Query 038023
Match_columns 256
No_of_seqs 134 out of 243
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 11:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la2 g.39.1.3 (A:37-66) Fou 11.6 15 0.0011 20.8 -0.9 14 92-105 12-25 (30)
2 d2i9wa2 g.74.1.1 (A:1-39) Hypo 9.5 61 0.0044 19.1 1.4 14 95-108 13-26 (39)
3 d1cqxa1 a.1.1.2 (A:1-150) Flav 7.0 3.7E+02 0.027 18.6 6.2 41 35-75 9-52 (150)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 6.4 1.6E+02 0.011 16.2 2.1 12 113-124 3-14 (30)
5 d1outa_ a.1.1.2 (A:) Hemoglobi 5.1 3.9E+02 0.028 18.3 4.5 34 116-151 104-137 (142)
6 d1xq5a_ a.1.1.2 (A:) Hemoglobi 4.9 3.4E+02 0.025 18.6 4.1 34 116-151 104-137 (142)
7 d2aa1b1 a.1.1.2 (B:1-146) Hemo 4.6 4E+02 0.029 18.3 4.2 33 116-150 108-140 (146)
8 d1outb_ a.1.1.2 (B:) Hemoglobi 4.5 3.7E+02 0.027 18.7 4.0 33 115-149 107-139 (146)
9 d1jb0j_ f.23.18.1 (J:) Subunit 4.5 1.4E+02 0.01 17.8 1.2 26 109-135 12-37 (41)
10 d1cg5b_ a.1.1.2 (B:) Hemoglobi 4.4 3.9E+02 0.028 18.5 4.1 22 114-135 101-122 (141)
No 1
>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.56 E-value=15 Score=20.77 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=12.0
Q ss_pred ccCCCCccCCCCCc
Q 038023 92 FCYKPPIDDINAPN 105 (256)
Q Consensus 92 ~~~~pPr~DinaPD 105 (256)
.+|+.-|+||-.||
T Consensus 12 rgflterddilc~d 25 (30)
T d1x4la2 12 RGFLTERDDILCPD 25 (30)
T ss_dssp SCCEECSSSEECHH
T ss_pred eeccccccceeccc
Confidence 46899999999987
No 2
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=9.51 E-value=61 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=11.8
Q ss_pred CCCccCCCCCcccc
Q 038023 95 KPPIDDINAPNLYI 108 (256)
Q Consensus 95 ~pPr~DinaPDLYI 108 (256)
.|..+||.+|=||-
T Consensus 13 np~~~~is~pllyq 26 (39)
T d2i9wa2 13 NPALNAVSTPLLYQ 26 (39)
T ss_dssp CTTCCCSSCCCBGG
T ss_pred CcccccccchhHHH
Confidence 47889999999984
No 3
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=7.05 E-value=3.7e+02 Score=18.59 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhhcC---CCccceecChHHHHH
Q 038023 35 LIKSELSAYGDKLLGSGSAFIGRYFS---NPRYYFQVNDQYVQN 75 (256)
Q Consensus 35 ~~~~~~~~yG~~~~~~g~~y~~~~~~---~lk~YF~V~nsYV~~ 75 (256)
+++.......++.-+-|...+.|+|. ..|.+|.-++.-...
T Consensus 9 lik~sw~~~~~~~~~~~~~ff~rlF~~~P~~~~~F~~~~~~~~~ 52 (150)
T d1cqxa1 9 IVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFNMAHQEQGQ 52 (150)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGTSCCSCCCHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHCHhHHHHhhhhhhhhHH
Confidence 56666655665556666666777764 788898766544333
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.36 E-value=1.6e+02 Score=16.17 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 038023 113 FGTFVVLAGFFL 124 (256)
Q Consensus 113 ~vTYILl~~~~~ 124 (256)
-+||+++.+.+.
T Consensus 3 ~i~yv~ifac~i 14 (30)
T d2axtt1 3 TITYVFIFACII 14 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehHHHHHHHH
Confidence 355655544433
No 5
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=5.08 E-value=3.9e+02 Score=18.31 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 038023 116 FVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151 (256)
Q Consensus 116 YILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~ 151 (256)
=+|+..+...+.+.|+||.- .|+.-+...+.+++
T Consensus 104 ~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1outa_ 104 HNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 137 (142)
T ss_dssp HHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 34455556666678999876 45544444444443
No 6
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}
Probab=4.88 E-value=3.4e+02 Score=18.62 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 038023 116 FVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQVL 151 (256)
Q Consensus 116 YILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~~ 151 (256)
=+|+..+...+.+.|+||.- .|+.-+...+.+++
T Consensus 104 ~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1xq5a_ 104 HCILVLLAVKFPKDFTPEVH--ISYDKFFSALARAL 137 (142)
T ss_dssp HHHHHHHHHHCGGGCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHH--HHHHHHHHHHHHHH
Confidence 45566666777788999975 55555544444443
No 7
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=4.58 E-value=4e+02 Score=18.31 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHH
Q 038023 116 FVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQV 150 (256)
Q Consensus 116 YILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E~ 150 (256)
=+|+..+...+.+.|+||.- .|+.-+.-.+.+.
T Consensus 108 ~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~i~~~ 140 (146)
T d2aa1b1 108 DCLTIVVAARFGSAFTGEVQ--AAFQKFMAVVVSS 140 (146)
T ss_dssp HHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccCCHHHH--HHHHHHHHHHHHH
Confidence 35666677777778999876 4544444444433
No 8
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=4.55 E-value=3.7e+02 Score=18.66 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHH
Q 038023 115 TFVVLAGFFLGINGKFSPEALGVQFTNGLLCWLFQ 149 (256)
Q Consensus 115 TYILl~~~~~G~~g~F~PE~Lg~~~s~~l~~~~~E 149 (256)
.=+|+..+...+.++||||.- .++.-+.-.+..
T Consensus 107 ~~~ll~~l~~~lg~~fT~e~~--~AW~k~~~~v~~ 139 (146)
T d1outb_ 107 ADVLTIVIAAKFGASFTPEIQ--ATWQKFMKVVVA 139 (146)
T ss_dssp HHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccCCHHHH--HHHHHHHHHHHH
Confidence 345666667777778999865 455444444433
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.54 E-value=1.4e+02 Score=17.81 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCcchH
Q 038023 109 PLMAFGTFVVLAGFFLGINGKFSPEAL 135 (256)
Q Consensus 109 PlMa~vTYILl~~~~~G~~g~F~PE~L 135 (256)
|+.+.+=+.+.+|+..-++ ||=||.|
T Consensus 12 PVla~~w~~~tAG~lIEiN-RFfPD~L 37 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIEFN-RFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-hhCchhh
Confidence 6777777777777777664 4556654
No 10
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=4.45 E-value=3.9e+02 Score=18.54 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcCCCCcchH
Q 038023 114 GTFVVLAGFFLGINGKFSPEAL 135 (256)
Q Consensus 114 vTYILl~~~~~G~~g~F~PE~L 135 (256)
+.=+|+..+...+.++|+||.-
T Consensus 101 ~g~~ll~~l~~~lg~~ft~e~~ 122 (141)
T d1cg5b_ 101 LGQTFMVELALHYKKTFRPKEH 122 (141)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHH
T ss_pred HHHHHHHHHHHHcCccCCHHHH
Confidence 4456777778788888999976
Done!