Query 038024
Match_columns 168
No_of_seqs 116 out of 1138
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.8E-59 3.9E-64 401.8 12.8 164 3-168 158-324 (324)
2 cd00693 secretory_peroxidase H 100.0 7.9E-56 1.7E-60 376.8 12.7 159 3-167 138-298 (298)
3 cd00649 catalase_peroxidase_1 100.0 3.6E-36 7.9E-41 263.4 11.6 142 4-158 213-401 (409)
4 PLN02608 L-ascorbate peroxidas 100.0 3.2E-36 6.9E-41 255.1 10.3 120 3-164 131-256 (289)
5 PLN02879 L-ascorbate peroxidas 100.0 4.2E-33 9.1E-38 232.3 9.0 109 4-154 135-249 (251)
6 cd00691 ascorbate_peroxidase A 100.0 5E-33 1.1E-37 232.2 9.2 109 4-154 134-252 (253)
7 PF00141 peroxidase: Peroxidas 100.0 2.3E-33 5E-38 231.2 6.6 111 3-126 118-229 (230)
8 cd00692 ligninase Ligninase an 100.0 1.9E-32 4.2E-37 235.6 10.5 121 3-168 145-287 (328)
9 PLN02364 L-ascorbate peroxidas 100.0 1.6E-32 3.4E-37 228.8 9.0 109 3-153 133-248 (250)
10 TIGR00198 cat_per_HPI catalase 100.0 1.5E-31 3.3E-36 247.2 11.4 138 4-154 222-404 (716)
11 PRK15061 catalase/hydroperoxid 100.0 2.4E-31 5.1E-36 245.1 11.5 139 4-155 226-411 (726)
12 cd00314 plant_peroxidase_like 100.0 1.6E-28 3.5E-33 204.2 8.6 106 4-149 130-255 (255)
13 cd08200 catalase_peroxidase_2 99.7 1.1E-17 2.3E-22 142.1 7.1 101 7-151 166-296 (297)
14 cd08201 plant_peroxidase_like_ 99.7 2.7E-17 5.9E-22 137.9 8.3 112 3-148 139-263 (264)
15 TIGR00198 cat_per_HPI catalase 99.5 2.2E-14 4.8E-19 133.6 6.8 101 7-151 579-709 (716)
16 PRK15061 catalase/hydroperoxid 99.5 3.5E-14 7.5E-19 132.0 6.8 100 8-151 592-721 (726)
17 COG0376 KatG Catalase (peroxid 99.4 1E-12 2.2E-17 118.6 8.8 133 4-149 238-414 (730)
18 COG0376 KatG Catalase (peroxid 83.4 3 6.6E-05 39.1 6.0 35 113-151 690-725 (730)
19 KOG0400 40S ribosomal protein 64.5 2.9 6.4E-05 32.2 0.7 32 6-37 31-64 (151)
20 PF11895 DUF3415: Domain of un 62.5 6.8 0.00015 27.5 2.2 17 136-152 3-19 (80)
21 PF04225 OapA: Opacity-associa 31.0 21 0.00045 24.9 0.6 26 9-34 11-37 (85)
22 COG4950 Uncharacterized protei 29.0 38 0.00082 27.6 1.8 28 2-29 130-158 (193)
23 PHA03420 E4 protein; Provision 25.2 34 0.00074 26.0 0.8 17 87-103 12-28 (137)
24 PF04844 Ovate: Transcriptiona 24.7 56 0.0012 21.6 1.7 13 137-149 5-17 (59)
25 PLN02705 beta-amylase 22.9 69 0.0015 30.7 2.6 27 136-162 392-424 (681)
26 PF06478 Corona_RPol_N: Corona 22.6 28 0.00061 30.5 -0.0 43 112-155 150-195 (355)
27 PHA02591 hypothetical protein; 22.6 68 0.0015 22.6 1.9 27 3-29 43-70 (83)
28 PF13024 DUF3884: Protein of u 21.5 62 0.0013 22.5 1.5 29 1-29 39-69 (77)
29 TIGR01568 A_thal_3678 uncharac 21.2 71 0.0015 21.6 1.7 15 135-149 9-23 (66)
30 PF13521 AAA_28: AAA domain; P 21.1 24 0.00053 26.5 -0.7 13 25-37 2-14 (163)
31 PF08069 Ribosomal_S13_N: Ribo 21.1 32 0.0007 22.8 0.0 20 6-25 31-51 (60)
32 PF15656 Tox-HDC: Toxin with a 21.0 43 0.00094 25.2 0.7 28 9-38 15-44 (119)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.8e-59 Score=401.77 Aligned_cols=164 Identities=40% Similarity=0.708 Sum_probs=151.2
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCccC
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGG-GSDPGINPSFVVELKATCPQNGDVNVRL 80 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 80 (168)
.|++++++|+ .|++|||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+.+|++.||..++.+..+
T Consensus 158 ~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~ 237 (324)
T PLN03030 158 GFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRI 237 (324)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccc
Confidence 5789999999 9999999999999999999999999999999999999875 5899999999999999999644434578
Q ss_pred cCCCCCchhchHHHHHHhhcCcccccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCCCCc
Q 038024 81 PIDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQQGH 159 (168)
Q Consensus 81 ~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~~Ge 159 (168)
+||+.||.+|||+||+||++++|||+|||+|+.|++|+++|++||.. +..++ .|+++|++||+|||+|+||||.+||
T Consensus 238 ~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~--~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GE 315 (324)
T PLN03030 238 ALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGV--RGLAGLNFNVEFGRSMVKMSNIGVKTGTNGE 315 (324)
T ss_pred cCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcc--cccchhhhHHHHHHHHHHHccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999970 00026 8999999999999999999999999
Q ss_pred ccccCccCC
Q 038024 160 VRRLCAAFS 168 (168)
Q Consensus 160 IR~~C~~vn 168 (168)
||++|++||
T Consensus 316 IRk~C~~vN 324 (324)
T PLN03030 316 IRKVCSAIN 324 (324)
T ss_pred eeccccccC
Confidence 999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.9e-56 Score=376.81 Aligned_cols=159 Identities=35% Similarity=0.655 Sum_probs=153.1
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCc
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLP 81 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 81 (168)
-|..++++|+ .|+++||+.+|||+||||||||++||.+|.+|||||+|++++||+|++.|+..|+..||..++.+..++
T Consensus 138 ~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 217 (298)
T cd00693 138 SPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVP 217 (298)
T ss_pred CcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCcccc
Confidence 3678999999 999999999999999999999999999999999999999999999999999999999997655667889
Q ss_pred CCCCCchhchHHHHHHhhcCcccccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCCCCcc
Q 038024 82 IDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQQGHV 160 (168)
Q Consensus 82 lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~~GeI 160 (168)
||+.||.+|||+||++|+.++|+|+|||+|+.|++|+++|+.||. || .|+++|++||+|||+|+|+||.+|||
T Consensus 218 lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~------d~~~F~~~Fa~Am~Kl~~l~v~tg~~Gei 291 (298)
T cd00693 218 LDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAA------NQDAFFRDFAAAMVKMGNIGVLTGSQGEI 291 (298)
T ss_pred CCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhh------CHHHHHHHHHHHHHHHhhcCCccCCCCcc
Confidence 999999999999999999999999999999999999999999999 99 99999999999999999999999999
Q ss_pred cccCccC
Q 038024 161 RRLCAAF 167 (168)
Q Consensus 161 R~~C~~v 167 (168)
|++|++|
T Consensus 292 R~~C~~~ 298 (298)
T cd00693 292 RKNCRVV 298 (298)
T ss_pred CCccccC
Confidence 9999975
No 3
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.6e-36 Score=263.40 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=128.1
Q ss_pred CCCChHHHH-HHHHhCCCccchhhh-ccccccccccCccccccccccCCCCCCCCCCCHHHHHHHH--hhCCCCCC-CCc
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEI-STAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELK--ATCPQNGD-VNV 78 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaL-sGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~--~~Cp~~~~-~~~ 78 (168)
|..++++|+ .|++|||+.+||||| |||||||++||..|.+||. +||.+++.++..|+ +.||...+ .+.
T Consensus 213 P~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~ 285 (409)
T cd00649 213 PLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIEQQGLGWKNSYGTGKGKDTI 285 (409)
T ss_pred CccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHHHHhhcccccCCCCCCCCCc
Confidence 567899999 999999999999999 5999999999999999983 59999999999995 89997533 344
Q ss_pred cCcCC---CCCchhchHHHHHHhhc------------------------------------CcccccchhhhhcCcchHH
Q 038024 79 RLPID---RGSERVFDKQILQNIKD------------------------------------GFAVLESDSRLNDDIITNA 119 (168)
Q Consensus 79 ~~~lD---~~Tp~~FDn~Yy~~l~~------------------------------------~~glL~SD~~L~~d~~T~~ 119 (168)
...+| ..||.+|||+||++|+. ++++|+||++|+.|++|++
T Consensus 286 ~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~ 365 (409)
T cd00649 286 TSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEK 365 (409)
T ss_pred cccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHH
Confidence 56789 47999999999999998 6699999999999999999
Q ss_pred HHHHHhcccCCCCCc-chHHHHHHHHHHh--cCCCCCCCCCC
Q 038024 120 IIDSYLGILSPIFGP-SFEADFVESIVKM--GHIGVKTGQQG 158 (168)
Q Consensus 120 ~V~~~a~~~~~~~~~-~F~~~Fa~amvKM--g~i~vltG~~G 158 (168)
+|+.||. |+ .||++|++||+|| +.++|++--.|
T Consensus 366 iV~~yA~------d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 366 ISRRFLE------NPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred HHHHHhc------CHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 9999999 99 9999999999999 78999885544
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.2e-36 Score=255.07 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=108.7
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCc
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLP 81 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 81 (168)
-|+.++++|+ .|+++||+.+|||+||||||||++||. |+ +|.| |
T Consensus 131 ~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~----r~-g~~g-----~------------------------- 175 (289)
T PLN02608 131 DAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE----RS-GFDG-----P------------------------- 175 (289)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc----CC-CCCC-----C-------------------------
Confidence 4778999999 999999999999999999999999994 65 3321 1
Q ss_pred CCCCCchhchHHHHHHhhcC--ccc--ccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCCCC
Q 038024 82 IDRGSERVFDKQILQNIKDG--FAV--LESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKTGQ 156 (168)
Q Consensus 82 lD~~Tp~~FDn~Yy~~l~~~--~gl--L~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vltG~ 156 (168)
.+ .||.+|||+||++|+.+ +|+ |+|||+|+.|++|+++|+.||. || .|+++|++||+|||+|+|+||+
T Consensus 176 ~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~------~~~~F~~~Fa~Am~Km~~lgvltg~ 248 (289)
T PLN02608 176 WT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAK------DEDAFFRDYAESHKKLSELGFTPPS 248 (289)
T ss_pred CC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhh------CHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 01 58999999999999999 798 7999999999999999999999 99 9999999999999999999999
Q ss_pred CCcccccC
Q 038024 157 QGHVRRLC 164 (168)
Q Consensus 157 ~GeIR~~C 164 (168)
+||+.+..
T Consensus 249 ~Ge~~~~~ 256 (289)
T PLN02608 249 SAFKKKST 256 (289)
T ss_pred CCcccccC
Confidence 99998764
No 5
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.2e-33 Score=232.25 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=97.8
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCcC
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPI 82 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 82 (168)
|+.++++|+ .|+++||+.+||||||||||||++||. | ++|.|+ +
T Consensus 135 p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~----r-~g~~g~------------------------------~ 179 (251)
T PLN02879 135 ATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE----R-SGFEGA------------------------------W 179 (251)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc----c-ccCCCC------------------------------C
Confidence 678999999 999999999999999999999999995 4 343211 2
Q ss_pred CCCCchhchHHHHHHhhcC--ccc--ccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCCC
Q 038024 83 DRGSERVFDKQILQNIKDG--FAV--LESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVKT 154 (168)
Q Consensus 83 D~~Tp~~FDn~Yy~~l~~~--~gl--L~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vlt 154 (168)
| .||.+|||+||++|+.+ +|+ |+|||+|+.|++|+++|+.||. || .|+++|++||+||++|+|..
T Consensus 180 d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~------d~~~F~~~Fa~Am~KL~~lg~~~ 249 (251)
T PLN02879 180 T-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAA------DEDAFFEDYTEAHLKLSELGFAD 249 (251)
T ss_pred C-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhh------CHHHHHHHHHHHHHHHHccCCCC
Confidence 3 58999999999999999 898 6799999999999999999999 99 99999999999999999853
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=99.98 E-value=5e-33 Score=232.22 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=98.2
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCcC
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPI 82 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 82 (168)
|..++++|+ .|++|||+.+|||+||||||||++||.. ++|.|+ +
T Consensus 134 p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~-----~~~~g~---~--------------------------- 178 (253)
T cd00691 134 ASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKER-----SGYDGP---W--------------------------- 178 (253)
T ss_pred CCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccC-----CCCCCC---C---------------------------
Confidence 567899999 9999999999999999999999999953 233221 1
Q ss_pred CCCCchhchHHHHHHhhcCcc--------cccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCC
Q 038024 83 DRGSERVFDKQILQNIKDGFA--------VLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVK 153 (168)
Q Consensus 83 D~~Tp~~FDn~Yy~~l~~~~g--------lL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vl 153 (168)
..||.+|||+||++|+.++| +|+|||+|+.|++|+++|+.||. |+ .|+++|++||+||++|+|.
T Consensus 179 -~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~------~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 179 -TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAK------DQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred -CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCCC
Confidence 14999999999999999999 99999999999999999999999 99 9999999999999999986
Q ss_pred C
Q 038024 154 T 154 (168)
Q Consensus 154 t 154 (168)
.
T Consensus 252 ~ 252 (253)
T cd00691 252 F 252 (253)
T ss_pred C
Confidence 3
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=99.98 E-value=2.3e-33 Score=231.21 Aligned_cols=111 Identities=31% Similarity=0.555 Sum_probs=99.5
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCc
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLP 81 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 81 (168)
.|..++++|+ .|+++||+.+||||||||||||++||.+|. ||| + .+||+|++.|+.+ .| ..++.+ .++
T Consensus 118 ~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~ 186 (230)
T PF00141_consen 118 SPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVP 186 (230)
T ss_dssp TTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEE
T ss_pred ccccccchhhhhhhccccchhhhcceecccccccceecccc-ccc-c----cccccccccccee---cc-CCCccc-ccc
Confidence 4788999999 999999999999999999999999999999 999 4 5699999999988 89 433333 788
Q ss_pred CCCCCchhchHHHHHHhhcCcccccchhhhhcCcchHHHHHHHhc
Q 038024 82 IDRGSERVFDKQILQNIKDGFAVLESDSRLNDDIITNAIIDSYLG 126 (168)
Q Consensus 82 lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~T~~~V~~~a~ 126 (168)
+| ||.+|||+||++|++++|+|.|||+|+.|++|+++|+.||.
T Consensus 187 ~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~ 229 (230)
T PF00141_consen 187 LD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQ 229 (230)
T ss_dssp SS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHH
T ss_pred cc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhc
Confidence 99 99999999999999999999999999999999999999997
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=99.98 E-value=1.9e-32 Score=235.60 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=107.4
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCc
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLP 81 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 81 (168)
-|+.++++|+ .|++|||+.+|||+||||||||++|. .||+|+ ..+
T Consensus 145 ~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p 190 (328)
T cd00692 145 EPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTP 190 (328)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCC---------------CCCCCC-------------------CCC
Confidence 3788999999 99999999999999999999999982 377764 146
Q ss_pred CCCCCchhchHHHHHHhh-cCcc-------------------cccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHH
Q 038024 82 IDRGSERVFDKQILQNIK-DGFA-------------------VLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADF 140 (168)
Q Consensus 82 lD~~Tp~~FDn~Yy~~l~-~~~g-------------------lL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~F 140 (168)
+| .||.+|||+||+|++ .+++ +|+||++|+.|++|+.+|+.||. || .|+++|
T Consensus 191 ~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~------dq~~f~~~F 263 (328)
T cd00692 191 FD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVN------NQAKMNAAF 263 (328)
T ss_pred CC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhc------CHHHHHHHH
Confidence 88 599999999999987 5666 39999999999999999999999 99 999999
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCccCC
Q 038024 141 VESIVKMGHIGVKTGQQGHVRRLCAAFS 168 (168)
Q Consensus 141 a~amvKMg~i~vltG~~GeIR~~C~~vn 168 (168)
++||+||++|+|. .....+|+.|+
T Consensus 264 a~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 264 AAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred HHHHHHHHcCCCC----cchhccCcccC
Confidence 9999999999987 34788999875
No 9
>PLN02364 L-ascorbate peroxidase 1
Probab=99.97 E-value=1.6e-32 Score=228.84 Aligned_cols=109 Identities=23% Similarity=0.371 Sum_probs=97.2
Q ss_pred CCCCChHHHH-HHHHh-CCCccchhhhccccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccC
Q 038024 3 HYLIDISELS-QVSRY-NITLCKIHEISTAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRL 80 (168)
Q Consensus 3 ~~~~~~~~li-~F~~k-Gl~~~dlVaLsGaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 80 (168)
.|+.++++|+ .|+++ ||+.+|||+||||||||++|| .|+ +|.|+
T Consensus 133 ~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~----------------------------- 178 (250)
T PLN02364 133 DATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA----------------------------- 178 (250)
T ss_pred CCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccC----CCC-CCCCC-----------------------------
Confidence 5788999999 99975 999999999999999999999 455 33210
Q ss_pred cCCCCCchhchHHHHHHhhcC--ccccc--chhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCCCC
Q 038024 81 PIDRGSERVFDKQILQNIKDG--FAVLE--SDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIGVK 153 (168)
Q Consensus 81 ~lD~~Tp~~FDn~Yy~~l~~~--~glL~--SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~vl 153 (168)
.+ .||.+|||+||++|+.+ +|+|. |||+|+.|++|+.+|+.||. |+ .|+++|++||+|||+|++-
T Consensus 179 -~~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~------~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 179 -WT-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAA------DEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred -CC-CCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhh------CHHHHHHHHHHHHHHHHccCCC
Confidence 11 58999999999999999 89976 99999999999999999999 99 9999999999999999974
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=1.5e-31 Score=247.16 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=123.3
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhc-cccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCC---CCCc
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEIS-TAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNG---DVNV 78 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLs-GaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~---~~~~ 78 (168)
|..++++|+ .|+++|||.+|||||+ ||||||++||.+|.+|| ++||++++.|++.|+..||... +...
T Consensus 222 P~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~~gLg~~c~~~~g~g~dt~ 294 (716)
T TIGR00198 222 PLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEEQGLGWHNQYGKGVGRDTM 294 (716)
T ss_pred CCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHHHHHhcccCCCCCCCCCCcc
Confidence 567899999 9999999999999995 99999999999999998 2799999999999999998532 2233
Q ss_pred cCcCC---CCCchhchHHHHHHhhcC----------------------------------cccccchhhhhcCcchHHHH
Q 038024 79 RLPID---RGSERVFDKQILQNIKDG----------------------------------FAVLESDSRLNDDIITNAII 121 (168)
Q Consensus 79 ~~~lD---~~Tp~~FDn~Yy~~l~~~----------------------------------~glL~SD~~L~~d~~T~~~V 121 (168)
...+| ..||.+|||+||+||+.. +++|+||++|..|++|+++|
T Consensus 295 ~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iV 374 (716)
T TIGR00198 295 TSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKIS 374 (716)
T ss_pred cccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHH
Confidence 56788 579999999999999975 78999999999999999999
Q ss_pred HHHhcccCCCCCc-chHHHHHHHHHHhcC--CCCCC
Q 038024 122 DSYLGILSPIFGP-SFEADFVESIVKMGH--IGVKT 154 (168)
Q Consensus 122 ~~~a~~~~~~~~~-~F~~~Fa~amvKMg~--i~vlt 154 (168)
+.||. |+ .|+++|++||+||++ +|++.
T Consensus 375 e~yA~------d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 375 RRFLR------EPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred HHHhc------CHHHHHHHHHHHHHHHcccccCchh
Confidence 99999 99 999999999999984 55554
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=2.4e-31 Score=245.14 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=123.9
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhc-cccccccccCccccccccccCCCCCCCCCCCHHHHHHHH--hhCCCCC-CCCc
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEIS-TAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELK--ATCPQNG-DVNV 78 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLs-GaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~--~~Cp~~~-~~~~ 78 (168)
|..++.+|+ .|++|||+.+|||||+ ||||+|++||..|.+|| ++||.+++.++..|. +.||.+. ..+.
T Consensus 226 P~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~ 298 (726)
T PRK15061 226 PLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAPIEEQGLGWKNSYGSGKGADTI 298 (726)
T ss_pred cccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCHHHHHhccccccCCCCCCCCCc
Confidence 667899999 9999999999999995 99999999999999998 369999999999985 8999743 3344
Q ss_pred cCcCC---CCCchhchHHHHHHhhcC------------------------------------cccccchhhhhcCcchHH
Q 038024 79 RLPID---RGSERVFDKQILQNIKDG------------------------------------FAVLESDSRLNDDIITNA 119 (168)
Q Consensus 79 ~~~lD---~~Tp~~FDn~Yy~~l~~~------------------------------------~glL~SD~~L~~d~~T~~ 119 (168)
...+| ..||.+|||+||++|+.+ .++|+||++|..||++++
T Consensus 299 tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~ 378 (726)
T PRK15061 299 TSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEK 378 (726)
T ss_pred cccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHH
Confidence 56788 579999999999999985 689999999999999999
Q ss_pred HHHHHhcccCCCCCc-chHHHHHHHHHHhc--CCCCCCC
Q 038024 120 IIDSYLGILSPIFGP-SFEADFVESIVKMG--HIGVKTG 155 (168)
Q Consensus 120 ~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg--~i~vltG 155 (168)
+|+.||. |+ .|+++|++||+||. .+|++.-
T Consensus 379 iV~~fA~------d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 379 ISRRFLE------NPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred HHHHHhc------CHHHHHHHHHHHHHHHcccCCCchhh
Confidence 9999999 99 99999999999994 4776653
No 12
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.95 E-value=1.6e-28 Score=204.19 Aligned_cols=106 Identities=24% Similarity=0.311 Sum_probs=97.3
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhc-ccccc-ccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccC
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEIS-TAHTI-GTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRL 80 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLs-GaHTi-G~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 80 (168)
|+.++++++ .|+++||+.+|||||+ ||||| |++||..+..|+ |
T Consensus 130 ~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~------------------------~---------- 175 (255)
T cd00314 130 ETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEG------------------------S---------- 175 (255)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCccc------------------------C----------
Confidence 345799999 9999999999999999 99999 999999887765 2
Q ss_pred cCCCCCchhchHHHHHHhhcCc----------------ccccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHH
Q 038024 81 PIDRGSERVFDKQILQNIKDGF----------------AVLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVES 143 (168)
Q Consensus 81 ~lD~~Tp~~FDn~Yy~~l~~~~----------------glL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~a 143 (168)
.+|..||.+|||+||++|+.++ ++|+||+.|+.|++|+.+|+.||. ++ .|+++|++|
T Consensus 176 ~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~------~~~~f~~~Fa~a 249 (255)
T cd00314 176 GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYAS------DQEKFFEDFAKA 249 (255)
T ss_pred CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHh------CHHHHHHHHHHH
Confidence 2355799999999999999988 999999999999999999999999 99 999999999
Q ss_pred HHHhcC
Q 038024 144 IVKMGH 149 (168)
Q Consensus 144 mvKMg~ 149 (168)
|+||++
T Consensus 250 ~~Km~~ 255 (255)
T cd00314 250 WIKMVN 255 (255)
T ss_pred HHHHcC
Confidence 999984
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.72 E-value=1.1e-17 Score=142.10 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=81.9
Q ss_pred ChHHHH-HHHHhCCCccchhhhcccc-ccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCcCCC
Q 038024 7 DISELS-QVSRYNITLCKIHEISTAH-TIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDR 84 (168)
Q Consensus 7 ~~~~li-~F~~kGl~~~dlVaLsGaH-TiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~ 84 (168)
..+.|+ .|.++||++.|||||+||| ++|..|-.+ + .|. + .
T Consensus 166 ~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-----~--~G~------------------------------w-T 207 (297)
T cd08200 166 PEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-----K--HGV------------------------------F-T 207 (297)
T ss_pred HHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-----C--CCC------------------------------C-c
Confidence 346788 9999999999999999997 688866321 1 010 1 1
Q ss_pred CCchhchHHHHHHhhcCc--------------------c-----cccchhhhhcCcchHHHHHHHhcccCCCCC--c-ch
Q 038024 85 GSERVFDKQILQNIKDGF--------------------A-----VLESDSRLNDDIITNAIIDSYLGILSPIFG--P-SF 136 (168)
Q Consensus 85 ~Tp~~FDn~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~T~~~V~~~a~~~~~~~~--~-~F 136 (168)
.+|.+|||.||+||+.-. | .+.+|..|.+|++.+++|+.||. | + +|
T Consensus 208 ~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~------dd~~~~F 281 (297)
T cd08200 208 DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYAS------DDAQEKF 281 (297)
T ss_pred CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhc------ccchhHH
Confidence 368999999999999510 1 16789999999999999999999 8 8 99
Q ss_pred HHHHHHHHHHhcCCC
Q 038024 137 EADFVESIVKMGHIG 151 (168)
Q Consensus 137 ~~~Fa~amvKMg~i~ 151 (168)
|++|++|++|+.++.
T Consensus 282 ~~DF~~A~~Klmeld 296 (297)
T cd08200 282 VKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998864
No 14
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.71 E-value=2.7e-17 Score=137.91 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=86.3
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhcc-ccccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccC
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEIST-AHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRL 80 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsG-aHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 80 (168)
.|+.++++|+ .|++|||+.+|||+||| |||||++||..|.++. +|.- ..+...
T Consensus 139 ~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~---------~~g~----------------~~~~~~ 193 (264)
T cd08201 139 EPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIV---------PPGS----------------VPDTVL 193 (264)
T ss_pred CCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhc---------CCcc----------------ccCCCC
Confidence 4788999999 99999999999999995 9999999999887664 1110 001234
Q ss_pred cCCCCCchhchHHHHHHhhcCcc----------cccchhhhhcCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhc
Q 038024 81 PIDRGSERVFDKQILQNIKDGFA----------VLESDSRLNDDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMG 148 (168)
Q Consensus 81 ~lD~~Tp~~FDn~Yy~~l~~~~g----------lL~SD~~L~~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg 148 (168)
++| .||.+|||+||.+++.+.. -+.||-.++.... ..-++..| ++ .|.+.=+..+.||-
T Consensus 194 p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~-n~t~~~l~-------~~~~f~~~c~~~~~~mi 263 (264)
T cd08201 194 QFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDG-NVTMNELA-------SPDTFQKTCADILQRMI 263 (264)
T ss_pred CCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCc-cHHHHHhc-------ChHHHHHHHHHHHHHHh
Confidence 677 6999999999999998752 4678888886542 22445554 57 89999999999984
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.51 E-value=2.2e-14 Score=133.64 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=81.6
Q ss_pred ChHHHH-HHHHhCCCccchhhhccc-cccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCcCCC
Q 038024 7 DISELS-QVSRYNITLCKIHEISTA-HTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDR 84 (168)
Q Consensus 7 ~~~~li-~F~~kGl~~~dlVaLsGa-HTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~ 84 (168)
..+.|+ .|..+||++.|||||+|| |++|+.|-.++ .| ++-
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G------------------------------~~T- 620 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HG------------------------------VFT- 620 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------CC------------------------------CCc-
Confidence 445677 999999999999999999 59999875321 01 011
Q ss_pred CCchhchHHHHHHhhcC----------------------c-ccc--cchhhhhcCcchHHHHHHHhcccCCCCCc---ch
Q 038024 85 GSERVFDKQILQNIKDG----------------------F-AVL--ESDSRLNDDIITNAIIDSYLGILSPIFGP---SF 136 (168)
Q Consensus 85 ~Tp~~FDn~Yy~~l~~~----------------------~-glL--~SD~~L~~d~~T~~~V~~~a~~~~~~~~~---~F 136 (168)
.+|.+|||.||+||+.- . .++ .+|..|.+|++.+++|+.||. |+ +|
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~------dd~~~~F 694 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQ------DDAREKF 694 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhc------ccccchH
Confidence 36899999999999861 1 122 679999999999999999999 74 99
Q ss_pred HHHHHHHHHHhcCCC
Q 038024 137 EADFVESIVKMGHIG 151 (168)
Q Consensus 137 ~~~Fa~amvKMg~i~ 151 (168)
++||++|+.|+.+++
T Consensus 695 ~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 695 VKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998876
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.49 E-value=3.5e-14 Score=131.99 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=80.8
Q ss_pred hHHHH-HHHHhCCCccchhhhcccc-ccccccCccccccccccCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccCcCCCC
Q 038024 8 ISELS-QVSRYNITLCKIHEISTAH-TIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVELKATCPQNGDVNVRLPIDRG 85 (168)
Q Consensus 8 ~~~li-~F~~kGl~~~dlVaLsGaH-TiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~ 85 (168)
.+.|+ .|..+||++.|||||+||| ++|..|-.++ .| ++ ..
T Consensus 592 e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G------------------------------~~-T~ 633 (726)
T PRK15061 592 EELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG------------------------------VF-TD 633 (726)
T ss_pred HHHHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC------------------------------CC-cC
Confidence 36777 9999999999999999997 7788663210 01 01 13
Q ss_pred CchhchHHHHHHhhcC----------cc-------------c--ccchhhhhcCcchHHHHHHHhcccCCCCC--c-chH
Q 038024 86 SERVFDKQILQNIKDG----------FA-------------V--LESDSRLNDDIITNAIIDSYLGILSPIFG--P-SFE 137 (168)
Q Consensus 86 Tp~~FDn~Yy~~l~~~----------~g-------------l--L~SD~~L~~d~~T~~~V~~~a~~~~~~~~--~-~F~ 137 (168)
.|.+|||.||+||+.- .+ + +.+|..|.+|++.|++|+.||. | + +|+
T Consensus 634 ~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~------dd~~~kF~ 707 (726)
T PRK15061 634 RPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYAS------DDAKEKFV 707 (726)
T ss_pred CCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhc------ccchhHHH
Confidence 6899999999999941 11 1 4789999999999999999999 8 8 999
Q ss_pred HHHHHHHHHhcCCC
Q 038024 138 ADFVESIVKMGHIG 151 (168)
Q Consensus 138 ~~Fa~amvKMg~i~ 151 (168)
+||++|+.|+.+++
T Consensus 708 ~DF~~Aw~Kvmeld 721 (726)
T PRK15061 708 RDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999876
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1e-12 Score=118.60 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCChHHHH-HHHHhCCCccchhhhc-cccccccccCccccccccccCCCCCCCCCCCHHHHHHH--HhhCCCCCC-CCc
Q 038024 4 YLIDISELS-QVSRYNITLCKIHEIS-TAHTIGTTACFFMTKRLYNFFPGGGSDPGINPSFVVEL--KATCPQNGD-VNV 78 (168)
Q Consensus 4 ~~~~~~~li-~F~~kGl~~~dlVaLs-GaHTiG~ahC~~f~~Rlynf~~~~~~dp~~~~~~~~~L--~~~Cp~~~~-~~~ 78 (168)
|.-++..++ .|++++++.+|.|||. |+||+|++|...-..-+ +++|.-.+--.+-| +..|..+.+ +..
T Consensus 238 pl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dti 310 (730)
T COG0376 238 PLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWANTYGSGKGPDTI 310 (730)
T ss_pred hhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccccccCCCcCcccc
Confidence 445678889 9999999999999997 69999999976533222 35665443333322 344544322 222
Q ss_pred cCcCC---CCCchhchHHHHHHhhcCc-----------------------------------ccccchhhhhcCcchHHH
Q 038024 79 RLPID---RGSERVFDKQILQNIKDGF-----------------------------------AVLESDSRLNDDIITNAI 120 (168)
Q Consensus 79 ~~~lD---~~Tp~~FDn~Yy~~l~~~~-----------------------------------glL~SD~~L~~d~~T~~~ 120 (168)
...++ ..||++|||.||.+|+... .+|++|.+|--||..++|
T Consensus 311 tsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kI 390 (730)
T COG0376 311 TSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKI 390 (730)
T ss_pred cccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHH
Confidence 33343 3479999999999998642 378999999999999999
Q ss_pred HHHHhcccCCCCCc-chHHHHHHHHHHhcC
Q 038024 121 IDSYLGILSPIFGP-SFEADFVESIVKMGH 149 (168)
Q Consensus 121 V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~ 149 (168)
.+.|.. || .|.+.||+|+-||..
T Consensus 391 s~rf~e------~pd~F~~~FArAWfKLtH 414 (730)
T COG0376 391 SRRFLE------DPDEFADAFARAWFKLTH 414 (730)
T ss_pred HHHHHh------CHHHHHHHHHHHHHHHhh
Confidence 999999 99 999999999999965
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=83.44 E-value=3 Score=39.07 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.4
Q ss_pred cCcchHHHHHHHhcccCCCCCc-chHHHHHHHHHHhcCCC
Q 038024 113 DDIITNAIIDSYLGILSPIFGP-SFEADFVESIVKMGHIG 151 (168)
Q Consensus 113 ~d~~T~~~V~~~a~~~~~~~~~-~F~~~Fa~amvKMg~i~ 151 (168)
+++.-|.+.+.||.- -++ .|.+||+.++.|.=++.
T Consensus 690 sns~LRA~aEVYa~d----da~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 690 SNSELRALAEVYASD----DAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred CcHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccc
Confidence 445557888999861 144 99999999999986654
No 19
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=64.51 E-value=2.9 Score=32.21 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=26.1
Q ss_pred CChHHHH-HHHHhCCCccchhh-hcccccccccc
Q 038024 6 IDISELS-QVSRYNITLCKIHE-ISTAHTIGTTA 37 (168)
Q Consensus 6 ~~~~~li-~F~~kGl~~~dlVa-LsGaHTiG~ah 37 (168)
+++.+.| +|++|||++.++-+ |=-+|-||++.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 4567788 99999999999754 55999888875
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=62.54 E-value=6.8 Score=27.55 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhcCCCC
Q 038024 136 FEADFVESIVKMGHIGV 152 (168)
Q Consensus 136 F~~~Fa~amvKMg~i~v 152 (168)
...+|..+|.||+.||-
T Consensus 3 m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHCTTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45789999999998863
No 21
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=31.00 E-value=21 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHH-HHHHhCCCccchhhhccccccc
Q 038024 9 SELS-QVSRYNITLCKIHEISTAHTIG 34 (168)
Q Consensus 9 ~~li-~F~~kGl~~~dlVaLsGaHTiG 34 (168)
+.|- .|.+.||+..||-.|+.+.--+
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~~~~ 37 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEADGEA 37 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHGGGT
T ss_pred CcHHHHHHHcCCCHHHHHHHHhccCcc
Confidence 4677 9999999999999999776333
No 22
>COG4950 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=38 Score=27.55 Aligned_cols=28 Identities=14% Similarity=-0.079 Sum_probs=23.1
Q ss_pred CCCCCChHHHH-HHHHhCCCccchhhhcc
Q 038024 2 CHYLIDISELS-QVSRYNITLCKIHEIST 29 (168)
Q Consensus 2 ~~~~~~~~~li-~F~~kGl~~~dlVaLsG 29 (168)
.||...=.+-+ .-..-||+..|+|+|++
T Consensus 130 ~~P~~~~r~~l~~L~~vGLta~DiVtLsq 158 (193)
T COG4950 130 SSPSDIDREALERLYDVGLTARDIVTLSQ 158 (193)
T ss_pred cCcccCCHHHHHHHhhcCCCccchhhHHH
Confidence 36666666777 88899999999999986
No 23
>PHA03420 E4 protein; Provisional
Probab=25.23 E-value=34 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.3
Q ss_pred chhchHHHHHHhhcCcc
Q 038024 87 ERVFDKQILQNIKDGFA 103 (168)
Q Consensus 87 p~~FDn~Yy~~l~~~~g 103 (168)
-.-||..||+.++.|+.
T Consensus 12 ~hPWdTPYYrrlldg~~ 28 (137)
T PHA03420 12 HHPWDTPYYRRLLDGRA 28 (137)
T ss_pred CCCcccHHHHHHHhhhh
Confidence 34699999999999874
No 24
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=24.74 E-value=56 Score=21.57 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcC
Q 038024 137 EADFVESIVKMGH 149 (168)
Q Consensus 137 ~~~Fa~amvKMg~ 149 (168)
++||.+||+-|-.
T Consensus 5 ~~DFr~SM~EMI~ 17 (59)
T PF04844_consen 5 YEDFRESMVEMIE 17 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999953
No 25
>PLN02705 beta-amylase
Probab=22.92 E-value=69 Score=30.71 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHh------cCCCCCCCCCCcccc
Q 038024 136 FEADFVESIVKM------GHIGVKTGQQGHVRR 162 (168)
Q Consensus 136 F~~~Fa~amvKM------g~i~vltG~~GeIR~ 162 (168)
|...|...|.-+ ..|.|=-|..||.|-
T Consensus 392 FM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRY 424 (681)
T PLN02705 392 FMRSFRSEFDDLFVEGLITAVEIGLGASGELKY 424 (681)
T ss_pred HHHHHHHHHHHhccCCceeEEEeccCCCccccC
Confidence 666666666653 457777899999995
No 26
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=22.62 E-value=28 Score=30.51 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=28.6
Q ss_pred hcCc-chHHHHHHHhcccCCCCCc--chHHHHHHHHHHhcCCCCCCC
Q 038024 112 NDDI-ITNAIIDSYLGILSPIFGP--SFEADFVESIVKMGHIGVKTG 155 (168)
Q Consensus 112 ~~d~-~T~~~V~~~a~~~~~~~~~--~F~~~Fa~amvKMg~i~vltG 155 (168)
+-|| +-..+.+.|+... ++.++ .=--.|+.+|++-|-+||||=
T Consensus 150 WyDpVEN~di~~vy~kLG-~iv~~a~L~~v~f~d~mv~~G~VGVlTl 195 (355)
T PF06478_consen 150 WYDPVENPDIHRVYAKLG-PIVNRAMLKAVKFCDAMVEKGLVGVLTL 195 (355)
T ss_pred CcCCccChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCeeEEEcc
Confidence 3345 4456788888621 11222 233489999999999999995
No 27
>PHA02591 hypothetical protein; Provisional
Probab=22.56 E-value=68 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCCChHHHH-HHHHhCCCccchhhhcc
Q 038024 3 HYLIDISELS-QVSRYNITLCKIHEIST 29 (168)
Q Consensus 3 ~~~~~~~~li-~F~~kGl~~~dlVaLsG 29 (168)
|+.+++-.+. .-.++|+|.+++..++|
T Consensus 43 ~~~dd~~~vA~eL~eqGlSqeqIA~~LG 70 (83)
T PHA02591 43 ESEDDLISVTHELARKGFTVEKIASLLG 70 (83)
T ss_pred eccchHHHHHHHHHHcCCCHHHHHHHhC
Confidence 6777888888 89999999999988876
No 28
>PF13024 DUF3884: Protein of unknown function (DUF3884)
Probab=21.53 E-value=62 Score=22.54 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCCCCChHHHH-HHHH-hCCCccchhhhcc
Q 038024 1 MCHYLIDISELS-QVSR-YNITLCKIHEIST 29 (168)
Q Consensus 1 ~~~~~~~~~~li-~F~~-kGl~~~dlVaLsG 29 (168)
.||+..++++.. .|-. .+|+.+|....++
T Consensus 39 iChS~~~~eeFq~~Fl~~t~L~~~~~~~~~f 69 (77)
T PF13024_consen 39 ICHSDLSLEEFQKKFLNITKLKEEEVDIISF 69 (77)
T ss_pred EEeccccHHHHHHHHHHhcCCCHHHheeeee
Confidence 399999999999 7765 5788888766554
No 29
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=21.24 E-value=71 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHhcC
Q 038024 135 SFEADFVESIVKMGH 149 (168)
Q Consensus 135 ~F~~~Fa~amvKMg~ 149 (168)
.-+.||.+||+-|-.
T Consensus 9 DPy~DFr~SM~EMI~ 23 (66)
T TIGR01568 9 DPYEDFRRSMEEMIE 23 (66)
T ss_pred ChHHHHHHHHHHHHH
Confidence 458899999999954
No 30
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=21.12 E-value=24 Score=26.49 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=9.1
Q ss_pred hhhcccccccccc
Q 038024 25 HEISTAHTIGTTA 37 (168)
Q Consensus 25 VaLsGaHTiG~ah 37 (168)
|+|+|+|..|++-
T Consensus 2 I~i~G~~stGKTT 14 (163)
T PF13521_consen 2 IVITGGPSTGKTT 14 (163)
T ss_dssp EEEE--TTSHHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999875
No 31
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=21.09 E-value=32 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.5
Q ss_pred CChHHHH-HHHHhCCCccchh
Q 038024 6 IDISELS-QVSRYNITLCKIH 25 (168)
Q Consensus 6 ~~~~~li-~F~~kGl~~~dlV 25 (168)
..++++| .++++|++..++=
T Consensus 31 ~eVe~~I~klakkG~tpSqIG 51 (60)
T PF08069_consen 31 EEVEELIVKLAKKGLTPSQIG 51 (60)
T ss_dssp HHHHHHHHHHCCTTHCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHhh
Confidence 3577899 9999999988764
No 32
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=21.03 E-value=43 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCC--ccchhhhccccccccccC
Q 038024 9 SELSQVSRYNIT--LCKIHEISTAHTIGTTAC 38 (168)
Q Consensus 9 ~~li~F~~kGl~--~~dlVaLsGaHTiG~ahC 38 (168)
.+-+.+-+++++ -.|+++|||.| |..+-
T Consensus 15 ~~pl~~Iar~~s~~~~~I~IlSGtH--G~~~G 44 (119)
T PF15656_consen 15 NAPLETIARRPSGDNGDIHILSGTH--GYCSG 44 (119)
T ss_pred HHHHHHHHhCcCCCCCCEEEEeCCC--CCccc
Confidence 334456678887 99999999999 66544
Done!