
|.+.|+||+..|.|+++.++++. +|||+++++|+|| ++||++ ++||||+|||+||.|||+
T Consensus 28 p~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfP 107 (284)
T KOG3094|consen 28 PTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFP 107 (284)
T ss_pred CCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEechHHHhhhheEEEee
Confidence 45567999998877665555444 9999999999999 666766 789999999999999999
Q ss_pred ---ccccccccccCCcccCCCCccCCCCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 038023 79 ---GHWMRATETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEA 155 (256)
Q Consensus 79 ---k~W~r~~e~~~g~~~~~pPr~DinaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~ 155 (256)
|+|+|+.|. +.|+|||+|+||||||||+|+|+||||++|+.+|++|+|+||.||+.+|+++++|++|++++|+
T Consensus 108 f~hk~W~~~~~~----~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~~~s~al~~v~le~l~l~l 183 (284)
T KOG3094|consen 108 FLHKDWTRIYER----ESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGILASKALAWVILEVLLLKL 183 (284)
T ss_pred ecCcchhhhhcc----cCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999883 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-CCCcchhheeeecCchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccCcc
Q 038023 156 TLHMLG-DGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRICE--KHSSK 232 (256)
Q Consensus 156 ~~Y~l~-~~~~~~lDlvaysGYKfV~i~v~ll~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~~~~--~~~~r 232 (256)
++|+++ +++.+++|++||+|||||++|++.+.+++++.+.||+++.|+++|.++||+||||+.+++|.++.+ .+++|
T Consensus 184 ~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~~yyi~~~yt~~a~gvFLlRSlK~~ll~~~~~~~~v~q~~r 263 (284)
T KOG3094|consen 184 GLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPYGYYIALAYTYLAFGVFLLRSLKRALLAESSMADPVPQSSR 263 (284)
T ss_pred HHheecccCCcchhHhhhhcccchHHHHHHHHhhheecchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCccchhhh
Confidence 999999 589999999999999999999999999999999999999999999999999999999999976543 34789
Q ss_pred chhhHHHHHHHHHHHHHHhcc
Q 038023 233 RHHLLLLVAIAQLPLLFWLGN 253 (256)
Q Consensus 233 ~~yfll~~a~~Q~~l~~wL~~ 253 (256)
|+||||++|++|+++++||++
T Consensus 264 ~~YfLf~ia~~Q~~~l~wLs~ 284 (284)
T KOG3094|consen 264 RLYFLFFIAAVQFLILYWLSN 284 (284)
T ss_pred hHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999974
No 2
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=100.00 E-value=1.8e-73 Score=512.62 Aligned_cols=210 Identities=40% Similarity=0.831 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhhHHHH----HhhhcC--CCccceecChHHHHHHhc--------ccccccccccCCcccCCCCccCCCCC
Q 038023 39 ELSAYGDKLLGSGSAF----IGRYFS--NPRYYFQVNDQYVQNKLK--------GHWMRATETVKGKFCYKPPIDDINAP 104 (256)
Q Consensus 39 ~~~~yG~~~~~~g~~y----~~~~~~--~lk~YF~V~nsYV~~KL~--------k~W~r~~e~~~g~~~~~pPr~DinaP 104 (256)
...||||+++++|+|| ++||++ .+||||||||+||+|||+ |+|+|+.| ++.++|||+|+|||
T Consensus 10 m~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~----~~~~~~Pr~DvNAP 85 (240)
T PF03878_consen 10 MAMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYE----QESYLPPREDVNAP 85 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccCCcccccc----ccCCCCchhhccCc
Confidence 4489999999999999 566766 799999999999999999 88999887 34699999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhheeeecCchHHHHHH
Q 038023 105 NLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSI 183 (256)
Q Consensus 105 DLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~-~~~~~~lDlvaysGYKfV~i~v 183 (256)
|||||+||++||||++|+.+|++|+||||.||.++|+|+++|++|++++|+++|+++ +++.|++|++||+|||||++|+
T Consensus 86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~ 165 (240)
T PF03878_consen 86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIIL 165 (240)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhc-----ccCccchhhHHHHHHHHHHHHHHhc
Q 038023 184 ALVAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVR-ICE-----KHSSKRHHLLLLVAIAQLPLLFWLG 252 (256)
Q Consensus 184 ~ll~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~-~~~-----~~~~r~~yfll~~a~~Q~~l~~wL~ 252 (256)
+++++++.+++.||++++|+++|+++|++||||+.++|+.. +++ ++++||+||||++|++|+|++||||
T Consensus 166 ~~l~~~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~i~~~~~~~~~~~~~~~~~~~r~yfL~~~a~~Q~~l~~wLt 240 (240)
T PF03878_consen 166 TLLASLLFGSWVYYIALLYTSFANAFFLLRSLKRVILPSPSSSYGSVSSSSQRKRRNYFLFFIAIVQPPLMFWLT 240 (240)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeehhHHHHHHHHHHHHHHhhC
Confidence 99999988899999999999999999999999999996433 222 4578999999999999999999996
No 3
>COG5197 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.9e-56 Score=392.35 Aligned_cols=207 Identities=28% Similarity=0.507 Sum_probs=186.4
Q ss_pred HHHHHHHHhhHHHHHhhhcC------CCccceecChHHHHHHhc--------ccccccccccCCcccCCCCccCCCCCcc
Q 038023 41 SAYGDKLLGSGSAFIGRYFS------NPRYYFQVNDQYVQNKLK--------GHWMRATETVKGKFCYKPPIDDINAPNL 106 (256)
Q Consensus 41 ~~yG~~~~~~g~~y~~~~~~------~lk~YF~V~nsYV~~KL~--------k~W~r~~e~~~g~~~~~pPr~DinaPDL 106 (256)
-+.||.++++++||++|-+. .+++||+|||+||.+||+ |+|+|. +..++|+|||||+|+|||
T Consensus 56 ~~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~----gd~eg~~pp~~d~nsPdm 131 (284)
T COG5197 56 NFIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRI----GDSEGFLPPRDDVNSPDM 131 (284)
T ss_pred HHHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccchhhhc----cCCCCCCCchhhcCCccc
Confidence 45899999999999877653 789999999999999999 888884 334569999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhheeeecCchHHHHHHHH
Q 038023 107 YIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG-DGEILLLDVVAYSGYTFVAVSIAL 185 (256)
Q Consensus 107 YIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~-~~~~~~lDlvaysGYKfV~i~v~l 185 (256)
|+|+|+|+||||+++..+|++|.|+||.||..+|++++...+|+++.|++||+++ +...+++|++||+|||||+++++-
T Consensus 132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~q 211 (284)
T COG5197 132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQ 211 (284)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 556679999999999999999999
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcccCccchhhHHHHHHHHHHHHHHh
Q 038023 186 VAKVITCGYCYYVVSVWKSFCMGTLFVKILKRILVAEVRI------CEKHSSKRHHLLLLVAIAQLPLLFWL 251 (256)
Q Consensus 186 l~~~l~~~~~yy~~~~y~~~a~~~FllRsLk~~il~e~~~------~~~~~~r~~yfll~~a~~Q~~l~~wL 251 (256)
+.+.+.-.|.--+...|..+|.++||+||||+.++++... ..++++||+||||++++.|..+||-|
T Consensus 212 L~k~~~Mp~v~~i~~~Ylyiaf~vFLlRSlK~~vl~~s~~~i~asis~~~r~rr~YfLF~i~i~Q~~~m~ll 283 (284)
T COG5197 212 LLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISKSTRKRRNYFLFVIFIWQNVLMWLL 283 (284)
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeeechhhhhheeeeeehHHHHHHHHHHhh
Confidence 9887667787778889999999999999999999998632 13457899999999999998777655
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.8e-06 Score=80.24 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=84.7
Q ss_pred CCCccceecChHHHHHHhcccccc-c--ccccCCcccCCCCccCCCCCccccchHHHHHHHHHHHHHH---------hhc
Q 038023 60 SNPRYYFQVNDQYVQNKLKGHWMR-A--TETVKGKFCYKPPIDDINAPNLYIPLMAFGTFVVLAGFFL---------GIN 127 (256)
Q Consensus 60 ~~lk~YF~V~nsYV~~KL~k~W~r-~--~e~~~g~~~~~pPr~DinaPDLYIPlMa~vTYILl~~~~~---------G~~ 127 (256)
+..|+|||||++-|++||+.+-.. + .|+. -+.||||.|.|...|-|-+.+... +.+
T Consensus 78 ~yyq~fFdVDt~qV~~Rl~~SliP~~~~~~~~------------~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~ 145 (290)
T KOG3114|consen 78 EYYQPFFDVDTAQVRKRLKESLIPRNYVRDQI------------QDNPDLYGPFWITATLVFALAISGNLATFIRNGTLK 145 (290)
T ss_pred HhhccccCCCHHHHHHHHHHhcCCcccccccc------------CCCccccccHHHHHHHHHHHHHcccHHHHHHhcccc
Confidence 367999999999999999944221 1 1211 157999999999999887665533 223
Q ss_pred C-----CCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhc---cCCCcchhheeeecCchHHHHHHHHHHHHHhcchhHHH
Q 038023 128 G-----KFSPEALGVQFTNGLLC-WLFQVLLMEATLHML---GDGEILLLDVVAYSGYTFVAVSIALVAKVITCGYCYYV 198 (256)
Q Consensus 128 g-----~F~PE~Lg~~~s~~l~~-~~~E~~i~k~~~Y~l---~~~~~~~lDlvaysGYKfV~i~v~ll~~~l~~~~~yy~ 198 (256)
| .|+ .+...++...+. ++++.++.-+..+.= +..-..++|+++.-||.-.-.+-+++..++-.++.=|+
T Consensus 146 g~~~g~~f~--~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wv 223 (290)
T KOG3114|consen 146 GTAYGYDFG--LVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWV 223 (290)
T ss_pred ceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHH
Confidence 3 244 222222222111 223443333333322 12234689999999999555555555555444545454
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038023 199 VSVWKSFCMGTLFVKILKRIL 219 (256)
Q Consensus 199 ~~~y~~~a~~~FllRsLk~~i 219 (256)
.-.-.....+.||.+++.-.+
T Consensus 224 l~~~~~~~S~~~L~~~l~p~~ 244 (290)
T KOG3114|consen 224 LVGTALGLSGTFLAGTLWPAV 244 (290)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 444444455677777776543
No 5
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=96.95 E-value=0.013 Score=47.80 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHhhcCCCCcc---------h-HHHHHHHH---HHHHHHHHHHHHHHHHhccCCCcc
Q 038023 100 DINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPE---------A-LGVQFTNG---LLCWLFQVLLMEATLHMLGDGEIL 166 (256)
Q Consensus 100 DinaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE---------~-Lg~~~s~~---l~~~~~E~~i~k~~~Y~l~~~~~~ 166 (256)
+.+.+|+|.|++++++.+..........+.+.++ . ++...... ++.+++-..+++..+.+++ ++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~ 96 (172)
T PF04893_consen 18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS 96 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 3467999999999999987777765444444433 1 11111111 2334444555555555565 7889
Q ss_pred hhheeeecCchHHHHHHHHHHHHHh
Q 038023 167 LLDVVAYSGYTFVAVSIALVAKVIT 191 (256)
Q Consensus 167 ~lDlvaysGYKfV~i~v~ll~~~l~ 191 (256)
+-|..+..||..++.++..+...+.
T Consensus 97 ~~~~~~~~~ya~~P~~~~~~~~~~~ 121 (172)
T PF04893_consen 97 FKETFSVVGYALIPLLLGSLISIIL 121 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777654
No 6
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=95.08 E-value=0.17 Score=45.73 Aligned_cols=101 Identities=22% Similarity=0.458 Sum_probs=66.8
Q ss_pred CCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHHH
Q 038023 102 NAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAV 181 (256)
Q Consensus 102 naPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~i 181 (256)
+.-||--|+. |++|-++.+-+++|= ..|. ..++..+-.+.+.+.+-+++..+++++.-++..||.+.++
T Consensus 92 ~d~DL~gPli----F~lL~sLfLsla~~s---hFgy----iy~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPl 160 (227)
T COG5080 92 ADCDLWGPLI----FILLYSLFLSLAGKS---HFGY----IYGISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPL 160 (227)
T ss_pred hcccccccHH----HHHHHHHHHHhcccc---eeeh----hhHHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHH
Confidence 5689999975 566667777777772 2222 2223333344455556667777899999999999999999
Q ss_pred HHHHHHHHHhcc-----hhHHH-HHHHHHHHHHHHHHH
Q 038023 182 SIALVAKVITCG-----YCYYV-VSVWKSFCMGTLFVK 213 (256)
Q Consensus 182 ~v~ll~~~l~~~-----~~yy~-~~~y~~~a~~~FllR 213 (256)
++.-+.+.+.+. +..+. ..+|+..|.+.++-+
T Consensus 161 v~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~ 198 (227)
T COG5080 161 VFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKS 198 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777776542 22222 266777776665543
No 7
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=0.93 Score=41.65 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=69.8
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHH
Q 038023 101 INAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVA 180 (256)
Q Consensus 101 inaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~ 180 (256)
.+.+||=-|+.. +|+-+..+=++||=|=- ....++++-.+-+.+.+-+|+.+++++....+..||.+.+
T Consensus 114 ~~d~DlaGPlvf----~L~f~~flLl~gKi~Fg-------yIygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLP 182 (249)
T KOG3103|consen 114 MKDTDLAGPLVF----CLLFGLFLLLAGKIHFG-------YIYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLP 182 (249)
T ss_pred ecCcccccchHH----HHHHHHHHHhcCceEEE-------EEeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHH
Confidence 367999999865 45556666677774322 2234555666666666666667899999999999999999
Q ss_pred HHHHHHHHHHhc--chhHHH----HHHHHHHHHHHHHHH
Q 038023 181 VSIALVAKVITC--GYCYYV----VSVWKSFCMGTLFVK 213 (256)
Q Consensus 181 i~v~ll~~~l~~--~~~yy~----~~~y~~~a~~~FllR 213 (256)
+++.-.++++.+ +..-|+ ..+|++-|.+-++++
T Consensus 183 lvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~ 221 (249)
T KOG3103|consen 183 LVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVS 221 (249)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877777654 333332 466777776666555
No 8
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.35 E-value=21 Score=32.72 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=52.1
Q ss_pred CccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhheeeecCchHHHHHH
Q 038023 104 PNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGDGEILLLDVVAYSGYTFVAVSI 183 (256)
Q Consensus 104 PDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~~~~~~lDlvaysGYKfV~i~v 183 (256)
=||..|+-..+-. ++++-..+.+.-. ..++..++++.+-.+++.+-.-+++ +++++..-++.+||--.+..+
T Consensus 98 wDlWGPl~~~~~l----a~iL~~s~~~~~~---~vFs~vf~i~wfG~~vvtln~kLLG-gnIs~fQsl~IlGYCLfPl~v 169 (234)
T KOG2946|consen 98 WDLWGPLFFCVFL----ALILSLSGSVKSA---SVFAVVFAILWFGAVVVTLNIKLLG-GNISFFQSLCILGYCLFPLVV 169 (234)
T ss_pred ccccchhHHHHHH----HHHHHhhcCcccc---hhHHHHHHHHHHHHHHHHHHHHHhC-CceeEEeehhhhhhcccHHHH
Confidence 4899997543333 3333333333322 5677777787777777777777787 789999999999999888777
Q ss_pred HH
Q 038023 184 AL 185 (256)
Q Consensus 184 ~l 185 (256)
+.
T Consensus 170 ~a 171 (234)
T KOG2946|consen 170 AA 171 (234)
T ss_pred HH
Confidence 74
No 9
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=63.72 E-value=93 Score=31.83 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=80.8
Q ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHhccCCCcchhh-----eeeecC
Q 038023 103 APNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWL--FQVLLMEATLHMLGDGEILLLD-----VVAYSG 175 (256)
Q Consensus 103 aPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~--~E~~i~k~~~Y~l~~~~~~~lD-----lvaysG 175 (256)
+|=|.+=---.+.|+|+..+..=..-+|--|+|-.+-.-..++.+ +|-++...=....|++..+..+ -+.-++
T Consensus 200 ~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~ 279 (518)
T KOG2568|consen 200 APLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAI 279 (518)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Confidence 344444333345677777777766778999999887765555554 6777777766667743222111 111122
Q ss_pred chHHHHHHHHHHHHHh-------cch---hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCccchhhHHHHHHHHH
Q 038023 176 YTFVAVSIALVAKVIT-------CGY---CYYVVSVWKSFCMGTLFVKILKRILVAEVRICEKHSSKRHHLLLLVAIAQL 245 (256)
Q Consensus 176 YKfV~i~v~ll~~~l~-------~~~---~yy~~~~y~~~a~~~FllRsLk~~il~e~~~~~~~~~r~~yfll~~a~~Q~ 245 (256)
=|=..-.+.+++++=. ++. .-=+..+|+.++-..+++|..... .+..++-+.++.+-.|+...
T Consensus 280 K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~-------se~~~~~~lf~~ip~ai~d~ 352 (518)
T KOG2568|consen 280 KKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNI-------SELSSLLILFAALPLAILDA 352 (518)
T ss_pred HHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCc-------ccccchhhHHHHHHHHHHHH
Confidence 2222222233333211 111 112356778888888888876521 12223446788888899999
Q ss_pred HHHHHhc
Q 038023 246 PLLFWLG 252 (256)
Q Consensus 246 ~l~~wL~ 252 (256)
.+++|..
T Consensus 353 ~f~~wIF 359 (518)
T KOG2568|consen 353 AFIYWIF 359 (518)
T ss_pred HHHHHHH
Confidence 8888864
No 10
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=62.70 E-value=9 Score=33.28 Aligned_cols=24 Identities=8% Similarity=0.229 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 038023 194 YCYYVVSVWKSFCMGTLFVKILKR 217 (256)
Q Consensus 194 ~~yy~~~~y~~~a~~~FllRsLk~ 217 (256)
...|++...+++++.+|++|+.|.
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRL 119 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888899999999999984
No 11
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=25.25 E-value=1.8e+02 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038023 131 SPEALGVQFTNGLLCWLFQVLLMEATLHM 159 (256)
Q Consensus 131 ~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~ 159 (256)
+.+.+......++...+..........+.
T Consensus 47 ~~~~~~~i~~~g~~~~~~~~~~f~~~~~~ 75 (182)
T PF00689_consen 47 NKRLLRRILIQGLIMAAACFFAFFLGLYI 75 (182)
T ss_dssp SHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred cHHhHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444444444443
No 12
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=23.87 E-value=3.4e+02 Score=24.99 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=47.6
Q ss_pred HHHHH--HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccC--C-----------CcchhheeeecC
Q 038023 111 MAFGT--FVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVLLMEATLHMLGD--G-----------EILLLDVVAYSG 175 (256)
Q Consensus 111 Ma~vT--YILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~~--~-----------~~~~lDlvaysG 175 (256)
|-++| .+.++++.+-.+.++.|..=|-..|... ..++-+.|++.|. + +.+++|+
T Consensus 128 lffitH~svfls~v~~~vhfreRpgksgl~~svl~------~~~lg~~~lfinrrLGtNYlylsk~P~~~sildv----- 196 (236)
T COG5522 128 LFFITHISVFLSAVILIVHFRERPGKSGLVMSVLV------AISLGIMCLFINRRLGTNYLYLSKEPESASILDV----- 196 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHH------HHHHHHHHHHHHHHhcCceeEeecCCCchhHHHH-----
Confidence 44444 4678899999999999988776555433 3344445555541 1 2233332
Q ss_pred chHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 038023 176 YTFVAVSIALVAKVITCGYCYYVVSVWKSFCMGTLFV 212 (256)
Q Consensus 176 YKfV~i~v~ll~~~l~~~~~yy~~~~y~~~a~~~Fll 212 (256)
.++|-+|++..=...|..+|++
T Consensus 197 ---------------lgpwp~Yivs~v~ilca~~f~l 218 (236)
T COG5522 197 ---------------LGPWPFYIVSEVLILCAVWFLL 218 (236)
T ss_pred ---------------hcCccHHHHHHHHHHHHHHHHH
Confidence 5678888877766667666654
No 13
>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].
Probab=21.26 E-value=2.5e+02 Score=24.07 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHH------HHhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038023 110 LMAFGTFVVLAGF------FLGING--KFSPEALGVQFTNGLLCWLFQVLLMEATLHMLG 161 (256)
Q Consensus 110 lMa~vTYILl~~~------~~G~~g--~F~PE~Lg~~~s~~l~~~~~E~~i~k~~~Y~l~ 161 (256)
.--|++|.|++|. ..|+++ ..++|-|...++.++..|.+-.+.+-+.|-=..
T Consensus 50 T~ffv~faLlAgVVG~aS~l~G~~h~r~W~~~sLaaAaa~a~iAW~lTlLAmGlACKeI~ 109 (142)
T PF05512_consen 50 TGFFVIFALLAGVVGAASVLAGLHHVRSWRSESLAAAAASALIAWALTLLAMGLACKEIH 109 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhHheee
Confidence 4567888888776 346554 378999999999999999999999988887554
No 14
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=20.72 E-value=6e+02 Score=22.68 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCcchHHHHHHHHHH--HHHHHHHHHHHHHHhcc--CC---------CcchhheeeecCchHHHHHHHH
Q 038023 130 FSPEALGVQFTNGLL--CWLFQVLLMEATLHMLG--DG---------EILLLDVVAYSGYTFVAVSIAL 185 (256)
Q Consensus 130 F~PE~Lg~~~s~~l~--~~~~E~~i~k~~~Y~l~--~~---------~~~~lDlvaysGYKfV~i~v~l 185 (256)
|.||.+--..+-+++ +-++|.+.+-++....+ .. +..+.+++.+.|-.-|++.+.+
T Consensus 1 ~a~~n~pf~~al~~vl~lg~lE~i~l~~G~s~s~~Ld~~ld~~d~~~~~~~~~~L~wL~vGkvPlLI~L 69 (202)
T PF07290_consen 1 FAPENLPFSIALALVLLLGVLEIIGLLFGLSLSGLLDADLDHDDDDSDGGFTQILSWLNVGKVPLLIWL 69 (202)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcccHhhcCCCCCcccccCCcchHhHHHHhccCccHHHHHH
Confidence 345554433333332 33367766666655532 01 2234555566666666655444
Done!