BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038027
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 41 VIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISS-PSMAKAILKEHDSLFCDR 99
+IG++L LG PH +L+++++ +G ++ +R+G VV+S ++ +A++++ D
Sbjct: 21 LIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRP 80
Query: 100 KVPESILSQPYQHHEFSLVWLPVS-PLWRSLRKICN 134
+ L Q FS P S P+W + R++
Sbjct: 81 DLYTFTLISNGQSMSFS----PDSGPVWAARRRLAQ 112
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 50 GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
G H + KL K +GPI S+R+G TTV++ +AK +L + F R
Sbjct: 29 GHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGR 78
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between
Alpha- Naphthoflavone And Human Cytochrome P450 1b1
(Cyp1b1)
Length = 507
Score = 39.7 bits (91), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 41 VIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
+IGN +G H S A+LA+ +G + +RLG VV++ L + S F DR
Sbjct: 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADR 77
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 52 PHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
PH + K ++++G I SL LG ++TVV++ + K L +F DR
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 52 PHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
PH + K ++++G I SL LG ++TVV++ + K L +F DR
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 41 VIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISS-PSMAKAILKEHDSLFCDR 99
++G++L LG PH +L+++++ +G ++ +R+G +V+S ++ +A++++ D
Sbjct: 26 LLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRP 85
Query: 100 KVPESILSQPYQHHEFSLVWLPVSPLWRSLRKICN 134
+ S L Q FS P+W + R++
Sbjct: 86 DLYTSTLITDGQSLTFS---TDSGPVWAARRRLAQ 117
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 41 VIGNLLELGGKP-HKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
VIGN+L++G K KSL L+K++GP+ +L G VV+ K L + F R
Sbjct: 19 VIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGR 78
Query: 100 KV 101
+
Sbjct: 79 GI 80
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 41 VIGNLLELGGKP-HKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
VIGN+L++G K KSL L+K++GP+ +L G VV+ K L + F R
Sbjct: 21 VIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGR 80
Query: 100 KV 101
+
Sbjct: 81 GI 82
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 41 VIGNLLELGGKP-HKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
+IGN+L++ K KSL K ++ +GP+ ++ LG TVV+ K L + F R
Sbjct: 20 IIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGR 79
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 41 VIGNLLEL---GG--KPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILK 90
++G+LLE+ GG K H +LA+ K +G I ++LG +V + SPS+ +A+ +
Sbjct: 34 LLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYR 88
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 41 VIGNLLELGGKP-HKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDR 99
VIGN+L++ K KSL L+KI+GP+ +L G VV+ + K L + F R
Sbjct: 21 VIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGR 80
>pdb|1WZC|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
pdb|1WZC|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
Length = 249
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 121 PVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEENCSA 167
P P+ L+ + IF + K A Q+ RK+++ ++ EN SA
Sbjct: 21 PAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVETPFISENGSA 67
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 54 KSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAI 88
K LAK +++ +++ LGQV VIS PS+A +
Sbjct: 134 KGLAKGSRLLHEVVATELGQVPMAVISGPSLATEV 168
>pdb|3B98|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B98|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B99|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
pdb|3B99|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
Length = 475
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 42 IGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSL 95
+G+ LE G K L ++ + HG I ++R + V+ + A+L + SL
Sbjct: 30 LGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVASL 83
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In
Complex With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With
Bicalutamide Bound
Length = 456
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 60 AKIHGPIMSLRLGQVTTVVISSPSMAKAIL 89
AK +GP++ + + T+V+++SP K L
Sbjct: 20 AKKYGPVVRVNVFHKTSVIVTSPESVKKFL 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,319,506
Number of Sequences: 62578
Number of extensions: 140396
Number of successful extensions: 344
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 16
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)