BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038024
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 19 ITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGD--V 76
+T ++ +S AH+IG C T RLYNF G G DP ++PS+ L+ TCP N
Sbjct: 157 LTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFT 216
Query: 77 NVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSF 136
+ + +D + V D ++ +L SD L + +A + + L+ ++
Sbjct: 217 PITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLT-----AW 271
Query: 137 EADFVESIVKMGHIGVKTGQQGHVRRLCA 165
+ F +++VKMG I V TG QG +R C+
Sbjct: 272 ASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 18 NITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVN 77
N+ + + +S AHT G C + RL+NF G D + S + L+ CP G+ N
Sbjct: 152 NLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSN 211
Query: 78 VRLPIDRGSERVFDKQILQNIKDGFAVLESDSRL-NDDIITNA---IIDSYLGILSPIFG 133
+ P+DR + FD +N+ +G +L SD L + D+ N ++++Y S F
Sbjct: 212 ITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFF- 270
Query: 134 PSFEADFVESIVKMGHIGVKTGQQGHVRRLC 164
DF ++++MG+I G G VR C
Sbjct: 271 ----RDFTCAMIRMGNI--SNGASGEVRTNC 295
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + +D +
Sbjct: 167 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 166 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 280
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 281 MDRMGNITPLTGTQGQIRLNC 301
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 166 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 280
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 281 MDRMGNITPLTGTQGQIRLNC 301
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 167 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 166 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 280
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 281 MDRMGNITPLTGTQGQIRLNC 301
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 167 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 167 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 166 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 280
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 281 MDRMGNITPLTGTQGQIRLNC 301
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 167 LSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S AHT G C RL+NF G DP +N + + L+ CPQNG + +D +
Sbjct: 166 LSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLST 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL--NDDIITNAIIDSYLGILSPIFGPSFEADFVESI 144
FD N++ +L+SD L T AI+ S+ + F F +S+
Sbjct: 226 PDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQA-----FAQSM 280
Query: 145 VKMGHIGVKTGQQGHVRRLC 164
+ MG+I TG G +R C
Sbjct: 281 INMGNISPLTGSNGEIRLDC 300
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 31 HTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGSERVF 90
HT G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D + +F
Sbjct: 170 HTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIF 229
Query: 91 DKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKM 147
D + N+++ +++SD L + T ++ S+ F FVE++ +M
Sbjct: 230 DNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEAMDRM 284
Query: 148 GHIGVKTGQQGHVRRLC 164
G+I TG QG +R C
Sbjct: 285 GNITPLTGTQGQIRLNC 301
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S H+ G C F+ RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 166 LSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 225
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 226 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 280
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 281 MDRMGNITPLTGTQGQIRLNC 301
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C + RLYNF G DP +N +++ L+ CP NG+++ + D +
Sbjct: 167 LSGGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRT 226
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL---NDDIITNAIIDSYLGILSPIFGPSFEADFVES 143
+FD + N+++ +++SD L + T ++ S+ F FVE+
Sbjct: 227 PTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-----FVEA 281
Query: 144 IVKMGHIGVKTGQQGHVRRLC 164
+ +MG+I TG QG +R C
Sbjct: 282 MDRMGNITPLTGTQGQIRLNC 302
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 11 LSQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATC 70
+S S T ++ +S AHTIG C R+YN + I+P++ L+A C
Sbjct: 149 ISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN-------ESNIDPTYAKSLQANC 201
Query: 71 PQ-NGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILS 129
P GD N+ P D + FD N+++ +L SD +L + + T++ + +Y +
Sbjct: 202 PSVGGDTNLS-PFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAA 260
Query: 130 PIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLC 164
+F DF +++KMG++ TG G +R C
Sbjct: 261 -----TFNTDFGNAMIKMGNLSPLTGTSGQIRTNC 290
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
IS HTIG C RL FP DP I+P+F+ LK TCP G + R +D +
Sbjct: 175 ISGGHTIGLAHCSSFEDRL---FPR--PDPTISPTFLSRLKRTCPAKG-TDRRTVLDVRT 228
Query: 87 ERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVK 146
VFD + ++ + + SD L + IT I++ + F F SI K
Sbjct: 229 PNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFF-----EQFGVSIGK 283
Query: 147 MGHIGVKTGQQGHVRRLCA 165
MG + V+T QG VRR C+
Sbjct: 284 MGQMRVRTSDQGEVRRNCS 302
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 27 ISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRGS 86
+S HT G C RLYNF G DP +N +++ L+A CPQN + +D +
Sbjct: 165 LSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLST 224
Query: 87 ERVFDKQILQNIKDGFAVLESDSRL--NDDIITNAIIDSYLGILSPIFGPSFEADFVESI 144
FD + N+ +L+SD L T I++S+ + F ++F S+
Sbjct: 225 PDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFF-----SNFRVSM 279
Query: 145 VKMGHIGVKTGQQGHVRRLC 164
+KMG+IGV TG +G +R C
Sbjct: 280 IKMGNIGVLTGDEGEIRLQC 299
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
Query: 12 SQVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCP 71
S+ S + + +S AHT G C + RL+NF G DP +N + + L+ CP
Sbjct: 152 SKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCP 211
Query: 72 QNGDVNVRLPIDRGSERVFDKQILQNIKDGFAVLESDSRL--NDDIITNAIIDSYLGILS 129
Q G + +D + FD N++ +L+SD L T AI+ S+ +
Sbjct: 212 QKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQT 271
Query: 130 PIFGPSFEADFVESIVKMGHIGVKTGQQGHVRRLC 164
F F +S++ MG+I TG G +R C
Sbjct: 272 LFF-----QAFAQSMINMGNISPLTGSSGEIRLDC 301
>pdb|2W31|A Chain A, Globin Domain Of Geobacter Sulfurreducens Globin-Coupled
Sensor
pdb|2W31|B Chain B, Globin Domain Of Geobacter Sulfurreducens Globin-Coupled
Sensor
Length = 162
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 106 ESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIGVKTGQQGH 159
E+ L +D++ + ++ +F S++ ++ ++ K+GH V+ G H
Sbjct: 48 ETAEFLKEDLVLQKLKQTHQDWFVSLFAGSYDNRYIHNLQKIGHAHVRVGLNAH 101
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 245
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 93 QILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGPSFEADFVESIVKMGHIG 151
++L K+G L SD L D + ++D Y F AD+ E+ K+ +G
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFF-----ADYAEAHQKLSELG 257
>pdb|2HH2|A Chain A, Solution Structure Of The Fourth Kh Domain Of Ksrp
Length = 107
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 64 VELKATCPQNGDVNVRLPIDRGSERVFD--KQILQ 96
VE+ P NGD N +L I RGS + D KQ+++
Sbjct: 40 VEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 74
>pdb|1MTC|A Chain A, Glutathione Transferase Mutant Y115f
pdb|1MTC|B Chain B, Glutathione Transferase Mutant Y115f
Length = 217
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 107 SDSRLNDDIITNAIIDSYLGILSPIFGPSFEA---DFVESI 144
+ R+ DI+ N ++D+ + ++ F P FE +F+++I
Sbjct: 90 EEERIRADIVENQVMDNRMQLIMLCFNPDFEKQKPEFLKTI 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,982,442
Number of Sequences: 62578
Number of extensions: 202235
Number of successful extensions: 455
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 37
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)