BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038026
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIEESTVFE 217
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIKESTVFE 217
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIGESTVFE 217
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|B Chain B, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 344
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 217
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 333
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121
Replaced By Glu (R121e)
Length = 330
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin
Length = 334
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LKDGAGDVAFIRESTVFE 216
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LKDGAGDVAFIRESTVFE 216
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LKDGAGDVAFIRESTVFE 216
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 217
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 217
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 167 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 216
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 166 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 215
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 168 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFILESTVFE 217
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKL 88
G +C C DG +KIE V C VC+GA + ET ++
Sbjct: 771 GGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEV 812
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L+ C C+ A + S
Sbjct: 30 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LMRCSQCRVAKYCS 73
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L+ C C+ A + S
Sbjct: 29 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LMRCSQCRVAKYCS 72
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L+ C C+ A + S
Sbjct: 31 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LMRCSQCRVAKYCS 74
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L+ C C+ A + S
Sbjct: 65 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LMRCSQCRVAKYCS 108
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L+ C C+ A + S
Sbjct: 29 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LMRCSQCRVAKYCS 72
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 36 LGFKGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83
L F+ DP+ C G+ G C C GK K L C C+ A + S
Sbjct: 30 LLFRSDPLAYTVCKGSRGVVCDRCLLGKEK----LXRCSQCRVAKYCS 73
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of
Human Lactotransferrin Or With The Isolated Biantennary
Glycopeptide: Role Of The Fucose Moiety
Length = 159
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 77 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LKDGAGDVAFIRESTVFE 126
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C +CAG G KC N +G +C + + AG F+ +T LE
Sbjct: 167 PKLCQQCAGKGAEKCACSNHEPYFGYAGAFNC-LKEDAGDVAFVKHSTVLE 216
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIE-----SGLVDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C G +KIE V+C VCKG + ET ++ N+ D+
Sbjct: 713 GGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDI 764
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C+ DG +KIE V C VC G + ET ++ N+ ++
Sbjct: 753 GGRCEACHGDGIIKIEXHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEV 804
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,674
Number of Sequences: 62578
Number of extensions: 106108
Number of successful extensions: 223
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 39
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)