Query 038023
Match_columns 256
No_of_seqs 134 out of 243
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 14.3 65 0.0022 21.0 1.2 27 108-135 11-37 (41)
2 2veb_A Protoglobin; hemoprotei 14.2 4.5E+02 0.015 22.2 6.8 34 103-136 132-168 (195)
3 3o71_B Peptide of deleted in c 12.7 85 0.0029 18.6 1.3 11 98-108 6-16 (27)
4 3u5c_V S26, YS25, 40S ribosoma 8.3 88 0.003 23.5 0.3 6 104-109 9-14 (87)
5 3iz6_T 40S ribosomal protein S 8.1 77 0.0026 23.6 -0.1 12 105-116 10-21 (82)
6 2xzm_Z RPS21E; ribosome, trans 8.0 91 0.0031 23.9 0.3 6 104-109 24-29 (97)
7 1qbf_A Peptide YY, PYY; PP-fol 7.8 1.1E+02 0.0038 19.5 0.6 13 56-68 18-30 (37)
8 3ubc_A Hemoglobin-like flavopr 6.2 5.9E+02 0.02 18.6 4.2 107 35-151 8-129 (131)
9 1jeb_A Hemoglobin zeta chain; 5.9 6.8E+02 0.023 18.7 4.5 36 114-151 102-137 (142)
10 1out_A Hemoglobin I; heme, oxy 5.8 7E+02 0.024 18.9 4.5 37 113-151 102-138 (143)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=14.34 E-value=65 Score=21.03 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCcchH
Q 038023 108 IPLMAFGTFVVLAGFFLGINGKFSPEAL 135 (256)
Q Consensus 108 IPlMa~vTYILl~~~~~G~~g~F~PE~L 135 (256)
-|+++.+-..+.+|+...++. |-||.|
T Consensus 11 APVla~~w~~~tAg~lIEiNR-ffPD~L 37 (41)
T 1jb0_J 11 APVLAAIWMTITAGILIEFNR-FYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSCCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHH-hCcccc
Confidence 378888888888888888764 668776
No 2
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=14.24 E-value=4.5e+02 Score=22.25 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=17.7
Q ss_pred CCccccch---HHHHHHHHHHHHHHhhcCCCCcchHH
Q 038023 103 APNLYIPL---MAFGTFVVLAGFFLGINGKFSPEALG 136 (256)
Q Consensus 103 aPDLYIPl---Ma~vTYILl~~~~~G~~g~F~PE~Lg 136 (256)
-|-+|||. .+++.-|.....-..-++.-+||...
T Consensus 132 ~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~~~~~~~~ 168 (195)
T 2veb_A 132 ESVPNIGYRYLVAFIYPITATMKPFLARKGHTPEEVE 168 (195)
T ss_dssp CCCSCCCHHHHHHTHHHHHHTTHHHHTSSSCCHHHHH
T ss_pred CcccCCchHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 46678776 44443333333333334456787743
No 3
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=12.69 E-value=85 Score=18.59 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=8.7
Q ss_pred ccCCCCCcccc
Q 038023 98 IDDINAPNLYI 108 (256)
Q Consensus 98 r~DinaPDLYI 108 (256)
..|+..|||.|
T Consensus 6 ~kDlkppdlwi 16 (27)
T 3o71_B 6 QKDLRPPDLWI 16 (27)
T ss_pred cCCCCCcceee
Confidence 35788899987
No 4
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=8.25 E-value=88 Score=23.55 Aligned_cols=6 Identities=50% Similarity=1.198 Sum_probs=3.6
Q ss_pred Cccccc
Q 038023 104 PNLYIP 109 (256)
Q Consensus 104 PDLYIP 109 (256)
=|||||
T Consensus 9 VDLYiP 14 (87)
T 3u5c_V 9 VELYVP 14 (87)
T ss_dssp CSSCCC
T ss_pred EEEEcc
Confidence 366666
No 5
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=8.11 E-value=77 Score=23.63 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=6.4
Q ss_pred ccccchHHHHHH
Q 038023 105 NLYIPLMAFGTF 116 (256)
Q Consensus 105 DLYIPlMa~vTY 116 (256)
|||||=--=.|=
T Consensus 10 DLYiPRKCSaTN 21 (82)
T 3iz6_T 10 DLYVPRKCSATN 21 (82)
T ss_dssp SCHHHHHHHHHH
T ss_pred EEeccccccccC
Confidence 666665444433
No 6
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=8.02 E-value=91 Score=23.92 Aligned_cols=6 Identities=33% Similarity=0.922 Sum_probs=5.0
Q ss_pred Cccccc
Q 038023 104 PNLYIP 109 (256)
Q Consensus 104 PDLYIP 109 (256)
=|||||
T Consensus 24 VDLYiP 29 (97)
T 2xzm_Z 24 IDAYLP 29 (97)
T ss_dssp CSSSCC
T ss_pred EeEecc
Confidence 688988
No 7
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=7.85 E-value=1.1e+02 Score=19.47 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=8.0
Q ss_pred hhhcCCCccceec
Q 038023 56 GRYFSNPRYYFQV 68 (256)
Q Consensus 56 ~~~~~~lk~YF~V 68 (256)
.+|.+.||+|.++
T Consensus 18 a~Y~~~Lr~Yinl 30 (37)
T 1qbf_A 18 SRYYASLRHYLNL 30 (37)
T ss_dssp TTTTTGGGHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666654
No 8
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=6.23 E-value=5.9e+02 Score=18.63 Aligned_cols=107 Identities=20% Similarity=0.060 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhhc---CCCccceecChHHHHHHhc-------ccccccccccCC-----cccCCCCcc
Q 038023 35 LIKSELSAYGDKLLGSGSAFIGRYF---SNPRYYFQVNDQYVQNKLK-------GHWMRATETVKG-----KFCYKPPID 99 (256)
Q Consensus 35 ~~~~~~~~yG~~~~~~g~~y~~~~~---~~lk~YF~V~nsYV~~KL~-------k~W~r~~e~~~g-----~~~~~pPr~ 99 (256)
.+++......+..-+-|.+.+.|.| |.+|.||.-|..-=.+|+. ++=.. .+.... +.... +.
T Consensus 8 ~i~~sw~~v~~~~~~~g~~fy~rlf~~~P~~k~~F~~d~~~h~~~l~~al~~~v~~ld~-~~~l~~~l~~L~~~H~--~~ 84 (131)
T 3ubc_A 8 LIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDN-LEGLIPTLQDLGRRHK--QY 84 (131)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGCCSCHHHHHHHHHHHHHHHHHTGGG-GGGGHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhChHHHHHccccHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH--Hc
Confidence 3444444444444555666677776 4889999876544444554 11000 000000 00000 01
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 038023 100 DINAPNLYIPLMAFGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151 (256)
Q Consensus 100 DinaPDLYIPlMa~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~ 151 (256)
. -.|+-| |+ +-=.|+..+...+...|+||+- .++.-+...+.+++
T Consensus 85 g-V~p~~f-~~---~~~~Ll~~l~~~lg~~~t~e~~--~AW~~~~~~va~~~ 129 (131)
T 3ubc_A 85 G-VVDSHY-PL---VGDCLLKSIQEYLGQGFTEEAK--AAWTKVYGIAAQVM 129 (131)
T ss_dssp T-CCTTHH-HH---HHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHHHH
T ss_pred C-CCHHHH-HH---HHHHHHHHHHHHhCccCCHHHH--HHHHHHHHHHHHHH
Confidence 1 134444 22 3345666777767678999976 55555555555444
No 9
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=5.92 E-value=6.8e+02 Score=18.66 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 038023 114 GTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151 (256)
Q Consensus 114 vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~ 151 (256)
+.=+|+..+...+...|+||.. .++..+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~~~~~~v~~~l 137 (142)
T 1jeb_A 102 LSHCLLVTLAARFPADFTAEAH--AAWDKFLSVVSSVL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 3445666776666678999976 55555555555544
No 10
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=5.77 E-value=7e+02 Score=18.86 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 038023 113 FGTFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151 (256)
Q Consensus 113 ~vTYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~ 151 (256)
.+.=+|+..+...+...|+||+. .++.-+...+.+++
T Consensus 102 ~~~~~Ll~~l~~~lg~~~t~e~~--~AW~k~~~~va~~l 138 (143)
T 1out_A 102 ILSHNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 138 (143)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 34556777777777778999987 45555545554443
Done!