Query 038026
Match_columns 98
No_of_seqs 63 out of 65
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 11:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038026.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038026hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlta3 g.54.1.1 (A:139-212) M 98.1 6.6E-07 4.8E-11 55.6 2.5 48 43-90 3-69 (74)
2 d1exka_ g.54.1.1 (A:) Cysteine 98.0 1.5E-06 1.1E-10 54.3 3.3 49 42-90 11-73 (79)
3 d1exka_ g.54.1.1 (A:) Cysteine 96.9 0.00025 1.8E-08 43.7 2.7 39 41-83 27-77 (79)
4 d1nlta3 g.54.1.1 (A:139-212) M 96.9 0.00046 3.3E-08 42.2 3.7 40 41-82 17-72 (74)
5 d1wiia_ g.41.3.4 (A:) Hypothet 90.5 0.04 2.9E-06 35.3 1.2 36 55-95 25-61 (85)
6 d1m1qa_ a.138.1.3 (A:) Flavocy 90.4 0.026 1.9E-06 33.9 0.2 47 44-90 13-80 (90)
7 d1pfta_ g.41.3.1 (A:) Transcri 78.8 0.53 3.9E-05 26.7 2.0 19 79-97 22-40 (50)
8 d1dl6a_ g.41.3.1 (A:) Transcri 69.4 1.2 9E-05 25.8 2.0 29 69-97 10-46 (58)
9 d1k3xa3 g.39.1.8 (A:223-262) E 62.3 3.3 0.00024 22.2 2.8 13 50-62 9-21 (40)
10 d2ct7a1 g.44.1.4 (A:8-80) Ring 61.0 4.1 0.0003 23.5 3.3 37 55-94 20-60 (73)
11 d1f62a_ g.50.1.2 (A:) Williams 59.9 1.4 9.9E-05 23.8 0.8 23 72-94 2-28 (51)
12 d2d8va1 g.43.1.1 (A:8-61) Zinc 58.1 1.4 0.0001 25.9 0.8 26 68-95 10-35 (54)
13 d2pila_ d.24.1.1 (A:) Pilin Gc 55.0 1.5 0.00011 26.1 0.5 16 23-38 12-27 (158)
14 d2ctda1 g.37.1.1 (A:8-60) Zinc 54.3 1.9 0.00014 25.3 0.8 11 79-89 25-35 (53)
15 d2dj8a1 g.85.1.1 (A:8-54) Zinc 51.5 3.6 0.00026 22.5 1.7 22 69-90 7-28 (47)
16 d1tdza3 g.39.1.8 (A:225-271) D 47.5 8.4 0.00061 21.0 2.9 13 49-61 14-26 (47)
17 d1s3ga2 g.41.2.1 (A:126-160) M 47.0 2.8 0.0002 22.1 0.7 15 80-94 1-15 (35)
18 d1k82a3 g.39.1.8 (A:225-268) D 46.6 8.8 0.00064 20.7 2.9 14 49-62 12-25 (44)
19 d1ee8a3 g.39.1.8 (A:211-266) D 45.5 11 0.00081 21.1 3.3 14 49-62 21-34 (56)
20 d1akya2 g.41.2.1 (A:131-168) M 40.9 4.5 0.00033 21.7 0.9 15 80-94 1-15 (38)
21 d2dana1 g.85.1.1 (A:8-54) Zinc 40.3 6.3 0.00046 21.5 1.6 18 72-89 10-27 (47)
22 d1r2za3 g.39.1.8 (A:229-274) D 39.8 13 0.00094 20.0 2.9 13 49-61 14-26 (46)
23 d1zina2 g.41.2.1 (A:126-160) M 38.9 4.1 0.0003 21.5 0.6 15 80-94 1-15 (35)
24 d2f9yb1 c.14.1.4 (B:23-285) Ac 36.1 3.3 0.00024 29.3 -0.2 29 53-81 2-32 (263)
25 d2jw6a1 g.85.1.1 (A:503-540) Z 31.7 10 0.00073 19.7 1.4 17 73-89 2-18 (38)
26 d1weva_ g.50.1.2 (A:) PHD fing 26.2 16 0.0011 21.1 1.8 26 71-96 17-48 (88)
27 d2bi6h1 g.3.12.1 (H:8-31) Brom 25.2 9.8 0.00071 19.0 0.6 12 83-94 10-21 (26)
28 d2exfa1 g.40.1.1 (A:12-53) HIV 23.9 10 0.00073 20.1 0.5 9 72-80 24-32 (42)
29 d1e4va2 g.41.2.1 (A:122-156) M 23.3 10 0.00074 19.8 0.4 15 80-94 1-15 (35)
30 d1vqoz1 g.41.8.1 (Z:10-82) Rib 22.6 26 0.0019 21.1 2.3 23 55-77 29-52 (73)
31 d2hi7b1 a.29.15.1 (B:14-162) D 22.6 12 0.00086 23.7 0.7 25 24-48 7-31 (149)
32 d1v54f_ g.41.5.3 (F:) Cytochro 22.5 20 0.0015 22.4 1.9 40 37-77 41-86 (98)
33 d2fiya1 e.59.1.1 (A:19-308) Fd 22.5 35 0.0026 24.5 3.5 7 44-50 166-172 (290)
34 d1zbdb_ g.50.1.1 (B:) Effector 21.7 20 0.0015 22.2 1.7 35 52-89 47-81 (124)
35 d1kx7a_ a.3.1.1 (A:) Mono-heme 21.5 14 0.001 20.6 0.9 12 43-54 12-23 (81)
36 d1neea2 g.59.1.1 (A:99-135) Zi 21.3 24 0.0017 18.7 1.7 28 53-80 1-32 (37)
37 d1v87a_ g.44.1.1 (A:) Deltex p 20.7 14 0.00099 22.1 0.7 15 80-94 81-95 (114)
38 d1d0qa_ g.41.3.2 (A:) Zinc-bin 20.2 31 0.0022 20.7 2.3 29 53-81 36-68 (102)
No 1
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.09 E-value=6.6e-07 Score=55.55 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=37.8
Q ss_pred cCCCCCCCCcce-----eccccC-CCceEee--------CceeeCCCCccceeE-----eCcccccc
Q 038026 43 VPCDRCAGNGGT-----KCVFCN-DGKMKIE--------SGLVDCRVCKGAGFI-----SETTKLER 90 (98)
Q Consensus 43 ~pC~~C~GtG~~-----~C~fC~-~G~vk~e--------~~~~rC~~C~GaG~I-----~C~tC~g~ 90 (98)
+.|+.|+|+|+. .|..|+ .|.+... .....|+.|+|.|++ .|+.|.|.
T Consensus 3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~ 69 (74)
T d1nlta3 3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGK 69 (74)
T ss_dssp EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTS
T ss_pred cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCe
Confidence 679999999964 499999 5655542 135689999999987 59999986
No 2
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=98.04 E-value=1.5e-06 Score=54.33 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=37.8
Q ss_pred CcCCCCCCCCcc------eeccccC-CCceEee----CceeeCCCCccceeE---eCcccccc
Q 038026 42 PVPCDRCAGNGG------TKCVFCN-DGKMKIE----SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 42 ~~pC~~C~GtG~------~~C~fC~-~G~vk~e----~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.++|+.|+|+|+ ..|..|+ .|.+... ...+.|+.|+|.|++ .|++|.++
T Consensus 11 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 73 (79)
T d1exka_ 11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp EEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred eccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCc
Confidence 367999999985 5599999 5554432 245689999999998 79999875
No 3
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=96.90 E-value=0.00025 Score=43.74 Aligned_cols=39 Identities=33% Similarity=0.945 Sum_probs=30.6
Q ss_pred CCcCCCCCCCCccee-----------ccccCC-CceEeeCceeeCCCCccceeEe
Q 038026 41 DPVPCDRCAGNGGTK-----------CVFCND-GKMKIESGLVDCRVCKGAGFIS 83 (98)
Q Consensus 41 d~~pC~~C~GtG~~~-----------C~fC~~-G~vk~e~~~~rC~~C~GaG~I~ 83 (98)
+++.|..|+|+|.+. |+.|++ |++ .+ .+|+.|+|.|.|.
T Consensus 27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~-i~---~~C~~C~G~G~v~ 77 (79)
T d1exka_ 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL-IK---DPCNKCHGHGRVE 77 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE-CS---SBCGGGTTSSEEE
T ss_pred cceeCCCccceeEEEEecccceeeEECcccCcceeE-CC---CCCCCCCCceEee
Confidence 567799999999764 999994 544 32 4799999999874
No 4
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.87 E-value=0.00046 Score=42.21 Aligned_cols=40 Identities=25% Similarity=0.625 Sum_probs=30.1
Q ss_pred CCcCCCCCCCCcce---------------eccccC-CCceEeeCceeeCCCCccceeE
Q 038026 41 DPVPCDRCAGNGGT---------------KCVFCN-DGKMKIESGLVDCRVCKGAGFI 82 (98)
Q Consensus 41 d~~pC~~C~GtG~~---------------~C~fC~-~G~vk~e~~~~rC~~C~GaG~I 82 (98)
.+..|+.|+|+|.+ +|+.|+ .|++.. ...+|+.|+|+|.|
T Consensus 17 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v 72 (74)
T d1nlta3 17 AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--PKDRCKSCNGKKVE 72 (74)
T ss_dssp TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--TTSBCSSSTTSCEE
T ss_pred CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC--CCCCCCCCCCeeEe
Confidence 35679999999963 499999 455433 22379999999976
No 5
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.53 E-value=0.04 Score=35.33 Aligned_cols=36 Identities=31% Similarity=0.606 Sum_probs=25.5
Q ss_pred eccccC-CCceEeeCceeeCCCCccceeEeCcccccccccce
Q 038026 55 KCVFCN-DGKMKIESGLVDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 55 ~C~fC~-~G~vk~e~~~~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
.|+||+ ...+.++.... .+.|.|.|..|..+|.+.+
T Consensus 25 ~CPfCnh~~sV~vk~dkk-----~~~g~l~C~vCg~~~~~~i 61 (85)
T d1wiia_ 25 TCPFCNHEKSCDVKMDRA-----RNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CCTTTCCSSCEEEEEETT-----TTEEEEEESSSCCEEEEEC
T ss_pred cCCCCCCCCeEEEEEEec-----CCEEEEEEecCCCeEEecc
Confidence 488888 55555543222 2789999999999988764
No 6
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}
Probab=90.43 E-value=0.026 Score=33.93 Aligned_cols=47 Identities=15% Similarity=0.385 Sum_probs=32.4
Q ss_pred CCCCCCCCcce---------eccccCCCceEe-e--------CceeeCCCCccceeE---eCcccccc
Q 038026 44 PCDRCAGNGGT---------KCVFCNDGKMKI-E--------SGLVDCRVCKGAGFI---SETTKLER 90 (98)
Q Consensus 44 pC~~C~GtG~~---------~C~fC~~G~vk~-e--------~~~~rC~~C~GaG~I---~C~tC~g~ 90 (98)
.|..|+++|.. .|..|++..... . ..-..|..|.+.|.. .|.+|.+.
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~ 80 (90)
T d1m1qa_ 13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDD 80 (90)
T ss_dssp CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSS
T ss_pred CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCC
Confidence 69999998853 499999433222 1 234677778887764 79988653
No 7
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=78.84 E-value=0.53 Score=26.66 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=14.2
Q ss_pred ceeEeCcccccccccceec
Q 038026 79 AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 79 aG~I~C~tC~g~~~~~~~~ 97 (98)
.|.+.|+.|.-=..+|++|
T Consensus 22 ~Ge~vC~~CG~Viee~~iD 40 (50)
T d1pfta_ 22 RGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp TTEEEESSSCCBCCCCCCC
T ss_pred CCeEecccCCcEecccccc
Confidence 4777788887777777776
No 8
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.45 E-value=1.2 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.044 Sum_probs=18.5
Q ss_pred ceeeCCCCcc--------ceeEeCcccccccccceec
Q 038026 69 GLVDCRVCKG--------AGFISETTKLERFHMNVVD 97 (98)
Q Consensus 69 ~~~rC~~C~G--------aG~I~C~tC~g~~~~~~~~ 97 (98)
...+||+|.. .|.+.|..|.--..++++|
T Consensus 10 ~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~~ID 46 (58)
T d1dl6a_ 10 PRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVID 46 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCC
T ss_pred cccCCCCCCCCCEEEECCCCcEecccCCCEecccccc
Confidence 3445555543 3677777777666777776
No 9
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=62.29 E-value=3.3 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=7.7
Q ss_pred CCcceeccccCCC
Q 038026 50 GNGGTKCVFCNDG 62 (98)
Q Consensus 50 GtG~~~C~fC~~G 62 (98)
|+-+.+|..|.+.
T Consensus 9 gR~g~pC~~C~~~ 21 (40)
T d1k3xa3 9 HRDGEPCERCGSI 21 (40)
T ss_dssp TCTTSBCTTTCCB
T ss_pred CCCCCccCcCCCE
Confidence 4555666677643
No 10
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.01 E-value=4.1 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=23.6
Q ss_pred eccccCCCceEee-CceeeCCCCccceeEeCccccccc---ccc
Q 038026 55 KCVFCNDGKMKIE-SGLVDCRVCKGAGFISETTKLERF---HMN 94 (98)
Q Consensus 55 ~C~fC~~G~vk~e-~~~~rC~~C~GaG~I~C~tC~g~~---~~~ 94 (98)
.|+.|+..-++.+ -....|+.| |..+|..|..+. |..
T Consensus 20 ~CP~C~~~~~~~~~~~~~~C~~C---~~~fC~~C~~~w~~~H~~ 60 (73)
T d2ct7a1 20 WCAQCSFGFIYEREQLEATCPQC---HQTFCVRCKRQWEEQHRG 60 (73)
T ss_dssp CCSSSCCCEECCCSCSCEECTTT---CCEECSSSCSBCCTTTTT
T ss_pred CCCCCCCEeEECCCCCEEEcCCC---CCeECcccCcchhcCCCC
Confidence 3455554322222 246678877 578999999987 765
No 11
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.93 E-value=1.4 Score=23.82 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=17.7
Q ss_pred eCCCCccce----eEeCcccccccccc
Q 038026 72 DCRVCKGAG----FISETTKLERFHMN 94 (98)
Q Consensus 72 rC~~C~GaG----~I~C~tC~g~~~~~ 94 (98)
||..|+-.+ +|.|..|..-||..
T Consensus 2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~ 28 (51)
T d1f62a_ 2 RCKVCRKKGEDDKLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHH
T ss_pred CCcCcCCCCCCCCEEEcCCCCCCCCCC
Confidence 566776555 68999999999974
No 12
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.11 E-value=1.4 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.7
Q ss_pred CceeeCCCCccceeEeCcccccccccce
Q 038026 68 SGLVDCRVCKGAGFISETTKLERFHMNV 95 (98)
Q Consensus 68 ~~~~rC~~C~GaG~I~C~tC~g~~~~~~ 95 (98)
....||..|.|- +.|+.|.-+.|++.
T Consensus 10 DA~lrC~gCdgd--LyC~rC~rE~Hdd~ 35 (54)
T d2d8va1 10 DATLRCAGCDGD--LYCARCFREGHDNF 35 (54)
T ss_dssp CCCEEETTTTSE--EECSSHHHHHTTTS
T ss_pred CCceEecCCCCc--eehHHHHHHhcccc
Confidence 446689999766 99999999999764
No 13
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=54.98 E-value=1.5 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=14.0
Q ss_pred ehHHHHHHHHHHHhcc
Q 038026 23 TISVFVAIALSLFLGF 38 (98)
Q Consensus 23 ~~sv~~~i~~~lf~~~ 38 (98)
.++|+++|++|.|.+.
T Consensus 12 IIgILaaia~P~~~~~ 27 (158)
T d2pila_ 12 IVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4799999999998875
No 14
>d2ctda1 g.37.1.1 (A:8-60) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.31 E-value=1.9 Score=25.27 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=8.9
Q ss_pred ceeEeCccccc
Q 038026 79 AGFISETTKLE 89 (98)
Q Consensus 79 aG~I~C~tC~g 89 (98)
.|.++||||+.
T Consensus 25 kG~v~CPtC~~ 35 (53)
T d2ctda1 25 KGSVSCPTCQA 35 (53)
T ss_dssp TSCEECTTTCS
T ss_pred CCcccCCccch
Confidence 68888998875
No 15
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.50 E-value=3.6 Score=22.46 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=13.3
Q ss_pred ceeeCCCCccceeEeCcccccc
Q 038026 69 GLVDCRVCKGAGFISETTKLER 90 (98)
Q Consensus 69 ~~~rC~~C~GaG~I~C~tC~g~ 90 (98)
....|-+|.-.+...|+.|+..
T Consensus 7 ~~~~C~~C~~~~~~~C~~C~~~ 28 (47)
T d2dj8a1 7 SSESCWNCGRKASETCSGCNTA 28 (47)
T ss_dssp CSCCCSSSCSCCCEECTTTSCC
T ss_pred CCCcCCCCCccccccCCCCCCe
Confidence 3455666666666666666543
No 16
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=47.54 E-value=8.4 Score=21.00 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=8.5
Q ss_pred CCCcceeccccCC
Q 038026 49 AGNGGTKCVFCND 61 (98)
Q Consensus 49 ~GtG~~~C~fC~~ 61 (98)
.|+.+.+|..|.+
T Consensus 14 YgR~g~~C~~C~~ 26 (47)
T d1tdza3 14 YGKTGEKCSRCGA 26 (47)
T ss_dssp TTCTTSBCTTTCC
T ss_pred eCCCCCCcCCCCc
Confidence 4556677777764
No 17
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=46.96 E-value=2.8 Score=22.14 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=12.6
Q ss_pred eeEeCcccccccccc
Q 038026 80 GFISETTKLERFHMN 94 (98)
Q Consensus 80 G~I~C~tC~g~~~~~ 94 (98)
|+.+|+.|...||.-
T Consensus 1 GR~~C~~CG~~Yh~~ 15 (35)
T d1s3ga2 1 GRRICKVCGTSYHLL 15 (35)
T ss_dssp SEEEETTTCCEEETT
T ss_pred CccCCcCcCchhccc
Confidence 788999999999863
No 18
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=46.62 E-value=8.8 Score=20.67 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.5
Q ss_pred CCCcceeccccCCC
Q 038026 49 AGNGGTKCVFCNDG 62 (98)
Q Consensus 49 ~GtG~~~C~fC~~G 62 (98)
.|+-+.+|..|.+.
T Consensus 12 YgR~g~~C~~C~~~ 25 (44)
T d1k82a3 12 YGRKGEPCRVCGTP 25 (44)
T ss_dssp TTCTTSBCTTTCCB
T ss_pred eCCCCCCcCCCCCE
Confidence 35555667777653
No 19
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=45.54 E-value=11 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=8.1
Q ss_pred CCCcceeccccCCC
Q 038026 49 AGNGGTKCVFCNDG 62 (98)
Q Consensus 49 ~GtG~~~C~fC~~G 62 (98)
.|..+.+|..|.+.
T Consensus 21 Y~r~g~~C~~C~~~ 34 (56)
T d1ee8a3 21 YGREGLPCPACGRP 34 (56)
T ss_dssp TTCTTSBCTTTCCB
T ss_pred ecCCCcccccCCce
Confidence 44555667777543
No 20
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.86 E-value=4.5 Score=21.66 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=12.4
Q ss_pred eeEeCcccccccccc
Q 038026 80 GFISETTKLERFHMN 94 (98)
Q Consensus 80 G~I~C~tC~g~~~~~ 94 (98)
|+.+|+.|...||..
T Consensus 1 GRr~C~~cG~~Yh~~ 15 (38)
T d1akya2 1 GRLIHPASGRSYHKI 15 (38)
T ss_dssp TEEECTTTCCEEETT
T ss_pred CccCCcCccchhhhh
Confidence 678999999999853
No 21
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.31 E-value=6.3 Score=21.54 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=10.3
Q ss_pred eCCCCccceeEeCccccc
Q 038026 72 DCRVCKGAGFISETTKLE 89 (98)
Q Consensus 72 rC~~C~GaG~I~C~tC~g 89 (98)
+|.+|...+...|+.|+.
T Consensus 10 ~C~~Cg~~~~~~Cs~C~~ 27 (47)
T d2dana1 10 RCAYCSAEASKRCSRCQN 27 (47)
T ss_dssp CCSSSCCCCCEECTTTSC
T ss_pred cCcCCCChhhccCCCCCC
Confidence 455555555566666553
No 22
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=39.79 E-value=13 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=7.7
Q ss_pred CCCcceeccccCC
Q 038026 49 AGNGGTKCVFCND 61 (98)
Q Consensus 49 ~GtG~~~C~fC~~ 61 (98)
.|+-+.+|..|.+
T Consensus 14 YgR~g~~C~~C~~ 26 (46)
T d1r2za3 14 YGRQGNPCKRCGT 26 (46)
T ss_dssp TTCTTSBCTTTCC
T ss_pred eCCCCCccCCCCC
Confidence 3455566777764
No 23
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=38.94 E-value=4.1 Score=21.46 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=12.4
Q ss_pred eeEeCcccccccccc
Q 038026 80 GFISETTKLERFHMN 94 (98)
Q Consensus 80 G~I~C~tC~g~~~~~ 94 (98)
|+.+|+.|..-||..
T Consensus 1 GRr~C~~CG~~Yh~~ 15 (35)
T d1zina2 1 GRRICRNCGATYHLI 15 (35)
T ss_dssp TEEEETTTCCEEETT
T ss_pred CccCCcCcCchhccc
Confidence 678899999999863
No 24
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}
Probab=36.14 E-value=3.3 Score=29.32 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=20.1
Q ss_pred ceeccccCCCceEee--CceeeCCCCcccee
Q 038026 53 GTKCVFCNDGKMKIE--SGLVDCRVCKGAGF 81 (98)
Q Consensus 53 ~~~C~fC~~G~vk~e--~~~~rC~~C~GaG~ 81 (98)
|++|..|+.-..+.+ .++.-||+|.=.=+
T Consensus 2 W~~C~~C~~~~~~~~l~~~~~vC~~C~~h~~ 32 (263)
T d2f9yb1 2 WTKCDSCGQVLYRAELERNLEVCPKCDHHMR 32 (263)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCBCC
T ss_pred cCcCCCCcceeeHHHHHHhCCCCcCCCCCCC
Confidence 899999975444443 46778999975443
No 25
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.73 E-value=10 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=9.5
Q ss_pred CCCCccceeEeCccccc
Q 038026 73 CRVCKGAGFISETTKLE 89 (98)
Q Consensus 73 C~~C~GaG~I~C~tC~g 89 (98)
|.+|...++..|+.|+.
T Consensus 2 C~~C~~~~~~~C~~C~~ 18 (38)
T d2jw6a1 2 CVNCGREAMSECTGCHK 18 (38)
T ss_dssp CSSSSSSCSEECTTTCS
T ss_pred ccccCccccccCCCCCC
Confidence 44555555566666654
No 26
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.25 E-value=16 Score=21.14 Aligned_cols=26 Identities=15% Similarity=0.416 Sum_probs=17.7
Q ss_pred eeCCCCccc------eeEeCccccccccccee
Q 038026 71 VDCRVCKGA------GFISETTKLERFHMNVV 96 (98)
Q Consensus 71 ~rC~~C~Ga------G~I~C~tC~g~~~~~~~ 96 (98)
..|..|+.. -.|.|-.|...||..=+
T Consensus 17 ~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~ 48 (88)
T d1weva_ 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCH 48 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTS
T ss_pred CCccCCCCccCCCCCeEEEcCCCCCccccccC
Confidence 357777653 25779999988887543
No 27
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=25.18 E-value=9.8 Score=19.02 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=9.7
Q ss_pred eCcccccccccc
Q 038026 83 SETTKLERFHMN 94 (98)
Q Consensus 83 ~C~tC~g~~~~~ 94 (98)
.|+||+.+|+.-
T Consensus 10 fcktckaefgky 21 (26)
T d2bi6h1 10 FCKTCKAEFGKY 21 (26)
T ss_dssp TCSSBCCBTTBC
T ss_pred HHHHHHHHhCce
Confidence 689999998754
No 28
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=23.92 E-value=10 Score=20.10 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=4.4
Q ss_pred eCCCCccce
Q 038026 72 DCRVCKGAG 80 (98)
Q Consensus 72 rC~~C~GaG 80 (98)
.|..|...|
T Consensus 24 ~C~~Cg~~G 32 (42)
T d2exfa1 24 GCWKCGKEG 32 (42)
T ss_dssp SCSSSCCSS
T ss_pred ccccCCCCC
Confidence 455555444
No 29
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=23.35 E-value=10 Score=19.76 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=11.9
Q ss_pred eeEeCcccccccccc
Q 038026 80 GFISETTKLERFHMN 94 (98)
Q Consensus 80 G~I~C~tC~g~~~~~ 94 (98)
|+-+|+.|...||..
T Consensus 1 GRr~c~~cG~~Yh~~ 15 (35)
T d1e4va2 1 GRRVHAPSGRVYHVK 15 (35)
T ss_dssp TEEEETTTTEEEETT
T ss_pred CccCCcCcCChhhhc
Confidence 677888998888863
No 30
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=22.62 E-value=26 Score=21.05 Aligned_cols=23 Identities=22% Similarity=0.817 Sum_probs=14.3
Q ss_pred eccccCCCceEee-CceeeCCCCc
Q 038026 55 KCVFCNDGKMKIE-SGLVDCRVCK 77 (98)
Q Consensus 55 ~C~fC~~G~vk~e-~~~~rC~~C~ 77 (98)
.|+||...+++.+ .+--+|..|.
T Consensus 29 ~Cp~Cgk~~vkR~a~GIW~C~kC~ 52 (73)
T d1vqoz1 29 ACPNCGEDRVDRQGTGIWQCSYCD 52 (73)
T ss_dssp CCSSSSCSCEEEEETTEEEETTTC
T ss_pred cCCCCCCceeEEEEEEEEECCCCC
Confidence 5778876666664 3555666553
No 31
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=22.55 E-value=12 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhcccCCCcCCCCC
Q 038026 24 ISVFVAIALSLFLGFKGDPVPCDRC 48 (98)
Q Consensus 24 ~sv~~~i~~~lf~~~r~d~~pC~~C 48 (98)
..-++.++.++++|.-..-+||+=|
T Consensus 7 ~~s~~~l~~A~~~q~~~gl~PC~LC 31 (149)
T d2hi7b1 7 FTALALELTALWFQHVMLLKPCVLC 31 (149)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 3345557777888877777788766
No 32
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.52 E-value=20 Score=22.44 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=29.5
Q ss_pred cccCCCcCCCCCCCCcceeccccC-CC----ceEe-eCceeeCCCCc
Q 038026 37 GFKGDPVPCDRCAGNGGTKCVFCN-DG----KMKI-ESGLVDCRVCK 77 (98)
Q Consensus 37 ~~r~d~~pC~~C~GtG~~~C~fC~-~G----~vk~-e~~~~rC~~C~ 77 (98)
|+++||..=++-...-.+=|. |. +. ++.. +....||+.|.
T Consensus 41 GTke~P~lVpS~~~~RiVGC~-~~~D~h~v~W~~l~~g~p~RC~eCG 86 (98)
T d1v54f_ 41 GTKEDPNLVPSITNKRIVGCI-CEEDNSTVIWFWLHKGEAQRCPSCG 86 (98)
T ss_dssp CCSSSCEEEECSSSEEEEEEC-CSTTCSCCEEEEEESSSCEECTTTC
T ss_pred CCCcCCcEecCCCCceEEeec-CCCCCceeEEEEEeCCCCcccCCCC
Confidence 678899888888888888888 76 44 2333 46688999884
No 33
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.49 E-value=35 Score=24.48 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=4.5
Q ss_pred CCCCCCC
Q 038026 44 PCDRCAG 50 (98)
Q Consensus 44 pC~~C~G 50 (98)
.|+-|.+
T Consensus 166 ~CPvCGs 172 (290)
T d2fiya1 166 LCPACGS 172 (290)
T ss_dssp SCTTTCC
T ss_pred cCCCCCC
Confidence 3777764
No 34
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.69 E-value=20 Score=22.23 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=18.0
Q ss_pred cceeccccCCCceEeeCceeeCCCCccceeEeCccccc
Q 038026 52 GGTKCVFCNDGKMKIESGLVDCRVCKGAGFISETTKLE 89 (98)
Q Consensus 52 G~~~C~fC~~G~vk~e~~~~rC~~C~GaG~I~C~tC~g 89 (98)
+...|..|...-...-...+.|.+| |.+.|..|..
T Consensus 47 ~~~~C~~C~~~f~~~~~~~~~C~~C---~~~~C~~C~~ 81 (124)
T d1zbdb_ 47 GVNRCILCGEQLGMLGSASVVCEDC---KKNVCTKCGV 81 (124)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTT---CCEEETTSEE
T ss_pred CCCcCcccCCcccCCCCCCCcCccC---CcccccCCCC
Confidence 3444666663211111234457777 5677887754
No 35
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}
Probab=21.45 E-value=14 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.1
Q ss_pred cCCCCCCCCcce
Q 038026 43 VPCDRCAGNGGT 54 (98)
Q Consensus 43 ~pC~~C~GtG~~ 54 (98)
..|..|||.+..
T Consensus 12 ~~Ca~CHg~~~~ 23 (81)
T d1kx7a_ 12 KACTVCHSMGVA 23 (81)
T ss_dssp HTTTSSTTTTCT
T ss_pred HHHHHHccCCCC
Confidence 469999998743
No 36
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.26 E-value=24 Score=18.67 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=18.6
Q ss_pred ceeccccC--CCceEeeC--ceeeCCCCccce
Q 038026 53 GTKCVFCN--DGKMKIES--GLVDCRVCKGAG 80 (98)
Q Consensus 53 ~~~C~fC~--~G~vk~e~--~~~rC~~C~GaG 80 (98)
++.|..|+ +.....|. -.-+|..|.+.-
T Consensus 1 YV~C~~C~spDT~l~ke~R~~~l~C~aCGa~r 32 (37)
T d1neea2 1 FVICHECNRPDTRIIREGRISLLKCEACGAKA 32 (37)
T ss_dssp HHHHTCCSSCSSCCEEETTTTEEECSTTSCCC
T ss_pred CeECCCCCCCCCEEEEcCCEEEEEeccCCCCc
Confidence 35688888 45555564 466888887653
No 37
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.70 E-value=14 Score=22.06 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=10.3
Q ss_pred eeEeCcccccccccc
Q 038026 80 GFISETTKLERFHMN 94 (98)
Q Consensus 80 G~I~C~tC~g~~~~~ 94 (98)
|.+.||.|+..|+..
T Consensus 81 ~~~~CP~CR~~~~~~ 95 (114)
T d1v87a_ 81 GSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCBCTTTCCBSSSC
T ss_pred CCCccccccchhccC
Confidence 566788887777654
No 38
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.24 E-value=31 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=20.6
Q ss_pred ceeccccCCC--ceEe--eCceeeCCCCcccee
Q 038026 53 GTKCVFCNDG--KMKI--ESGLVDCRVCKGAGF 81 (98)
Q Consensus 53 ~~~C~fC~~G--~vk~--e~~~~rC~~C~GaG~ 81 (98)
+-.|+|+.+. ..++ +.+..+|-.|...|.
T Consensus 36 ~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd 68 (102)
T d1d0qa_ 36 FGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 68 (102)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred EEeccccCCCCcceeEcCCchheeeehhccccc
Confidence 3479999843 3444 467899999987663
Done!