BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038026
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q46577|UVRA_DEIRA UvrABC system protein A OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=uvrA PE=3 SV=2
Length = 1016
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C DG MKIE V C VC GA + ET +++ H + D+
Sbjct: 775 GGRCEHCKGDGVMKIEMNFLPDIYVPCEVCHGARYNRETLEVKYNHKTIADV 826
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 44 PCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG 80
PC AG GGT C C DG + +G V+C VC G
Sbjct: 492 PCK--AGFGGTFCETCADGYTNVTAGCVEC-VCDATG 525
>sp|Q88YI7|UVRA_LACPL UvrABC system protein A OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=uvrA PE=3 SV=1
Length = 951
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C+ DG +KIE V C VC G + SET ++E N+ D+
Sbjct: 735 GGRCEACHGDGILKIEMNFLPDVFVPCEVCHGKQYNSETLEVEYKGKNIADV 786
>sp|Q2GLU9|DNAJ_ANAPZ Chaperone protein DnaJ OS=Anaplasma phagocytophilum (strain HZ)
GN=dnaJ PE=3 SV=1
Length = 382
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 19/70 (27%)
Query: 30 IALSLFLGFKGDPVP--------CDRCAGNGG------TKCVFCND-GKMKIESGLVD-- 72
I ++L FKG VP C C+G+GG KC CN G+++ G +
Sbjct: 129 IEVTLEDAFKGVKVPISYVTHVQCSHCSGSGGEGTAKSVKCGTCNGAGRIRTRKGFLTIE 188
Query: 73 --CRVCKGAG 80
C C G G
Sbjct: 189 ELCHTCSGEG 198
>sp|Q18192|NHR31_CAEEL Nuclear hormone receptor family member nhr-31 OS=Caenorhabditis
elegans GN=nhr-31 PE=2 SV=2
Length = 583
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 51 NGGTKCVFCNDGKMKIESGLVDCRVCKG 78
NG + C C DG K+ G++ C CKG
Sbjct: 77 NGDSVCAVCGDGIAKLHYGVLACYGCKG 104
>sp|Q8PTD1|PPNK_METMA Probable inorganic polyphosphate/ATP-NAD kinase OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 /
JCM 11833 / OCM 88) GN=ppnK PE=3 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 10 DRPFVLD-TQTVLA----TISVFVAIALSLFLGFKGDPVPCDRCAG------NGGTKCVF 58
DRP VLD + +LA + +FV+ A + LG +G PV R G GG V
Sbjct: 27 DRPEVLDMVREILARFSSQVQIFVSTATAEVLGIEGTPVERMRDEGVELVISVGGDGTVL 86
Query: 59 CNDGKMK 65
N KMK
Sbjct: 87 RNIAKMK 93
>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1
PE=1 SV=1
Length = 154
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 15 LDTQTVLA----TISVFVAIALSLFLGFKGDPV-------PCDRCAGNGGTKCVFC-NDG 62
LD TV+A SV + I + +F + D PC C G G KC C G
Sbjct: 46 LDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQKCRLCVGSG 105
Query: 63 KMKIESG-----LVDCRVCKGAGFISETT 86
+ +E G + +C C GAG ++ TT
Sbjct: 106 NVTVELGGGEKEVSNCINCDGAGSLTCTT 134
>sp|A1V9Q3|DNAJ_DESVV Chaperone protein DnaJ OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=dnaJ PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 43 VPCDRCAGNG---GTK---CVFCND-GKMKIESGL----VDCRVCKGAGFI 82
VPCD C G+G GT+ C C G+++ G + C VC+G G +
Sbjct: 148 VPCDECGGSGAAPGTRPETCRHCGGAGQIRQSQGFFQIAMPCPVCRGEGTV 198
>sp|Q725M6|DNAJ_DESVH Chaperone protein DnaJ OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=dnaJ PE=3
SV=1
Length = 376
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 43 VPCDRCAGNG---GTK---CVFCND-GKMKIESGL----VDCRVCKGAGFI 82
VPCD C G+G GT+ C C G+++ G + C VC+G G +
Sbjct: 148 VPCDECGGSGAAPGTRPETCRHCGGAGQIRQSQGFFQIAMPCPVCRGEGTV 198
>sp|P0A548|DNAJ1_MYCTU Chaperone protein DnaJ 1 OS=Mycobacterium tuberculosis GN=dnaJ1
PE=3 SV=1
Length = 395
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 15 LDTQTVLATISVFVAIALSLFLGFKGDPVPCDRCAGNG---GTK---CVFCN-DGKMKIE 67
L+T+T L + +A+ L L P PC C G+G GT C CN G +
Sbjct: 150 LETETELDFVEAAKGVAMPLRLT---SPAPCTNCHGSGARPGTSPKVCPTCNGSGVINRN 206
Query: 68 SGLVD----CRVCKGAGFISE 84
G C C+G+G I E
Sbjct: 207 QGAFGFSEPCTDCRGSGSIIE 227
>sp|P0A549|DNAJ1_MYCBO Chaperone protein DnaJ 1 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaJ1 PE=3 SV=1
Length = 395
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 15 LDTQTVLATISVFVAIALSLFLGFKGDPVPCDRCAGNG---GTK---CVFCN-DGKMKIE 67
L+T+T L + +A+ L L P PC C G+G GT C CN G +
Sbjct: 150 LETETELDFVEAAKGVAMPLRLT---SPAPCTNCHGSGARPGTSPKVCPTCNGSGVINRN 206
Query: 68 SGLVD----CRVCKGAGFISE 84
G C C+G+G I E
Sbjct: 207 QGAFGFSEPCTDCRGSGSIIE 227
>sp|Q5P3M1|DNAJ1_AROAE Chaperone protein DnaJ 1 OS=Aromatoleum aromaticum (strain EbN1)
GN=dnaJ1 PE=3 SV=1
Length = 347
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 40 GDPVPCDRCAGNG------GTKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83
D +PC C G+G C C+ G+++ L C C G G++S
Sbjct: 115 ADEIPCGACGGSGEEVLRHTRLCATCHGSGRVRDGRSLTACADCAGRGYLS 165
>sp|B0VA24|DNAJ_ACIBY Chaperone protein DnaJ OS=Acinetobacter baumannii (strain AYE)
GN=dnaJ PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|A3MA88|DNAJ_ACIBT Chaperone protein DnaJ OS=Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755) GN=dnaJ PE=3 SV=2
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|B0VQ00|DNAJ_ACIBS Chaperone protein DnaJ OS=Acinetobacter baumannii (strain SDF)
GN=dnaJ PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|B2I2G6|DNAJ_ACIBC Chaperone protein DnaJ OS=Acinetobacter baumannii (strain ACICU)
GN=dnaJ PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|B7I2B2|DNAJ_ACIB5 Chaperone protein DnaJ OS=Acinetobacter baumannii (strain AB0057)
GN=dnaJ PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|B7GV08|DNAJ_ACIB3 Chaperone protein DnaJ OS=Acinetobacter baumannii (strain
AB307-0294) GN=dnaJ PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 42 PVPCDRCAGNGGTK------CVFCN-DGKMKIESGLVD----CRVCKGAGFI 82
P PCD C G G C C+ G+++++ G C C+G G I
Sbjct: 144 PAPCDVCDGKGSKNPKDVETCKTCHGSGQVRMQQGFFSVQQTCGTCRGQGKI 195
>sp|Q8XNI5|UVRA_CLOPE UvrABC system protein A OS=Clostridium perfringens (strain 13 /
Type A) GN=uvrA PE=3 SV=1
Length = 939
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C+ DG +KIE V C VCKG + ET +++ N+ D+
Sbjct: 736 GGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNIADV 787
>sp|Q8F435|UVRA_LEPIN UvrABC system protein A OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=uvrA
PE=3 SV=1
Length = 948
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C DG +KIE V C VCKG + ET ++ N+ D+
Sbjct: 734 GGRCETCEGDGILKIEMHFLPDVYVTCEVCKGKRYNQETLEVRYKGKNIFDV 785
>sp|Q72RM8|UVRA_LEPIC UvrABC system protein A OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=uvrA PE=3 SV=1
Length = 948
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 53 GTKCVFCN-DGKMKIESGL-----VDCRVCKGAGFISETTKLERFHMNVVDM 98
G +C C DG +KIE V C VCKG + ET ++ N+ D+
Sbjct: 734 GGRCETCEGDGILKIEMHFLPDVYVTCEVCKGKRYNQETLEVRYKGKNIFDV 785
>sp|Q9W539|HR4_DROME Hormone receptor 4 OS=Drosophila melanogaster GN=Hr4 PE=1 SV=4
Length = 1518
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 56 CVFCNDGKMKIESGLVDCRVCKGAGFISETTKLERFHMNVVD 97
C+ C D + G++ C CK GF T + R + V D
Sbjct: 921 CMICEDKATGLHYGIITCEGCK--GFFKRTVQNRRVYTCVAD 960
>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1
Length = 350
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 43 VPCDRCAGNGG--TKCVFCNDGKMKIES------GLV----DCRVCKGAGFISETT 86
VPC+ C G GG T C C G+ +ES G V C CKG G++ T
Sbjct: 127 VPCEACGGEGGRRTPCPTCR-GQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAET 181
>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=dnaJ1 PE=3 SV=1
Length = 350
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 43 VPCDRCAGNGG--TKCVFCNDGKMKIES------GLV----DCRVCKGAGFISETT 86
VPC+ C G GG T C C G+ +ES G V C CKG G++ T
Sbjct: 127 VPCEACGGEGGRRTPCPTCR-GQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAET 181
>sp|P02788|TRFL_HUMAN Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6
Length = 710
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 42 PVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG---FISETTKLE 89
P C CAG G KC F + SG C + GAG FI E+T E
Sbjct: 186 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKC-LRDGAGDVAFIRESTVFE 235
>sp|P15699|AMDR_EMENI Acetamidase regulatory protein OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=amdR PE=4 SV=2
Length = 798
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 49 AGNGGTKCVFCNDGKMKIESGLVD--CRVCKGAG 80
+GNG CV C+ K++ ++ LV C C+ AG
Sbjct: 13 SGNGSAACVHCHRRKVRCDARLVGLPCSNCRSAG 46
>sp|B1ZUS0|DNAJ_OPITP Chaperone protein DnaJ OS=Opitutus terrae (strain DSM 11246 /
PB90-1) GN=dnaJ PE=3 SV=1
Length = 382
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 25/71 (35%)
Query: 43 VPCDRCAGNG---GTKCVFC----NDGKMKIESGLVD------------------CRVCK 77
V C+RC G+G G+K V C G+++ G++ C VC
Sbjct: 157 VACERCDGSGAEPGSKRVTCPTCRGAGQVRRSGGIITFTQTCPTCGGMGTKIEKPCTVCH 216
Query: 78 GAGFISETTKL 88
G G + TTKL
Sbjct: 217 GEGRVRRTTKL 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,516,721
Number of Sequences: 539616
Number of extensions: 1344090
Number of successful extensions: 4028
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4014
Number of HSP's gapped (non-prelim): 42
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)