Query 038026
Match_columns 98
No_of_seqs 63 out of 65
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.7 1.9E-17 4.1E-22 117.2 2.4 78 13-90 1-95 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.3 1.1E-06 2.5E-11 55.7 3.8 46 45-90 1-65 (66)
3 KOG2813 Predicted molecular ch 97.7 1.9E-05 4E-10 66.2 2.4 48 43-90 188-265 (406)
4 cd03031 GRX_GRX_like Glutaredo 97.6 8.2E-05 1.8E-09 54.3 4.0 46 39-84 96-147 (147)
5 PRK14296 chaperone protein Dna 97.3 0.00021 4.6E-09 58.1 3.6 50 41-90 148-215 (372)
6 KOG2824 Glutaredoxin-related p 97.3 0.00029 6.3E-09 57.2 4.2 50 39-88 226-280 (281)
7 TIGR02349 DnaJ_bact chaperone 97.3 0.00029 6.3E-09 56.3 3.7 50 41-90 142-209 (354)
8 PRK14301 chaperone protein Dna 97.2 0.00039 8.5E-09 56.5 3.6 50 41-90 143-206 (373)
9 PRK10767 chaperone protein Dna 97.2 0.00044 9.5E-09 55.8 3.8 50 41-90 141-204 (371)
10 PRK14282 chaperone protein Dna 97.1 0.00046 9.9E-09 55.8 3.8 50 41-90 151-218 (369)
11 PTZ00037 DnaJ_C chaperone prot 97.1 0.00047 1E-08 57.4 3.9 50 41-90 149-217 (421)
12 PRK14285 chaperone protein Dna 97.1 0.00049 1.1E-08 55.8 3.4 50 41-90 145-208 (365)
13 PRK14298 chaperone protein Dna 97.1 0.00042 9.2E-09 56.4 3.1 49 42-90 141-207 (377)
14 PRK14295 chaperone protein Dna 97.1 0.00059 1.3E-08 55.8 3.8 50 41-90 165-228 (389)
15 COG0484 DnaJ DnaJ-class molecu 97.1 0.00055 1.2E-08 57.1 3.7 51 42-92 142-208 (371)
16 PRK14293 chaperone protein Dna 97.0 0.00069 1.5E-08 54.9 4.0 50 41-90 142-209 (374)
17 PRK14278 chaperone protein Dna 97.0 0.00083 1.8E-08 54.7 4.1 50 41-90 138-205 (378)
18 PRK14280 chaperone protein Dna 97.0 0.00061 1.3E-08 55.3 3.2 50 41-90 142-209 (376)
19 PRK14279 chaperone protein Dna 97.0 0.00087 1.9E-08 54.9 3.9 51 40-90 171-235 (392)
20 PRK14290 chaperone protein Dna 97.0 0.00091 2E-08 54.0 3.9 49 42-90 149-214 (365)
21 PRK14300 chaperone protein Dna 97.0 0.00076 1.7E-08 54.7 3.5 49 42-90 145-207 (372)
22 PRK14284 chaperone protein Dna 96.9 0.00076 1.6E-08 55.0 3.3 50 41-90 157-220 (391)
23 PRK14286 chaperone protein Dna 96.9 0.00088 1.9E-08 54.4 3.7 51 40-90 148-212 (372)
24 PRK14276 chaperone protein Dna 96.9 0.00067 1.5E-08 55.2 3.0 51 40-90 144-212 (380)
25 PRK14294 chaperone protein Dna 96.9 0.00087 1.9E-08 54.2 3.5 50 41-90 143-206 (366)
26 PRK14283 chaperone protein Dna 96.9 0.00093 2E-08 54.2 3.5 49 42-90 146-212 (378)
27 PRK14297 chaperone protein Dna 96.9 0.00082 1.8E-08 54.6 3.1 50 41-90 147-214 (380)
28 PRK14277 chaperone protein Dna 96.9 0.00094 2E-08 54.4 3.3 50 41-90 154-221 (386)
29 PRK14291 chaperone protein Dna 96.8 0.0013 2.7E-08 53.6 3.7 49 42-90 156-217 (382)
30 PRK14281 chaperone protein Dna 96.8 0.0016 3.4E-08 53.4 4.0 49 42-90 163-228 (397)
31 PRK14289 chaperone protein Dna 96.8 0.001 2.2E-08 54.0 2.9 49 42-90 154-220 (386)
32 PRK14287 chaperone protein Dna 96.8 0.00097 2.1E-08 54.2 2.5 49 42-90 138-204 (371)
33 PRK14288 chaperone protein Dna 96.7 0.0019 4.2E-08 52.4 4.1 49 42-90 140-201 (369)
34 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.7 0.0014 3.1E-08 41.5 2.6 39 39-80 12-66 (66)
35 PRK14292 chaperone protein Dna 96.4 0.0029 6.2E-08 51.1 3.2 49 42-90 139-206 (371)
36 PRK14298 chaperone protein Dna 95.9 0.0075 1.6E-07 49.2 3.1 39 41-83 157-211 (377)
37 PRK14300 chaperone protein Dna 95.8 0.0078 1.7E-07 48.9 3.1 39 41-83 161-211 (372)
38 PRK14284 chaperone protein Dna 95.8 0.0068 1.5E-07 49.5 2.5 39 40-82 173-223 (391)
39 COG0484 DnaJ DnaJ-class molecu 95.7 0.0084 1.8E-07 50.2 2.8 39 41-83 158-210 (371)
40 KOG0712 Molecular chaperone (D 95.6 0.011 2.4E-07 48.9 3.3 60 28-90 116-195 (337)
41 PRK14296 chaperone protein Dna 95.6 0.013 2.8E-07 47.8 3.5 39 41-83 165-219 (372)
42 PRK14285 chaperone protein Dna 95.5 0.01 2.3E-07 48.1 2.8 39 41-83 162-212 (365)
43 PRK14278 chaperone protein Dna 95.5 0.012 2.5E-07 48.1 3.0 39 41-83 155-209 (378)
44 PRK10767 chaperone protein Dna 95.5 0.014 2.9E-07 47.2 3.2 39 41-83 158-208 (371)
45 PRK14301 chaperone protein Dna 95.4 0.011 2.3E-07 48.2 2.4 39 41-83 160-210 (373)
46 PRK14290 chaperone protein Dna 95.4 0.015 3.3E-07 47.0 3.3 39 41-83 164-218 (365)
47 PRK14279 chaperone protein Dna 95.3 0.013 2.7E-07 48.2 2.6 39 41-83 189-239 (392)
48 PRK14286 chaperone protein Dna 95.3 0.014 3E-07 47.6 2.8 40 41-84 166-217 (372)
49 PRK14282 chaperone protein Dna 95.3 0.019 4.1E-07 46.5 3.5 40 40-83 167-222 (369)
50 PRK14288 chaperone protein Dna 95.3 0.018 4E-07 46.8 3.4 39 41-83 155-205 (369)
51 PRK14280 chaperone protein Dna 95.3 0.018 3.9E-07 46.8 3.3 39 41-83 159-213 (376)
52 COG1107 Archaea-specific RecJ- 95.1 0.018 3.8E-07 51.7 3.0 48 43-90 3-77 (715)
53 PRK14276 chaperone protein Dna 95.0 0.02 4.4E-07 46.6 2.9 39 41-83 162-216 (380)
54 PRK14277 chaperone protein Dna 95.0 0.018 3.9E-07 47.0 2.6 39 41-83 171-225 (386)
55 PTZ00037 DnaJ_C chaperone prot 94.9 0.027 5.8E-07 47.1 3.4 42 40-83 164-221 (421)
56 PRK14295 chaperone protein Dna 94.9 0.02 4.3E-07 47.0 2.6 39 41-83 182-232 (389)
57 PRK14291 chaperone protein Dna 94.9 0.026 5.7E-07 46.0 3.3 39 41-83 172-221 (382)
58 PRK14289 chaperone protein Dna 94.9 0.024 5.3E-07 46.1 3.0 40 40-83 169-224 (386)
59 KOG2813 Predicted molecular ch 94.8 0.014 3E-07 49.4 1.5 34 43-83 235-269 (406)
60 TIGR02349 DnaJ_bact chaperone 94.8 0.025 5.5E-07 45.2 2.9 39 41-83 159-213 (354)
61 PRK14294 chaperone protein Dna 94.8 0.03 6.5E-07 45.3 3.3 39 41-83 160-210 (366)
62 PRK14297 chaperone protein Dna 94.6 0.033 7.1E-07 45.4 3.0 40 41-83 164-218 (380)
63 PRK14281 chaperone protein Dna 94.4 0.04 8.8E-07 45.2 3.2 39 41-83 178-232 (397)
64 PRK14292 chaperone protein Dna 93.9 0.056 1.2E-06 43.7 3.1 39 42-83 157-210 (371)
65 COG1107 Archaea-specific RecJ- 93.8 0.064 1.4E-06 48.3 3.4 35 55-92 55-91 (715)
66 PRK14293 chaperone protein Dna 93.4 0.058 1.3E-06 43.8 2.4 38 53-90 143-195 (374)
67 PRK14287 chaperone protein Dna 93.1 0.065 1.4E-06 43.6 2.3 38 54-91 139-191 (371)
68 PRK14283 chaperone protein Dna 92.6 0.078 1.7E-06 43.1 2.1 38 53-90 146-198 (378)
69 TIGR02642 phage_xxxx uncharact 92.0 0.28 6E-06 37.6 4.3 38 25-66 86-129 (186)
70 PF05129 Elf1: Transcription e 91.2 0.097 2.1E-06 35.1 0.9 36 55-95 24-60 (81)
71 KOG2824 Glutaredoxin-related p 91.2 0.15 3.2E-06 41.8 2.1 29 43-77 241-280 (281)
72 PLN03165 chaperone protein dna 90.9 0.16 3.4E-06 36.2 1.8 34 43-83 53-99 (111)
73 TIGR02642 phage_xxxx uncharact 89.0 0.25 5.4E-06 37.9 1.7 21 69-89 98-123 (186)
74 TIGR02098 MJ0042_CXXC MJ0042 f 82.8 1.3 2.8E-05 24.8 2.2 9 54-62 3-11 (38)
75 KOG0712 Molecular chaperone (D 76.1 2.2 4.8E-05 35.6 2.4 41 40-82 141-198 (337)
76 TIGR00630 uvra excinuclease AB 76.0 1.6 3.6E-05 40.2 1.8 13 10-22 682-694 (924)
77 PF03811 Zn_Tnp_IS1: InsA N-te 74.6 3 6.5E-05 24.3 2.1 25 53-77 5-36 (36)
78 PF08271 TF_Zn_Ribbon: TFIIB z 74.0 1.9 4E-05 25.1 1.1 19 79-97 17-35 (43)
79 PRK00349 uvrA excinuclease ABC 72.7 2 4.4E-05 39.6 1.6 6 84-89 764-769 (943)
80 PF07092 DUF1356: Protein of u 72.5 1.4 3E-05 35.3 0.4 11 72-82 40-50 (238)
81 PRK14892 putative transcriptio 71.4 4 8.7E-05 28.5 2.5 27 69-95 20-56 (99)
82 PF13901 DUF4206: Domain of un 71.0 1.9 4.1E-05 32.6 0.8 35 43-78 143-180 (202)
83 PF13719 zinc_ribbon_5: zinc-r 70.6 3.1 6.7E-05 23.8 1.5 24 54-77 3-32 (37)
84 TIGR03655 anti_R_Lar restricti 60.0 8.7 0.00019 23.2 2.1 28 55-82 3-38 (53)
85 cd03031 GRX_GRX_like Glutaredo 59.4 6.3 0.00014 28.8 1.7 21 71-91 100-120 (147)
86 COG5082 AIR1 Arginine methyltr 58.9 7.3 0.00016 30.3 2.0 42 39-80 57-107 (190)
87 PF14205 Cys_rich_KTR: Cystein 58.4 8.2 0.00018 24.9 1.8 30 51-80 2-38 (55)
88 PRK00635 excinuclease ABC subu 57.8 5.4 0.00012 39.6 1.4 10 72-81 1609-1618(1809)
89 smart00647 IBR In Between Ring 57.3 16 0.00035 21.4 2.9 25 68-95 38-62 (64)
90 PRK05978 hypothetical protein; 56.2 5.6 0.00012 29.6 1.0 10 83-92 54-63 (148)
91 PF08792 A2L_zn_ribbon: A2L zi 56.0 12 0.00027 21.3 2.1 10 67-76 18-27 (33)
92 PF01485 IBR: IBR domain; Int 55.3 7.7 0.00017 22.7 1.3 22 71-95 41-62 (64)
93 COG1327 Predicted transcriptio 53.8 7.7 0.00017 29.6 1.3 25 54-78 1-36 (156)
94 PF04438 zf-HIT: HIT zinc fing 51.7 9 0.00019 21.3 1.1 21 71-91 3-23 (30)
95 PF12760 Zn_Tnp_IS1595: Transp 46.7 21 0.00046 20.9 2.2 24 54-77 19-44 (46)
96 COG0178 UvrA Excinuclease ATPa 44.5 16 0.00035 34.4 2.2 19 61-79 739-762 (935)
97 PRK00423 tfb transcription ini 44.0 15 0.00033 29.2 1.7 19 79-97 28-46 (310)
98 TIGR00595 priA primosomal prot 43.2 19 0.00041 30.7 2.2 54 35-90 204-262 (505)
99 PF13453 zf-TFIIB: Transcripti 43.1 17 0.00036 20.8 1.4 24 55-79 1-28 (41)
100 PF14353 CpXC: CpXC protein 42.7 22 0.00047 24.4 2.1 14 69-82 37-50 (128)
101 PF12669 P12: Virus attachment 41.8 40 0.00087 21.2 3.1 10 43-52 28-37 (58)
102 PRK01103 formamidopyrimidine/5 40.9 23 0.00051 27.6 2.3 15 48-62 240-254 (274)
103 PRK09710 lar restriction allev 40.7 25 0.00054 23.2 2.0 27 54-80 7-37 (64)
104 smart00261 FU Furin-like repea 39.9 16 0.00035 20.6 1.0 18 73-90 11-28 (46)
105 PF07295 DUF1451: Protein of u 39.4 17 0.00038 26.7 1.3 33 50-82 109-142 (146)
106 cd00064 FU Furin-like repeats. 39.3 18 0.00038 20.9 1.1 20 72-91 5-24 (49)
107 cd02338 ZZ_PCMF_like Zinc fing 38.6 18 0.00038 21.8 1.0 32 55-90 2-33 (49)
108 TIGR00244 transcriptional regu 37.9 21 0.00045 26.8 1.5 25 54-78 1-36 (147)
109 PF14354 Lar_restr_allev: Rest 37.8 32 0.00069 20.6 2.1 7 54-60 4-10 (61)
110 PRK11032 hypothetical protein; 36.5 18 0.00039 27.2 1.0 33 49-81 120-153 (160)
111 PRK05580 primosome assembly pr 35.1 28 0.0006 30.7 2.1 46 43-90 382-430 (679)
112 PRK00398 rpoP DNA-directed RNA 34.5 38 0.00083 19.6 2.0 10 81-90 21-30 (46)
113 TIGR00577 fpg formamidopyrimid 34.4 32 0.00069 27.0 2.1 16 47-62 239-254 (272)
114 PRK14811 formamidopyrimidine-D 34.2 33 0.00072 26.9 2.2 36 48-91 230-265 (269)
115 TIGR03153 cytochr_NrfH cytochr 33.8 22 0.00048 25.2 1.1 23 39-61 25-60 (135)
116 TIGR00630 uvra excinuclease AB 33.7 27 0.00058 32.5 1.8 9 45-53 739-747 (924)
117 COG0178 UvrA Excinuclease ATPa 33.1 24 0.00053 33.3 1.5 25 42-66 730-766 (935)
118 PRK12380 hydrogenase nickel in 32.7 43 0.00094 23.2 2.4 22 69-90 69-95 (113)
119 PRK03824 hypA hydrogenase nick 32.1 34 0.00073 24.5 1.8 9 52-60 69-77 (135)
120 smart00659 RPOLCX RNA polymera 32.0 32 0.00069 20.6 1.4 23 55-77 4-26 (44)
121 PRK14810 formamidopyrimidine-D 31.8 38 0.00082 26.6 2.2 13 49-61 240-252 (272)
122 PRK10445 endonuclease VIII; Pr 31.3 37 0.0008 26.5 2.0 13 50-62 232-244 (263)
123 TIGR00757 RNaseEG ribonuclease 31.1 24 0.00051 29.8 1.0 13 43-55 391-403 (414)
124 PF04236 Transp_Tc5_C: Tc5 tra 31.1 40 0.00086 21.8 1.8 23 39-61 24-48 (63)
125 PF05605 zf-Di19: Drought indu 31.0 21 0.00046 21.3 0.5 8 54-61 3-10 (54)
126 PF13717 zinc_ribbon_4: zinc-r 30.3 32 0.00068 19.6 1.1 10 82-91 3-12 (36)
127 PRK14873 primosome assembly pr 30.1 37 0.00079 30.4 2.0 57 32-90 371-431 (665)
128 PF07092 DUF1356: Protein of u 29.9 26 0.00056 28.1 1.0 25 43-67 28-53 (238)
129 COG4969 PilA Tfp pilus assembl 29.9 18 0.0004 25.7 0.1 16 23-38 18-33 (125)
130 KOG1025 Epidermal growth facto 29.6 34 0.00073 33.0 1.8 42 47-88 497-559 (1177)
131 COG1645 Uncharacterized Zn-fin 28.3 37 0.00079 25.1 1.4 18 72-89 30-52 (131)
132 TIGR00100 hypA hydrogenase nic 27.8 57 0.0012 22.6 2.3 7 84-90 89-95 (115)
133 PRK00349 uvrA excinuclease ABC 27.3 38 0.00083 31.6 1.7 33 43-81 739-772 (943)
134 PF02600 DsbB: Disulfide bond 27.3 21 0.00046 25.1 0.1 27 23-49 12-38 (156)
135 PF06827 zf-FPG_IleRS: Zinc fi 27.2 63 0.0014 17.1 2.0 8 54-61 2-9 (30)
136 KOG0978 E3 ubiquitin ligase in 27.2 20 0.00044 32.7 -0.1 10 51-60 641-650 (698)
137 PRK09917 hypothetical protein; 26.1 28 0.00061 25.6 0.5 26 15-40 128-153 (157)
138 PF03604 DNA_RNApol_7kD: DNA d 25.2 29 0.00064 19.7 0.4 23 56-78 3-25 (32)
139 COG0777 AccD Acetyl-CoA carbox 25.1 24 0.00052 29.3 0.0 30 50-79 25-56 (294)
140 PRK03681 hypA hydrogenase nick 25.0 44 0.00096 23.2 1.3 7 72-78 89-95 (114)
141 PTZ00382 Variant-specific surf 25.0 88 0.0019 21.3 2.8 17 73-91 30-46 (96)
142 KOG0715 Molecular chaperone (D 24.7 46 0.001 26.6 1.6 52 43-94 165-227 (288)
143 PRK11712 ribonuclease G; Provi 22.5 43 0.00094 29.0 1.1 13 43-55 403-415 (489)
144 PF13408 Zn_ribbon_recom: Reco 22.2 44 0.00096 19.2 0.8 14 79-92 3-16 (58)
145 PF07754 DUF1610: Domain of un 21.8 69 0.0015 17.3 1.4 9 68-76 14-22 (24)
146 PRK11827 hypothetical protein; 21.7 73 0.0016 20.5 1.8 20 72-91 10-36 (60)
147 cd02345 ZZ_dah Zinc finger, ZZ 21.7 54 0.0012 19.7 1.1 31 55-89 2-32 (49)
148 PRK03976 rpl37ae 50S ribosomal 21.5 77 0.0017 22.0 2.0 12 55-66 38-49 (90)
149 PF06677 Auto_anti-p27: Sjogre 21.4 86 0.0019 18.6 1.9 9 68-76 32-40 (41)
150 cd02334 ZZ_dystrophin Zinc fin 21.2 55 0.0012 19.9 1.1 32 55-90 2-33 (49)
151 PRK00420 hypothetical protein; 21.1 74 0.0016 22.7 1.9 18 43-60 24-47 (112)
152 PF14446 Prok-RING_1: Prokaryo 21.1 57 0.0012 20.7 1.2 13 81-93 21-33 (54)
153 PF11196 DUF2834: Protein of u 21.0 33 0.00071 23.5 0.0 21 21-41 76-96 (97)
154 PF03302 VSP: Giardia variant- 21.0 78 0.0017 26.3 2.2 61 32-92 61-133 (397)
155 PF09538 FYDLN_acid: Protein o 20.5 58 0.0013 22.9 1.2 16 35-50 19-34 (108)
156 PRK03564 formate dehydrogenase 20.5 1.7E+02 0.0037 24.1 4.1 29 23-51 155-196 (309)
157 PF02038 ATP1G1_PLM_MAT8: ATP1 20.4 43 0.00092 21.2 0.5 28 10-37 4-35 (50)
158 PF08274 PhnA_Zn_Ribbon: PhnA 20.2 69 0.0015 18.0 1.3 23 55-77 4-26 (30)
159 PF06676 DUF1178: Protein of u 20.0 40 0.00086 25.1 0.3 13 78-90 29-41 (148)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.67 E-value=1.9e-17 Score=117.21 Aligned_cols=78 Identities=32% Similarity=0.670 Sum_probs=67.2
Q ss_pred cccccceEee----ehHHHHHHHHHHHhcc-------cCCCcCCCCCCCCcceeccccC-CCceEee-----CceeeCCC
Q 038026 13 FVLDTQTVLA----TISVFVAIALSLFLGF-------KGDPVPCDRCAGNGGTKCVFCN-DGKMKIE-----SGLVDCRV 75 (98)
Q Consensus 13 ~~~d~qt~~~----~~sv~~~i~~~lf~~~-------r~d~~pC~~C~GtG~~~C~fC~-~G~vk~e-----~~~~rC~~ 75 (98)
++||++||++ .+|+|+||+||+||++ +++++.|..|+|+|+.+|..|+ .|.+... ..+.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~ 80 (111)
T PLN03165 1 VDLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCIN 80 (111)
T ss_pred CccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCC
Confidence 4789999876 4799999999999997 5788999999999999999999 5655442 23779999
Q ss_pred CccceeEeCcccccc
Q 038026 76 CKGAGFISETTKLER 90 (98)
Q Consensus 76 C~GaG~I~C~tC~g~ 90 (98)
|+|.|++.|++|.++
T Consensus 81 C~G~Gk~~C~~C~G~ 95 (111)
T PLN03165 81 CDGAGSLTCTTCQGS 95 (111)
T ss_pred CCCcceeeCCCCCCC
Confidence 999999999999986
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.27 E-value=1.1e-06 Score=55.73 Aligned_cols=46 Identities=30% Similarity=0.646 Sum_probs=33.1
Q ss_pred CCCCCCCcc------eeccccC-CCceEee--------CceeeCCCCccceeEe----Ccccccc
Q 038026 45 CDRCAGNGG------TKCVFCN-DGKMKIE--------SGLVDCRVCKGAGFIS----ETTKLER 90 (98)
Q Consensus 45 C~~C~GtG~------~~C~fC~-~G~vk~e--------~~~~rC~~C~GaG~I~----C~tC~g~ 90 (98)
|+.|+|+|+ ..|..|+ .|.+... .....|+.|+|.|.+. |++|.|+
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCc
Confidence 789999999 5699999 5655543 2578999999999998 9999874
No 3
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.9e-05 Score=66.24 Aligned_cols=48 Identities=33% Similarity=0.683 Sum_probs=35.4
Q ss_pred cCCCCCCCCcceeccccC-CCc--------eEe-------------e--------CceeeCCCCccceeEeCcccccc
Q 038026 43 VPCDRCAGNGGTKCVFCN-DGK--------MKI-------------E--------SGLVDCRVCKGAGFISETTKLER 90 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~-~G~--------vk~-------------e--------~~~~rC~~C~GaG~I~C~tC~g~ 90 (98)
..|-.|+|+|..+|.-|+ +|. |+- . .+..+|++|+|.|++.|+||.++
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gt 265 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGT 265 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCc
Confidence 458888888888888888 551 111 0 36778888888888888888876
No 4
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.59 E-value=8.2e-05 Score=54.33 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=37.7
Q ss_pred cCCCcCCCCCCCCcceeccccCCC-ceEee-----CceeeCCCCccceeEeC
Q 038026 39 KGDPVPCDRCAGNGGTKCVFCNDG-KMKIE-----SGLVDCRVCKGAGFISE 84 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~C~fC~~G-~vk~e-----~~~~rC~~C~GaG~I~C 84 (98)
.....+|+.|.|.++++|..|+++ |+-.+ ...+||+.|.--|+|.|
T Consensus 96 ~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 96 RAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred ccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 345577999999999999999954 55443 34899999999999987
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.33 E-value=0.00021 Score=58.10 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=38.7
Q ss_pred CCcCCCCCCCCcce------eccccC-CCceEee--------CceeeCCCCccceeEe---Ccccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCN-DGKMKIE--------SGLVDCRVCKGAGFIS---ETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~-~G~vk~e--------~~~~rC~~C~GaG~I~---C~tC~g~ 90 (98)
..+.|..|+|+|.. .|..|+ .|.+... .....|+.|.|.|++. |++|.|+
T Consensus 148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~ 215 (372)
T PRK14296 148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGK 215 (372)
T ss_pred eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCc
Confidence 34789999999974 599999 4544332 1356899999999986 9999885
No 6
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00029 Score=57.20 Aligned_cols=50 Identities=20% Similarity=0.485 Sum_probs=42.7
Q ss_pred cCCCcCCCCCCCCcceeccccCCC-ceEe----eCceeeCCCCccceeEeCcccc
Q 038026 39 KGDPVPCDRCAGNGGTKCVFCNDG-KMKI----ESGLVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~C~fC~~G-~vk~----e~~~~rC~~C~GaG~I~C~tC~ 88 (98)
++++-.|+.|.|.++++|..|++. ++-. +....||+.|.=-|+|.|+.|-
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 566688999999999999999954 5544 2478999999999999999995
No 7
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.26 E-value=0.00029 Score=56.26 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=38.3
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeEe---Ccccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFIS---ETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I~---C~tC~g~ 90 (98)
..+.|..|+|+|+ ..|..|++ |.+... .....|+.|.|.|++. |++|.+.
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (354)
T TIGR02349 142 RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGK 209 (354)
T ss_pred cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCC
Confidence 3578999999995 46999995 433321 1357999999999974 9999975
No 8
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.17 E-value=0.00039 Score=56.47 Aligned_cols=50 Identities=30% Similarity=0.719 Sum_probs=38.8
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|++ |.+.... ....|+.|.|.|++ .|++|.|+
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 206 (373)
T PRK14301 143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGS 206 (373)
T ss_pred ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCC
Confidence 3578999999997 56999994 5443322 36799999999987 69999874
No 9
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.16 E-value=0.00044 Score=55.76 Aligned_cols=50 Identities=28% Similarity=0.687 Sum_probs=38.4
Q ss_pred CCcCCCCCCCCcce------eccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|.. .|..|++ |.+.... ....|+.|.|.|++ .|++|.|+
T Consensus 141 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 204 (371)
T PRK10767 141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQ 204 (371)
T ss_pred ecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCC
Confidence 35789999999964 7999994 5433321 35689999999988 69999874
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.15 E-value=0.00046 Score=55.83 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=38.4
Q ss_pred CCcCCCCCCCCcce------eccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|+. +|..|++ |.+... .....|+.|.|.|++ .|++|.|.
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 218 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGS 218 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCc
Confidence 34789999999974 6999994 544332 136799999999987 59999875
No 11
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.14 E-value=0.00047 Score=57.42 Aligned_cols=50 Identities=28% Similarity=0.709 Sum_probs=38.5
Q ss_pred CCcCCCCCCCCcce-----eccccCCCceEee---------CceeeCCCCccceeEe-----Ccccccc
Q 038026 41 DPVPCDRCAGNGGT-----KCVFCNDGKMKIE---------SGLVDCRVCKGAGFIS-----ETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----~C~fC~~G~vk~e---------~~~~rC~~C~GaG~I~-----C~tC~g~ 90 (98)
..+.|..|+|+|+. .|..|++..+... .....|+.|+|.|++. |++|.|+
T Consensus 149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~ 217 (421)
T PTZ00037 149 KDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGK 217 (421)
T ss_pred ccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCc
Confidence 35789999999973 6999995443321 1356999999999984 9999985
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.09 E-value=0.00049 Score=55.78 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=38.3
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|++ |.+.... ....|+.|.|.|.+ .|++|.|+
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 208 (365)
T PRK14285 145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGK 208 (365)
T ss_pred ecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCC
Confidence 3578999999996 46999994 4433322 36799999999987 49999885
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.08 E-value=0.00042 Score=56.44 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=38.0
Q ss_pred CcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|. .+|..|++ |.+... .....|+.|.|.|.+ .|++|.|.
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGT 207 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence 578999999997 67999994 543332 136789999999976 59999874
No 14
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.08 E-value=0.00059 Score=55.84 Aligned_cols=50 Identities=30% Similarity=0.643 Sum_probs=38.3
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEeeC----ceeeCCCCccceeEe---Ccccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIES----GLVDCRVCKGAGFIS---ETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I~---C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|++ |.+.... ....|+.|.|.|++. |++|.|+
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGS 228 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCC
Confidence 4578999999996 56999994 4433321 367999999999985 9999874
No 15
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00055 Score=57.10 Aligned_cols=51 Identities=29% Similarity=0.601 Sum_probs=39.8
Q ss_pred CcCCCCCCCCcce------eccccCC-CceEee------CceeeCCCCccceeEe---Ccccccccc
Q 038026 42 PVPCDRCAGNGGT------KCVFCND-GKMKIE------SGLVDCRVCKGAGFIS---ETTKLERFH 92 (98)
Q Consensus 42 ~~pC~~C~GtG~~------~C~fC~~-G~vk~e------~~~~rC~~C~GaG~I~---C~tC~g~~~ 92 (98)
.+.|..|+|+|+- .|..|++ |-+... ...+.|+.|.|.|.+. |++|.|.-.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 3679999999654 6999994 533322 3588999999999997 999998754
No 16
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.05 E-value=0.00069 Score=54.87 Aligned_cols=50 Identities=22% Similarity=0.660 Sum_probs=38.4
Q ss_pred CCcCCCCCCCCcce------eccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..++|..|+|+|.. +|..|++ |.+... ....+|..|.|.|++ .|++|.|+
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (374)
T PRK14293 142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQ 209 (374)
T ss_pred ccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCC
Confidence 35789999999974 5999994 433321 135799999999998 79999874
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.00 E-value=0.00083 Score=54.68 Aligned_cols=50 Identities=28% Similarity=0.632 Sum_probs=37.9
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|++ |.+... .....|+.|.|.|.+ .|++|.|+
T Consensus 138 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 205 (378)
T PRK14278 138 TAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGD 205 (378)
T ss_pred eeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCc
Confidence 3578999999996 46999994 433221 135689999999987 49999885
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.99 E-value=0.00061 Score=55.31 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=38.0
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|++ |.+... .....|+.|+|.|.+ .|++|.|+
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (376)
T PRK14280 142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGK 209 (376)
T ss_pred eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCc
Confidence 3578999999995 46999994 544332 136689999999987 49999874
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.96 E-value=0.00087 Score=54.89 Aligned_cols=51 Identities=29% Similarity=0.627 Sum_probs=38.6
Q ss_pred CCCcCCCCCCCCcc------eeccccCC-CceEee----CceeeCCCCccceeEe---Ccccccc
Q 038026 40 GDPVPCDRCAGNGG------TKCVFCND-GKMKIE----SGLVDCRVCKGAGFIS---ETTKLER 90 (98)
Q Consensus 40 ~d~~pC~~C~GtG~------~~C~fC~~-G~vk~e----~~~~rC~~C~GaG~I~---C~tC~g~ 90 (98)
...+.|..|+|+|+ ..|..|++ |.+... .....|+.|.|.|++. |++|.|.
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 235 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGT 235 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCC
Confidence 34578999999997 45999995 443332 2467999999999874 8888874
No 20
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.96 E-value=0.00091 Score=54.04 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=37.2
Q ss_pred CcCCCCCCCCcc-----eeccccCC-CceEeeC--------ceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG-----TKCVFCND-GKMKIES--------GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~-----~~C~fC~~-G~vk~e~--------~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|+ ..|..|++ |.+.... ....|+.|.|.|.+ .|++|.++
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 214 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGT 214 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCc
Confidence 467999999997 46999995 4333221 24799999999977 59999875
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.96 E-value=0.00076 Score=54.69 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=37.6
Q ss_pred CcCCCCCCCCcc------eeccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|. .+|..|++ |.+.... ....|+.|.|.|.+ .|++|.|+
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGM 207 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCc
Confidence 467999999995 57999994 4433322 36689999999988 59999874
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.94 E-value=0.00076 Score=55.04 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=37.8
Q ss_pred CCcCCCCCCCCcce------eccccCC-CceEee----CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCND-GKMKIE----SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~~-G~vk~e----~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|.. .|..|++ |.+... .....|+.|.|.|.+ .|++|.|.
T Consensus 157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (391)
T PRK14284 157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQ 220 (391)
T ss_pred eeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCc
Confidence 35779999999974 5999994 443332 235799999999987 59999874
No 23
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.94 E-value=0.00088 Score=54.45 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=38.6
Q ss_pred CCCcCCCCCCCCcc------eeccccCC-CceEee----CceeeCCCCccceeE---eCcccccc
Q 038026 40 GDPVPCDRCAGNGG------TKCVFCND-GKMKIE----SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 40 ~d~~pC~~C~GtG~------~~C~fC~~-G~vk~e----~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
...+.|..|+|+|+ ..|..|++ |.+... .....|+.|.|.|++ .|++|.|+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (372)
T PRK14286 148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQ 212 (372)
T ss_pred eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCC
Confidence 34578999999997 57999995 433322 146699999999987 59999885
No 24
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.94 E-value=0.00067 Score=55.17 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=38.3
Q ss_pred CCCcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 40 GDPVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 40 ~d~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
...+.|..|+|+|. ..|..|++ |.+... .....|+.|.|.|.+ .|++|.|.
T Consensus 144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (380)
T PRK14276 144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGT 212 (380)
T ss_pred eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCc
Confidence 34578999999997 46999994 443332 136799999999987 59999874
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.92 E-value=0.00087 Score=54.17 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=38.5
Q ss_pred CCcCCCCCCCCcce------eccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGGT------KCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~~------~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|.. .|..|++ |.+.... ....|+.|.|.|.+ .|++|.|.
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 206 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQ 206 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCc
Confidence 35789999999974 6999994 4433322 36799999999987 69999874
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00093 Score=54.23 Aligned_cols=49 Identities=24% Similarity=0.582 Sum_probs=38.1
Q ss_pred CcCCCCCCCCcce------eccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGGT------KCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~~------~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|+. +|..|++ |.+... .....|+.|.|.|++ .|++|.++
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGK 212 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCc
Confidence 4679999999864 5999994 444332 136799999999988 79999874
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.89 E-value=0.00082 Score=54.57 Aligned_cols=50 Identities=22% Similarity=0.655 Sum_probs=38.6
Q ss_pred CCcCCCCCCCCcc------eeccccC-CCceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCN-DGKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~-~G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
..+.|..|+|+|. ..|..|+ .|.+... .....|+.|.|.|.+ .|++|.+.
T Consensus 147 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 214 (380)
T PRK14297 147 RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGK 214 (380)
T ss_pred eeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCC
Confidence 3477999999996 5699999 4544331 147799999999987 69999884
No 28
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.87 E-value=0.00094 Score=54.41 Aligned_cols=50 Identities=26% Similarity=0.608 Sum_probs=38.0
Q ss_pred CCcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeEe---Ccccccc
Q 038026 41 DPVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFIS---ETTKLER 90 (98)
Q Consensus 41 d~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I~---C~tC~g~ 90 (98)
-.+.|..|+|+|+ .+|..|++ |.+... .....|+.|.|.|.+. |++|.|.
T Consensus 154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 221 (386)
T PRK14277 154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGT 221 (386)
T ss_pred eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCC
Confidence 3578999999996 46999994 433321 1356999999999885 9999884
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.0013 Score=53.64 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=37.3
Q ss_pred CcCCCCCCCCcc------eeccccCC-CceEee----CceeeCCCCccceeE--eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCND-GKMKIE----SGLVDCRVCKGAGFI--SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~~-G~vk~e----~~~~rC~~C~GaG~I--~C~tC~g~ 90 (98)
.+.|..|+|+|+ ..|..|++ |.+... .....|+.|.|.|.+ .|++|.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~ 217 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGR 217 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCC
Confidence 467999999995 56999994 444332 236799999999965 69999874
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.79 E-value=0.0016 Score=53.37 Aligned_cols=49 Identities=27% Similarity=0.745 Sum_probs=37.6
Q ss_pred CcCCCCCCCCcce-----eccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGGT-----KCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~~-----~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|.. .|..|++ |.+... .....|+.|.|.|.+ .|++|.|+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGE 228 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCC
Confidence 4679999999974 5999994 544332 136689999999987 59999874
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.001 Score=54.02 Aligned_cols=49 Identities=29% Similarity=0.629 Sum_probs=38.0
Q ss_pred CcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|. ..|..|++ |.+... .....|+.|.|.|.+ .|++|.|+
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGE 220 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCC
Confidence 377999999996 56999994 544332 136799999999987 69999876
No 32
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.00097 Score=54.16 Aligned_cols=49 Identities=29% Similarity=0.678 Sum_probs=37.4
Q ss_pred CcCCCCCCCCcc------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|+ ..|..|++ |.+... .....|+.|.|.|++ .|++|.+.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 204 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGK 204 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCe
Confidence 467999999995 46999994 543332 135799999999987 59999874
No 33
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.73 E-value=0.0019 Score=52.43 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=36.9
Q ss_pred CcCCCCCCCCcce-----eccccCC-CceEeeC----ceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGGT-----KCVFCND-GKMKIES----GLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~~-----~C~fC~~-G~vk~e~----~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|..|+|+|+. .|..|++ |.+.... ....|+.|.|.|++ .|++|.|.
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 201 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGK 201 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCc
Confidence 4689999999964 5999994 5443322 35689999999976 49999874
No 34
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.72 E-value=0.0014 Score=41.46 Aligned_cols=39 Identities=36% Similarity=0.908 Sum_probs=27.0
Q ss_pred cCCCcCCCCCCCCcce---------------eccccCC-CceEeeCceeeCCCCccce
Q 038026 39 KGDPVPCDRCAGNGGT---------------KCVFCND-GKMKIESGLVDCRVCKGAG 80 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~---------------~C~fC~~-G~vk~e~~~~rC~~C~GaG 80 (98)
..+++.|+.|+|+|.+ .|+.|++ |++. ...+|+.|+|.|
T Consensus 12 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i---~~~~C~~C~G~g 66 (66)
T PF00684_consen 12 GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII---EKDPCKTCKGSG 66 (66)
T ss_dssp TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE----TSSB-SSSTTSS
T ss_pred CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE---CCCCCCCCCCcC
Confidence 3456789999999987 3999994 5543 577899999986
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.43 E-value=0.0029 Score=51.08 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=37.2
Q ss_pred CcCCCCCCCCcc-------eeccccCC-CceEee--------CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG-------TKCVFCND-GKMKIE--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~-------~~C~fC~~-G~vk~e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
...|..|+|+|. ..|..|++ |.+... .....|+.|.|.|.+ .|++|.|+
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 206 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGR 206 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCc
Confidence 467999999995 46999994 543322 125689999999988 69999874
No 36
>PRK14298 chaperone protein DnaJ; Provisional
Probab=95.87 E-value=0.0075 Score=49.24 Aligned_cols=39 Identities=33% Similarity=0.886 Sum_probs=31.1
Q ss_pred CCcCCCCCCCCcce---------------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ .|..|+ .|++. ..+|+.|+|.|.+.
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 211 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI----ESPCPVCSGTGKVR 211 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc----CCCCCCCCCccEEE
Confidence 45789999999953 699999 45543 34699999999875
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.83 E-value=0.0078 Score=48.88 Aligned_cols=39 Identities=33% Similarity=0.813 Sum_probs=31.0
Q ss_pred CCcCCCCCCCCcce-----------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+.+|..|+|+|.+ +|..|++ |++. ..+|+.|+|.|.+.
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 211 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----KNPCKKCHGMGRYH 211 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----CCCCCCCCCceEEE
Confidence 46789999999975 5999994 5443 46699999999874
No 38
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.77 E-value=0.0068 Score=49.52 Aligned_cols=39 Identities=38% Similarity=0.911 Sum_probs=31.3
Q ss_pred CCCcCCCCCCCCcc-----------eeccccC-CCceEeeCceeeCCCCccceeE
Q 038026 40 GDPVPCDRCAGNGG-----------TKCVFCN-DGKMKIESGLVDCRVCKGAGFI 82 (98)
Q Consensus 40 ~d~~pC~~C~GtG~-----------~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I 82 (98)
.++..|..|+|+|. .+|+.|+ .|++. ...|+.|+|.|.+
T Consensus 173 ~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v 223 (391)
T PRK14284 173 QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI----TDPCSVCRGQGRI 223 (391)
T ss_pred CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc----CCcCCCCCCccee
Confidence 35678999999998 5799999 45543 3459999999987
No 39
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0084 Score=50.16 Aligned_cols=39 Identities=41% Similarity=0.934 Sum_probs=32.0
Q ss_pred CCcCCCCCCCCcc-------------eeccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG-------------TKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~-------------~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.++.|..|+|+|. +.|+-|+ .|++. ...|++|+|.|.+.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i----~~pC~~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII----KDPCGKCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC----CCCCCCCCCCCeEe
Confidence 6889999999994 4699999 45554 56799999999974
No 40
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.011 Score=48.93 Aligned_cols=60 Identities=27% Similarity=0.572 Sum_probs=45.9
Q ss_pred HHHHHHHHhcccCCCcCCCCCCCCccee-----ccccCCCceEee----------CceeeCCCCccceeE-----eCccc
Q 038026 28 VAIALSLFLGFKGDPVPCDRCAGNGGTK-----CVFCNDGKMKIE----------SGLVDCRVCKGAGFI-----SETTK 87 (98)
Q Consensus 28 ~~i~~~lf~~~r~d~~pC~~C~GtG~~~-----C~fC~~G~vk~e----------~~~~rC~~C~GaG~I-----~C~tC 87 (98)
.|-..+++|-. +..|+.|+|+|+.+ |..|.+.++++. +-..+|..|.|+|.. .|++|
T Consensus 116 ~G~s~kl~l~~---~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C 192 (337)
T KOG0712|consen 116 MGKSKKLFLSR---NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTC 192 (337)
T ss_pred cCCccceeccc---CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCccc
Confidence 33444554432 36799999999865 999997766652 457899999999999 99999
Q ss_pred ccc
Q 038026 88 LER 90 (98)
Q Consensus 88 ~g~ 90 (98)
.++
T Consensus 193 ~G~ 195 (337)
T KOG0712|consen 193 SGA 195 (337)
T ss_pred ccc
Confidence 986
No 41
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.61 E-value=0.013 Score=47.80 Aligned_cols=39 Identities=41% Similarity=0.876 Sum_probs=31.0
Q ss_pred CCcCCCCCCCCcce---------------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ .|..|+ .|++. ...|+.|+|.|.+.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 219 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII----KNKCKNCKGKGKYL 219 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee----cccccCCCCceEEE
Confidence 46789999999964 799999 45543 35599999999763
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.54 E-value=0.01 Score=48.12 Aligned_cols=39 Identities=36% Similarity=0.902 Sum_probs=31.0
Q ss_pred CCcCCCCCCCCcce-----------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|. .|++. ...|+.|+|.|.+.
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 212 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----SNPCKSCKGKGSLK 212 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCccccc----CCCCCCCCCCCEEe
Confidence 46789999999954 799999 45553 34699999999874
No 43
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.53 E-value=0.012 Score=48.06 Aligned_cols=39 Identities=36% Similarity=0.882 Sum_probs=30.6
Q ss_pred CCcCCCCCCCCcc---------------eeccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG---------------TKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~---------------~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. ++|..|+ .|++. ...|+.|+|.|.+.
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 209 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----PDPCHECAGDGRVR 209 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----CCCCCCCCCceeEe
Confidence 4678999999995 4699999 45543 34599999999874
No 44
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.50 E-value=0.014 Score=47.23 Aligned_cols=39 Identities=36% Similarity=0.926 Sum_probs=30.6
Q ss_pred CCcCCCCCCCCcce-----------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|++ |+. . ..+|+.|+|.|.+.
T Consensus 158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-~---~~~C~~C~G~g~v~ 208 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKI-I---KDPCKKCHGQGRVE 208 (371)
T ss_pred CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeE-C---CCCCCCCCCCceEe
Confidence 45789999999976 4999994 443 2 35699999999873
No 45
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.43 E-value=0.011 Score=48.24 Aligned_cols=39 Identities=33% Similarity=0.973 Sum_probs=30.9
Q ss_pred CCcCCCCCCCCcc-----------eeccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG-----------TKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~-----------~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. .+|..|+ .|++. ...|+.|+|.|.+.
T Consensus 160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 210 (373)
T PRK14301 160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI----THPCPKCKGSGIVQ 210 (373)
T ss_pred CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----CCCCCCCCCCceec
Confidence 4678999999996 4799999 45543 34699999999874
No 46
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.40 E-value=0.015 Score=46.99 Aligned_cols=39 Identities=31% Similarity=0.836 Sum_probs=31.2
Q ss_pred CCcCCCCCCCCcc---------------eeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG---------------TKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~---------------~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. ..|..|++ |.+ ....|+.|+|.|.+.
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~ 218 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI----PEEKCPRCNGTGTVV 218 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE----ccCCCCCCCCceeEE
Confidence 4678999999995 57999994 554 245799999999874
No 47
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.33 E-value=0.013 Score=48.17 Aligned_cols=39 Identities=33% Similarity=0.813 Sum_probs=31.0
Q ss_pred CCcCCCCCCCCcce-----------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|++ |++. ..+|+.|+|.|.+.
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----~~~C~~C~G~g~v~ 239 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----CCcCCCCCCCeEEE
Confidence 56889999999975 6999994 5542 35699999999874
No 48
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.32 E-value=0.014 Score=47.57 Aligned_cols=40 Identities=30% Similarity=0.858 Sum_probs=31.2
Q ss_pred CCcCCCCCCCCcce-----------eccccCC-CceEeeCceeeCCCCccceeEeC
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCND-GKMKIESGLVDCRVCKGAGFISE 84 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~C 84 (98)
.+..|..|+|+|.+ +|..|++ |++. ..+|+.|+|.|.+.=
T Consensus 166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~~~~ 217 (372)
T PRK14286 166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI----SNPCKTCGGQGLQEK 217 (372)
T ss_pred CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----cccCCCCCCCcEEec
Confidence 45789999999964 6999994 5443 346999999998753
No 49
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.32 E-value=0.019 Score=46.55 Aligned_cols=40 Identities=35% Similarity=0.782 Sum_probs=31.1
Q ss_pred CCCcCCCCCCCCcce---------------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 40 GDPVPCDRCAGNGGT---------------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 40 ~d~~pC~~C~GtG~~---------------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
..++.|..|+|+|.+ .|..|++ |+.. ...|+.|+|.|.+.
T Consensus 167 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 222 (369)
T PRK14282 167 SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----GEYCHECGGSGRIR 222 (369)
T ss_pred CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----CCCCCCCCCceeEE
Confidence 346789999999964 5999994 5442 35699999999875
No 50
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.30 E-value=0.018 Score=46.77 Aligned_cols=39 Identities=33% Similarity=0.844 Sum_probs=30.3
Q ss_pred CCcCCCCCCCCcce-----------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ .|..|.+ |++. ...|+.|+|.|.+.
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 205 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----KTPCQACKGKTYIL 205 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----cccCccCCCcceEE
Confidence 45779999999964 5999994 5442 34599999999874
No 51
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.27 E-value=0.018 Score=46.84 Aligned_cols=39 Identities=31% Similarity=0.824 Sum_probs=30.5
Q ss_pred CCcCCCCCCCCcce---------------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|++ |++. ...|+.|+|.|.+.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 213 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI----KEKCPTCHGKGKVR 213 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee----cCCCCCCCCceEEE
Confidence 46789999999953 6999994 5442 35599999999874
No 52
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.018 Score=51.71 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=31.5
Q ss_pred cCCCCCCCCccee-----ccccC-CCceEee-----------------CceeeCCCCccceeE----eCcccccc
Q 038026 43 VPCDRCAGNGGTK-----CVFCN-DGKMKIE-----------------SGLVDCRVCKGAGFI----SETTKLER 90 (98)
Q Consensus 43 ~pC~~C~GtG~~~-----C~fC~-~G~vk~e-----------------~~~~rC~~C~GaG~I----~C~tC~g~ 90 (98)
+.|..|+|+|+.. |+.|+ .|..+.. ++-.-|+.|+|.|.| .|++|-|+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~ 77 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGT 77 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCc
Confidence 4699999999875 99999 5655431 123357777776655 36666654
No 53
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.02 Score=46.64 Aligned_cols=39 Identities=36% Similarity=0.901 Sum_probs=30.6
Q ss_pred CCcCCCCCCCCcce---------------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|+ .|++. ...|+.|+|.|.+.
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~~~ 216 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI----KEPCQTCHGTGHEK 216 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc----cCCCCCCCCceEEE
Confidence 46789999999964 699999 45543 35699999999864
No 54
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.99 E-value=0.018 Score=46.99 Aligned_cols=39 Identities=38% Similarity=0.874 Sum_probs=30.8
Q ss_pred CCcCCCCCCCCcce---------------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|++ |++. ..+|+.|+|.|.+.
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 225 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII----TDPCNKCGGTGRIR 225 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec----cCCCCCCCCCcEEe
Confidence 46789999999964 6999994 5442 34699999999874
No 55
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.93 E-value=0.027 Score=47.10 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=31.7
Q ss_pred CCCcCCCCCCCCcc---------------eeccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 40 GDPVPCDRCAGNGG---------------TKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 40 ~d~~pC~~C~GtG~---------------~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
..+..|..|+|+|. .+|..|+ .|++.. ....|+.|+|.|.+.
T Consensus 164 ~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 164 DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP--ESKKCKNCSGKGVKK 221 (421)
T ss_pred CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc--ccccCCcCCCcceee
Confidence 34678999999995 3799999 454432 234699999999875
No 56
>PRK14295 chaperone protein DnaJ; Provisional
Probab=94.90 E-value=0.02 Score=46.96 Aligned_cols=39 Identities=36% Similarity=0.798 Sum_probs=30.9
Q ss_pred CCcCCCCCCCCcc-----------eeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG-----------TKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~-----------~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. .+|..|++ |++. ..+|+.|+|.|.+.
T Consensus 182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~~~ 232 (389)
T PRK14295 182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA----DDPCLVCKGSGRAK 232 (389)
T ss_pred CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe----ccCCCCCCCCceEe
Confidence 4678999999997 47999994 5443 35699999999874
No 57
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.89 E-value=0.026 Score=45.98 Aligned_cols=39 Identities=26% Similarity=0.698 Sum_probs=30.8
Q ss_pred CCcCCCCCCCCcce-----------eccccCCCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCNDGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.++.|..|+|+|.+ .|..|++.... ...|+.|+|.|.+.
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~C~~C~G~g~v~ 221 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL----REPCSKCNGRGLVI 221 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE----ccCCCCCCCCceEE
Confidence 46789999999964 79999954432 35699999999874
No 58
>PRK14289 chaperone protein DnaJ; Provisional
Probab=94.88 E-value=0.024 Score=46.07 Aligned_cols=40 Identities=33% Similarity=0.862 Sum_probs=31.4
Q ss_pred CCCcCCCCCCCCcce---------------eccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 40 GDPVPCDRCAGNGGT---------------KCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 40 ~d~~pC~~C~GtG~~---------------~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
..+..|..|+|+|.+ +|..|++ |.+. ..+|+.|+|+|.+.
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 224 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII----KKKCKKCGGEGIVY 224 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc----CcCCCCCCCCcEEe
Confidence 346789999999886 6999994 5443 35799999999874
No 59
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.014 Score=49.37 Aligned_cols=34 Identities=35% Similarity=0.831 Sum_probs=28.1
Q ss_pred cCCCCCCCCcceeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 43 VPCDRCAGNGGTKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
-.|..|||+|..+|..|++ |+. .|.+|+|.|+++
T Consensus 235 ~~C~~C~G~G~~~C~tC~grG~k-------~C~TC~gtgsll 269 (406)
T KOG2813|consen 235 DLCYMCHGRGIKECHTCKGRGKK-------PCTTCSGTGSLL 269 (406)
T ss_pred chhhhccCCCcccCCcccCCCCc-------ccccccCcccee
Confidence 5699999999999999994 444 499999999875
No 60
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.82 E-value=0.025 Score=45.22 Aligned_cols=39 Identities=38% Similarity=0.939 Sum_probs=30.4
Q ss_pred CCcCCCCCCCCcc---------------eeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG---------------TKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~---------------~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. .+|..|.+ |+.. ...|+.|+|.|.+.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII----KEPCSTCKGKGRVK 213 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec----CCCCCCCCCCcEec
Confidence 3678999999995 46999995 4432 23699999999874
No 61
>PRK14294 chaperone protein DnaJ; Provisional
Probab=94.79 E-value=0.03 Score=45.35 Aligned_cols=39 Identities=36% Similarity=0.982 Sum_probs=30.7
Q ss_pred CCcCCCCCCCCcc-----------eeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG-----------TKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~-----------~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
++..|..|+|+|. +.|..|++ |+.. ...|+.|+|.|.+.
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 210 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI----VSPCKTCHGQGRVR 210 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec----CcCCCCCCCceEee
Confidence 4678999999995 47999994 5442 35699999999874
No 62
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.58 E-value=0.033 Score=45.35 Aligned_cols=40 Identities=33% Similarity=0.794 Sum_probs=30.4
Q ss_pred CCcCCCCCCCCcce---------------eccccCCCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCNDGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|.+ +|..|++..... ...|+.|+|.|.+.
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~---~~~C~~C~G~g~v~ 218 (380)
T PRK14297 164 SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI---EDPCNKCHGKGKVR 218 (380)
T ss_pred cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc---CCCCCCCCCCeEEE
Confidence 35789999999954 699999543332 35699999999763
No 63
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.36 E-value=0.04 Score=45.22 Aligned_cols=39 Identities=31% Similarity=0.773 Sum_probs=30.6
Q ss_pred CCcCCCCCCCCcc---------------eeccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGG---------------TKCVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~---------------~~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+..|..|+|+|. ++|..|++ |++. ..+|+.|+|.|.+.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~ 232 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----KDRCPACYGEGIKQ 232 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----CCCCCCCCCCccEe
Confidence 4678999999995 36999994 5442 34699999999874
No 64
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.90 E-value=0.056 Score=43.72 Aligned_cols=39 Identities=33% Similarity=0.764 Sum_probs=30.5
Q ss_pred CcCCCCCCCCcce---------------eccccCCCceEeeCceeeCCCCccceeEe
Q 038026 42 PVPCDRCAGNGGT---------------KCVFCNDGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 42 ~~pC~~C~GtG~~---------------~C~fC~~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
+..|..|+|+|.. .|..|++..... ...|+.|+|.|.+.
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~---~~~C~~C~G~g~v~ 210 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII---TDPCTVCRGRGRTL 210 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec---CCCCCCCCCceEEe
Confidence 5679999999975 599999433332 46799999999875
No 65
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.064 Score=48.26 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=16.2
Q ss_pred eccccC-CCceEeeCceeeCCCCccceeE-eCcccccccc
Q 038026 55 KCVFCN-DGKMKIESGLVDCRVCKGAGFI-SETTKLERFH 92 (98)
Q Consensus 55 ~C~fC~-~G~vk~e~~~~rC~~C~GaG~I-~C~tC~g~~~ 92 (98)
+|.+|. +|++++ +..|+.|.|.|++ .|..|.-.++
T Consensus 55 pc~~c~gkG~V~v---~~~c~~c~G~gkv~~c~~cG~~~~ 91 (715)
T COG1107 55 PCPKCRGKGTVTV---YDTCPECGGTGKVLTCDICGDIIV 91 (715)
T ss_pred CCCeeccceeEEE---EeecccCCCceeEEeeccccceec
Confidence 344454 334333 3445555555554 2444444443
No 66
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.43 E-value=0.058 Score=43.82 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=26.4
Q ss_pred ceeccccCCCceEeeCceeeCCCCccceeE---------------eCcccccc
Q 038026 53 GTKCVFCNDGKMKIESGLVDCRVCKGAGFI---------------SETTKLER 90 (98)
Q Consensus 53 ~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I---------------~C~tC~g~ 90 (98)
...|..|++...+.......|+.|.|.|.+ .|++|.|+
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 195 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGT 195 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcc
Confidence 345777775444444556789999999875 48888775
No 67
>PRK14287 chaperone protein DnaJ; Provisional
Probab=93.14 E-value=0.065 Score=43.63 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.5
Q ss_pred eeccccCCCceEeeCceeeCCCCccceeE---------------eCccccccc
Q 038026 54 TKCVFCNDGKMKIESGLVDCRVCKGAGFI---------------SETTKLERF 91 (98)
Q Consensus 54 ~~C~fC~~G~vk~e~~~~rC~~C~GaG~I---------------~C~tC~g~~ 91 (98)
..|..|++...+.......|+.|.|.|.+ .|+.|.|+-
T Consensus 139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 191 (371)
T PRK14287 139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTG 191 (371)
T ss_pred ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCC
Confidence 45778875444443445678888888864 588887764
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=92.65 E-value=0.078 Score=43.13 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=23.5
Q ss_pred ceeccccCCCceEeeCceeeCCCCccceeE---------------eCcccccc
Q 038026 53 GTKCVFCNDGKMKIESGLVDCRVCKGAGFI---------------SETTKLER 90 (98)
Q Consensus 53 ~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I---------------~C~tC~g~ 90 (98)
...|..|++...+.......|+.|.|.|.+ .|++|.|+
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 198 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGE 198 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcc
Confidence 345677774333333445677788777775 37777765
No 69
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=91.99 E-value=0.28 Score=37.63 Aligned_cols=38 Identities=26% Similarity=0.609 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcccCCCcCCCCCCCCccee-----ccccC-CCceEe
Q 038026 25 SVFVAIALSLFLGFKGDPVPCDRCAGNGGTK-----CVFCN-DGKMKI 66 (98)
Q Consensus 25 sv~~~i~~~lf~~~r~d~~pC~~C~GtG~~~-----C~fC~-~G~vk~ 66 (98)
.+++-.++.-+.. .+.|+.|+|+|... |..|+ +|+++.
T Consensus 86 ~~la~~A~~dy~~----~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 86 EAASYLAVNEVLN----SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred HHHHHHHHHHHHc----CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 3444455555543 67899999999764 88888 465544
No 70
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=91.18 E-value=0.097 Score=35.05 Aligned_cols=36 Identities=25% Similarity=0.545 Sum_probs=21.4
Q ss_pred eccccC-CCceEeeCceeeCCCCccceeEeCcccccccccce
Q 038026 55 KCVFCN-DGKMKIESGLVDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 55 ~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
.|+||+ ...+.++.... .+.|.|.|..|..+|.+++
T Consensus 24 ~CPfC~~~~sV~v~idkk-----~~~~~~~C~~Cg~~~~~~i 60 (81)
T PF05129_consen 24 DCPFCNHEKSVSVKIDKK-----EGIGILSCRVCGESFQTKI 60 (81)
T ss_dssp --TTT--SS-EEEEEETT-----TTEEEEEESSS--EEEEE-
T ss_pred cCCcCCCCCeEEEEEEcc-----CCEEEEEecCCCCeEEEcc
Confidence 477887 55555543222 7899999999999998875
No 71
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.15 Score=41.78 Aligned_cols=29 Identities=52% Similarity=1.298 Sum_probs=23.3
Q ss_pred cCCCCCCCC-----------cceeccccCCCceEeeCceeeCCCCc
Q 038026 43 VPCDRCAGN-----------GGTKCVFCNDGKMKIESGLVDCRVCK 77 (98)
Q Consensus 43 ~pC~~C~Gt-----------G~~~C~fC~~G~vk~e~~~~rC~~C~ 77 (98)
.||..|+|+ +|++|.-|+ |++..|||.|.
T Consensus 241 lpC~~C~GS~kv~~~~~~~~~~~rC~~CN------ENGLvrCp~Cs 280 (281)
T KOG2824|consen 241 LPCSNCHGSCKVHEEEEDDGGVLRCLECN------ENGLVRCPVCS 280 (281)
T ss_pred EecCCCCCceeeeeeccCCCcEEECcccC------CCCceeCCccC
Confidence 889999986 566777776 56788999996
No 72
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=90.89 E-value=0.16 Score=36.23 Aligned_cols=34 Identities=35% Similarity=1.033 Sum_probs=24.6
Q ss_pred cCCCCCCCCcce------------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 43 VPCDRCAGNGGT------------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 43 ~pC~~C~GtG~~------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
++|..|+|+|.. +|..|+ .|+ ..|+.|+|.|.+.
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk-------~~C~~C~G~G~~~ 99 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS-------LTCTTCQGSGIQP 99 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce-------eeCCCCCCCEEEe
Confidence 389999998764 466676 343 3499999999864
No 73
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=89.03 E-value=0.25 Score=37.89 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=13.1
Q ss_pred ceeeCCCCccceeEe-----Cccccc
Q 038026 69 GLVDCRVCKGAGFIS-----ETTKLE 89 (98)
Q Consensus 69 ~~~rC~~C~GaG~I~-----C~tC~g 89 (98)
....|+.|.|.|++. |++|.|
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G 123 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAG 123 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCC
Confidence 355666666666654 666665
No 74
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=82.81 E-value=1.3 Score=24.75 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=5.0
Q ss_pred eeccccCCC
Q 038026 54 TKCVFCNDG 62 (98)
Q Consensus 54 ~~C~fC~~G 62 (98)
+.|+.|.+.
T Consensus 3 ~~CP~C~~~ 11 (38)
T TIGR02098 3 IQCPNCKTS 11 (38)
T ss_pred EECCCCCCE
Confidence 356666643
No 75
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=2.2 Score=35.57 Aligned_cols=41 Identities=34% Similarity=0.758 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCccee----------------ccccCC-CceEeeCceeeCCCCccceeE
Q 038026 40 GDPVPCDRCAGNGGTK----------------CVFCND-GKMKIESGLVDCRVCKGAGFI 82 (98)
Q Consensus 40 ~d~~pC~~C~GtG~~~----------------C~fC~~-G~vk~e~~~~rC~~C~GaG~I 82 (98)
+...+|..|.|+|.+. |..|++ |.. -+..-+|+.|.|++.+
T Consensus 141 g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~--~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 141 GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET--ISLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCcccc--ccccccCcccccchhh
Confidence 3334577777777543 666662 222 2345567777777665
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.02 E-value=1.6 Score=40.16 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=7.1
Q ss_pred CCccccccceEee
Q 038026 10 DRPFVLDTQTVLA 22 (98)
Q Consensus 10 ~~~~~~d~qt~~~ 22 (98)
+..+.+||..+-.
T Consensus 682 ~~~v~vdQ~pi~~ 694 (924)
T TIGR00630 682 DKVIHIDQSPIGR 694 (924)
T ss_pred CceEEEecCCCCC
Confidence 3345666665544
No 77
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=74.59 E-value=3 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=17.0
Q ss_pred ceeccccCCCc-eEee------CceeeCCCCc
Q 038026 53 GTKCVFCNDGK-MKIE------SGLVDCRVCK 77 (98)
Q Consensus 53 ~~~C~fC~~G~-vk~e------~~~~rC~~C~ 77 (98)
.+.|++|.... ++.. ..+.||..|+
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 36799999544 5442 2477999985
No 78
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=73.99 E-value=1.9 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=9.2
Q ss_pred ceeEeCcccccccccceec
Q 038026 79 AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 79 aG~I~C~tC~g~~~~~~~~ 97 (98)
.|.+.|+.|.--..+|.+|
T Consensus 17 ~g~~vC~~CG~Vl~e~~i~ 35 (43)
T PF08271_consen 17 RGELVCPNCGLVLEENIID 35 (43)
T ss_dssp TTEEEETTT-BBEE-TTBS
T ss_pred CCeEECCCCCCEeeccccc
Confidence 4566666664444544443
No 79
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=72.72 E-value=2 Score=39.64 Aligned_cols=6 Identities=0% Similarity=-0.479 Sum_probs=3.0
Q ss_pred Cccccc
Q 038026 84 ETTKLE 89 (98)
Q Consensus 84 C~tC~g 89 (98)
|++|+|
T Consensus 764 C~~C~G 769 (943)
T PRK00349 764 CDVCKG 769 (943)
T ss_pred CccccC
Confidence 555544
No 80
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=72.48 E-value=1.4 Score=35.28 Aligned_cols=11 Identities=45% Similarity=1.156 Sum_probs=6.4
Q ss_pred eCCCCccceeE
Q 038026 72 DCRVCKGAGFI 82 (98)
Q Consensus 72 rC~~C~GaG~I 82 (98)
.||+|+|.|+|
T Consensus 40 tCPTCqGtGrI 50 (238)
T PF07092_consen 40 TCPTCQGTGRI 50 (238)
T ss_pred cCCCCcCCccC
Confidence 45666666655
No 81
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=71.42 E-value=4 Score=28.52 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=19.4
Q ss_pred ceeeCCCCc----------cceeEeCcccccccccce
Q 038026 69 GLVDCRVCK----------GAGFISETTKLERFHMNV 95 (98)
Q Consensus 69 ~~~rC~~C~----------GaG~I~C~tC~g~~~~~~ 95 (98)
....||+|. +.+.+.|+.|.-.++.+|
T Consensus 20 t~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~~V 56 (99)
T PRK14892 20 KIFECPRCGKVSISVKIKKNIAIITCGNCGLYTEFEV 56 (99)
T ss_pred cEeECCCCCCeEeeeecCCCcceEECCCCCCccCEEC
Confidence 455555555 457788999998888765
No 82
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=71.03 E-value=1.9 Score=32.61 Aligned_cols=35 Identities=29% Similarity=0.733 Sum_probs=27.3
Q ss_pred cCCCCCCCCcceeccccCCCceEe--e-CceeeCCCCcc
Q 038026 43 VPCDRCAGNGGTKCVFCNDGKMKI--E-SGLVDCRVCKG 78 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~G~vk~--e-~~~~rC~~C~G 78 (98)
.-|+-|.++|. .|-+|++..+-. + .+..+|+.|+.
T Consensus 143 ~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~~ 180 (202)
T PF13901_consen 143 YSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCKS 180 (202)
T ss_pred HHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCcc
Confidence 36999999985 899999665544 3 47888988875
No 83
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=70.61 E-value=3.1 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=11.7
Q ss_pred eeccccCCC-ceEe-----eCceeeCCCCc
Q 038026 54 TKCVFCNDG-KMKI-----ESGLVDCRVCK 77 (98)
Q Consensus 54 ~~C~fC~~G-~vk~-----e~~~~rC~~C~ 77 (98)
+.|+.|++. ++.. .....||+.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~ 32 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCG 32 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCC
Confidence 456666643 2221 23455666554
No 84
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=59.97 E-value=8.7 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.669 Sum_probs=15.5
Q ss_pred eccccCCCce-Ee-------eCceeeCCCCccceeE
Q 038026 55 KCVFCNDGKM-KI-------ESGLVDCRVCKGAGFI 82 (98)
Q Consensus 55 ~C~fC~~G~v-k~-------e~~~~rC~~C~GaG~I 82 (98)
+|+||.+.-. .. ..++..|..|.+.|-.
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEEECCCCCCCccc
Confidence 6888874322 22 1234577777776543
No 85
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=59.43 E-value=6.3 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.5
Q ss_pred eeCCCCccceeEeCccccccc
Q 038026 71 VDCRVCKGAGFISETTKLERF 91 (98)
Q Consensus 71 ~rC~~C~GaG~I~C~tC~g~~ 91 (98)
..|..|.|.++|.|..|.|-.
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~ 120 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSC 120 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcc
Confidence 458999999999999998864
No 86
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=58.94 E-value=7.3 Score=30.35 Aligned_cols=42 Identities=26% Similarity=0.602 Sum_probs=27.8
Q ss_pred cCCCcCCCCCCCCccee--cc-----ccC-CCceEee-CceeeCCCCccce
Q 038026 39 KGDPVPCDRCAGNGGTK--CV-----FCN-DGKMKIE-SGLVDCRVCKGAG 80 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~--C~-----fC~-~G~vk~e-~~~~rC~~C~GaG 80 (98)
+++.++|+.|..+|-++ |+ .|+ +++...+ .....|.+|.-.|
T Consensus 57 ~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~C~~~~~C~~Cg~~G 107 (190)
T COG5082 57 REENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNHCPKPKKCYNCGETG 107 (190)
T ss_pred cccccccchhcccCcccccCChhHhhhcCCCCcccccCCcccccccccccC
Confidence 67788999999999776 66 997 6766653 1123444444333
No 87
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=58.38 E-value=8.2 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=19.7
Q ss_pred CcceeccccCCC-ceEee------CceeeCCCCccce
Q 038026 51 NGGTKCVFCNDG-KMKIE------SGLVDCRVCKGAG 80 (98)
Q Consensus 51 tG~~~C~fC~~G-~vk~e------~~~~rC~~C~GaG 80 (98)
..|+.|+.|... ..+.. +-..-||.|+-.-
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceE
Confidence 579999999954 45542 3456677776443
No 88
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=57.77 E-value=5.4 Score=39.63 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=4.9
Q ss_pred eCCCCcccee
Q 038026 72 DCRVCKGAGF 81 (98)
Q Consensus 72 rC~~C~GaG~ 81 (98)
||++|+|.|.
T Consensus 1609 rC~~C~G~G~ 1618 (1809)
T PRK00635 1609 QCSDCWGLGY 1618 (1809)
T ss_pred CCCCCccCce
Confidence 4555555543
No 89
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=57.25 E-value=16 Score=21.37 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred CceeeCCCCccceeEeCcccccccccce
Q 038026 68 SGLVDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 68 ~~~~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
.....|+.| |..+|..|..+.|..+
T Consensus 38 ~~~v~C~~C---~~~fC~~C~~~~H~~~ 62 (64)
T smart00647 38 CNRVTCPKC---GFSFCFRCKVPWHSPV 62 (64)
T ss_pred CCeeECCCC---CCeECCCCCCcCCCCC
Confidence 457889888 5889999999999653
No 90
>PRK05978 hypothetical protein; Provisional
Probab=56.20 E-value=5.6 Score=29.59 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=5.8
Q ss_pred eCcccccccc
Q 038026 83 SETTKLERFH 92 (98)
Q Consensus 83 ~C~tC~g~~~ 92 (98)
.|+.|.-+|+
T Consensus 54 ~C~~CG~~~~ 63 (148)
T PRK05978 54 HCAACGEDFT 63 (148)
T ss_pred CccccCCccc
Confidence 4666665554
No 91
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=56.04 E-value=12 Score=21.26 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=4.4
Q ss_pred eCceeeCCCC
Q 038026 67 ESGLVDCRVC 76 (98)
Q Consensus 67 e~~~~rC~~C 76 (98)
+..+..|+.|
T Consensus 18 ~~~~~~C~~C 27 (33)
T PF08792_consen 18 EDDYEVCIFC 27 (33)
T ss_pred cCCeEEcccC
Confidence 3444444444
No 92
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=55.31 E-value=7.7 Score=22.70 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.9
Q ss_pred eeCCCCccceeEeCcccccccccce
Q 038026 71 VDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 71 ~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
.+|+.|+ ..+|..|+...|..+
T Consensus 41 ~~C~~C~---~~fC~~C~~~~H~~~ 62 (64)
T PF01485_consen 41 VTCPSCG---TEFCFKCGEPWHEGV 62 (64)
T ss_dssp CCTTSCC---SEECSSSTSESCTTS
T ss_pred eECCCCC---CcCccccCcccCCCC
Confidence 7899885 789999999999754
No 93
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=53.77 E-value=7.7 Score=29.56 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=15.9
Q ss_pred eeccccCC--CceEe----e-C----ceeeCCCCcc
Q 038026 54 TKCVFCND--GKMKI----E-S----GLVDCRVCKG 78 (98)
Q Consensus 54 ~~C~fC~~--G~vk~----e-~----~~~rC~~C~G 78 (98)
.+|+||+. .++.. | + .+++|++|.+
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~ 36 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGE 36 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhccccccc
Confidence 37999994 34433 2 1 3678888865
No 94
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=51.72 E-value=9 Score=21.33 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=14.1
Q ss_pred eeCCCCccceeEeCccccccc
Q 038026 71 VDCRVCKGAGFISETTKLERF 91 (98)
Q Consensus 71 ~rC~~C~GaG~I~C~tC~g~~ 91 (98)
..|..|...++-.||.|.-++
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~~ 23 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGARY 23 (30)
T ss_dssp EEETSSSSEESEE-TTT--EE
T ss_pred CCCccCcCCCEEECCCcCCce
Confidence 467888888888888887654
No 95
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=46.74 E-value=21 Score=20.89 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=14.2
Q ss_pred eeccccCCCceEe-e-CceeeCCCCc
Q 038026 54 TKCVFCNDGKMKI-E-SGLVDCRVCK 77 (98)
Q Consensus 54 ~~C~fC~~G~vk~-e-~~~~rC~~C~ 77 (98)
..|+.|...+... . ....+|..|+
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCC
Confidence 4467776433322 2 3678888886
No 96
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.46 E-value=16 Score=34.43 Aligned_cols=19 Identities=53% Similarity=0.955 Sum_probs=11.7
Q ss_pred CCceEeeC-----ceeeCCCCccc
Q 038026 61 DGKMKIES-----GLVDCRVCKGA 79 (98)
Q Consensus 61 ~G~vk~e~-----~~~rC~~C~Ga 79 (98)
+|.++.|+ -+..|+.|+|+
T Consensus 739 dG~ikIeM~FLpdVyv~CevC~Gk 762 (935)
T COG0178 739 DGVIKIEMHFLPDVYVPCEVCHGK 762 (935)
T ss_pred CceEEEEeccCCCceeeCCCcCCc
Confidence 34556653 46777777775
No 97
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=43.95 E-value=15 Score=29.23 Aligned_cols=19 Identities=21% Similarity=0.087 Sum_probs=15.4
Q ss_pred ceeEeCcccccccccceec
Q 038026 79 AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 79 aG~I~C~tC~g~~~~~~~~ 97 (98)
.|.+.|..|.-=..++++|
T Consensus 28 ~Ge~vC~~CG~Vl~e~~iD 46 (310)
T PRK00423 28 RGEIVCADCGLVIEENIID 46 (310)
T ss_pred CCeEeecccCCcccccccc
Confidence 6888888888878888776
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.23 E-value=19 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=28.3
Q ss_pred HhcccCCC--cCCCCCCCCcceeccccCCC-ceEeeCceeeCCCCcccee--EeCcccccc
Q 038026 35 FLGFKGDP--VPCDRCAGNGGTKCVFCNDG-KMKIESGLVDCRVCKGAGF--ISETTKLER 90 (98)
Q Consensus 35 f~~~r~d~--~pC~~C~GtG~~~C~fC~~G-~vk~e~~~~rC~~C~GaG~--I~C~tC~g~ 90 (98)
|+..|+-- ..|..|.-. .+|+.|+.. ..-...+.-+|.-|.-.-. -.||.|.++
T Consensus 204 flnrrGya~~~~C~~Cg~~--~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 204 FLNRRGYSKNLLCRSCGYI--LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred EEeCCcCCCeeEhhhCcCc--cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 44445432 347777432 468888743 2223445566666654433 246666553
No 99
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=43.08 E-value=17 Score=20.81 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=13.9
Q ss_pred eccccCCCceEe----eCceeeCCCCccc
Q 038026 55 KCVFCNDGKMKI----ESGLVDCRVCKGA 79 (98)
Q Consensus 55 ~C~fC~~G~vk~----e~~~~rC~~C~Ga 79 (98)
+|+.|+. .+.. +...-+|++|.|.
T Consensus 1 ~CP~C~~-~l~~~~~~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGT-ELEPVRLGDVEIDVCPSCGGI 28 (41)
T ss_pred CcCCCCc-ccceEEECCEEEEECCCCCeE
Confidence 4777775 2222 2345678888773
No 100
>PF14353 CpXC: CpXC protein
Probab=42.73 E-value=22 Score=24.39 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=11.5
Q ss_pred ceeeCCCCccceeE
Q 038026 69 GLVDCRVCKGAGFI 82 (98)
Q Consensus 69 ~~~rC~~C~GaG~I 82 (98)
....||+|...+.+
T Consensus 37 ~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 37 FSFTCPSCGHKFRL 50 (128)
T ss_pred CEEECCCCCCceec
Confidence 57899999888765
No 101
>PF12669 P12: Virus attachment protein p12 family
Probab=41.78 E-value=40 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=5.9
Q ss_pred cCCCCCCCCc
Q 038026 43 VPCDRCAGNG 52 (98)
Q Consensus 43 ~pC~~C~GtG 52 (98)
..|-.|.+.+
T Consensus 28 ~~c~gCs~~s 37 (58)
T PF12669_consen 28 GCCCGCSGCS 37 (58)
T ss_pred CCCCCCCCCC
Confidence 4566775544
No 102
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=40.86 E-value=23 Score=27.62 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=10.5
Q ss_pred CCCCcceeccccCCC
Q 038026 48 CAGNGGTKCVFCNDG 62 (98)
Q Consensus 48 C~GtG~~~C~fC~~G 62 (98)
=+|+.+.+|+.|.+.
T Consensus 240 Vy~R~g~pC~~Cg~~ 254 (274)
T PRK01103 240 VYGREGEPCRRCGTP 254 (274)
T ss_pred EcCCCCCCCCCCCCe
Confidence 456677788888754
No 103
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=40.69 E-value=25 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=15.5
Q ss_pred eeccccCCCceEee--Cc--eeeCCCCccce
Q 038026 54 TKCVFCNDGKMKIE--SG--LVDCRVCKGAG 80 (98)
Q Consensus 54 ~~C~fC~~G~vk~e--~~--~~rC~~C~GaG 80 (98)
.+|+||....++.+ ++ +..|..|...|
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcCc
Confidence 47899985555443 32 34555555543
No 104
>smart00261 FU Furin-like repeats.
Probab=39.91 E-value=16 Score=20.63 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=10.5
Q ss_pred CCCCccceeEeCcccccc
Q 038026 73 CRVCKGAGFISETTKLER 90 (98)
Q Consensus 73 C~~C~GaG~I~C~tC~g~ 90 (98)
|..|.|++...|.+|..-
T Consensus 11 C~~C~~~~~~~C~~C~~~ 28 (46)
T smart00261 11 CATCTGPGPDDCTSCKHG 28 (46)
T ss_pred ccccCCcCcCcCccCCcc
Confidence 555666666666666543
No 105
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=39.38 E-value=17 Score=26.72 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCcceeccccC-CCceEeeCceeeCCCCccceeE
Q 038026 50 GNGGTKCVFCN-DGKMKIESGLVDCRVCKGAGFI 82 (98)
Q Consensus 50 GtG~~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I 82 (98)
|.|-..|..|. .-..+.......||.|.+.-+.
T Consensus 109 g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTHPERLPPCPKCGHTEFT 142 (146)
T ss_pred cCceEecccCCCEEEecCCCcCCCCCCCCCCeee
Confidence 78999999998 3344444567789999886553
No 106
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=39.32 E-value=18 Score=20.87 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=11.5
Q ss_pred eCCCCccceeEeCccccccc
Q 038026 72 DCRVCKGAGFISETTKLERF 91 (98)
Q Consensus 72 rC~~C~GaG~I~C~tC~g~~ 91 (98)
.|..|.|++.-.|.+|..-+
T Consensus 5 ~C~~C~g~~~~~C~~C~~~~ 24 (49)
T cd00064 5 SCATCTGPGPDQCTSCRHGF 24 (49)
T ss_pred ccCCCcCcCcCcCccCcCcc
Confidence 45556666555566665554
No 107
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=38.56 E-value=18 Score=21.77 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=22.1
Q ss_pred eccccCCCceEeeCceeeCCCCccceeEeCcccccc
Q 038026 55 KCVFCNDGKMKIESGLVDCRVCKGAGFISETTKLER 90 (98)
Q Consensus 55 ~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~g~ 90 (98)
+|+.|....+. ..+.+|..|. .+-+|..|..+
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~--d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFT--GRRYKCLICY--DYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcE--EeeEEeCCCC--CCccchhHHhC
Confidence 56777754444 4577888886 58888888654
No 108
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=37.92 E-value=21 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=15.4
Q ss_pred eeccccCCC--ceEe----e-C----ceeeCCCCcc
Q 038026 54 TKCVFCNDG--KMKI----E-S----GLVDCRVCKG 78 (98)
Q Consensus 54 ~~C~fC~~G--~vk~----e-~----~~~rC~~C~G 78 (98)
.+|+||... ++.. + + -+++|++|.-
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~ 36 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHE 36 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCC
Confidence 379999943 3332 1 1 3678888863
No 109
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=37.77 E-value=32 Score=20.62 Aligned_cols=7 Identities=43% Similarity=1.336 Sum_probs=5.1
Q ss_pred eeccccC
Q 038026 54 TKCVFCN 60 (98)
Q Consensus 54 ~~C~fC~ 60 (98)
.+|+||.
T Consensus 4 kPCPFCG 10 (61)
T PF14354_consen 4 KPCPFCG 10 (61)
T ss_pred cCCCCCC
Confidence 3689993
No 110
>PRK11032 hypothetical protein; Provisional
Probab=36.53 E-value=18 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=25.1
Q ss_pred CCCcceeccccC-CCceEeeCceeeCCCCcccee
Q 038026 49 AGNGGTKCVFCN-DGKMKIESGLVDCRVCKGAGF 81 (98)
Q Consensus 49 ~GtG~~~C~fC~-~G~vk~e~~~~rC~~C~GaG~ 81 (98)
.|.|-+.|..|. .-.++.......||.|.+.-+
T Consensus 120 vg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F 153 (160)
T PRK11032 120 VGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQF 153 (160)
T ss_pred eecceEEecCCCCEEEecCCCcCCCCCCCCCCee
Confidence 478899999998 455555667788999987654
No 111
>PRK05580 primosome assembly protein PriA; Validated
Probab=35.08 E-value=28 Score=30.74 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=26.3
Q ss_pred cCCCCCCCCcceeccccCCCc-eEeeCceeeCCCCccceeE--eCcccccc
Q 038026 43 VPCDRCAGNGGTKCVFCNDGK-MKIESGLVDCRVCKGAGFI--SETTKLER 90 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~G~-vk~e~~~~rC~~C~GaG~I--~C~tC~g~ 90 (98)
..|..|.-. .+|+.|+..= .-...+.-+|..|.-.-.+ .||.|.++
T Consensus 382 ~~C~~Cg~~--~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 382 LLCRDCGWV--AECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred eEhhhCcCc--cCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 447777432 3688887532 2224556667777655432 57777654
No 112
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=34.48 E-value=38 Score=19.64 Aligned_cols=10 Identities=10% Similarity=-0.406 Sum_probs=5.1
Q ss_pred eEeCcccccc
Q 038026 81 FISETTKLER 90 (98)
Q Consensus 81 ~I~C~tC~g~ 90 (98)
.+.||.|..+
T Consensus 21 ~~~Cp~CG~~ 30 (46)
T PRK00398 21 GVRCPYCGYR 30 (46)
T ss_pred ceECCCCCCe
Confidence 4555555544
No 113
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.42 E-value=32 Score=26.98 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=10.6
Q ss_pred CCCCCcceeccccCCC
Q 038026 47 RCAGNGGTKCVFCNDG 62 (98)
Q Consensus 47 ~C~GtG~~~C~fC~~G 62 (98)
.=+|+.+.+|+.|.+.
T Consensus 239 ~Vy~r~g~pC~~Cg~~ 254 (272)
T TIGR00577 239 QVYGRKGEPCRRCGTP 254 (272)
T ss_pred EEeCCCCCCCCCCCCe
Confidence 3456667788888754
No 114
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=34.23 E-value=33 Score=26.93 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCCCcceeccccCCCceEeeCceeeCCCCccceeEeCccccccc
Q 038026 48 CAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFISETTKLERF 91 (98)
Q Consensus 48 C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~g~~ 91 (98)
=+|+.+.+|+.|.+.-.+...+ |.+.-.||+||-..
T Consensus 230 Vy~R~g~pC~~Cg~~I~~~~~~--------gR~ty~Cp~CQ~~~ 265 (269)
T PRK14811 230 VYGREGQPCPRCGTPIEKIVVG--------GRGTHFCPQCQPLR 265 (269)
T ss_pred ecCCCcCCCCcCCCeeEEEEEC--------CCCcEECCCCcCCC
Confidence 3566677888887542222211 35555666666543
No 115
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=33.80 E-value=22 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=16.1
Q ss_pred cCCCcCCCCCCCC-------------cceeccccCC
Q 038026 39 KGDPVPCDRCAGN-------------GGTKCVFCND 61 (98)
Q Consensus 39 r~d~~pC~~C~Gt-------------G~~~C~fC~~ 61 (98)
-.+|+-|..||-. +...|.-|+.
T Consensus 25 ~~~~~~C~~CH~m~~~~~~~~~s~H~~~~~C~dCH~ 60 (135)
T TIGR03153 25 SDDPEACVNCHVMNPQYATWQHSSHHRVATCNDCHL 60 (135)
T ss_pred cCCCcHHHHhcCCcHHHHHHccCCCCCCCcccccCC
Confidence 4667889999941 2256999983
No 116
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.66 E-value=27 Score=32.48 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=4.0
Q ss_pred CCCCCCCcc
Q 038026 45 CDRCAGNGG 53 (98)
Q Consensus 45 C~~C~GtG~ 53 (98)
|+.|.|.|.
T Consensus 739 C~~C~G~G~ 747 (924)
T TIGR00630 739 CEACQGDGV 747 (924)
T ss_pred CCCCccceE
Confidence 444444444
No 117
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=33.10 E-value=24 Score=33.33 Aligned_cols=25 Identities=24% Similarity=0.698 Sum_probs=20.1
Q ss_pred CcCCCCCCCCcce------------eccccCCCceEe
Q 038026 42 PVPCDRCAGNGGT------------KCVFCNDGKMKI 66 (98)
Q Consensus 42 ~~pC~~C~GtG~~------------~C~fC~~G~vk~ 66 (98)
.-+|+.|+|.|++ +|.-|++.+...
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCccccc
Confidence 3689999999985 599999876544
No 118
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.68 E-value=43 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=11.0
Q ss_pred ceeeCCCCccceeE-----eCcccccc
Q 038026 69 GLVDCRVCKGAGFI-----SETTKLER 90 (98)
Q Consensus 69 ~~~rC~~C~GaG~I-----~C~tC~g~ 90 (98)
...+|+.|.....+ .||+|.+.
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCC
Confidence 45566666543322 26666543
No 119
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.05 E-value=34 Score=24.46 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.7
Q ss_pred cceeccccC
Q 038026 52 GGTKCVFCN 60 (98)
Q Consensus 52 G~~~C~fC~ 60 (98)
...+|..|.
T Consensus 69 ~~~~C~~CG 77 (135)
T PRK03824 69 AVLKCRNCG 77 (135)
T ss_pred eEEECCCCC
Confidence 444555555
No 120
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.00 E-value=32 Score=20.57 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=10.9
Q ss_pred eccccCCCceEeeCceeeCCCCc
Q 038026 55 KCVFCNDGKMKIESGLVDCRVCK 77 (98)
Q Consensus 55 ~C~fC~~G~vk~e~~~~rC~~C~ 77 (98)
.|..|............|||.|.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCC
Confidence 35555532222234556666664
No 121
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.81 E-value=38 Score=26.58 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=9.4
Q ss_pred CCCcceeccccCC
Q 038026 49 AGNGGTKCVFCND 61 (98)
Q Consensus 49 ~GtG~~~C~fC~~ 61 (98)
+|+.+.+|+.|.+
T Consensus 240 y~R~g~pCprCG~ 252 (272)
T PRK14810 240 YQRTGEPCLNCKT 252 (272)
T ss_pred cCCCCCcCCCCCC
Confidence 4667778888864
No 122
>PRK10445 endonuclease VIII; Provisional
Probab=31.30 E-value=37 Score=26.52 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=8.8
Q ss_pred CCcceeccccCCC
Q 038026 50 GNGGTKCVFCNDG 62 (98)
Q Consensus 50 GtG~~~C~fC~~G 62 (98)
|+.+.+|+.|.+.
T Consensus 232 ~r~g~~Cp~Cg~~ 244 (263)
T PRK10445 232 HRDGEACERCGGI 244 (263)
T ss_pred CCCCCCCCCCCCE
Confidence 5566778888643
No 123
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=31.08 E-value=24 Score=29.81 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=10.9
Q ss_pred cCCCCCCCCccee
Q 038026 43 VPCDRCAGNGGTK 55 (98)
Q Consensus 43 ~pC~~C~GtG~~~ 55 (98)
.+|+.|+|+|+++
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 7899999999864
No 124
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.07 E-value=40 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=18.1
Q ss_pred cCCCcCCCC--CCCCcceeccccCC
Q 038026 39 KGDPVPCDR--CAGNGGTKCVFCND 61 (98)
Q Consensus 39 r~d~~pC~~--C~GtG~~~C~fC~~ 61 (98)
+.....|+. |+.++.++|..|+.
T Consensus 24 ~~~~~~C~~~gC~~~s~I~C~~Ckk 48 (63)
T PF04236_consen 24 KNVAGDCDITGCNNTSFIRCAYCKK 48 (63)
T ss_pred CCCcCcCCCCCCCCcCEEEccccCC
Confidence 455567887 99999999999874
No 125
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=30.98 E-value=21 Score=21.33 Aligned_cols=8 Identities=25% Similarity=1.045 Sum_probs=6.1
Q ss_pred eeccccCC
Q 038026 54 TKCVFCND 61 (98)
Q Consensus 54 ~~C~fC~~ 61 (98)
-+|++|..
T Consensus 3 f~CP~C~~ 10 (54)
T PF05605_consen 3 FTCPYCGK 10 (54)
T ss_pred cCCCCCCC
Confidence 46888886
No 126
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.28 E-value=32 Score=19.57 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=4.4
Q ss_pred EeCccccccc
Q 038026 82 ISETTKLERF 91 (98)
Q Consensus 82 I~C~tC~g~~ 91 (98)
|.||.|+.+|
T Consensus 3 i~Cp~C~~~y 12 (36)
T PF13717_consen 3 ITCPNCQAKY 12 (36)
T ss_pred EECCCCCCEE
Confidence 3444444443
No 127
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.11 E-value=37 Score=30.38 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=32.7
Q ss_pred HHHHhcccCCC--cCCCCCCCCcceeccccCCCc-eEeeCceeeCCCCccc-eeEeCcccccc
Q 038026 32 LSLFLGFKGDP--VPCDRCAGNGGTKCVFCNDGK-MKIESGLVDCRVCKGA-GFISETTKLER 90 (98)
Q Consensus 32 ~~lf~~~r~d~--~pC~~C~GtG~~~C~fC~~G~-vk~e~~~~rC~~C~Ga-G~I~C~tC~g~ 90 (98)
+-||+..||-- ..|..|.-. .+|..|+..= .-...+.-+|.-|.-. ---.||.|.++
T Consensus 371 vll~lnRrGyap~l~C~~Cg~~--~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 371 VLVQVPRRGYVPSLACARCRTP--ARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred EEEEecCCCCCCeeEhhhCcCe--eECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 33455555542 357777542 4688887542 2224567778888542 23468888765
No 128
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=29.95 E-value=26 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=19.0
Q ss_pred cCCCCCCCCcceeccccC-CCceEee
Q 038026 43 VPCDRCAGNGGTKCVFCN-DGKMKIE 67 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~-~G~vk~e 67 (98)
.|+.+-.|.+...|+.|. +|++-.|
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCcc
Confidence 456667888899999999 6777653
No 129
>COG4969 PilA Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.88 E-value=18 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=13.5
Q ss_pred ehHHHHHHHHHHHhcc
Q 038026 23 TISVFVAIALSLFLGF 38 (98)
Q Consensus 23 ~~sv~~~i~~~lf~~~ 38 (98)
.++++++|++|.|.+-
T Consensus 18 Ii~iLaaIaiP~YQ~y 33 (125)
T COG4969 18 IIAILAAIAIPLYQNY 33 (125)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 4689999999999874
No 130
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=29.56 E-value=34 Score=33.02 Aligned_cols=42 Identities=26% Similarity=0.588 Sum_probs=32.3
Q ss_pred CCCCCcceeccccCC---CceEee------C------------ceeeCCCCccceeEeCcccc
Q 038026 47 RCAGNGGTKCVFCND---GKMKIE------S------------GLVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 47 ~C~GtG~~~C~fC~~---G~vk~e------~------------~~~rC~~C~GaG~I~C~tC~ 88 (98)
.|-|.|-..|..|.. |..-+| . =.-+|.+|.|+|.-.|.+|.
T Consensus 497 GCWGpgp~qClsCrn~~rgg~CVe~C~~l~g~~rf~~~~~C~~ChPEC~TCnG~G~d~C~~Ca 559 (1177)
T KOG1025|consen 497 GCWGPGPDQCLSCRNFSRGGTCVEKCNLLGGEPRFVNSRECERCHPECETCNGPGADNCLQCA 559 (1177)
T ss_pred CCcCCCCccceeccccccCceehhhccccCCcccccccceecccChhhccCCCCCccchhhhh
Confidence 699999999999993 444332 0 13478899999999999985
No 131
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=28.28 E-value=37 Score=25.09 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=11.7
Q ss_pred eCCCCcc-----ceeEeCccccc
Q 038026 72 DCRVCKG-----AGFISETTKLE 89 (98)
Q Consensus 72 rC~~C~G-----aG~I~C~tC~g 89 (98)
-||.|.- .|.|.||+|.-
T Consensus 30 hCp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 30 HCPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred hCcccCCcceeeCCeEECCCCCc
Confidence 3555544 47788888863
No 132
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.82 E-value=57 Score=22.63 Aligned_cols=7 Identities=0% Similarity=-0.505 Sum_probs=3.5
Q ss_pred Ccccccc
Q 038026 84 ETTKLER 90 (98)
Q Consensus 84 C~tC~g~ 90 (98)
||.|.+.
T Consensus 89 CP~Cgs~ 95 (115)
T TIGR00100 89 CPKCHGI 95 (115)
T ss_pred CcCCcCC
Confidence 5555543
No 133
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=27.32 E-value=38 Score=31.58 Aligned_cols=33 Identities=36% Similarity=0.778 Sum_probs=18.7
Q ss_pred cCCCCCCCCcceeccccCCCceEe-eCceeeCCCCcccee
Q 038026 43 VPCDRCAGNGGTKCVFCNDGKMKI-ESGLVDCRVCKGAGF 81 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~G~vk~-e~~~~rC~~C~GaG~ 81 (98)
-+|+.|.|.|.+. -.+.. ...+..|++|.|..+
T Consensus 739 G~C~~C~G~G~~~------~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIK------IEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEE------EEeccCCCccccCccccCccc
Confidence 4577777777655 01111 123567777777654
No 134
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=27.27 E-value=21 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=16.5
Q ss_pred ehHHHHHHHHHHHhcccCCCcCCCCCC
Q 038026 23 TISVFVAIALSLFLGFKGDPVPCDRCA 49 (98)
Q Consensus 23 ~~sv~~~i~~~lf~~~r~d~~pC~~C~ 49 (98)
.++.+++++.+++++.-.+-+||+=|-
T Consensus 12 ~l~~~~~l~~A~~~q~~lg~~PC~LC~ 38 (156)
T PF02600_consen 12 ALASLAALAGALYFQYVLGLQPCPLCL 38 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTTT---SHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 445566677788888777667777664
No 135
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=27.21 E-value=63 Score=17.13 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=2.8
Q ss_pred eeccccCC
Q 038026 54 TKCVFCND 61 (98)
Q Consensus 54 ~~C~fC~~ 61 (98)
.+|..|..
T Consensus 2 ~~C~rC~~ 9 (30)
T PF06827_consen 2 EKCPRCWN 9 (30)
T ss_dssp SB-TTT--
T ss_pred CcCccCCC
Confidence 45666653
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.20 E-value=20 Score=32.74 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=7.6
Q ss_pred CcceeccccC
Q 038026 51 NGGTKCVFCN 60 (98)
Q Consensus 51 tG~~~C~fC~ 60 (98)
++-++|+.|+
T Consensus 641 K~~LkCs~Cn 650 (698)
T KOG0978|consen 641 KELLKCSVCN 650 (698)
T ss_pred HhceeCCCcc
Confidence 3567888888
No 137
>PRK09917 hypothetical protein; Provisional
Probab=26.11 E-value=28 Score=25.63 Aligned_cols=26 Identities=4% Similarity=-0.047 Sum_probs=18.7
Q ss_pred cccceEeeehHHHHHHHHHHHhcccC
Q 038026 15 LDTQTVLATISVFVAIALSLFLGFKG 40 (98)
Q Consensus 15 ~d~qt~~~~~sv~~~i~~~lf~~~r~ 40 (98)
--.||+.+++++++|+.+|.++=.|.
T Consensus 128 ~~~~t~~ia~aIA~Gi~lp~~~~~~~ 153 (157)
T PRK09917 128 NFLKASSIVGALSIGLSLPGLWLYRK 153 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33566777889999999987665443
No 138
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=25.21 E-value=29 Score=19.67 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=11.1
Q ss_pred ccccCCCceEeeCceeeCCCCcc
Q 038026 56 CVFCNDGKMKIESGLVDCRVCKG 78 (98)
Q Consensus 56 C~fC~~G~vk~e~~~~rC~~C~G 78 (98)
|..|............||+.|..
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCcCCCeeEcCCCCcEECCcCCC
Confidence 45555332222345667777753
No 139
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=25.14 E-value=24 Score=29.31 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCcceeccccCCCceEe--eCceeeCCCCccc
Q 038026 50 GNGGTKCVFCNDGKMKI--ESGLVDCRVCKGA 79 (98)
Q Consensus 50 GtG~~~C~fC~~G~vk~--e~~~~rC~~C~Ga 79 (98)
-.-|++|+.|..--.+. +.+...||+|...
T Consensus 25 e~lw~KCp~c~~~~y~~eL~~n~~vcp~c~~h 56 (294)
T COG0777 25 EGLWTKCPSCGEMLYRKELESNLKVCPKCGHH 56 (294)
T ss_pred CCceeECCCccceeeHHHHHhhhhcccccCcc
Confidence 46799999998654444 4678899998643
No 140
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.00 E-value=44 Score=23.19 Aligned_cols=7 Identities=43% Similarity=1.308 Sum_probs=3.0
Q ss_pred eCCCCcc
Q 038026 72 DCRVCKG 78 (98)
Q Consensus 72 rC~~C~G 78 (98)
+||.|.+
T Consensus 89 ~CP~Cgs 95 (114)
T PRK03681 89 RCPQCHG 95 (114)
T ss_pred cCcCcCC
Confidence 3444443
No 141
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.95 E-value=88 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=7.8
Q ss_pred CCCCccceeEeCccccccc
Q 038026 73 CRVCKGAGFISETTKLERF 91 (98)
Q Consensus 73 C~~C~GaG~I~C~tC~g~~ 91 (98)
|.+|.+. ..|..|..-|
T Consensus 30 C~~C~~~--~~C~~C~~GY 46 (96)
T PTZ00382 30 CKSCVVD--GVCGECNSGF 46 (96)
T ss_pred CcCCCCC--CccccCcCCc
Confidence 5555432 2355554333
No 142
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=46 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.556 Sum_probs=34.1
Q ss_pred cCCCCCCCCcce------eccccC-CCceEe---eCcee-eCCCCccceeEeCcccccccccc
Q 038026 43 VPCDRCAGNGGT------KCVFCN-DGKMKI---ESGLV-DCRVCKGAGFISETTKLERFHMN 94 (98)
Q Consensus 43 ~pC~~C~GtG~~------~C~fC~-~G~vk~---e~~~~-rC~~C~GaG~I~C~tC~g~~~~~ 94 (98)
..|..|.|+|.. .|..|+ .+.++. ..... .|..|.|.|.+.=.+|+...+++
T Consensus 165 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~ 227 (288)
T KOG0715|consen 165 SDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAG 227 (288)
T ss_pred cccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcch
Confidence 469999988854 388888 453332 23333 49999999988866555544443
No 143
>PRK11712 ribonuclease G; Provisional
Probab=22.46 E-value=43 Score=29.03 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.8
Q ss_pred cCCCCCCCCccee
Q 038026 43 VPCDRCAGNGGTK 55 (98)
Q Consensus 43 ~pC~~C~GtG~~~ 55 (98)
.+|+.|+|+|.++
T Consensus 403 ~~Cp~C~G~G~v~ 415 (489)
T PRK11712 403 GECPTCHGRGTVK 415 (489)
T ss_pred CCCCCCCCCCCcC
Confidence 7899999999764
No 144
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=22.16 E-value=44 Score=19.24 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=10.0
Q ss_pred ceeEeCcccccccc
Q 038026 79 AGFISETTKLERFH 92 (98)
Q Consensus 79 aG~I~C~tC~g~~~ 92 (98)
+|+|.|+.|..+++
T Consensus 3 ~g~l~C~~CG~~m~ 16 (58)
T PF13408_consen 3 SGLLRCGHCGSKMT 16 (58)
T ss_pred CCcEEcccCCcEeE
Confidence 47778888877654
No 145
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.77 E-value=69 Score=17.32 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=5.9
Q ss_pred CceeeCCCC
Q 038026 68 SGLVDCRVC 76 (98)
Q Consensus 68 ~~~~rC~~C 76 (98)
.....||+|
T Consensus 14 ~v~f~CPnC 22 (24)
T PF07754_consen 14 AVPFPCPNC 22 (24)
T ss_pred CceEeCCCC
Confidence 446677777
No 146
>PRK11827 hypothetical protein; Provisional
Probab=21.74 E-value=73 Score=20.50 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=11.6
Q ss_pred eCCCCccc-------eeEeCccccccc
Q 038026 72 DCRVCKGA-------GFISETTKLERF 91 (98)
Q Consensus 72 rC~~C~Ga-------G~I~C~tC~g~~ 91 (98)
.||.|+|. ..+.|+.|+=.|
T Consensus 10 aCP~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 10 ACPVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred ECCCCCCcCeEcCCCCeEECCccCeec
Confidence 45555543 346677776555
No 147
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=21.68 E-value=54 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=21.6
Q ss_pred eccccCCCceEeeCceeeCCCCccceeEeCccccc
Q 038026 55 KCVFCNDGKMKIESGLVDCRVCKGAGFISETTKLE 89 (98)
Q Consensus 55 ~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~g 89 (98)
.|..|....++ ..+.+|-.|. ..-+|.+|..
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~--dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDIS--GIRFPCQVCR--DYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCce--EeeEECCCCC--CcCchHHHHh
Confidence 56777765555 3566888885 5888888865
No 148
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=21.53 E-value=77 Score=22.01 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=5.7
Q ss_pred eccccCCCceEe
Q 038026 55 KCVFCNDGKMKI 66 (98)
Q Consensus 55 ~C~fC~~G~vk~ 66 (98)
.|+||...+++.
T Consensus 38 ~CpfCgk~~vkR 49 (90)
T PRK03976 38 VCPVCGRPKVKR 49 (90)
T ss_pred cCCCCCCCceEE
Confidence 355554444443
No 149
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.35 E-value=86 Score=18.62 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=4.4
Q ss_pred CceeeCCCC
Q 038026 68 SGLVDCRVC 76 (98)
Q Consensus 68 ~~~~rC~~C 76 (98)
.+..-|++|
T Consensus 32 ~g~~~Cv~C 40 (41)
T PF06677_consen 32 DGKIYCVSC 40 (41)
T ss_pred CCCEECCCC
Confidence 344455555
No 150
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=21.22 E-value=55 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=20.8
Q ss_pred eccccCCCceEeeCceeeCCCCccceeEeCcccccc
Q 038026 55 KCVFCNDGKMKIESGLVDCRVCKGAGFISETTKLER 90 (98)
Q Consensus 55 ~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~g~ 90 (98)
.|+.|+...+. ..+.+|..|. .+-+|.+|..+
T Consensus 2 ~Cd~C~~~pi~--g~RykC~~C~--d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPIT--GFRYRCLKCF--NYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCce--eeeEECCCCC--CcCchHHHHhC
Confidence 56677643222 4577888886 58888888643
No 151
>PRK00420 hypothetical protein; Validated
Probab=21.12 E-value=74 Score=22.71 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=9.3
Q ss_pred cCCCCCCC------CcceeccccC
Q 038026 43 VPCDRCAG------NGGTKCVFCN 60 (98)
Q Consensus 43 ~pC~~C~G------tG~~~C~fC~ 60 (98)
..|+.|.. .|...|+.|.
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg 47 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHG 47 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCC
Confidence 55666553 4444555554
No 152
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.12 E-value=57 Score=20.74 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=8.0
Q ss_pred eEeCccccccccc
Q 038026 81 FISETTKLERFHM 93 (98)
Q Consensus 81 ~I~C~tC~g~~~~ 93 (98)
-|.||.|...||-
T Consensus 21 iVvCp~CgapyHR 33 (54)
T PF14446_consen 21 IVVCPECGAPYHR 33 (54)
T ss_pred EEECCCCCCcccH
Confidence 3566666666663
No 153
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=21.05 E-value=33 Score=23.51 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.9
Q ss_pred eeehHHHHHHHHHHHhcccCC
Q 038026 21 LATISVFVAIALSLFLGFKGD 41 (98)
Q Consensus 21 ~~~~sv~~~i~~~lf~~~r~d 41 (98)
+++..|.++.++|+|+=.||.
T Consensus 76 ~~t~~vgvs~glPLyL~lRer 96 (97)
T PF11196_consen 76 VLTFFVGVSFGLPLYLYLRER 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 335678888899999987763
No 154
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.00 E-value=78 Score=26.31 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=38.0
Q ss_pred HHHHhcc-cC-CCcCCCCCCCCcce------eccccCCCceEeeC----ceeeCCCCccceeEeCcccccccc
Q 038026 32 LSLFLGF-KG-DPVPCDRCAGNGGT------KCVFCNDGKMKIES----GLVDCRVCKGAGFISETTKLERFH 92 (98)
Q Consensus 32 ~~lf~~~-r~-d~~pC~~C~GtG~~------~C~fC~~G~vk~e~----~~~rC~~C~GaG~I~C~tC~g~~~ 92 (98)
+++++.. +. +++.|..|...-++ .|..|.+|..+... -...|..|.+.+.-.|+.|...+.
T Consensus 61 c~~~~~~t~~~~~~~C~~C~~~~~~~~~~~~~c~~C~~G~y~~~~~C~~C~~~C~~C~~~~~~~Ct~C~~g~~ 133 (397)
T PF03302_consen 61 CSNYYCSTCGNDKKTCKKCSIGNCLTCSGDACCSECPDGYYKNGNKCVPCHESCATCSGGAPNQCTSCKPGKV 133 (397)
T ss_pred cccccccccccccccccccccccccccccCccccCCCCCccccCCCCCCCCccccccCCCCCCCCcccCCCcc
Confidence 4455543 33 55678777754443 47777776655432 356678888877777888876543
No 155
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.51 E-value=58 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.974 Sum_probs=11.3
Q ss_pred HhcccCCCcCCCCCCC
Q 038026 35 FLGFKGDPVPCDRCAG 50 (98)
Q Consensus 35 f~~~r~d~~pC~~C~G 50 (98)
||-+.-+|+.|++|.-
T Consensus 19 FYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 19 FYDLNKDPIVCPKCGT 34 (108)
T ss_pred hccCCCCCccCCCCCC
Confidence 6776667877887753
No 156
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.47 E-value=1.7e+02 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=17.6
Q ss_pred ehHHHHHHHHHHHhcc---------c----CCCcCCCCCCCC
Q 038026 23 TISVFVAIALSLFLGF---------K----GDPVPCDRCAGN 51 (98)
Q Consensus 23 ~~sv~~~i~~~lf~~~---------r----~d~~pC~~C~Gt 51 (98)
+.++++..++.+++-. + .+...|+-|.+.
T Consensus 155 ~~a~Fi~AALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~ 196 (309)
T PRK03564 155 DKAPFIWAALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSM 196 (309)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCcccccccccCCCCCCCCCCc
Confidence 4567777777776643 1 134558888654
No 157
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.40 E-value=43 Score=21.16 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=17.3
Q ss_pred CCccccccceEeeeh----HHHHHHHHHHHhc
Q 038026 10 DRPFVLDTQTVLATI----SVFVAIALSLFLG 37 (98)
Q Consensus 10 ~~~~~~d~qt~~~~~----sv~~~i~~~lf~~ 37 (98)
+.||+-|-||+=+++ +|+..+++.+.+.
T Consensus 4 ~~pF~YDy~tLrigGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 4 DDPFYYDYETLRIGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp CSGGGGCHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCccchhHhhccchHHHHHHHHHHHHHHHc
Confidence 467888999988764 3444444444443
No 158
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.24 E-value=69 Score=17.98 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=7.7
Q ss_pred eccccCCCceEeeCceeeCCCCc
Q 038026 55 KCVFCNDGKMKIESGLVDCRVCK 77 (98)
Q Consensus 55 ~C~fC~~G~vk~e~~~~rC~~C~ 77 (98)
+|..|++.....+....-|+.|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp --TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCcceeccCCEEeCCccc
Confidence 45555544444444455555553
No 159
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.03 E-value=40 Score=25.13 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=7.8
Q ss_pred cceeEeCcccccc
Q 038026 78 GAGFISETTKLER 90 (98)
Q Consensus 78 GaG~I~C~tC~g~ 90 (98)
.+|+|.||.|.++
T Consensus 29 ~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 29 ARGLVSCPVCGST 41 (148)
T ss_pred HcCCccCCCCCCC
Confidence 3566666666553
Done!