Query 038026
Match_columns 98
No_of_seqs 63 out of 65
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 98.3 3.3E-07 1.1E-11 57.5 3.3 49 42-90 11-73 (79)
2 2ctt_A DNAJ homolog subfamily 98.2 1.6E-06 5.5E-11 57.5 4.2 49 42-90 28-90 (104)
3 1nlt_A Protein YDJ1, mitochond 97.6 2E-05 6.7E-10 59.5 2.5 49 42-90 38-105 (248)
4 2ctt_A DNAJ homolog subfamily 97.2 0.0002 7E-09 47.2 2.7 39 41-83 44-94 (104)
5 1exk_A DNAJ protein; extended 96.9 0.00089 3E-08 41.6 3.4 38 42-83 28-77 (79)
6 1nlt_A Protein YDJ1, mitochond 96.0 0.0048 1.6E-07 46.4 3.6 41 41-83 53-109 (248)
7 2bx9_A Anti-trap, AT, tryptoph 95.8 0.0044 1.5E-07 37.8 2.1 27 43-83 10-36 (53)
8 3lcz_A YCZA, inhibitor of trap 93.3 0.046 1.6E-06 33.2 2.2 12 43-54 10-21 (53)
9 3lcz_A YCZA, inhibitor of trap 92.3 0.085 2.9E-06 32.0 2.4 26 54-83 10-36 (53)
10 1wii_A Hypothetical UPF0222 pr 91.3 0.073 2.5E-06 35.3 1.4 36 55-95 25-61 (85)
11 2bx9_A Anti-trap, AT, tryptoph 90.6 0.15 5.2E-06 30.9 2.3 23 68-90 7-32 (53)
12 1pft_A TFIIB, PFTFIIBN; N-term 90.4 0.13 4.5E-06 29.7 1.8 27 71-97 6-40 (50)
13 1dl6_A Transcription factor II 81.1 0.85 2.9E-05 27.7 2.0 29 70-98 11-47 (58)
14 2e6s_A E3 ubiquitin-protein li 79.6 2.3 7.8E-05 27.0 3.8 47 39-97 7-57 (77)
15 3asl_A E3 ubiquitin-protein li 78.1 2.3 7.9E-05 26.4 3.4 43 43-97 3-49 (70)
16 2ysm_A Myeloid/lymphoid or mix 72.0 4.3 0.00015 26.3 3.7 59 39-97 4-85 (111)
17 3ask_A E3 ubiquitin-protein li 71.6 3.9 0.00013 31.2 3.8 47 39-97 155-205 (226)
18 2hf1_A Tetraacyldisaccharide-1 70.4 1.6 5.5E-05 27.5 1.2 23 70-92 8-37 (68)
19 2jr6_A UPF0434 protein NMA0874 70.1 1.7 5.6E-05 27.4 1.2 22 70-91 8-36 (68)
20 3shb_A E3 ubiquitin-protein li 68.0 5.6 0.00019 25.3 3.4 47 39-97 7-57 (77)
21 2pk7_A Uncharacterized protein 67.2 2.1 7.2E-05 27.0 1.2 21 71-91 9-36 (69)
22 2jny_A Uncharacterized BCR; st 66.6 2.1 7.2E-05 27.0 1.2 23 69-91 9-38 (67)
23 2kpi_A Uncharacterized protein 64.9 2.6 8.9E-05 25.5 1.3 24 69-92 9-39 (56)
24 2js4_A UPF0434 protein BB2007; 64.8 2.4 8.3E-05 26.8 1.2 22 70-91 8-36 (70)
25 1f62_A Transcription factor WS 52.6 4.3 0.00015 23.0 0.7 25 72-96 2-30 (51)
26 2d8v_A Zinc finger FYVE domain 51.8 4.4 0.00015 26.1 0.8 24 69-94 18-41 (67)
27 2lli_A Protein AIR2; RNA surve 49.7 11 0.00036 24.9 2.4 12 41-52 3-14 (124)
28 2ct7_A Ring finger protein 31; 49.5 10 0.00034 23.8 2.2 24 69-95 42-68 (86)
29 2yrc_A Protein transport prote 48.1 9 0.00031 23.4 1.7 12 37-48 4-17 (59)
30 4bbr_M Transcription initiatio 46.6 7.5 0.00026 30.3 1.5 28 70-97 21-58 (345)
31 3k1f_M Transcription initiatio 45.5 11 0.00036 28.7 2.1 29 69-97 20-58 (197)
32 1k3x_A Endonuclease VIII; hydr 43.8 16 0.00055 27.4 2.9 33 48-88 229-261 (262)
33 2r6f_A Excinuclease ABC subuni 42.0 11 0.00036 34.1 1.9 19 72-90 755-785 (972)
34 3k7a_M Transcription initiatio 41.1 10 0.00035 29.2 1.4 28 70-97 21-58 (345)
35 2xzf_A Formamidopyrimidine-DNA 40.9 19 0.00065 27.1 2.9 35 46-88 235-269 (271)
36 1ee8_A MUTM (FPG) protein; bet 40.9 23 0.00077 26.7 3.3 33 45-77 227-262 (266)
37 1k82_A Formamidopyrimidine-DNA 38.6 22 0.00074 26.8 2.9 36 45-88 232-267 (268)
38 2e6r_A Jumonji/ARID domain-con 37.1 17 0.00057 23.4 1.8 29 69-97 15-47 (92)
39 3u6p_A Formamidopyrimidine-DNA 35.6 26 0.00088 26.5 2.9 14 49-62 241-254 (273)
40 2ysm_A Myeloid/lymphoid or mix 33.2 20 0.00068 23.1 1.7 29 69-97 6-38 (111)
41 1k81_A EIF-2-beta, probable tr 33.0 19 0.00064 19.8 1.3 29 54-82 1-33 (36)
42 2vf7_A UVRA2, excinuclease ABC 32.3 19 0.00065 31.6 1.9 11 72-82 640-650 (842)
43 2p26_A Integrin beta-2; hybrid 32.3 19 0.00066 27.6 1.7 44 47-90 197-259 (280)
44 2ffw_A Midline-1; B-BOX, ring 31.1 17 0.00059 22.5 1.1 39 50-94 27-66 (78)
45 3bz1_X Photosystem II PSBX pro 29.8 19 0.00064 22.0 1.0 22 22-43 25-46 (50)
46 3arc_X Photosystem II PSBX pro 28.6 11 0.00039 21.9 -0.1 23 21-43 14-36 (39)
47 2wwb_C SEC61BETA, protein tran 27.8 19 0.00066 24.4 0.9 22 3-24 55-77 (96)
48 2ygr_A Uvrabc system protein A 27.4 25 0.00087 31.7 1.8 19 72-90 773-803 (993)
49 2j7a_C Cytochrome C quinol deh 26.1 14 0.00049 25.2 0.0 24 39-62 37-72 (159)
50 3i2t_A Epidermal growth factor 26.0 31 0.0011 28.8 2.0 42 47-88 488-549 (551)
51 2k5r_A Uncharacterized protein 25.3 35 0.0012 22.8 1.8 13 79-91 51-63 (97)
52 2yqq_A Zinc finger HIT domain- 24.7 40 0.0014 20.5 1.9 23 69-91 11-33 (56)
53 2dlo_A Thyroid receptor-intera 24.0 45 0.0016 19.6 2.0 21 41-61 2-23 (81)
54 2bx2_L Ribonuclease E, RNAse E 23.4 29 0.00098 29.1 1.3 13 43-55 409-421 (517)
55 3v43_A Histone acetyltransfera 23.0 24 0.00081 23.0 0.7 16 81-96 26-41 (112)
56 1kx2_A Mono-heme C-type cytoch 21.9 32 0.0011 20.1 1.1 11 43-53 12-22 (81)
57 2zuq_A Disulfide bond formatio 21.8 24 0.00083 24.9 0.5 26 23-48 19-44 (176)
58 1vf5_E Protein PET L; photosyn 21.6 60 0.002 18.1 2.0 18 24-41 12-29 (32)
59 2l43_A N-teminal domain from h 21.5 36 0.0012 21.6 1.3 25 70-94 25-55 (88)
60 2bl6_A Nucleocapsid protein P1 21.1 22 0.00076 18.9 0.2 10 44-53 2-11 (37)
61 2jp3_A FXYD domain-containing 20.8 29 0.001 22.2 0.7 27 10-36 7-37 (67)
62 2ahx_A P180ERBB4, receptor tyr 20.1 28 0.00096 29.0 0.7 22 71-92 595-617 (617)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.33 E-value=3.3e-07 Score=57.52 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=39.0
Q ss_pred CcCCCCCCCCcc------eeccccC-CCceEee----CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCN-DGKMKIE----SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~-~G~vk~e----~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.+.|+.|+|+|+ ..|+.|+ .|.+... .....|+.|+|.|.+ .|++|.+.
T Consensus 11 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 73 (79)
T 1exk_A 11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp EEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred ceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCe
Confidence 467999999996 6899999 4554332 134689999999999 89999875
No 2
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.6e-06 Score=57.46 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=39.1
Q ss_pred CcCCCCCCCCcc------eeccccC-CCceEee----CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCN-DGKMKIE----SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~-~G~vk~e----~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.++|+.|+|+|+ ..|+.|+ .|.+... .....|+.|.|.|++ .|++|.++
T Consensus 28 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 90 (104)
T 2ctt_A 28 MDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGA 90 (104)
T ss_dssp CEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSSSSC
T ss_pred eeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCCCCe
Confidence 478999999994 7899999 5554433 235789999999999 69999874
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.65 E-value=2e-05 Score=59.51 Aligned_cols=49 Identities=33% Similarity=0.709 Sum_probs=37.9
Q ss_pred CcCCCCCCCCcc-----eeccccC-CCceEee--------CceeeCCCCccceeEe-----Ccccccc
Q 038026 42 PVPCDRCAGNGG-----TKCVFCN-DGKMKIE--------SGLVDCRVCKGAGFIS-----ETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~-----~~C~fC~-~G~vk~e--------~~~~rC~~C~GaG~I~-----C~tC~g~ 90 (98)
.+.|+.|+|+|+ ..|..|+ .|.+... .....|+.|.|.|++. |++|.|+
T Consensus 38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~ 105 (248)
T 1nlt_A 38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGK 105 (248)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTS
T ss_pred EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCC
Confidence 368999999995 6799999 4544321 2466899999999665 9999885
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=47.20 Aligned_cols=39 Identities=33% Similarity=0.806 Sum_probs=31.0
Q ss_pred CCcCCCCCCCCcce-----------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT-----------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~-----------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.++.|+.|+|+|.+ +|+.|+ .|++. ..+|+.|+|.|.+.
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII----ISPCVVCRGAGQAK 94 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC----SSCCSSSSSCSEEC
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC----CCcCCCCCCeeEEE
Confidence 35789999999954 799999 45543 35799999999874
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.86 E-value=0.00089 Score=41.60 Aligned_cols=38 Identities=32% Similarity=0.864 Sum_probs=29.8
Q ss_pred CcCCCCCCCCcce-----------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 42 PVPCDRCAGNGGT-----------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 42 ~~pC~~C~GtG~~-----------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
+++|+.|+|+|.+ +|+.|+ .|++. ..+|+.|+|.|.+.
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI----KDPCNKCHGHGRVE 77 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC----SSBCGGGTTSSEEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC----CCcCCCCCCeEEEe
Confidence 4689999999964 799999 45543 35799999999874
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.04 E-value=0.0048 Score=46.40 Aligned_cols=41 Identities=24% Similarity=0.652 Sum_probs=31.3
Q ss_pred CCcCCCCCCCCcce---------------eccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.++.|+.|+|+|.+ .|+.|+ .|++. .....|+.|+|.|.+.
T Consensus 53 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i--~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 53 AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII--DPKDRCKSCNGKKVEN 109 (248)
T ss_dssp TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC--CTTSBCSSSTTSCEEE
T ss_pred CCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe--ccCCCCcccCCCceEe
Confidence 35889999999963 699999 55543 2245799999999874
No 7
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=95.79 E-value=0.0044 Score=37.80 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=20.3
Q ss_pred cCCCCCCCCcceeccccCCCceEeeCceeeCCCCccceeEe
Q 038026 43 VPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
++|+.|+|+|... ...|+.|+|.|++.
T Consensus 10 ~~C~~C~GsG~~~--------------~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIE--------------GTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEET--------------TEECTTTTTSSEEE
T ss_pred ccCCCCcceeccC--------------CCCCccCCCCccEE
Confidence 5788888888763 25688888888775
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=93.27 E-value=0.046 Score=33.22 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=9.6
Q ss_pred cCCCCCCCCcce
Q 038026 43 VPCDRCAGNGGT 54 (98)
Q Consensus 43 ~pC~~C~GtG~~ 54 (98)
++|+.|+|+|..
T Consensus 10 ~~C~~C~GsG~~ 21 (53)
T 3lcz_A 10 TTCPNCNGSGRE 21 (53)
T ss_dssp EECTTTTTSCEE
T ss_pred ccCcCCcccccC
Confidence 578888888874
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=92.25 E-value=0.085 Score=32.01 Aligned_cols=26 Identities=38% Similarity=0.787 Sum_probs=13.5
Q ss_pred eeccccC-CCceEeeCceeeCCCCccceeEe
Q 038026 54 TKCVFCN-DGKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 54 ~~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
.+|+.|+ .|++.. ..|+.|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~i~----~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 10 TTCPNCNGSGREEP----EPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSCEETT----EECTTTTTSSEEE
T ss_pred ccCcCCcccccCCC----CcCCCCCCcEEEE
Confidence 3566666 333221 4566666666553
No 10
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=91.34 E-value=0.073 Score=35.35 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=26.1
Q ss_pred eccccCC-CceEeeCceeeCCCCccceeEeCcccccccccce
Q 038026 55 KCVFCND-GKMKIESGLVDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 55 ~C~fC~~-G~vk~e~~~~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
.|+||+. ..+.++... =.+.|.|.|..|..+|.+++
T Consensus 25 ~CPfCnh~~sV~vkidk-----~~~~g~l~C~~Cg~~~~~~i 61 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDR-----ARNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CCTTTCCSSCEEEEEET-----TTTEEEEEESSSCCEEEEEC
T ss_pred cCCCCCCCCeEEEEEEc-----cCCEEEEEcccCCCeEEecc
Confidence 4899994 445554322 15689999999999998865
No 11
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=90.65 E-value=0.15 Score=30.85 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.1
Q ss_pred CceeeCCCCccceeE---eCcccccc
Q 038026 68 SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 68 ~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.....|+.|.|.|.+ .|++|.++
T Consensus 7 ~~~~~C~~C~GsG~~~~~~C~~C~G~ 32 (53)
T 2bx9_A 7 DLEVACPKCERAGEIEGTPCPACSGK 32 (53)
T ss_dssp HHEEECTTTTTSSEETTEECTTTTTS
T ss_pred CccccCCCCcceeccCCCCCccCCCC
Confidence 346789999999976 69999875
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.37 E-value=0.13 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.6
Q ss_pred eeCCCCcc--------ceeEeCcccccccccceec
Q 038026 71 VDCRVCKG--------AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 71 ~rC~~C~G--------aG~I~C~tC~g~~~~~~~~ 97 (98)
..||+|++ +|.+.|+.|.-.|.+|++|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccccccc
Confidence 35777765 5889999999989888887
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=81.09 E-value=0.85 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=21.9
Q ss_pred eeeCCCCcc--------ceeEeCcccccccccceecC
Q 038026 70 LVDCRVCKG--------AGFISETTKLERFHMNVVDM 98 (98)
Q Consensus 70 ~~rC~~C~G--------aG~I~C~tC~g~~~~~~~~~ 98 (98)
...||.|++ +|-+.|+.|.--+.+|++|.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~ 47 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEEecccccc
Confidence 446777754 58888999988888888873
No 14
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.61 E-value=2.3 Score=27.01 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=33.8
Q ss_pred cCCCcCCCCCCCCcceeccccCCCceEeeCceeeCCCCc----cceeEeCcccccccccceec
Q 038026 39 KGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCK----GAGFISETTKLERFHMNVVD 97 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~----GaG~I~C~tC~g~~~~~~~~ 97 (98)
|.++..|..|..+..-.|..|. |..|. +.-+|.|-.|...||+.-++
T Consensus 7 ~~~~~~c~~C~~~~~w~C~~c~------------C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 7 GRNDTECDLCGGDPEKKCHSCS------------CRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp CCCCCCCTTTCSCSSSCCSSSS------------CSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred ccCCccChhhcCCCCeECCCCC------------CcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 4455667777776666665552 66676 56789999999999987654
No 15
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.15 E-value=2.3 Score=26.35 Aligned_cols=43 Identities=21% Similarity=0.531 Sum_probs=31.8
Q ss_pred cCCCCCCCCcceeccccCCCceEeeCceeeCCCCc----cceeEeCcccccccccceec
Q 038026 43 VPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCK----GAGFISETTKLERFHMNVVD 97 (98)
Q Consensus 43 ~pC~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~----GaG~I~C~tC~g~~~~~~~~ 97 (98)
.-|..|..+..-.|..|. |..|+ +.-+|.|-.|...||+.-++
T Consensus 3 ~~c~~c~~~~~w~C~~C~------------C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 3 PSCKHCKDDVNRLCRVCA------------CHLCGGRQDPDKQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp CSCTTTTTCTTSCCTTTS------------BTTTCCCSCGGGEEECTTTCCEEEGGGSS
T ss_pred cccccccCCCCeECCCCC------------CcCCCCcCCCCCEEEcCCCCCceecccCC
Confidence 347777777777777663 56665 56789999999999987655
No 16
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.00 E-value=4.3 Score=26.32 Aligned_cols=59 Identities=19% Similarity=0.418 Sum_probs=39.8
Q ss_pred cCCCcCCCCCCCCcc----eeccccCCC------ceEee---Ccee------eCCCCccce----eEeCcccccccccce
Q 038026 39 KGDPVPCDRCAGNGG----TKCVFCNDG------KMKIE---SGLV------DCRVCKGAG----FISETTKLERFHMNV 95 (98)
Q Consensus 39 r~d~~pC~~C~GtG~----~~C~fC~~G------~vk~e---~~~~------rC~~C~GaG----~I~C~tC~g~~~~~~ 95 (98)
.++...|..|...|. +.|..|... ....+ .+.- .|..|+..+ ++.|..|...||+.-
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGG
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHh
Confidence 356678999999997 488888732 11111 1222 455666666 899999999999865
Q ss_pred ec
Q 038026 96 VD 97 (98)
Q Consensus 96 ~~ 97 (98)
++
T Consensus 84 l~ 85 (111)
T 2ysm_A 84 LQ 85 (111)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 17
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.61 E-value=3.9 Score=31.16 Aligned_cols=47 Identities=19% Similarity=0.490 Sum_probs=32.8
Q ss_pred cCCCcCCCCCCCCcceeccccCCCceEeeCceeeCCCCc----cceeEeCcccccccccceec
Q 038026 39 KGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCK----GAGFISETTKLERFHMNVVD 97 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~----GaG~I~C~tC~g~~~~~~~~ 97 (98)
|.+...|..|+..+...|..|. |..|. +.-++.|-.|..-||+.-++
T Consensus 155 r~~~~~C~~c~~~~~w~C~~c~------------C~vC~~~~~~~~lL~CD~C~~~yH~~CL~ 205 (226)
T 3ask_A 155 RKSGPSCKHCKDDVNRLCRVCA------------CHLCGGRQDPDKQLMCDECDMAFHIYCLD 205 (226)
T ss_dssp CCCSCCCTTTTTCTTSCCTTTS------------CSSSCCCCC--CCEECSSSCCEECSCC--
T ss_pred ccCCcccccccCCcCEecCCCC------------CcCCCCCCCCCCeEEcCCCCcceeCccCC
Confidence 3444558888877777777664 77776 46789999999999987654
No 18
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=70.40 E-value=1.6 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=16.3
Q ss_pred eeeCCCCccc-------eeEeCcccccccc
Q 038026 70 LVDCRVCKGA-------GFISETTKLERFH 92 (98)
Q Consensus 70 ~~rC~~C~Ga-------G~I~C~tC~g~~~ 92 (98)
.-.||.|+|. |.+.|+.|.-.|-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 3467777764 8888888877663
No 19
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=70.15 E-value=1.7 Score=27.44 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=15.6
Q ss_pred eeeCCCCccc-------eeEeCccccccc
Q 038026 70 LVDCRVCKGA-------GFISETTKLERF 91 (98)
Q Consensus 70 ~~rC~~C~Ga-------G~I~C~tC~g~~ 91 (98)
.-.||.|+|. |.+.|+.|.-.|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3467777763 788888887666
No 20
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=67.96 E-value=5.6 Score=25.26 Aligned_cols=47 Identities=21% Similarity=0.507 Sum_probs=34.3
Q ss_pred cCCCcCCCCCCCCcceeccccCCCceEeeCceeeCCCCccce----eEeCcccccccccceec
Q 038026 39 KGDPVPCDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAG----FISETTKLERFHMNVVD 97 (98)
Q Consensus 39 r~d~~pC~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG----~I~C~tC~g~~~~~~~~ 97 (98)
..++..|.-|..++.-.|..|. |..|...+ +|.|-.|..-||+.-++
T Consensus 7 ~~~~~~c~~c~~~~~W~C~~C~------------C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 3shb_A 7 EFSGPSCKHCKDDVNRLCRVCA------------CHLCGGRQDPDKQLMCDECDMAFHIYCLD 57 (77)
T ss_dssp --CCCSCTTTTTCTTSCCTTTS------------BTTTCCCSCGGGEEECTTTCCEEETTTSS
T ss_pred ccCCccccccCCCCCCCCCCCc------------CCccCCCCCCcceeEeCCCCCccCcccCC
Confidence 3455679999999888898884 55555543 78899999999986543
No 21
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=67.18 E-value=2.1 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=14.5
Q ss_pred eeCCCCccc-------eeEeCccccccc
Q 038026 71 VDCRVCKGA-------GFISETTKLERF 91 (98)
Q Consensus 71 ~rC~~C~Ga-------G~I~C~tC~g~~ 91 (98)
-.||.|+|. |.+.|+.|.-.|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 356666653 778888887666
No 22
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=66.63 E-value=2.1 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=16.4
Q ss_pred ceeeCCCCcc-------ceeEeCccccccc
Q 038026 69 GLVDCRVCKG-------AGFISETTKLERF 91 (98)
Q Consensus 69 ~~~rC~~C~G-------aG~I~C~tC~g~~ 91 (98)
..-.||.|+| .|.+.|+.|.-.|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 3446777776 5778888887666
No 23
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=64.87 E-value=2.6 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=17.9
Q ss_pred ceeeCCCCccc-----eeEeCc--ccccccc
Q 038026 69 GLVDCRVCKGA-----GFISET--TKLERFH 92 (98)
Q Consensus 69 ~~~rC~~C~Ga-----G~I~C~--tC~g~~~ 92 (98)
..-.||.|+|. |.+.|+ .|.-.|-
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAYP 39 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEEe
Confidence 34578888887 888898 8876663
No 24
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=64.76 E-value=2.4 Score=26.78 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=15.4
Q ss_pred eeeCCCCcc-------ceeEeCccccccc
Q 038026 70 LVDCRVCKG-------AGFISETTKLERF 91 (98)
Q Consensus 70 ~~rC~~C~G-------aG~I~C~tC~g~~ 91 (98)
.-.||.|+| .|.+.|+.|.-.|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 346777776 3778888887666
No 25
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.61 E-value=4.3 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=18.3
Q ss_pred eCCCCccce----eEeCccccccccccee
Q 038026 72 DCRVCKGAG----FISETTKLERFHMNVV 96 (98)
Q Consensus 72 rC~~C~GaG----~I~C~tC~g~~~~~~~ 96 (98)
.|..|+..| +|.|-.|...||+.-+
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl 30 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCL 30 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccC
Confidence 366777666 7888888888887543
No 26
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.82 E-value=4.4 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.5
Q ss_pred ceeeCCCCccceeEeCcccccccccc
Q 038026 69 GLVDCRVCKGAGFISETTKLERFHMN 94 (98)
Q Consensus 69 ~~~rC~~C~GaG~I~C~tC~g~~~~~ 94 (98)
...||..|.| -+.|+.|.-++|++
T Consensus 18 AtlrC~gCdg--DLYC~rC~rE~H~~ 41 (67)
T 2d8v_A 18 ATLRCAGCDG--DLYCARCFREGHDN 41 (67)
T ss_dssp CCEEETTTTS--EEECSSHHHHHTTT
T ss_pred CeEEecCCCC--ceehHHHHHHHccc
Confidence 4578999986 59999999999985
No 27
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=49.66 E-value=11 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=6.1
Q ss_pred CCcCCCCCCCCc
Q 038026 41 DPVPCDRCAGNG 52 (98)
Q Consensus 41 d~~pC~~C~GtG 52 (98)
.+..|+.|...|
T Consensus 3 ~~~~C~~C~~~G 14 (124)
T 2lli_A 3 AAPKCNNCSQRG 14 (124)
T ss_dssp CSSCCSSCSSSS
T ss_pred CCCcccCCCCCC
Confidence 344455555555
No 28
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=49.45 E-value=10 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.6
Q ss_pred ceeeCCCCccceeEeCccccccc---ccce
Q 038026 69 GLVDCRVCKGAGFISETTKLERF---HMNV 95 (98)
Q Consensus 69 ~~~rC~~C~GaG~I~C~tC~g~~---~~~~ 95 (98)
..+.|+.| |..+|..|+... |.++
T Consensus 42 ~~v~C~~C---~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 42 LEATCPQC---HQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp SCEECTTT---CCEECSSSCSBCCTTTTTS
T ss_pred CceEeCCC---CCccccccCCchhhcCCCC
Confidence 35678887 688999999999 9875
No 29
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=48.14 E-value=9 Score=23.36 Aligned_cols=12 Identities=58% Similarity=1.389 Sum_probs=9.7
Q ss_pred cccCCCcCCCC--C
Q 038026 37 GFKGDPVPCDR--C 48 (98)
Q Consensus 37 ~~r~d~~pC~~--C 48 (98)
|+..+|++|.+ |
T Consensus 4 ~~~~~pvRC~r~~C 17 (59)
T 2yrc_A 4 GSSGEPVLCSRTTC 17 (59)
T ss_dssp SSCCCCCBCSCTTT
T ss_pred cCCCCCcccCCCCC
Confidence 56778899988 8
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=46.64 E-value=7.5 Score=30.27 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=20.1
Q ss_pred eeeCCCCcc----------ceeEeCcccccccccceec
Q 038026 70 LVDCRVCKG----------AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 70 ~~rC~~C~G----------aG~I~C~tC~g~~~~~~~~ 97 (98)
...||.|++ .|.+.|+.|.-=..++++|
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD 58 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBC
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccc
Confidence 446777775 5888888887666777776
No 31
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=45.51 E-value=11 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.1
Q ss_pred ceeeCCCCcc----------ceeEeCcccccccccceec
Q 038026 69 GLVDCRVCKG----------AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 69 ~~~rC~~C~G----------aG~I~C~tC~g~~~~~~~~ 97 (98)
....||.|++ .|-+.|..|.-=..++++|
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID 58 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeE
Confidence 3446777776 6888888888888888777
No 32
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=43.81 E-value=16 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=19.2
Q ss_pred CCCCcceeccccCCCceEeeCceeeCCCCccceeEeCcccc
Q 038026 48 CAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 48 C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~ 88 (98)
=.|+-+.+|+.|.+.-.+...+ |.+.-.||+||
T Consensus 229 VygR~g~pC~~CG~~I~~~~~~--------gR~t~~CP~CQ 261 (262)
T 1k3x_A 229 VFHRDGEPCERCGSIIEKTTLS--------SRPFYWCPGCQ 261 (262)
T ss_dssp STTCTTSBCTTTCCBCEEEEET--------TEEEEECTTTC
T ss_pred EcCCCcCCCCCCCCEeEEEEEC--------CCCeEECCCCC
Confidence 4577778888887553333322 44455555555
No 33
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=42.04 E-value=11 Score=34.05 Aligned_cols=19 Identities=26% Similarity=0.636 Sum_probs=13.0
Q ss_pred eCCCCccceeE------------eCcccccc
Q 038026 72 DCRVCKGAGFI------------SETTKLER 90 (98)
Q Consensus 72 rC~~C~GaG~I------------~C~tC~g~ 90 (98)
||++|+|.|.+ .|..|.|.
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~ 785 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGK 785 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTC
T ss_pred cccccccccceeeehhccccccccccccccc
Confidence 67777777775 57777664
No 34
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=41.07 E-value=10 Score=29.22 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=19.9
Q ss_pred eeeCCCCcc----------ceeEeCcccccccccceec
Q 038026 70 LVDCRVCKG----------AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 70 ~~rC~~C~G----------aG~I~C~tC~g~~~~~~~~ 97 (98)
...||.|.. .|.+.|+.|.-=..++++|
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 58 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEccccccc
Confidence 446777655 4777888888777777776
No 35
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=40.91 E-value=19 Score=27.10 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=21.6
Q ss_pred CCCCCCcceeccccCCCceEeeCceeeCCCCccceeEeCcccc
Q 038026 46 DRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 46 ~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~ 88 (98)
..-.|+.+.+|+.|.+.-.+...+ |.+.-.||+||
T Consensus 235 ~~VygR~G~pC~~CG~~I~~~~~~--------gR~t~~CP~CQ 269 (271)
T 2xzf_A 235 LQVYGKTGEKCSRCGAEIQKIKVA--------GRGTHFCPVCQ 269 (271)
T ss_dssp CSSTTCTTSBCTTTCCBCEEEEET--------TEEEEECTTTS
T ss_pred EEEccCCCCCCCCCCCEeeEEEEC--------CCceEECCCCC
Confidence 367788888999997653333322 44555566665
No 36
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=40.89 E-value=23 Score=26.72 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=20.2
Q ss_pred CCCCCCCcceeccccCCCceEeeC---ceeeCCCCc
Q 038026 45 CDRCAGNGGTKCVFCNDGKMKIES---GLVDCRVCK 77 (98)
Q Consensus 45 C~~C~GtG~~~C~fC~~G~vk~e~---~~~rC~~C~ 77 (98)
=..-.|+.+.+|+.|.+.-.+... ...-||+|+
T Consensus 227 ~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 227 RHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp GCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred eEEEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 346778888899999765444432 344455554
No 37
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=38.57 E-value=22 Score=26.79 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=21.4
Q ss_pred CCCCCCCcceeccccCCCceEeeCceeeCCCCccceeEeCcccc
Q 038026 45 CDRCAGNGGTKCVFCNDGKMKIESGLVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 45 C~~C~GtG~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~ 88 (98)
=..-.|+-+.+|+.|.+.-.+...+ |.+.-.||+||
T Consensus 232 ~~~VygR~g~pC~~CG~~I~~~~~~--------gR~t~~CP~CQ 267 (268)
T 1k82_A 232 ELQVYGRKGEPCRVCGTPIVATKHA--------QRATFYCRQCQ 267 (268)
T ss_dssp GCSSTTCTTSBCTTTCCBCEEEEET--------TEEEEECTTTC
T ss_pred eEEEcccCCCCCCCCCCEeeEEEEC--------CCceEECCCCC
Confidence 3467788888898887653333321 34445555555
No 38
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.08 E-value=17 Score=23.41 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=20.9
Q ss_pred ceeeCCCCccce----eEeCcccccccccceec
Q 038026 69 GLVDCRVCKGAG----FISETTKLERFHMNVVD 97 (98)
Q Consensus 69 ~~~rC~~C~GaG----~I~C~tC~g~~~~~~~~ 97 (98)
+...|..|...+ +|.|-.|..-||+.-++
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 445677887776 78888888888876443
No 39
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.57 E-value=26 Score=26.50 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=8.4
Q ss_pred CCCcceeccccCCC
Q 038026 49 AGNGGTKCVFCNDG 62 (98)
Q Consensus 49 ~GtG~~~C~fC~~G 62 (98)
+|+-+.+|+.|.+.
T Consensus 241 ygR~g~pC~~CG~~ 254 (273)
T 3u6p_A 241 YGRQGNPCKRCGTP 254 (273)
T ss_dssp TTCTTSBCTTTCCB
T ss_pred eCCCcCCCCCCCCe
Confidence 45555667777654
No 40
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.17 E-value=20 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.6
Q ss_pred ceeeCCCCcccee----EeCcccccccccceec
Q 038026 69 GLVDCRVCKGAGF----ISETTKLERFHMNVVD 97 (98)
Q Consensus 69 ~~~rC~~C~GaG~----I~C~tC~g~~~~~~~~ 97 (98)
+...|..|...|. |.|..|...||..-++
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 3456778877775 7999999999976443
No 41
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=33.04 E-value=19 Score=19.85 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=19.1
Q ss_pred eeccccCC--CceEeeC--ceeeCCCCccceeE
Q 038026 54 TKCVFCND--GKMKIES--GLVDCRVCKGAGFI 82 (98)
Q Consensus 54 ~~C~fC~~--G~vk~e~--~~~rC~~C~GaG~I 82 (98)
+.|..|+. ..+..+. -..+|..|...+.|
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcccc
Confidence 35788884 3444443 46789999887765
No 42
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=32.32 E-value=19 Score=31.59 Aligned_cols=11 Identities=36% Similarity=1.286 Sum_probs=5.6
Q ss_pred eCCCCccceeE
Q 038026 72 DCRVCKGAGFI 82 (98)
Q Consensus 72 rC~~C~GaG~I 82 (98)
||++|+|.|.+
T Consensus 640 ~c~~c~g~G~~ 650 (842)
T 2vf7_A 640 RCEHCQGEGWV 650 (842)
T ss_dssp BCTTTTTCSEE
T ss_pred ccccccCCCcc
Confidence 35555555544
No 43
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=32.28 E-value=19 Score=27.63 Aligned_cols=44 Identities=30% Similarity=0.515 Sum_probs=32.3
Q ss_pred CCCCCcceeccccC-CCceEee------Cce------eeCC------CCccceeEeCcccccc
Q 038026 47 RCAGNGGTKCVFCN-DGKMKIE------SGL------VDCR------VCKGAGFISETTKLER 90 (98)
Q Consensus 47 ~C~GtG~~~C~fC~-~G~vk~e------~~~------~rC~------~C~GaG~I~C~tC~g~ 90 (98)
.|+|+|...|..|. ...++-+ ... ..|+ .|.|.|.=.|-+|.+.
T Consensus 197 ~C~g~G~~~CG~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG~C~C~ 259 (280)
T 2p26_A 197 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCH 259 (280)
T ss_dssp GGGGSEEEETTEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETTEEEEC
T ss_pred ccCCCCeECCCceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCCeeECc
Confidence 38999999999988 4333321 121 2686 5999999999999984
No 44
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.13 E-value=17 Score=22.49 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCcceeccccCCCc-eEeeCceeeCCCCccceeEeCcccccccccc
Q 038026 50 GNGGTKCVFCNDGK-MKIESGLVDCRVCKGAGFISETTKLERFHMN 94 (98)
Q Consensus 50 GtG~~~C~fC~~G~-vk~e~~~~rC~~C~GaG~I~C~tC~g~~~~~ 94 (98)
|.+.+.|++|.+.+ . .....|..|... +|.+|+..+|.+
T Consensus 27 ~~~~v~C~~C~~~~~~---~A~ksCl~C~~s---~C~~hl~~~H~~ 66 (78)
T 2ffw_A 27 SAEKVLCQFCDQDPAQ---DAVKTCVTCEVS---YCDECLKATHPN 66 (78)
T ss_dssp SSCCCBCSSCCSSSCC---BCCEEETTTTEE---ECHHHHHHHSCC
T ss_pred CCCCccCCcCCCCCCC---CCeeEccCccch---hhhhhhHhhcCC
Confidence 56678899998433 2 245678888765 788888766654
No 45
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=29.75 E-value=19 Score=21.98 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=16.1
Q ss_pred eehHHHHHHHHHHHhcccCCCc
Q 038026 22 ATISVFVAIALSLFLGFKGDPV 43 (98)
Q Consensus 22 ~~~sv~~~i~~~lf~~~r~d~~ 43 (98)
+++-|+++|+.+|++=++.|++
T Consensus 25 aG~vVvv~i~~aLi~VSq~D~v 46 (50)
T 3bz1_X 25 SGAVVLGLTFAVLIAISQIDKV 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHheeeeccCcc
Confidence 3455566788888888888875
No 46
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=28.63 E-value=11 Score=21.86 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=15.7
Q ss_pred eeehHHHHHHHHHHHhcccCCCc
Q 038026 21 LATISVFVAIALSLFLGFKGDPV 43 (98)
Q Consensus 21 ~~~~sv~~~i~~~lf~~~r~d~~ 43 (98)
++++-|+++|+.+|++=++.|++
T Consensus 14 ~aG~vvvv~i~~ali~VSq~D~v 36 (39)
T 3arc_X 14 LSGAVVLGLTFAVLIAISQIDKV 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHheeEeccCcc
Confidence 34455566688888887777764
No 47
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=27.85 E-value=19 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=13.3
Q ss_pred eeeeeccCCc-cccccceEeeeh
Q 038026 3 LLSRFEFDRP-FVLDTQTVLATI 24 (98)
Q Consensus 3 ~~~~~~~~~~-~~~d~qt~~~~~ 24 (98)
|+-+|.-|.+ +.+|.+++++..
T Consensus 55 llRfY~dds~GlKV~P~~VLv~s 77 (96)
T 2wwb_C 55 MWRFYTEDSPGLKVGPVPVLVMS 77 (96)
T ss_dssp ------CCSCCCCCSSCSHHHHH
T ss_pred eeeeeecCCCceEECCEEehhhH
Confidence 5667888887 899999998843
No 48
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=27.43 E-value=25 Score=31.70 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=12.9
Q ss_pred eCCCCccceeE------------eCcccccc
Q 038026 72 DCRVCKGAGFI------------SETTKLER 90 (98)
Q Consensus 72 rC~~C~GaG~I------------~C~tC~g~ 90 (98)
||++|+|.|.+ .|..|.+.
T Consensus 773 rC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~ 803 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFLPDVYVPCEVCQGA 803 (993)
T ss_dssp BCTTTTSSSEEEECCTTSCCEEEECTTTTTC
T ss_pred cccccccccceeehhhccccceeeehhcccc
Confidence 67777777765 47777763
No 49
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=26.07 E-value=14 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=17.9
Q ss_pred cCCCcCCCCCCCCc-----c-------eeccccCCC
Q 038026 39 KGDPVPCDRCAGNG-----G-------TKCVFCNDG 62 (98)
Q Consensus 39 r~d~~pC~~C~GtG-----~-------~~C~fC~~G 62 (98)
..++..|..||... | ..|.-|+..
T Consensus 37 ~~~~~~C~~CH~~~~~~~~~~~s~H~~~~C~~CH~p 72 (159)
T 2j7a_C 37 TDQRPFCTSCHIMNPVGVTHKLSGHANISCNDCHAP 72 (159)
T ss_dssp TTSHHHHTTSGGGHHHHHHHHHSTTTTSCTHHHHSC
T ss_pred cCCCchHHhcCCChhHHHHhccCCCCCCcCccccCC
Confidence 56667899999752 2 579999943
No 50
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=26.00 E-value=31 Score=28.85 Aligned_cols=42 Identities=31% Similarity=0.634 Sum_probs=25.9
Q ss_pred CCCCCcceeccccCC---CceEee-----C-----c-------eeeCCCCccceeEeCcccc
Q 038026 47 RCAGNGGTKCVFCND---GKMKIE-----S-----G-------LVDCRVCKGAGFISETTKL 88 (98)
Q Consensus 47 ~C~GtG~~~C~fC~~---G~vk~e-----~-----~-------~~rC~~C~GaG~I~C~tC~ 88 (98)
.|.|.|...|..|.. ++.-++ . . ...|.+|.|+|.--|..|+
T Consensus 488 gC~Gpgp~~C~sC~~~~~~~~Cv~~C~~~~g~y~~~~~~C~~Ch~~C~tC~G~~~~~C~sC~ 549 (551)
T 3i2t_A 488 GCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECV 549 (551)
T ss_dssp CBSSSSTTCBSSBSSEEETTEEESCSCSSSCCCCCSSSCCCCCCSSCSSBCC---CCBSSCC
T ss_pred CCCCCCCCceeECcccCCCCCccccCCCCCCcccCCCCcccCCCCcccCCCCcCcCcccccC
Confidence 899999999999984 222221 0 1 3356677777777777775
No 51
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.27 E-value=35 Score=22.81 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=9.6
Q ss_pred ceeEeCccccccc
Q 038026 79 AGFISETTKLERF 91 (98)
Q Consensus 79 aG~I~C~tC~g~~ 91 (98)
.|.+.|+.|.-.|
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 3677888887666
No 52
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.69 E-value=40 Score=20.47 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=15.4
Q ss_pred ceeeCCCCccceeEeCccccccc
Q 038026 69 GLVDCRVCKGAGFISETTKLERF 91 (98)
Q Consensus 69 ~~~rC~~C~GaG~I~C~tC~g~~ 91 (98)
....|..|.-..+-.||.|.-+|
T Consensus 11 ~~~~C~vC~~~~kY~CPrC~~~y 33 (56)
T 2yqq_A 11 STVVCVICLEKPKYRCPACRVPY 33 (56)
T ss_dssp CCCCCTTTCSCCSEECTTTCCEE
T ss_pred CCCccCcCcCCCeeeCCCCCCCe
Confidence 34457777777777777776654
No 53
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.02 E-value=45 Score=19.61 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=16.7
Q ss_pred CCcC-CCCCCCCcceeccccCC
Q 038026 41 DPVP-CDRCAGNGGTKCVFCND 61 (98)
Q Consensus 41 d~~p-C~~C~GtG~~~C~fC~~ 61 (98)
|.++ |++|.-....+|..|+.
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~ 23 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQ 23 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCC
T ss_pred cCCEECHHHhhcCCCccccCCC
Confidence 4444 99998888899999994
No 54
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=23.39 E-value=29 Score=29.13 Aligned_cols=13 Identities=38% Similarity=1.014 Sum_probs=10.8
Q ss_pred cCCCCCCCCccee
Q 038026 43 VPCDRCAGNGGTK 55 (98)
Q Consensus 43 ~pC~~C~GtG~~~ 55 (98)
.+|+.|+|+|.++
T Consensus 409 ~~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 409 HVCPRCSGTGTVR 421 (517)
T ss_dssp CCCSSSSSSSCCC
T ss_pred CcCCCcCCceeEC
Confidence 5899999999765
No 55
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.03 E-value=24 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=10.1
Q ss_pred eEeCccccccccccee
Q 038026 81 FISETTKLERFHMNVV 96 (98)
Q Consensus 81 ~I~C~tC~g~~~~~~~ 96 (98)
+|.|.+|...||..-+
T Consensus 26 Ll~C~~C~~~~H~~Cl 41 (112)
T 3v43_A 26 LISCADCGNSGHPSCL 41 (112)
T ss_dssp CEECTTTCCEECHHHH
T ss_pred ceEhhhcCCCCCCchh
Confidence 6667777777765433
No 56
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=21.93 E-value=32 Score=20.08 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.9
Q ss_pred cCCCCCCCCcc
Q 038026 43 VPCDRCAGNGG 53 (98)
Q Consensus 43 ~pC~~C~GtG~ 53 (98)
+.|..|||.+.
T Consensus 12 ~~Ca~CHg~~~ 22 (81)
T 1kx2_A 12 KACTVCHSMGV 22 (81)
T ss_dssp HSTTSSTTTTG
T ss_pred HHHHHHcCCCC
Confidence 46999999865
No 57
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=21.81 E-value=24 Score=24.88 Aligned_cols=26 Identities=12% Similarity=0.122 Sum_probs=17.9
Q ss_pred ehHHHHHHHHHHHhcccCCCcCCCCC
Q 038026 23 TISVFVAIALSLFLGFKGDPVPCDRC 48 (98)
Q Consensus 23 ~~sv~~~i~~~lf~~~r~d~~pC~~C 48 (98)
+++.+++++.+++++.-..-+||+=|
T Consensus 19 ~l~~~~~l~~Al~fQ~v~gl~PC~LC 44 (176)
T 2zuq_A 19 AFTALALELTALWFQHVMLLKPSVLC 44 (176)
T ss_dssp HHHTHHHHHHHHHHHHTSCCCCCTTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHhH
Confidence 44555556777888766667888776
No 58
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=21.61 E-value=60 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhcccCC
Q 038026 24 ISVFVAIALSLFLGFKGD 41 (98)
Q Consensus 24 ~sv~~~i~~~lf~~~r~d 41 (98)
.+++-++|+-+|+|+|.-
T Consensus 12 l~~~f~iA~GL~fGlrsi 29 (32)
T 1vf5_E 12 IALFFGIAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578889999999999864
No 59
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.54 E-value=36 Score=21.64 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=15.2
Q ss_pred eeeCCCCccc------eeEeCcccccccccc
Q 038026 70 LVDCRVCKGA------GFISETTKLERFHMN 94 (98)
Q Consensus 70 ~~rC~~C~Ga------G~I~C~tC~g~~~~~ 94 (98)
-..|..|... -+|.|-.|...||+.
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~ 55 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQE 55 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHH
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcc
Confidence 3456666544 366677777777654
No 60
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=21.14 E-value=22 Score=18.91 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=4.7
Q ss_pred CCCCCCCCcc
Q 038026 44 PCDRCAGNGG 53 (98)
Q Consensus 44 pC~~C~GtG~ 53 (98)
.|++|...|-
T Consensus 2 ~C~~Cg~~GH 11 (37)
T 2bl6_A 2 TCYNCGKPGH 11 (37)
T ss_dssp CBSSSCCSSC
T ss_pred cccccCCCCc
Confidence 3555544443
No 61
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.83 E-value=29 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=18.1
Q ss_pred CCccccccceEeeeh----HHHHHHHHHHHh
Q 038026 10 DRPFVLDTQTVLATI----SVFVAIALSLFL 36 (98)
Q Consensus 10 ~~~~~~d~qt~~~~~----sv~~~i~~~lf~ 36 (98)
+.||+-|-|+|=+++ +|+..+++.+.+
T Consensus 7 ~dpF~YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 7 GSPFYYDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp TSGGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHheecchhhHHHHHHHHHHHHH
Confidence 578999999998854 444444555554
No 62
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=20.15 E-value=28 Score=29.04 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=18.0
Q ss_pred eeCC-CCccceeEeCcccccccc
Q 038026 71 VDCR-VCKGAGFISETTKLERFH 92 (98)
Q Consensus 71 ~rC~-~C~GaG~I~C~tC~g~~~ 92 (98)
..|+ .|.|.+.--|.+|-..||
T Consensus 595 ~~C~~~C~Gp~~~~C~sC~~~y~ 617 (617)
T 2ahx_A 595 PNCTQGCNGPTSHDCIYYPWTGH 617 (617)
T ss_dssp TTCTTCBSSSSTTCBCCCTTSCC
T ss_pred ccccccCCCCCCCcCCCCCCCCC
Confidence 3587 799999999999987776
Done!