BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038026
MLLLSRFEFDRPFVLDTQTVLATISVFVAIALSLFLGFKGDPVPCDRCAGNGGTKCVFCN
DGKMKIESGLVDCRVCKGAGFISETTKLERFHMNVVDM

High Scoring Gene Products

Symbol, full name Information P value
AT3G44020 protein from Arabidopsis thaliana 1.0e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038026
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2097164 - symbol:AT3G44020 "AT3G44020" species...   310  1.0e-27   1


>TAIR|locus:2097164 [details] [associations]
            symbol:AT3G44020 "AT3G44020" species:3702 "Arabidopsis
            thaliana" [GO:0009543 "chloroplast thylakoid lumen" evidence=ISS]
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL163975 EMBL:AK118643
            IPI:IPI00532713 PIR:T48956 RefSeq:NP_189988.1 UniGene:At.36205
            ProteinModelPortal:Q9LXV9 SMR:Q9LXV9 EnsemblPlants:AT3G44020.1
            GeneID:823519 KEGG:ath:AT3G44020 TAIR:At3g44020 eggNOG:NOG276110
            HOGENOM:HOG000238632 InParanoid:Q9LXV9 OMA:MKVESGM PhylomeDB:Q9LXV9
            ProtClustDB:CLSN2914780 Genevestigator:Q9LXV9 Uniprot:Q9LXV9
        Length = 159

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query:     1 MLLLSRFEFDRPFVLDTQTVLATISVFVAIALSLFLGFKGDPVPCDRCAGNGGTKCVFCN 60
             + L S F+    F+ DTQT + TIS+ VAIALSLFLGFKGDPVPC+RC GNGGTKCVFC 
Sbjct:    65 LFLSSAFDGGGGFI-DTQTFIVTISLVVAIALSLFLGFKGDPVPCERCGGNGGTKCVFCL 123

Query:    61 DGKMKIESGLVDCRVCKGAGFI 82
             +GKMK+ESG+VDC+VCKG+G I
Sbjct:   124 EGKMKVESGMVDCKVCKGSGLI 145


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 22  0.44    29
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.59u 0.13s 10.72t   Elapsed:  00:00:00
  Total cpu time:  10.59u 0.13s 10.72t   Elapsed:  00:00:00
  Start:  Fri May 10 11:12:27 2013   End:  Fri May 10 11:12:27 2013

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