Query 038027
Match_columns 167
No_of_seqs 128 out of 1594
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 9.6E-27 2.1E-31 172.5 16.8 135 27-163 22-158 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.9 1.4E-25 3E-30 169.2 16.8 130 31-163 34-164 (517)
3 PLN00110 flavonoid 3',5'-hydro 99.9 1.6E-23 3.4E-28 157.6 18.0 145 17-163 17-161 (504)
4 PLN00168 Cytochrome P450; Prov 99.9 1.7E-23 3.8E-28 158.0 17.8 132 29-164 33-169 (519)
5 PLN03112 cytochrome P450 famil 99.9 2.5E-23 5.4E-28 157.0 17.6 132 30-163 31-162 (514)
6 PLN03234 cytochrome P450 83B1; 99.9 3.8E-23 8.2E-28 155.6 17.3 136 27-164 24-160 (499)
7 PLN02394 trans-cinnamate 4-mon 99.9 4.4E-23 9.5E-28 155.4 17.6 135 28-164 27-162 (503)
8 PTZ00404 cytochrome P450; Prov 99.9 1.9E-23 4.1E-28 156.6 15.1 132 27-163 25-156 (482)
9 KOG0158 Cytochrome P450 CYP3/C 99.9 3.1E-23 6.7E-28 152.8 15.8 143 18-165 18-164 (499)
10 PLN02183 ferulate 5-hydroxylas 99.9 3.8E-23 8.2E-28 156.1 16.5 138 23-163 28-165 (516)
11 PLN02971 tryptophan N-hydroxyl 99.9 7.2E-23 1.6E-27 155.3 17.4 133 29-163 55-190 (543)
12 PLN02966 cytochrome P450 83A1 99.9 1.2E-22 2.7E-27 152.8 15.5 136 26-164 24-161 (502)
13 PLN02290 cytokinin trans-hydro 99.9 9.6E-23 2.1E-27 153.9 13.0 131 29-164 40-189 (516)
14 PLN02196 abscisic acid 8'-hydr 99.9 1.7E-22 3.8E-27 150.7 12.5 128 29-162 33-161 (463)
15 PLN02774 brassinosteroid-6-oxi 99.9 1.8E-22 3.9E-27 150.6 10.1 132 26-163 26-158 (463)
16 PLN02500 cytochrome P450 90B1 99.9 2.5E-22 5.5E-27 150.8 10.0 129 29-163 36-170 (490)
17 PLN02655 ent-kaurene oxidase 99.9 2.4E-21 5.2E-26 144.7 12.7 129 33-163 1-130 (466)
18 PLN02302 ent-kaurenoic acid ox 99.9 2.3E-20 5.1E-25 140.2 13.9 128 29-163 40-175 (490)
19 PLN03018 homomethionine N-hydr 99.8 5.9E-19 1.3E-23 133.6 16.6 130 31-163 40-173 (534)
20 PLN02169 fatty acid (omega-1)- 99.8 2.2E-19 4.7E-24 135.2 13.7 157 1-163 1-165 (500)
21 PLN03141 3-epi-6-deoxocathaste 99.8 1.6E-19 3.5E-24 134.5 9.7 130 27-162 3-138 (452)
22 PLN02987 Cytochrome P450, fami 99.8 4E-19 8.7E-24 132.8 11.4 125 31-161 30-160 (472)
23 KOG0157 Cytochrome P450 CYP4/C 99.8 5.2E-19 1.1E-23 132.9 11.2 130 29-163 33-165 (497)
24 PF00067 p450: Cytochrome P450 99.8 3.5E-20 7.7E-25 137.2 4.9 130 33-166 1-134 (463)
25 PLN03195 fatty acid omega-hydr 99.8 9.4E-19 2E-23 132.4 11.4 127 31-163 30-160 (516)
26 PLN02936 epsilon-ring hydroxyl 99.7 1.3E-17 2.8E-22 125.4 10.9 128 31-164 12-145 (489)
27 PLN02738 carotene beta-ring hy 99.7 1.7E-17 3.6E-22 127.7 11.4 110 49-164 150-259 (633)
28 PLN02648 allene oxide synthase 99.7 1.2E-17 2.7E-22 124.7 7.1 126 30-163 16-161 (480)
29 KOG0159 Cytochrome P450 CYP11/ 99.6 2.9E-15 6.3E-20 109.8 9.7 135 30-166 49-190 (519)
30 KOG0684 Cytochrome P450 [Secon 99.6 1.8E-14 3.8E-19 103.9 11.3 126 31-160 31-157 (486)
31 PLN02426 cytochrome P450, fami 99.5 1.6E-12 3.4E-17 98.3 13.0 119 39-164 49-170 (502)
32 COG2124 CypX Cytochrome P450 [ 98.9 1.2E-08 2.7E-13 75.5 8.8 107 52-161 24-133 (411)
33 PRK09702 PTS system arbutin-sp 58.7 26 0.00057 22.8 4.2 34 57-90 74-113 (161)
34 PF05084 GRA6: Granule antigen 58.4 26 0.00056 22.8 4.0 16 22-37 168-183 (215)
35 PHA01327 hypothetical protein 57.8 4.7 0.0001 19.5 0.5 20 114-133 10-29 (49)
36 PRK14740 kdbF potassium-transp 55.7 19 0.0004 15.9 3.7 23 1-23 1-23 (29)
37 PF01102 Glycophorin_A: Glycop 55.5 20 0.00042 22.2 3.0 10 19-28 83-92 (122)
38 PF00325 Crp: Bacterial regula 51.8 24 0.00053 16.1 2.5 27 138-164 3-29 (32)
39 PF13625 Helicase_C_3: Helicas 49.0 52 0.0011 20.3 4.3 40 50-91 74-113 (129)
40 cd08777 Death_RIP1 Death Domai 46.9 55 0.0012 18.8 4.8 40 123-165 13-57 (86)
41 PF15330 SIT: SHP2-interacting 45.7 67 0.0015 19.4 4.9 11 38-48 45-55 (107)
42 PF09926 DUF2158: Uncharacteri 45.0 24 0.00053 18.2 2.0 18 63-80 3-20 (53)
43 PRK13664 hypothetical protein; 42.8 52 0.0011 17.3 3.9 33 5-37 8-44 (62)
44 cd08780 Death_TRADD Death Doma 42.5 69 0.0015 18.6 4.4 42 123-165 13-62 (90)
45 PF14198 TnpV: Transposon-enco 38.0 83 0.0018 19.1 3.8 37 127-163 35-71 (111)
46 PHA02681 ORF089 virion membran 37.6 81 0.0017 18.0 3.8 9 20-28 19-27 (92)
47 PF08780 NTase_sub_bind: Nucle 37.5 75 0.0016 19.6 3.7 30 121-151 76-108 (124)
48 PF12669 P12: Virus attachment 35.2 53 0.0011 17.3 2.4 6 21-26 18-23 (58)
49 KOG4241 Mitochondrial ribosoma 35.1 41 0.00089 22.9 2.3 29 63-91 136-164 (245)
50 PF12606 RELT: Tumour necrosis 34.6 69 0.0015 16.4 3.4 17 11-27 11-27 (50)
51 PRK14759 potassium-transportin 33.4 53 0.0011 14.6 3.7 12 11-22 11-22 (29)
52 KOG0114 Predicted RNA-binding 32.4 1.2E+02 0.0026 18.4 6.1 59 31-91 12-76 (124)
53 COG1707 ACT domain-containing 31.9 57 0.0012 21.5 2.5 40 49-88 153-197 (218)
54 PF14851 FAM176: FAM176 family 31.1 1.3E+02 0.0028 19.6 4.0 8 30-37 53-60 (153)
55 PRK02302 hypothetical protein; 31.0 1.1E+02 0.0025 17.8 4.2 42 58-99 21-63 (89)
56 PF14316 DUF4381: Domain of un 30.7 87 0.0019 19.8 3.3 7 123-129 95-101 (146)
57 TIGR02976 phageshock_pspB phag 29.5 1.1E+02 0.0024 17.1 3.8 11 83-93 59-69 (75)
58 cd08318 Death_NMPP84 Death dom 29.4 1.2E+02 0.0025 17.3 4.1 39 123-164 18-59 (86)
59 COG3660 Predicted nucleoside-d 29.4 1.2E+02 0.0027 21.9 4.0 41 35-75 128-172 (329)
60 PF13893 RRM_5: RNA recognitio 28.8 86 0.0019 15.6 5.3 35 57-91 2-40 (56)
61 PF02484 Rhabdo_NV: Rhabdoviru 28.6 1.3E+02 0.0027 17.5 3.6 55 80-145 8-63 (111)
62 PF15183 MRAP: Melanocortin-2 28.1 1.3E+02 0.0027 17.3 4.7 20 6-25 43-62 (90)
63 PF11616 EZH2_WD-Binding: WD r 28.1 33 0.00072 15.3 0.7 8 123-130 19-26 (30)
64 PRK02886 hypothetical protein; 27.0 1.4E+02 0.003 17.4 4.3 33 59-91 20-52 (87)
65 PRK10597 DNA damage-inducible 25.4 1.4E+02 0.0031 17.0 4.2 38 54-91 24-69 (81)
66 PF06667 PspB: Phage shock pro 25.3 1.4E+02 0.003 16.8 3.8 11 83-93 59-69 (75)
67 PF15050 SCIMP: SCIMP protein 25.1 1.8E+02 0.0039 18.0 4.1 10 14-23 24-33 (133)
68 TIGR01661 ELAV_HUD_SF ELAV/HuD 25.0 2.8E+02 0.006 20.3 5.7 49 41-91 273-330 (352)
69 PRK09458 pspB phage shock prot 24.8 1.4E+02 0.003 16.8 4.2 13 83-95 59-71 (75)
70 TIGR03422 mito_frataxin fratax 23.3 93 0.002 18.4 2.2 28 64-91 35-62 (97)
71 KOG1548 Transcription elongati 22.9 3.4E+02 0.0073 20.5 6.8 49 53-101 290-344 (382)
72 COG4471 Uncharacterized protei 22.6 1.7E+02 0.0037 17.0 4.9 43 57-99 19-62 (90)
73 PLN03134 glycine-rich RNA-bind 22.3 2.2E+02 0.0047 18.0 5.4 41 51-91 46-95 (144)
74 COG1965 CyaY Protein implicate 22.3 1.1E+02 0.0024 18.5 2.4 28 64-91 36-63 (106)
75 PF06679 DUF1180: Protein of u 22.0 1.9E+02 0.0041 19.0 3.6 11 15-25 108-118 (163)
76 PF13438 DUF4113: Domain of un 21.9 49 0.0011 16.9 0.8 18 123-141 28-45 (52)
77 PRK14762 membrane protein; Pro 21.9 87 0.0019 13.3 2.9 9 1-9 1-9 (27)
78 PF06716 DUF1201: Protein of u 21.6 1.3E+02 0.0027 15.0 3.3 8 16-23 24-31 (54)
79 PF09902 DUF2129: Uncharacteri 21.3 1.6E+02 0.0036 16.3 4.2 33 59-91 16-48 (71)
80 TIGR01642 U2AF_lg U2 snRNP aux 21.2 4E+02 0.0086 20.8 5.9 38 54-91 434-483 (509)
81 PHA03049 IMV membrane protein; 21.1 1.6E+02 0.0035 16.0 5.9 14 31-44 31-44 (68)
82 COG2069 CdhD CO dehydrogenase/ 21.0 2.1E+02 0.0045 21.1 3.9 42 49-90 149-196 (403)
83 PF03597 CcoS: Cytochrome oxid 20.2 1.4E+02 0.0029 14.9 4.4 30 7-36 7-36 (45)
84 KOG0484 Transcription factor P 20.2 1.4E+02 0.003 18.0 2.5 25 126-152 14-38 (125)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=9.6e-27 Score=172.54 Aligned_cols=135 Identities=35% Similarity=0.626 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCccccccccCCCC-chHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCC-ccc
Q 038027 27 GKRKGLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKV-PES 104 (167)
Q Consensus 27 ~~~~~~~pgp~~~p~~g~~~~~~~~-~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~-~~~ 104 (167)
+++.+.||||+++|++||++++... ++..+.+++++|||++.+++|..++|+++|+++++|++.+++..|.+|+. ...
T Consensus 22 ~~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~ 101 (489)
T KOG0156|consen 22 RKRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTAT 101 (489)
T ss_pred cCCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence 3347899999999999999999665 99999999999999999999999999999999999999999999999997 223
Q ss_pred cccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 105 ILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
. +.+...+.+++++.+|+.||.+||...+..|+...++++...-.++++.+++++.+
T Consensus 102 ~--~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~ 158 (489)
T KOG0156|consen 102 L--KYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK 158 (489)
T ss_pred H--HHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh
Confidence 2 33444578999998999999999988789999999999988889999999999875
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.94 E-value=1.4e-25 Score=169.24 Aligned_cols=130 Identities=41% Similarity=0.733 Sum_probs=112.8
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCcc
Q 038027 31 GLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQPY 110 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 110 (167)
+.||||.++|++|+++.+..+++..+.+|+++||+++++++++.++++++||+++++++.++...|.+++..... +.+
T Consensus 34 ~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~--~~~ 111 (517)
T PLN02687 34 PLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGA--EHM 111 (517)
T ss_pred CCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccch--hhh
Confidence 568899999999999888667889999999999999999999999999999999999999888888887654433 333
Q ss_pred ccCCcceeeCCCChHHHHHHhHhhh-ccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 111 QHHEFSLVWLPVSPLWRSLRKICNM-HIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 111 ~~~~~~~~~~~~g~~w~~~R~~~~~-~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
+..+.+++++.+|+.|+++|+++ + ++|+.++++.+.+.+++++.++++.|++
T Consensus 112 ~~~~~~~l~~~~g~~Wk~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~ 164 (517)
T PLN02687 112 AYNYQDLVFAPYGPRWRALRKIC-AVHLFSAKALDDFRHVREEEVALLVRELAR 164 (517)
T ss_pred ccCCceeEeCCCCHHHHHHHHHH-HHHhCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33345677777799999999999 6 8999999999999999999999999975
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.92 E-value=1.6e-23 Score=157.63 Aligned_cols=145 Identities=32% Similarity=0.538 Sum_probs=115.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhccccc
Q 038027 17 WVMALSFISSGKRKGLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLF 96 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~ 96 (167)
..++..-+...+..+.||||+++|++|+++.+..+++..+.+++++||+++++++++.++++++||+++++++.++...|
T Consensus 17 ~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f 96 (504)
T PLN00110 17 TRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINF 96 (504)
T ss_pred HHHHHHHHhhcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhh
Confidence 33333444445566889999999999998877666789999999999999999999999999999999999999888788
Q ss_pred CCCCCccccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 97 CDRKVPESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
.+++..... ......+.+.+++.+|+.|+++|+.++.+.|+.++++.+.+.+.+++.++++.+.+
T Consensus 97 ~~r~~~~~~--~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~ 161 (504)
T PLN00110 97 SNRPPNAGA--THLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLE 161 (504)
T ss_pred cCCCCccch--hhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 887754432 11111234456666799999999999324799999999999999999999988865
No 4
>PLN00168 Cytochrome P450; Provisional
Probab=99.92 E-value=1.7e-23 Score=158.00 Aligned_cols=132 Identities=24% Similarity=0.400 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCccccccccCC---CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 29 RKGLPPGPRPYPVIGNLLELG---GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~~---~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
..+.||||+++|++|+++.+. .+++..+.+|+++||+++++++++.++++++||+++++++.+++..|.+++.....
T Consensus 33 ~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~ 112 (519)
T PLN00168 33 GRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASS 112 (519)
T ss_pred CCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccch
Confidence 347789999999999987652 34678899999999999999999999999999999999999888888887664433
Q ss_pred ccCccccCCcceee-CCCChHHHHHHh-HhhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 106 LSQPYQHHEFSLVW-LPVSPLWRSLRK-ICNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 106 ~~~~~~~~~~~~~~-~~~g~~w~~~R~-~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
..++. +.+++. ..+|+.|+++|| ++ +|+|+.++++.+.+.+.++++++++.|.+.
T Consensus 113 --~~~~~-~~~~~~~~~~G~~Wk~~Rr~~~-~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~ 169 (519)
T PLN00168 113 --RLLGE-SDNTITRSSYGPVWRLLRRNLV-AETLHPSRVRLFAPARAWVRRVLVDKLRRE 169 (519)
T ss_pred --hhhcc-CCCceeCCCCCHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33432 223333 357999999987 67 899999999999999999999999999764
No 5
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.92 E-value=2.5e-23 Score=157.05 Aligned_cols=132 Identities=34% Similarity=0.677 Sum_probs=109.3
Q ss_pred CCCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCc
Q 038027 30 KGLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQP 109 (167)
Q Consensus 30 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~ 109 (167)
.+.+|||.++|++|++..+..+++..+.+++++||+++++++++.++++++||+++++++.++...|.+++.........
T Consensus 31 ~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~ 110 (514)
T PLN03112 31 LRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLA 110 (514)
T ss_pred CCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeec
Confidence 37889999999999998876678899999999999999999999999999999999999988888888876543321011
Q ss_pred cccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 110 YQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
.+ ...++++.+|+.|+++|+++.++.|+.++++.+.+.+.++++++++.+.+
T Consensus 111 ~g--~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~ 162 (514)
T PLN03112 111 YG--CGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWE 162 (514)
T ss_pred cC--CCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22 23345566799999999996357999999999999999999999988654
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.91 E-value=3.8e-23 Score=155.58 Aligned_cols=136 Identities=28% Similarity=0.523 Sum_probs=111.6
Q ss_pred CCCCCCCCCCCCCccccccccCC-CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 27 GKRKGLPPGPRPYPVIGNLLELG-GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 27 ~~~~~~~pgp~~~p~~g~~~~~~-~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
+++.+.+|||.++|++|+++.+. .++..++.+++++||+++++++++.++++++|||++++|+.+++..|.+++.....
T Consensus 24 ~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~ 103 (499)
T PLN03234 24 KKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQ 103 (499)
T ss_pred CCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence 34457899999999999998884 46888999999999999999999999999999999999999887788887754332
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
......+..+.+...++.|+++|+.+.++.|+.++++.+.+.+.+++++++++|.+.
T Consensus 104 --~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~ 160 (499)
T PLN03234 104 --QTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKA 160 (499)
T ss_pred --hhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 222222344445566899999999752699999999999999999999999999653
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.91 E-value=4.4e-23 Score=155.35 Aligned_cols=135 Identities=30% Similarity=0.519 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCccccccccCCCC-chHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccc
Q 038027 28 KRKGLPPGPRPYPVIGNLLELGGK-PHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESIL 106 (167)
Q Consensus 28 ~~~~~~pgp~~~p~~g~~~~~~~~-~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~ 106 (167)
++.+.||||+..|++|+++.+..+ .+..+.+|+++||+++++++++.++++++||+++++++.+++..|.+++.....
T Consensus 27 ~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~- 105 (503)
T PLN02394 27 KKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVF- 105 (503)
T ss_pred CcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchH-
Confidence 446889999999999999887433 578899999999999999999999999999999999998877777766543332
Q ss_pred cCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 107 SQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
..+...+.+++++.+|+.|+++|+.+..|.|+.++++.+.+.++++++++++.+.+.
T Consensus 106 -~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~ 162 (503)
T PLN02394 106 -DIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRAN 162 (503)
T ss_pred -hHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333223445666777999999999983399999999999999999999999998753
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=99.91 E-value=1.9e-23 Score=156.62 Aligned_cols=132 Identities=27% Similarity=0.433 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccc
Q 038027 27 GKRKGLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESIL 106 (167)
Q Consensus 27 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~ 106 (167)
+.+.+.+|||.++|++|+++.+..+++..+.+++++||+++++++++.++++++||+++++|+.++...|.+++.....
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~- 103 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSI- 103 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCccee-
Confidence 3446888999999999999888667899999999999999999999999999999999999998877777766544332
Q ss_pred cCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 107 SQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
.. ...+.+++.. +|+.|+++|+.+ +|.|+.++++++.+.+.+++.++++.|.+
T Consensus 104 -~~-~~~~~~l~~~-~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~ 156 (482)
T PTZ00404 104 -KH-GTFYHGIVTS-SGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKK 156 (482)
T ss_pred -ee-eccCCceecc-ChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHH
Confidence 11 1124565554 699999999999 79999999999999999999999999865
No 9
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=3.1e-23 Score=152.84 Aligned_cols=143 Identities=22% Similarity=0.323 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccC--CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccc
Q 038027 18 VMALSFISSGKRKGLPPGPRPYPVIGNLLEL--GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSL 95 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~pgp~~~p~~g~~~~~--~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~ 95 (167)
++.+..-+.++..+.+|+|+++|++||+..+ ...+.....+...++|+++.++.+..+.++++|||++++|+.++..+
T Consensus 18 y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~ 97 (499)
T KOG0158|consen 18 YLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDN 97 (499)
T ss_pred HHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCcc
Confidence 3333333345666799999999999999987 23334444444444499999999999999999999999999999999
Q ss_pred cCCCC--CccccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHhc
Q 038027 96 FCDRK--VPESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEENC 165 (167)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~~ 165 (167)
|..+. ..... . +......+++.+|++||+.|..+ +|.||..+++++.++|++.+++++++++++.
T Consensus 98 F~~r~~~~~~d~--~--~~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~ 164 (499)
T KOG0158|consen 98 FYNRKRPIYGDP--E--DPLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKS 164 (499)
T ss_pred CcCCCCCCcCCC--C--CcccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99854 22222 1 12334455566699999999999 8999999999999999999999999999864
No 10
>PLN02183 ferulate 5-hydroxylase
Probab=99.91 E-value=3.8e-23 Score=156.07 Aligned_cols=138 Identities=29% Similarity=0.607 Sum_probs=110.0
Q ss_pred HHhcCCCCCCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCc
Q 038027 23 FISSGKRKGLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVP 102 (167)
Q Consensus 23 ~~~~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~ 102 (167)
+.+.+++.+.||||+++|++|+++.+....+..+.+|+++||+++++++++.++++++||+++++++.+++..|.+++..
T Consensus 28 ~~~~~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~ 107 (516)
T PLN02183 28 ISRLRRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPAN 107 (516)
T ss_pred HhhccCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcc
Confidence 33445556889999999999999877555677899999999999999999999999999999999999888888877654
Q ss_pred cccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 103 ESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
... ......+.+.+++.+|+.|+++|+++.+++|+.++++.+.+. .++++++++.+.+
T Consensus 108 ~~~--~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~ 165 (516)
T PLN02183 108 IAI--SYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSS 165 (516)
T ss_pred cch--hccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 332 222212245566677999999999843799999999998886 4678999999864
No 11
>PLN02971 tryptophan N-hydroxylase
Probab=99.91 E-value=7.2e-23 Score=155.31 Aligned_cols=133 Identities=23% Similarity=0.407 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCccccccccCC-CC-chHHHHHHHHHhC-CeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 29 RKGLPPGPRPYPVIGNLLELG-GK-PHKSLAKLAKIHG-PIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~~-~~-~~~~~~~~~~~yg-~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
+.+.||||+++|++|+++.+. +. .+..+.+|+++|| +++++++|+.++++++||+++++++.+++..|.+++.....
T Consensus 55 ~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~ 134 (543)
T PLN02971 55 LHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQ 134 (543)
T ss_pred CCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccch
Confidence 447899999999999998873 22 3677899999999 89999999999999999999999999988889988754433
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
+.++....+++++.+|+.|+++|+++.++.++....+.+.+.++++++++++.+.+
T Consensus 135 --~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 190 (543)
T PLN02971 135 --KILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYN 190 (543)
T ss_pred --hhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442223456777799999999999545676667777888888888888887754
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.90 E-value=1.2e-22 Score=152.84 Aligned_cols=136 Identities=35% Similarity=0.570 Sum_probs=111.1
Q ss_pred cCCCCCCCCCCCCCccccccccC-CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccc
Q 038027 26 SGKRKGLPPGPRPYPVIGNLLEL-GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPES 104 (167)
Q Consensus 26 ~~~~~~~~pgp~~~p~~g~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~ 104 (167)
.++..+.||||+++|++|+++.+ ..+++..+.+|+++||+++++++++.++++++||+++++++.++...|.+++....
T Consensus 24 ~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~ 103 (502)
T PLN02966 24 KTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRG 103 (502)
T ss_pred ccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCcc
Confidence 34445778999999999999887 45688999999999999999999999999999999999999887777776654333
Q ss_pred cccCccccCCcceeeCCCChHHHHHHhH-hhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 105 ILSQPYQHHEFSLVWLPVSPLWRSLRKI-CNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~-~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
. ........++.+..+|+.|+++|+. + ++.|+.++++.+.+.+.++++++++.|.+.
T Consensus 104 ~--~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~ 161 (502)
T PLN02966 104 H--EFISYGRRDMALNHYTPYYREIRKMGM-NHLFSPTRVATFKHVREEEARRMMDKINKA 161 (502)
T ss_pred c--eeeccCcceeeeCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2222222334455569999999998 6 799999999999999999999999999753
No 13
>PLN02290 cytokinin trans-hydroxylase
Probab=99.90 E-value=9.6e-23 Score=153.93 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCccccccccCC-------------------CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHH
Q 038027 29 RKGLPPGPRPYPVIGNLLELG-------------------GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAIL 89 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~~-------------------~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~ 89 (167)
..+.+|||+++|++||++.+. .+....+.+|+++|||++++++++.++++++||+++++++
T Consensus 40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il 119 (516)
T PLN02290 40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL 119 (516)
T ss_pred HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence 457899999999999987762 2233457889999999999999999999999999999999
Q ss_pred HhcccccCCCCCccccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 90 KEHDSLFCDRKVPESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
.++. .+..++..... ......+.+++++ +|+.|+++|+.+ ++.|+.++++.+.+.+.++++++++.|.+.
T Consensus 120 ~~~~-~~~~r~~~~~~--~~~~~~g~~l~~~-~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~ 189 (516)
T PLN02290 120 TKYN-TVTGKSWLQQQ--GTKHFIGRGLLMA-NGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKA 189 (516)
T ss_pred hcCC-CCCCCcchhhh--HHHHHhcCCcccc-CchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8763 34444322111 0111124566555 599999999999 799999999999999999999999999753
No 14
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.89 E-value=1.7e-22 Score=150.68 Aligned_cols=128 Identities=21% Similarity=0.285 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCccccccccC-CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccccc
Q 038027 29 RKGLPPGPRPYPVIGNLLEL-GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILS 107 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~ 107 (167)
+.+.||||+++|++|+++.+ ..+++..+.+++++||+++++++++.++++++||+++++++.++...|... ......
T Consensus 33 ~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~--~~~~~~ 110 (463)
T PLN02196 33 KLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPT--FPASKE 110 (463)
T ss_pred CCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccccc--CchHHH
Confidence 34667788889999998775 578899999999999999999999999999999999999998776666321 111100
Q ss_pred CccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHH
Q 038027 108 QPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVE 162 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~ 162 (167)
...+ +.++++ .+|+.|+++|+++ ++.|+.++++.+.+.++++++++++.|.
T Consensus 111 ~~~g--~~~l~~-~~g~~w~~~Rk~l-~~~f~~~~l~~~~~~i~~~~~~~~~~~~ 161 (463)
T PLN02196 111 RMLG--KQAIFF-HQGDYHAKLRKLV-LRAFMPDAIRNMVPDIESIAQESLNSWE 161 (463)
T ss_pred HHcC--cccccc-cCcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHcCC
Confidence 1122 234444 4599999999999 7999999999999999999999998874
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.88 E-value=1.8e-22 Score=150.63 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=104.4
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 26 SGKRKGLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 26 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
++.+.+.||||+++|++|+++.+..++..++.+++++||+++++++++.++++++||+++++++.++...|.++......
T Consensus 26 ~~~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 105 (463)
T PLN02774 26 RYSKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML 105 (463)
T ss_pred ccCCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH
Confidence 34445677899999999998877556778899999999999999999999999999999999998766666443222222
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHH-hHHHHHHHHHHHHHHHHH
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDA-NQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~-~~~~~~~~~~~~~~~l~~ 163 (167)
..++ +.+++ +.+|+.|+.+|+++ ++.|+...++. +.+.+.+.+++++++|.+
T Consensus 106 --~~lg--~~~~~-~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (463)
T PLN02774 106 --DILG--TCNIA-AVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDG 158 (463)
T ss_pred --HHhC--ccchh-hcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2222 23444 44699999999999 79999999986 789999999999888754
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.88 E-value=2.5e-22 Score=150.78 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=100.3
Q ss_pred CCCCCCCCCCCccccccccC-----CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcc
Q 038027 29 RKGLPPGPRPYPVIGNLLEL-----GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPE 103 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~-----~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~ 103 (167)
+.+.||||+++|++||++.+ ...++..+.+++++||+++++++++.++++++||+++++++.+++..|.++....
T Consensus 36 ~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~ 115 (490)
T PLN02500 36 RFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRS 115 (490)
T ss_pred CCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchH
Confidence 34778999999999997643 1346678899999999999999999999999999999999988776665432221
Q ss_pred ccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHH-hHHHHHHHHHHHHHHHHH
Q 038027 104 SILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDA-NQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~-~~~~~~~~~~~~~~~l~~ 163 (167)
.. ..++ +.++++. +|+.|+++|+++ ++.|+..+++. +.+.+.+.+.++++.|.+
T Consensus 116 ~~--~~~g--~~~~~~~-~g~~wr~~Rk~~-~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (490)
T PLN02500 116 IG--GILG--KWSMLVL-VGDMHRDMRSIS-LNFLSHARLRTHLLKEVERHTLLVLDSWKE 170 (490)
T ss_pred HH--HHhC--ccccccc-CCHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 2222 2345554 599999999999 79999999987 567888888888887753
No 17
>PLN02655 ent-kaurene oxidase
Probab=99.87 E-value=2.4e-21 Score=144.70 Aligned_cols=129 Identities=24% Similarity=0.386 Sum_probs=105.0
Q ss_pred CCCCCCCccccccccCC-CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCccc
Q 038027 33 PPGPRPYPVIGNLLELG-GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQPYQ 111 (167)
Q Consensus 33 ~pgp~~~p~~g~~~~~~-~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 111 (167)
||||+++|++|+++++. .+++..+.+|+++||+++++++++.++++++||+++++|+.++...|.+++..... ..++
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~--~~~~ 78 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKAL--TVLT 78 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHH--HHHh
Confidence 68999999999998884 56889999999999999999999999999999999999999888888877644333 3232
Q ss_pred cCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 112 HHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 112 ~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
..+..+++..+|+.|+++|+.+.++.|+...++.+.+.+.+.++++++.+.+
T Consensus 79 ~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~ 130 (466)
T PLN02655 79 RDKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHA 130 (466)
T ss_pred cCCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHh
Confidence 2223344555699999999866467788888888999988888888888764
No 18
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.85 E-value=2.3e-20 Score=140.22 Aligned_cols=128 Identities=19% Similarity=0.258 Sum_probs=101.6
Q ss_pred CCCCCCCCCCCccccccccC-----CCCchHHHHHHHHHhCC--eeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCC
Q 038027 29 RKGLPPGPRPYPVIGNLLEL-----GGKPHKSLAKLAKIHGP--IMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKV 101 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~-----~~~~~~~~~~~~~~yg~--i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~ 101 (167)
..+.||||.++|++|+++.+ ..+++.++.+++++||+ ++++++++.++++++||+++++|+.++ ..|.++..
T Consensus 40 ~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~ 118 (490)
T PLN02302 40 QPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWP 118 (490)
T ss_pred CCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCc
Confidence 34788999999999998875 24688899999999997 789999999999999999999999764 45554432
Q ss_pred ccccccCccccCCcceeeCCCChHHHHHHhHhhhccCc-hhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 102 PESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFT-NQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs-~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
.... ..+ +.+.+...+|+.|+++|+.+ ++.|+ .++++.+.+.+.+++.++++.+..
T Consensus 119 ~~~~--~~~---g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~ 175 (490)
T PLN02302 119 ESTV--ELI---GRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWSK 175 (490)
T ss_pred hhHH--HHh---ccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 222 23444445699999999999 79995 778999999999999999998853
No 19
>PLN03018 homomethionine N-hydroxylase
Probab=99.83 E-value=5.9e-19 Score=133.64 Aligned_cols=130 Identities=24% Similarity=0.352 Sum_probs=99.6
Q ss_pred CCCCCCCCCccccccccCC-CCch-HHHHHHHHHh-CCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccccc
Q 038027 31 GLPPGPRPYPVIGNLLELG-GKPH-KSLAKLAKIH-GPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILS 107 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~~-~~~~-~~~~~~~~~y-g~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~ 107 (167)
+.||||+++|++|+++.+. .++. ..+.++.++| |+|+++++++.++++++||+++++++.+++..|.+++.....
T Consensus 40 ~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~-- 117 (534)
T PLN03018 40 QLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM-- 117 (534)
T ss_pred CCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh--
Confidence 5789999999999998872 2332 3455666666 799999999999999999999999999888889888755443
Q ss_pred CccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhH-HHHHHHHHHHHHHHHH
Q 038027 108 QPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQ-DLRRKKIKDLLAYVEE 163 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~-~~~~~~~~~~~~~l~~ 163 (167)
+.++..+.++++..+|+.|+++|+.+ ++.|...+...+. +.+++++.++++.+.+
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVI-TTEIMSVKTLNMLEAARTIEADNLIAYIHS 173 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442234577776799999999999 6887655555544 5555678899998875
No 20
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.83 E-value=2.2e-19 Score=135.17 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccccCCCC---chHHHHHHHHHhCCeeE---EEeCCe
Q 038027 1 MDLLISCILWLVFTLVWVMALSFISSGKRKGLPPGPRPYPVIGNLLELGGK---PHKSLAKLAKIHGPIMS---LRLGQV 74 (167)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~p~~g~~~~~~~~---~~~~~~~~~~~yg~i~~---~~~~~~ 74 (167)
|+|+.++-.-++...+..+...+...+++.+..|||+++|++|+++.+..+ ..+.+.+...+||..++ .++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 80 (500)
T PLN02169 1 MAMLGLLEFFVAFIFFLVCLFTCFFIHKKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGT 80 (500)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCC
Confidence 555554433222222222223333345555678999999999999766222 23333444445786555 577899
Q ss_pred eEEEecCHHHHHHHHHhcccccCCCCCccccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHh--HHHHHH
Q 038027 75 TTVVISSPSMAKAILKEHDSLFCDRKVPESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDAN--QDLRRK 152 (167)
Q Consensus 75 ~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~--~~~~~~ 152 (167)
++++++||+++++|+.++...|.++...... ....|+++++++ |+.|+++|+++ +|.|+.++++.+ .+.+.+
T Consensus 81 ~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~----~~~~g~gl~~~~-g~~Wr~~Rk~l-~p~F~~~~~~~~~~~~~~~~ 154 (500)
T PLN02169 81 DMLFTADPKNIHHILSSNFGNYPKGPEFKKI----FDVLGEGILTVD-FELWEDLRKSN-HALFHNQDFIELSLSSNKSK 154 (500)
T ss_pred CeEEEcCHHHHHHHHhhCcccCCCcHHHHHH----HHhhcCcccccC-cHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999998877777776433222 122357777765 99999999999 799999987653 366777
Q ss_pred HHHHHHHHHHH
Q 038027 153 KIKDLLAYVEE 163 (167)
Q Consensus 153 ~~~~~~~~l~~ 163 (167)
+++.+++.+++
T Consensus 155 ~~~~l~~~l~~ 165 (500)
T PLN02169 155 LKEGLVPFLDN 165 (500)
T ss_pred HHHHHHHHHHH
Confidence 78888887764
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.81 E-value=1.6e-19 Score=134.51 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCCCccccccccC-----CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCC
Q 038027 27 GKRKGLPPGPRPYPVIGNLLEL-----GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKV 101 (167)
Q Consensus 27 ~~~~~~~pgp~~~p~~g~~~~~-----~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~ 101 (167)
.++.+.||||.++|++|+++.+ ..+++.++.+++++||+|+++++++.++++++||+++++++.+++..|..+..
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 3445778899999999999876 24688899999999999999999999999999999999999887777765432
Q ss_pred ccccccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHh-HHHHHHHHHHHHHHHH
Q 038027 102 PESILSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDAN-QDLRRKKIKDLLAYVE 162 (167)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~-~~~~~~~~~~~~~~l~ 162 (167)
.... ..++ .+.++..+|+.|+++|+++ ++.|+..+++.+ .+.+.+.+.++++.+.
T Consensus 83 ~~~~--~l~g---~~~~~~~~g~~wr~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (452)
T PLN03141 83 KSLT--ELMG---KSSILLINGSLQRRVHGLI-GAFLKSPHLKAQITRDMERYVSESLDSWR 138 (452)
T ss_pred hhHH--HHhC---cccccccCcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2111 2232 3333444699999999999 799998888764 5677777777776653
No 22
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.81 E-value=4e-19 Score=132.82 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=91.9
Q ss_pred CCCCCCCCCccccccccCC-----CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 31 GLPPGPRPYPVIGNLLELG-----GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~~-----~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
+.||||.++|++|+++.+. .++..++.+++++||+++++++++.++++++||+++++++.++...|.++......
T Consensus 30 ~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~ 109 (472)
T PLN02987 30 RLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGSIS 109 (472)
T ss_pred CCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHHHH
Confidence 5688999999999998761 45788899999999999999999999999999999999999887777655322222
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHH-HHHHHHHHHHHHH
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQD-LRRKKIKDLLAYV 161 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~-~~~~~~~~~~~~l 161 (167)
..++ +.+++++ +|+.|+++|+++ .+.++.+.++.+.. .+.+.+.+.++.|
T Consensus 110 --~~lg--~~~l~~~-~g~~wr~~R~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (472)
T PLN02987 110 --NLLG--KHSLLLM-KGNLHKKMHSLT-MSFANSSIIKDHLLLDIDRLIRFNLDSW 160 (472)
T ss_pred --HHhC--ccccccc-CcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 3456665 599999999998 56555556655442 2334444444443
No 23
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.80 E-value=5.2e-19 Score=132.86 Aligned_cols=130 Identities=28% Similarity=0.364 Sum_probs=107.7
Q ss_pred CCCCCCCCCCCccccccccCC---CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 29 RKGLPPGPRPYPVIGNLLELG---GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 29 ~~~~~pgp~~~p~~g~~~~~~---~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
..+.+|||.++|++|++..+. .+...++.++..+||++++.|+++.++++++||+.+++|+.++...+.+.+.....
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 457789999999999999882 34667789999999999999999999999999999999997656665555444422
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
+.. ..|+|++++. |+.|+++||++ +|+|+.+.++.+.+.+.+++..++..++.
T Consensus 113 ~~~---~lG~gll~~~-g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~ 165 (497)
T KOG0157|consen 113 LKP---WLGDGLLFSD-GEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLEL 165 (497)
T ss_pred HHH---HhcCccccCC-chHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 3357888888 99999999999 79999999999999999999888877765
No 24
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.80 E-value=3.5e-20 Score=137.25 Aligned_cols=130 Identities=28% Similarity=0.526 Sum_probs=106.2
Q ss_pred CCCCCCCccccccccCC--CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccC-c
Q 038027 33 PPGPRPYPVIGNLLELG--GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQ-P 109 (167)
Q Consensus 33 ~pgp~~~p~~g~~~~~~--~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~-~ 109 (167)
||||+++|++|+++.+. +++++.+.+++++||||+++++++.++++++||+++++|+.++...+..++..... +. .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~-~~~~ 79 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWF-EIFR 79 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHH-HHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccc-cccc
Confidence 79999999999999984 67888999999999999999999999999999999999998877666554332222 01 0
Q ss_pred cccCCcceeeCCCChHHHHHHhHhhhccCchh-hHHHhHHHHHHHHHHHHHHHHHhcc
Q 038027 110 YQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQ-KLDANQDLRRKKIKDLLAYVEENCS 166 (167)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~-~l~~~~~~~~~~~~~~~~~l~~~~~ 166 (167)
....+.++++.. |+.|+++|+.+ .+.|+.. .+ .+.+.+.++++++++.|.+..+
T Consensus 80 ~~~~~~~l~~~~-~~~~~~~R~~~-~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~ 134 (463)
T PF00067_consen 80 GPFGGKGLFFSD-GERWRRQRRLL-APAFSSKKIL-KLEPLIDEEAEELIDQLRKKAG 134 (463)
T ss_dssp HHHTTTSSTTSS-HHHHHHHHHHH-HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccc-ccccccccccc-cccccccccc-cccccccccccccccccccccc
Confidence 112345655555 79999999999 7999999 66 8999999999999999987653
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.79 E-value=9.4e-19 Score=132.36 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=95.3
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHHh---CCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccccc
Q 038027 31 GLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIH---GPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILS 107 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~y---g~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~ 107 (167)
+.+|||+++|++|+++.+..+ +..+.+|.++| |+++++++++.++++++||+++++|+.++...|.++.......
T Consensus 30 ~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~- 107 (516)
T PLN03195 30 RNRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM- 107 (516)
T ss_pred cccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH-
Confidence 457999999999998765222 34567777777 8999999999999999999999999987655665543221110
Q ss_pred CccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHH-HHHHHHHHHHHHH
Q 038027 108 QPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLR-RKKIKDLLAYVEE 163 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~-~~~~~~~~~~l~~ 163 (167)
..+ .+.+++. .+|+.|+++|+++ ++.|+.++++.+.+.+ .+.++.+++.+++
T Consensus 108 ~~~--~g~~l~~-~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~ 160 (516)
T PLN03195 108 EVL--LGDGIFN-VDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQ 160 (516)
T ss_pred HHH--hcCeeec-cCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2455544 5699999999999 7999999999999876 5557777777754
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.75 E-value=1.3e-17 Score=125.40 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=104.3
Q ss_pred CCCCCCCCCccccccccC-----CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCcccc
Q 038027 31 GLPPGPRPYPVIGNLLEL-----GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESI 105 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~-----~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~ 105 (167)
+...|-.+||++|..+.. .+..+..+.+|+++|||++++++++.++++++||+++++|+.+.+..|.+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~ 91 (489)
T PLN02936 12 RLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVS 91 (489)
T ss_pred ccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhh
Confidence 556788899999988876 577899999999999999999999999999999999999998766777766432221
Q ss_pred ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHH-HHHHHHHHHHHHHHHh
Q 038027 106 LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQD-LRRKKIKDLLAYVEEN 164 (167)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~-~~~~~~~~~~~~l~~~ 164 (167)
... .+.++++ .+|+.|+++|+++ +|.|+.++++.+.+ .+.++++++++.+.+.
T Consensus 92 --~~~--~~~~i~~-~~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~ 145 (489)
T PLN02936 92 --EFL--FGSGFAI-AEGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPV 145 (489)
T ss_pred --HHH--hcCcccc-CCchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2355555 4599999999999 79999999988765 7888999999998764
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.75 E-value=1.7e-17 Score=127.66 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=90.4
Q ss_pred CCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCccccCCcceeeCCCChHHHH
Q 038027 49 GGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQPYQHHEFSLVWLPVSPLWRS 128 (167)
Q Consensus 49 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~ 128 (167)
.+..+..+.+++++||||+++++++.++++++||+.+++|+.++...|.++...... ... .+.++++ .+|+.|++
T Consensus 150 ~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~--~~~--~g~~l~~-~dge~wr~ 224 (633)
T PLN02738 150 GEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEIL--EFV--MGKGLIP-ADGEIWRV 224 (633)
T ss_pred CchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHH--hhc--cCCceec-CCcHHHHH
Confidence 455778889999999999999999999999999999999998776677765432221 111 2355554 45999999
Q ss_pred HHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 129 LRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 129 ~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
+|+.+ +|.|+.+.++.+.+.+.++++++++++++.
T Consensus 225 rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~ 259 (633)
T PLN02738 225 RRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAA 259 (633)
T ss_pred HHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 799999999999999999999999999753
No 28
>PLN02648 allene oxide synthase
Probab=99.72 E-value=1.2e-17 Score=124.71 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=100.3
Q ss_pred CCCCCCCCCCccccccccC-----CCCchHHHHHHHHHhCC-eeEEEeCCeeE-------EEecCHHHHHHHHHh----c
Q 038027 30 KGLPPGPRPYPVIGNLLEL-----GGKPHKSLAKLAKIHGP-IMSLRLGQVTT-------VVISSPSMAKAILKE----H 92 (167)
Q Consensus 30 ~~~~pgp~~~p~~g~~~~~-----~~~~~~~~~~~~~~yg~-i~~~~~~~~~~-------v~~~~p~~i~~i~~~----~ 92 (167)
.+.|||+.++|++|....+ ..++..++.+.+++||+ ||+++++|.|+ ++++|||+++.++.+ +
T Consensus 16 ~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~ 95 (480)
T PLN02648 16 LREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDK 95 (480)
T ss_pred CCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccc
Confidence 3678999999999999764 45668999999999999 99999999666 999999999999974 3
Q ss_pred ccccCCCCCccccccCccccCCcc---eeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 93 DSLFCDRKVPESILSQPYQHHEFS---LVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
...+.... .... .++ |.+ .++..+|+.|+++|+++ .+.|+ .+++.+.+.|.+.+.++++.|..
T Consensus 96 ~~~~~~~~-~~~~--~l~---G~~~~~s~~~~~g~~H~r~Rrll-~~~f~-~~~~~~~~~m~~~~~~~~~~w~~ 161 (480)
T PLN02648 96 RDVFTGTY-MPST--AFT---GGYRVLSYLDPSEPKHAKLKSFL-FELLK-SRHRRFIPEFRAAFAELFDTWEA 161 (480)
T ss_pred cccceeee-ccCc--ccc---CCceeeeecCCCCchHHHHHHHH-HHHHH-HhhhhhhhHHHHHHHHHHHHHHH
Confidence 33344321 2222 333 333 55666799999999999 79999 57789999999999999999964
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=2.9e-15 Score=109.78 Aligned_cols=135 Identities=20% Similarity=0.310 Sum_probs=105.9
Q ss_pred CCCCCCCCCCccccccccC----CCCchHHHHHHHHHhCCeeEEE-eCCeeEEEecCHHHHHHHHHhcccccCCCC-Ccc
Q 038027 30 KGLPPGPRPYPVIGNLLEL----GGKPHKSLAKLAKIHGPIMSLR-LGQVTTVVISSPSMAKAILKEHDSLFCDRK-VPE 103 (167)
Q Consensus 30 ~~~~pgp~~~p~~g~~~~~----~~~~~~~~~~~~~~yg~i~~~~-~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~-~~~ 103 (167)
...+|||..+|++|.+..+ ..+.++.....+++||||++.. +|+.+.|.+.+|++++.++.+.+ .++-++ ...
T Consensus 49 ~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~ 127 (519)
T KOG0159|consen 49 FEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIE 127 (519)
T ss_pred hhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccc
Confidence 3678999999999998844 4678888999999999999999 78889999999999999998744 445553 211
Q ss_pred cc-ccCccccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHHhcc
Q 038027 104 SI-LSQPYQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEENCS 166 (167)
Q Consensus 104 ~~-~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~~~~ 166 (167)
.. .|+.......| ++..+|++|++.|..++...+.++.++.|.+.+++.+++++.++++..+
T Consensus 128 ~w~~~rd~~~~~~G-l~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~ 190 (519)
T KOG0159|consen 128 PWVAYRDFRGGVCG-LFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRD 190 (519)
T ss_pred hhhhhHHhhccCCC-cccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 11 12222222344 4555699999999999656688999999999999999999999987643
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.8e-14 Score=103.87 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=101.7
Q ss_pred CCCCCCCC-CccccccccCCCCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCc
Q 038027 31 GLPPGPRP-YPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQP 109 (167)
Q Consensus 31 ~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~ 109 (167)
..||.-.+ +|++|++..++.++.+++.+.++||||||++.++|+.+.++.+|+....++.......+-.........+.
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~v 110 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPV 110 (486)
T ss_pred CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhh
Confidence 46777665 79999999999999999999999999999999999999999999999999976533332221111111123
Q ss_pred cccCCcceeeCCCChHHHHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHH
Q 038027 110 YQHHEFSLVWLPVSPLWRSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAY 160 (167)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~ 160 (167)
+ |.++.....+....++.+.+ ...+...+++++.+.|.++..+.++.
T Consensus 111 F---g~~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~ 157 (486)
T KOG0684|consen 111 F---GKGVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFET 157 (486)
T ss_pred c---CCCccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhc
Confidence 3 47777777788899999999 79999999999999999999988876
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.47 E-value=1.6e-12 Score=98.32 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=86.0
Q ss_pred CccccccccCCCCchHHHHHHHHHhC-CeeEEEeCCeeEEEecCHHHHHHHHHhcccccCCCCCccccccCccccCCcce
Q 038027 39 YPVIGNLLELGGKPHKSLAKLAKIHG-PIMSLRLGQVTTVVISSPSMAKAILKEHDSLFCDRKVPESILSQPYQHHEFSL 117 (167)
Q Consensus 39 ~p~~g~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
.++.|+......+..+.+..+.++++ ..++++.++. ++++||+++++|+.++...|.+........... .|+++
T Consensus 49 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~---~g~gi 123 (502)
T PLN02426 49 AYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL---LGRGI 123 (502)
T ss_pred CCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh---cCCce
Confidence 45677776643455667767888877 5777766554 899999999999988777777654332211112 24676
Q ss_pred eeCCCChHHHHHHhHhhhccCchhhHHHhH--HHHHHHHHHHHHHHHHh
Q 038027 118 VWLPVSPLWRSLRKICNMHIFTNQKLDANQ--DLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 118 ~~~~~g~~w~~~R~~~~~~~fs~~~l~~~~--~~~~~~~~~~~~~l~~~ 164 (167)
+.+ +|+.|+++||.+ +|.|+.++++.+. +.+.+.++++++.+++.
T Consensus 124 ~~~-~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~ 170 (502)
T PLN02426 124 FNV-DGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSA 170 (502)
T ss_pred eec-CcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 599999999999 7999999998874 67777778888877653
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=1.2e-08 Score=75.53 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=77.1
Q ss_pred chHHHHHHHHHhCCeeEEEeCCee--EEEecCHHHHHHHHHhcccccCCCCCccccccC-ccccCCcceeeCCCChHHHH
Q 038027 52 PHKSLAKLAKIHGPIMSLRLGQVT--TVVISSPSMAKAILKEHDSLFCDRKVPESILSQ-PYQHHEFSLVWLPVSPLWRS 128 (167)
Q Consensus 52 ~~~~~~~~~~~yg~i~~~~~~~~~--~v~~~~p~~i~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~w~~ 128 (167)
+......+.+.||.+..+...+.. .+++++++++++++.++. .+.+....... +. .....+.+.++..+|++|++
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ll~~dg~~H~r 101 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLR-PRLLRPVLGDGSLLTLDGPEHTR 101 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-ccccccccccc-ccchhhhccccceeecCCHHHHH
Confidence 344455677788888887765554 899999999999997653 22222211111 00 11123455456666999999
Q ss_pred HHhHhhhccCchhhHHHhHHHHHHHHHHHHHHH
Q 038027 129 LRKICNMHIFTNQKLDANQDLRRKKIKDLLAYV 161 (167)
Q Consensus 129 ~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l 161 (167)
+||++ +++|++++++.+.+.|.+.+.++++.+
T Consensus 102 ~Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~ 133 (411)
T COG2124 102 LRKLL-APAFTPRALRGYRPLIREIADRLLDDL 133 (411)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 799999999999999999999999887
No 33
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=58.69 E-value=26 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHHhC---CeeEEE-eCCeeEEEecCHHHH--HHHHH
Q 038027 57 AKLAKIHG---PIMSLR-LGQVTTVVISSPSMA--KAILK 90 (167)
Q Consensus 57 ~~~~~~yg---~i~~~~-~~~~~~v~~~~p~~i--~~i~~ 90 (167)
.++.+..| +|..+. ...+--+.+.|++.+ ++.+.
T Consensus 74 ~~ii~aLGG~~NI~~v~~C~TRLRv~vkD~s~v~d~~~lk 113 (161)
T PRK09702 74 AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFK 113 (161)
T ss_pred HHHHHHcCCCCCccccccceeEEEEEeCChHhcccHHHHH
Confidence 34444444 444442 345555777887765 44443
No 34
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=58.45 E-value=26 Score=22.78 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=8.4
Q ss_pred HHHhcCCCCCCCCCCC
Q 038027 22 SFISSGKRKGLPPGPR 37 (167)
Q Consensus 22 ~~~~~~~~~~~~pgp~ 37 (167)
.++.++...+.||.|.
T Consensus 168 ~~F~RR~~rrsppeps 183 (215)
T PF05084_consen 168 WFFLRRTGRRSPPEPS 183 (215)
T ss_pred HHHHHhhccCCCCCCC
Confidence 3334444455666665
No 35
>PHA01327 hypothetical protein
Probab=57.82 E-value=4.7 Score=19.48 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=15.5
Q ss_pred CcceeeCCCChHHHHHHhHh
Q 038027 114 EFSLVWLPVSPLWRSLRKIC 133 (167)
Q Consensus 114 ~~~~~~~~~g~~w~~~R~~~ 133 (167)
.++.+...+|+.|++.|.-+
T Consensus 10 kr~~vinehge~wqer~drm 29 (49)
T PHA01327 10 KRNNVINEHGEEWQERKDRM 29 (49)
T ss_pred ccchHHHhhHHHHHHHHHHH
Confidence 35556777899999988777
No 36
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=55.72 E-value=19 Score=15.92 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=9.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 038027 1 MDLLISCILWLVFTLVWVMALSF 23 (167)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (167)
|....++...+.+.+++++++-.
T Consensus 1 M~~~~wls~a~a~~Lf~YLv~AL 23 (29)
T PRK14740 1 MTVLDWLSLALATGLFVYLLVAL 23 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.50 E-value=20 Score=22.23 Aligned_cols=10 Identities=10% Similarity=-0.028 Sum_probs=4.0
Q ss_pred HHHHHHhcCC
Q 038027 19 MALSFISSGK 28 (167)
Q Consensus 19 ~~~~~~~~~~ 28 (167)
++.++.+|++
T Consensus 83 li~y~irR~~ 92 (122)
T PF01102_consen 83 LISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 3334444433
No 38
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=51.76 E-value=24 Score=16.07 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.8
Q ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHh
Q 038027 138 FTNQKLDANQDLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 138 fs~~~l~~~~~~~~~~~~~~~~~l~~~ 164 (167)
.+.+.+.++...--+.+++.+.+++++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQ 29 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHc
Confidence 355667777777778889999888765
No 39
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=49.01 E-value=52 Score=20.32 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 50 GKPHKSLAKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 50 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
.+....+.+|.++||.+.-.. +...+...|++.++++...
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhC
Confidence 344567789999999765432 4667889999999999854
No 40
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=46.91 E-value=55 Score=18.75 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=30.0
Q ss_pred ChHHHHHHhHhhhccCchhhHHHhHHH-----HHHHHHHHHHHHHHhc
Q 038027 123 SPLWRSLRKICNMHIFTNQKLDANQDL-----RRKKIKDLLAYVEENC 165 (167)
Q Consensus 123 g~~w~~~R~~~~~~~fs~~~l~~~~~~-----~~~~~~~~~~~l~~~~ 165 (167)
|..|++.=+-+ .|+...++.+..- +.+.+.+++..|.+..
T Consensus 13 G~~Wk~lar~L---G~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~ 57 (86)
T cd08777 13 GKKWKRCARKL---GFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKE 57 (86)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHcc
Confidence 88999876666 3778888776633 5677999999998753
No 41
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=45.69 E-value=67 Score=19.38 Aligned_cols=11 Identities=36% Similarity=0.323 Sum_probs=7.6
Q ss_pred CCccccccccC
Q 038027 38 PYPVIGNLLEL 48 (167)
Q Consensus 38 ~~p~~g~~~~~ 48 (167)
.-|++||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 46888887654
No 42
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=44.97 E-value=24 Score=18.21 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred hCCeeEEEeCCeeEEEec
Q 038027 63 HGPIMSLRLGQVTTVVIS 80 (167)
Q Consensus 63 yg~i~~~~~~~~~~v~~~ 80 (167)
-|+++++.-||+.++|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 389999999999998873
No 43
>PRK13664 hypothetical protein; Provisional
Probab=42.76 E-value=52 Score=17.27 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCC
Q 038027 5 ISCILWLVFTLVWVMALSFISSGKRK----GLPPGPR 37 (167)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~pgp~ 37 (167)
+++++++++..++.-.+.-+++..+. +.|+-|+
T Consensus 8 WWilill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LPP 44 (62)
T PRK13664 8 WWILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELPP 44 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCC
Confidence 34434344444444444545443221 4555554
No 44
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=42.46 E-value=69 Score=18.62 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=30.0
Q ss_pred ChHHHHHHhHhhh---ccCchhhHHHhH-----HHHHHHHHHHHHHHHHhc
Q 038027 123 SPLWRSLRKICNM---HIFTNQKLDANQ-----DLRRKKIKDLLAYVEENC 165 (167)
Q Consensus 123 g~~w~~~R~~~~~---~~fs~~~l~~~~-----~~~~~~~~~~~~~l~~~~ 165 (167)
|..||+.=+.+ . .+++-..+.... .-+.+.+.+++.+|.+..
T Consensus 13 Gr~WK~laR~L-g~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~e 62 (90)
T cd08780 13 GKKWKPVGRSL-QKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSE 62 (90)
T ss_pred hHHHHHHHHHH-cccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhc
Confidence 88999985555 3 347777776543 237788999999998753
No 45
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=37.96 E-value=83 Score=19.09 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=23.7
Q ss_pred HHHHhHhhhccCchhhHHHhHHHHHHHHHHHHHHHHH
Q 038027 127 RSLRKICNMHIFTNQKLDANQDLRRKKIKDLLAYVEE 163 (167)
Q Consensus 127 ~~~R~~~~~~~fs~~~l~~~~~~~~~~~~~~~~~l~~ 163 (167)
+.+|....+.......+..+...+++++.++++.+.+
T Consensus 35 ke~~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~~ 71 (111)
T PF14198_consen 35 KEHKPILYNNLLLSGKLNEHLAEIDEQAQERFERLVE 71 (111)
T ss_pred HHhHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443344455566777777788888888877654
No 46
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=37.60 E-value=81 Score=17.99 Aligned_cols=9 Identities=0% Similarity=0.014 Sum_probs=3.5
Q ss_pred HHHHHhcCC
Q 038027 20 ALSFISSGK 28 (167)
Q Consensus 20 ~~~~~~~~~ 28 (167)
+++..+++.
T Consensus 19 liya~YRR~ 27 (92)
T PHA02681 19 IVIMMYRRS 27 (92)
T ss_pred HHHHHHHhc
Confidence 333344443
No 47
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=37.51 E-value=75 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCChHHHHH---HhHhhhccCchhhHHHhHHHHH
Q 038027 121 PVSPLWRSL---RKICNMHIFTNQKLDANQDLRR 151 (167)
Q Consensus 121 ~~g~~w~~~---R~~~~~~~fs~~~l~~~~~~~~ 151 (167)
.+++.|... |... ++.+...........|.
T Consensus 76 ~d~e~Wl~m~~~RN~t-sHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 76 DDGEIWLDMLEDRNLT-SHTYDEETAEEIYERIP 108 (124)
T ss_dssp SHHHHHHHHHHHHHHG-GGTTSHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHhccc-cCCCCHHHHHHHHHHHH
Confidence 448889774 7778 78888877666555444
No 48
>PF12669 P12: Virus attachment protein p12 family
Probab=35.20 E-value=53 Score=17.29 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.4
Q ss_pred HHHHhc
Q 038027 21 LSFISS 26 (167)
Q Consensus 21 ~~~~~~ 26 (167)
..+++.
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 344433
No 49
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=35.06 E-value=41 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=23.8
Q ss_pred hCCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 63 HGPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 63 yg~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
|.++..++.|+..+++..|++.+++++.-
T Consensus 136 y~~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 136 YSSLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred hhhhhhheeccceEEEcCChHHHHHHHHH
Confidence 34567777788999999999999999853
No 50
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=34.63 E-value=69 Score=16.36 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 038027 11 LVFTLVWVMALSFISSG 27 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (167)
+++.++.+.+...++.+
T Consensus 11 iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 11 IVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34444444455555443
No 51
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=33.45 E-value=53 Score=14.63 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 038027 11 LVFTLVWVMALS 22 (167)
Q Consensus 11 ~~~~~~~~~~~~ 22 (167)
+.++++++++.-
T Consensus 11 va~~L~vYL~~A 22 (29)
T PRK14759 11 VSLGLLIYLTYA 22 (29)
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 52
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=32.39 E-value=1.2e+02 Score=18.41 Aligned_cols=59 Identities=25% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHHhCCeeEEEeCCe------eEEEecCHHHHHHHHHh
Q 038027 31 GLPPGPRPYPVIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQV------TTVVISSPSMAKAILKE 91 (167)
Q Consensus 31 ~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~------~~v~~~~p~~i~~i~~~ 91 (167)
+.+|.-..+-.+-|++. +--.+.+.++.-+||+|..+.+|.. -.||-.|-..++..+..
T Consensus 12 rlppevnriLyirNLp~--~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPF--KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CCChhhheeEEEecCCc--cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 33343333434444432 2345677888899999999988753 56777777777777644
No 53
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=31.94 E-value=57 Score=21.52 Aligned_cols=40 Identities=30% Similarity=0.575 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHhC-CeeEEEeCCe----eEEEecCHHHHHHH
Q 038027 49 GGKPHKSLAKLAKIHG-PIMSLRLGQV----TTVVISSPSMAKAI 88 (167)
Q Consensus 49 ~~~~~~~~~~~~~~yg-~i~~~~~~~~----~~v~~~~p~~i~~i 88 (167)
++...+...++.+++| |+..+.++|. .-++++||-.+-.+
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAGvl 197 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAGVL 197 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhhhh
Confidence 5678889999999999 8999987764 23688998665433
No 54
>PF14851 FAM176: FAM176 family
Probab=31.10 E-value=1.3e+02 Score=19.56 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 038027 30 KGLPPGPR 37 (167)
Q Consensus 30 ~~~~pgp~ 37 (167)
.+..+.|.
T Consensus 53 ~r~~~~~~ 60 (153)
T PF14851_consen 53 CRELPSPK 60 (153)
T ss_pred ccccCCcc
Confidence 34445554
No 55
>PRK02302 hypothetical protein; Provisional
Probab=30.98 E-value=1.1e+02 Score=17.75 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHh-cccccCCC
Q 038027 58 KLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKE-HDSLFCDR 99 (167)
Q Consensus 58 ~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~-~~~~~~~~ 99 (167)
+-.++||+|..+.--.+-++.-.|.+.+.++..+ ..-.|.+.
T Consensus 21 r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~ 63 (89)
T PRK02302 21 RKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKK 63 (89)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHHHhcCCCeeE
Confidence 3346799999886555556666677778887754 33344443
No 56
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=30.74 E-value=87 Score=19.85 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=3.4
Q ss_pred ChHHHHH
Q 038027 123 SPLWRSL 129 (167)
Q Consensus 123 g~~w~~~ 129 (167)
|+.|-..
T Consensus 95 G~~W~~f 101 (146)
T PF14316_consen 95 GQAWLQF 101 (146)
T ss_pred HHHHHHH
Confidence 5555443
No 57
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.46 E-value=1.1e+02 Score=17.13 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.8
Q ss_pred HHHHHHHHhcc
Q 038027 83 SMAKAILKEHD 93 (167)
Q Consensus 83 ~~i~~i~~~~~ 93 (167)
+..+.|+...+
T Consensus 59 ~tLE~ILd~e~ 69 (75)
T TIGR02976 59 DTLERILDAEH 69 (75)
T ss_pred HHHHHHHcCCC
Confidence 34444444433
No 58
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.42 E-value=1.2e+02 Score=17.33 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=26.7
Q ss_pred ChHHHHHHhHhhhccCchhhHHHhH---HHHHHHHHHHHHHHHHh
Q 038027 123 SPLWRSLRKICNMHIFTNQKLDANQ---DLRRKKIKDLLAYVEEN 164 (167)
Q Consensus 123 g~~w~~~R~~~~~~~fs~~~l~~~~---~~~~~~~~~~~~~l~~~ 164 (167)
|..|++.=+.+ .|+...+.... +-..+.+.+++..|.+.
T Consensus 18 G~~Wk~Lar~L---Gls~~dI~~i~~~~~~~~eq~~~mL~~W~~r 59 (86)
T cd08318 18 GEDWKTLAPHL---EMKDKEIRAIESDSEDIKMQAKQLLVAWQDR 59 (86)
T ss_pred hhhHHHHHHHc---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 88998875555 36666665543 23467788888888775
No 59
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.36 E-value=1.2e+02 Score=21.87 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=28.0
Q ss_pred CCCCCccccccccCCCCchHHHHHHHHHhC----CeeEEEeCCee
Q 038027 35 GPRPYPVIGNLLELGGKPHKSLAKLAKIHG----PIMSLRLGQVT 75 (167)
Q Consensus 35 gp~~~p~~g~~~~~~~~~~~~~~~~~~~yg----~i~~~~~~~~~ 75 (167)
|+.-+|+.|..+...........+..+.|+ +.+.+-+||++
T Consensus 128 ~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~n 172 (329)
T COG3660 128 GPNILPINGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNN 172 (329)
T ss_pred CCceeeccCCCCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCC
Confidence 566678888887765556666677777774 46666667754
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=28.83 E-value=86 Score=15.65 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHhCCeeEEEeC----CeeEEEecCHHHHHHHHHh
Q 038027 57 AKLAKIHGPIMSLRLG----QVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 57 ~~~~~~yg~i~~~~~~----~~~~v~~~~p~~i~~i~~~ 91 (167)
.+..++||+|..+.+. +.-.|-..+++.++.....
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~ 40 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ 40 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4677899999988763 3345667888888877753
No 61
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=28.64 E-value=1.3e+02 Score=17.50 Aligned_cols=55 Identities=9% Similarity=0.263 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHhcccccCCCCCccccccCccccCCcceeeCCC-ChHHHHHHhHhhhccCchhhHHH
Q 038027 80 SSPSMAKAILKEHDSLFCDRKVPESILSQPYQHHEFSLVWLPV-SPLWRSLRKICNMHIFTNQKLDA 145 (167)
Q Consensus 80 ~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~w~~~R~~~~~~~fs~~~l~~ 145 (167)
++.++.++.+.-+... ... .++ .....++..++ .+.|+++--.+ +..-|.+++++
T Consensus 8 t~~~al~~~lryk~~v-------a~h--gfl-fddg~~vw~e~~d~~w~rl~~vv-~al~ss~rm~~ 63 (111)
T PF02484_consen 8 TNMEALRDALRYKNEV-------ARH--GFL-FDDGDIVWSEDDDETWNRLCDVV-NALISSNRMQQ 63 (111)
T ss_pred ccHHHHHHHHHHHhhc-------ccc--ceE-ecCCcEEEecCChHHHHHHHHHH-HHHHhhHHHHh
Confidence 5678888887432111 011 111 12344566654 45699888777 56666665543
No 62
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=28.08 E-value=1.3e+02 Score=17.31 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038027 6 SCILWLVFTLVWVMALSFIS 25 (167)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (167)
|+.+++++.++++++....+
T Consensus 43 Wv~LA~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 43 WVSLAAFVVFLFLILLYMSW 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444434433
No 63
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=28.07 E-value=33 Score=15.31 Aligned_cols=8 Identities=38% Similarity=0.970 Sum_probs=4.0
Q ss_pred ChHHHHHH
Q 038027 123 SPLWRSLR 130 (167)
Q Consensus 123 g~~w~~~R 130 (167)
.++|+.+|
T Consensus 19 N~eWk~lR 26 (30)
T PF11616_consen 19 NEEWKKLR 26 (30)
T ss_dssp HHHHHH--
T ss_pred HHHHHHhc
Confidence 35777766
No 64
>PRK02886 hypothetical protein; Provisional
Probab=27.03 E-value=1.4e+02 Score=17.36 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=23.1
Q ss_pred HHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 59 LAKIHGPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 59 ~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
-.++||+|..+.--..-+++-.|.+.+.++...
T Consensus 20 ~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 346799999886555556666677778887754
No 65
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=25.37 E-value=1.4e+02 Score=17.01 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCe---eEEEeCCeeEEEecCH-----HHHHHHHHh
Q 038027 54 KSLAKLAKIHGPI---MSLRLGQVTTVVISSP-----SMAKAILKE 91 (167)
Q Consensus 54 ~~~~~~~~~yg~i---~~~~~~~~~~v~~~~p-----~~i~~i~~~ 91 (167)
+.-.++..+|.++ +++..++.+-+-+++. +.+.+|++.
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE 69 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQE 69 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHH
Confidence 4456677888876 8888888777776433 566666643
No 66
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.27 E-value=1.4e+02 Score=16.78 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.8
Q ss_pred HHHHHHHHhcc
Q 038027 83 SMAKAILKEHD 93 (167)
Q Consensus 83 ~~i~~i~~~~~ 93 (167)
+..+.|+...+
T Consensus 59 ~tLE~ILdae~ 69 (75)
T PF06667_consen 59 ETLERILDAEH 69 (75)
T ss_pred HHHHHHHcCCC
Confidence 34445554333
No 67
>PF15050 SCIMP: SCIMP protein
Probab=25.09 E-value=1.8e+02 Score=18.04 Aligned_cols=10 Identities=10% Similarity=0.178 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 038027 14 TLVWVMALSF 23 (167)
Q Consensus 14 ~~~~~~~~~~ 23 (167)
+++++++.+.
T Consensus 24 glIlyCvcR~ 33 (133)
T PF15050_consen 24 GLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 68
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=25.04 E-value=2.8e+02 Score=20.26 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=33.0
Q ss_pred cccccccCCCCchHHHHHHHHHhCCeeEEEeCC---------eeEEEecCHHHHHHHHHh
Q 038027 41 VIGNLLELGGKPHKSLAKLAKIHGPIMSLRLGQ---------VTTVVISSPSMAKAILKE 91 (167)
Q Consensus 41 ~~g~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~~~~p~~i~~i~~~ 91 (167)
++||+.. .--.+.+.++..+||+|..+.+.- .-+|...+++.+...+..
T Consensus 273 fV~NL~~--~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 273 FVYNLSP--DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 3455432 245667788899999988876532 237778888877777653
No 69
>PRK09458 pspB phage shock protein B; Provisional
Probab=24.80 E-value=1.4e+02 Score=16.76 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.3
Q ss_pred HHHHHHHHhcccc
Q 038027 83 SMAKAILKEHDSL 95 (167)
Q Consensus 83 ~~i~~i~~~~~~~ 95 (167)
+..+.|+...++.
T Consensus 59 ~tLE~ILDae~P~ 71 (75)
T PRK09458 59 QALEAILDAEHPN 71 (75)
T ss_pred HHHHHHHcccCCC
Confidence 4455555444433
No 70
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.35 E-value=93 Score=18.37 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 64 GPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 64 g~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
|.|..+.+.+...+|++.....++|-..
T Consensus 35 ~gVLti~~~~~~~~VINkQ~p~~QIWls 62 (97)
T TIGR03422 35 SGVLTLELPSVGTYVINKQPPNKQIWLS 62 (97)
T ss_pred CCEEEEEECCCCEEEEeCCChhhHHhee
Confidence 6789998888889999999999999744
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=22.95 E-value=3.4e+02 Score=20.46 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCeeEEEe-----CCeeEEEecCHHHHHHHHHh-cccccCCCCC
Q 038027 53 HKSLAKLAKIHGPIMSLRL-----GQVTTVVISSPSMAKAILKE-HDSLFCDRKV 101 (167)
Q Consensus 53 ~~~~~~~~~~yg~i~~~~~-----~~~~~v~~~~p~~i~~i~~~-~~~~~~~~~~ 101 (167)
-+-+.+-+.++|+|-++.+ -|...|...+++.+..+++. ++..|..|..
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 3445566889998776654 35567888999988887755 4455655543
No 72
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.56 E-value=1.7e+02 Score=16.98 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHh-cccccCCC
Q 038027 57 AKLAKIHGPIMSLRLGQVTTVVISSPSMAKAILKE-HDSLFCDR 99 (167)
Q Consensus 57 ~~~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~-~~~~~~~~ 99 (167)
.+..++||+|....--.+-++.-.+.+.+.+++.+ ..-.|.+.
T Consensus 19 aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~kl~~~kfVK~ 62 (90)
T COG4471 19 ARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEKLSRLKFVKK 62 (90)
T ss_pred hHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHHHhhceeeee
Confidence 34556899999886555566777778889988854 23344443
No 73
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=22.29 E-value=2.2e+02 Score=18.05 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHhCCeeEEEeC---------CeeEEEecCHHHHHHHHHh
Q 038027 51 KPHKSLAKLAKIHGPIMSLRLG---------QVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 51 ~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~~~~p~~i~~i~~~ 91 (167)
-..+.+.++.++||+|..+.+. +--+|-..+++.++.++..
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3567888889999998877652 3356778899999998864
No 74
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=22.27 E-value=1.1e+02 Score=18.46 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 64 GPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 64 g~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
|.|..+.+.....++++..+..++|-..
T Consensus 36 g~VlTl~f~ngs~iiINkQ~P~~qiWlA 63 (106)
T COG1965 36 GGVLTLTFDNGSQIIINKQEPLQQIWLA 63 (106)
T ss_pred CCEEEEEECCCcEEEEeCCChHHHHHhh
Confidence 6899999988889999999999999754
No 75
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.02 E-value=1.9e+02 Score=19.01 Aligned_cols=11 Identities=0% Similarity=0.093 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 038027 15 LVWVMALSFIS 25 (167)
Q Consensus 15 ~~~~~~~~~~~ 25 (167)
++++++++.++
T Consensus 108 ~i~yfvir~~R 118 (163)
T PF06679_consen 108 AILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHh
Confidence 33344444443
No 76
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=21.92 E-value=49 Score=16.89 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.5
Q ss_pred ChHHHHHHhHhhhccCchh
Q 038027 123 SPLWRSLRKICNMHIFTNQ 141 (167)
Q Consensus 123 g~~w~~~R~~~~~~~fs~~ 141 (167)
+..|+-.|... ||.|+.+
T Consensus 28 ~~~W~mr~~~~-Sp~yTT~ 45 (52)
T PF13438_consen 28 RRSWKMRREML-SPRYTTR 45 (52)
T ss_pred CcchHHHHHhc-CCCCcCC
Confidence 47899999999 8998865
No 77
>PRK14762 membrane protein; Provisional
Probab=21.88 E-value=87 Score=13.30 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=4.2
Q ss_pred CchHHHHHH
Q 038027 1 MDLLISCIL 9 (167)
Q Consensus 1 m~~~~~~~~ 9 (167)
|.+..|++.
T Consensus 1 mki~lw~i~ 9 (27)
T PRK14762 1 MKIILWAVL 9 (27)
T ss_pred CeeHHHHHH
Confidence 444555443
No 78
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.63 E-value=1.3e+02 Score=15.05 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038027 16 VWVMALSF 23 (167)
Q Consensus 16 ~~~~~~~~ 23 (167)
++++++..
T Consensus 24 ~~~F~~F~ 31 (54)
T PF06716_consen 24 LVVFIWFV 31 (54)
T ss_pred HHHHHHHH
Confidence 33333333
No 79
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.33 E-value=1.6e+02 Score=16.26 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHhCCeeEEEeCCeeEEEecCHHHHHHHHHh
Q 038027 59 LAKIHGPIMSLRLGQVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 59 ~~~~yg~i~~~~~~~~~~v~~~~p~~i~~i~~~ 91 (167)
-.++||+|.-+.=-.+-+++-.|.+.+.++..+
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred hHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 346799998886544555666666777777644
No 80
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=21.25 E-value=4e+02 Score=20.77 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCeeEEEeC------------CeeEEEecCHHHHHHHHHh
Q 038027 54 KSLAKLAKIHGPIMSLRLG------------QVTTVVISSPSMAKAILKE 91 (167)
Q Consensus 54 ~~~~~~~~~yg~i~~~~~~------------~~~~v~~~~p~~i~~i~~~ 91 (167)
+.+.+.+.+||+|..+.+. |.-.|...+++.++..+..
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 4567788999998888763 3346778888888877754
No 81
>PHA03049 IMV membrane protein; Provisional
Probab=21.14 E-value=1.6e+02 Score=16.05 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=5.8
Q ss_pred CCCCCCCCCccccc
Q 038027 31 GLPPGPRPYPVIGN 44 (167)
Q Consensus 31 ~~~pgp~~~p~~g~ 44 (167)
..+|.|...+...+
T Consensus 31 ~~~p~~e~ye~~e~ 44 (68)
T PHA03049 31 QNPPSQEKYEKMED 44 (68)
T ss_pred CCCCChhhccCchh
Confidence 34444444444443
No 82
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.00 E-value=2.1e+02 Score=21.07 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCCchHHHHHHHHHhC-CeeEEEe-CCeeEEEecCHHH----HHHHHH
Q 038027 49 GGKPHKSLAKLAKIHG-PIMSLRL-GQVTTVVISSPSM----AKAILK 90 (167)
Q Consensus 49 ~~~~~~~~~~~~~~yg-~i~~~~~-~~~~~v~~~~p~~----i~~i~~ 90 (167)
..+|.++-.+..++|| +++++++ ...|-+--+.++. +.++++
T Consensus 149 medP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLq 196 (403)
T COG2069 149 MEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQ 196 (403)
T ss_pred hhCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHH
Confidence 4778888899999999 8999875 5556666666543 345554
No 83
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.22 E-value=1.4e+02 Score=14.86 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 038027 7 CILWLVFTLVWVMALSFISSGKRKGLPPGP 36 (167)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp 36 (167)
+.++++++++...++.+.-+..+.-..-+|
T Consensus 7 ip~sl~l~~~~l~~f~Wavk~GQfdD~e~~ 36 (45)
T PF03597_consen 7 IPVSLILGLIALAAFLWAVKSGQFDDLEGP 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCcch
Confidence 333344333333333333333333333333
No 84
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=20.19 E-value=1.4e+02 Score=17.97 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHhHhhhccCchhhHHHhHHHHHH
Q 038027 126 WRSLRKICNMHIFTNQKLDANQDLRRK 152 (167)
Q Consensus 126 w~~~R~~~~~~~fs~~~l~~~~~~~~~ 152 (167)
-+++|++- -.|+...++.++..+.+
T Consensus 14 krKQRRIR--TTFTS~QLkELErvF~E 38 (125)
T KOG0484|consen 14 KRKQRRIR--TTFTSAQLKELERVFAE 38 (125)
T ss_pred HHHhhhhh--hhhhHHHHHHHHHHHHh
Confidence 35556655 57888888887776654
Done!