BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038028
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W5S1|CCH11_ARATH Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1
Length = 336
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/338 (64%), Positives = 269/338 (79%), Gaps = 10/338 (2%)
Query: 1 MADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNA 60
MADFQTST RA WIFTPQ+L E+YKA+N+RA+Q LEK GTTQ+EVD GS +YP+ + +
Sbjct: 1 MADFQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGS 60
Query: 61 KDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVM 120
D ++K + KPL+ +EE+ MR FYE K++EVCSAF FP+KIQATAL YFKRFYLQWSVM
Sbjct: 61 GDQADK--KLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQWSVM 118
Query: 121 EHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
+HHPK IMLTCVYAACKIEENHVSAEE+GKGI+QDH++IL YEM V Q+LEFDLIVY PY
Sbjct: 119 QHHPKEIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPY 178
Query: 181 RPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLAL 240
R +EGF+N+ME+F Q ++ E+Q L+ L + A E DK+MLTDAPLLFPPG QLAL
Sbjct: 179 RAIEGFVNNMEEFLQARDDEIQKLESLLKGATAEADKVMLTDAPLLFPPG------QLAL 232
Query: 241 AALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKHI 300
A+LR +N V V++++ YL +I+S+ NS H S+LT+ LD I+ V YK PSEKDMKHI
Sbjct: 233 ASLRIANGVLGVIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKCPSEKDMKHI 292
Query: 301 NRKLKSCWGH-GSHDVSKKREKKSKHKS-KSSHGMQNG 336
NRKLKSC GH SHD SKKREK+SKHKS +SS+ NG
Sbjct: 293 NRKLKSCLGHSSSHDESKKREKRSKHKSHRSSNDTPNG 330
>sp|Q10D80|CCH11_ORYSJ Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1
Length = 330
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/315 (60%), Positives = 244/315 (77%), Gaps = 10/315 (3%)
Query: 1 MADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVD-VDGSFSYPEPQNN 59
MADF+TSTHR WIF +L++++ A+N+RA +TL +YGTT+++VD VDGS SYPEP
Sbjct: 1 MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEP--- 57
Query: 60 AKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSV 119
A D+ S KPL+ EEE+ MRVFYE K++EVCSAF FP+KIQATA++YFKRFYLQWSV
Sbjct: 58 APDHVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSV 117
Query: 120 MEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPP 179
MEHHPK+IMLTC+Y++CK+EENHVSAEELGKGI QDHQ+ILN EMIV ++L+FDLIVY P
Sbjct: 118 MEHHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAP 177
Query: 180 YRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
YR +EGF++DMEDFC+ NGE Q L+DL +TA +VDK+MLTDAPLL+ PG QLA
Sbjct: 178 YRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPG------QLA 231
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
LAAL SN + +++N+E YL S+ SRQ+S I +++ I+ V + K P+ KDM+H
Sbjct: 232 LAALHKSNDMHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRH 291
Query: 300 INRKLKSCWGHGSHD 314
I+RKLK C S D
Sbjct: 292 IDRKLKHCLDPSSQD 306
>sp|P51946|CCNH_HUMAN Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1
Length = 323
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 155/278 (55%), Gaps = 33/278 (11%)
Query: 70 PKPLNIEEEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
P L EE ++ +YE +L E CS F P + TA +YFKRFYL SVME+HP+ I
Sbjct: 45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 128 MLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
MLTC + ACK++E +VS+ E G + + IL YE+++ Q L F LIV+ PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPY 164
Query: 181 RPLEGFINDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
RP EGF+ D++ + ++N E+ L +TA +++I LTDA LL+ P Q+ A
Sbjct: 165 RPFEGFLIDLKTRYPILENPEI-----LRKTADDFLNRIALTDAYLLYTPSQI------A 213
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
L A+ +S + + ESYLS L + + +S L + + ++ + V KY+ P +++
Sbjct: 214 LTAILSSAS-RAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAV 272
Query: 300 INRKLKSCWGH--GSHDVSKKRE---------KKSKHK 326
+ +KL+ C + ++KKR+ KKSKH+
Sbjct: 273 LKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHE 310
>sp|Q4R7U4|CCNH_MACFA Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1
Length = 323
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 155/278 (55%), Gaps = 33/278 (11%)
Query: 70 PKPLNIEEEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
P L EE ++ +YE +L E CS F P + TA +YFKRFYL SVME+HP+ I
Sbjct: 45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 128 MLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
MLTC + ACK++E +VS+ E G + + IL YE+++ Q L F LIV+ PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPY 164
Query: 181 RPLEGFINDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
RP EGF+ D++ + ++N E+ L +TA +++I LTDA LL+ P Q+ A
Sbjct: 165 RPFEGFLIDLKTRYPILENPEI-----LRKTADDFLNRIALTDAYLLYTPSQI------A 213
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
L A+ +S + + ESYLS L + + +S L + + ++ + V KY+ P +++
Sbjct: 214 LTAILSSAS-RAGITMESYLSESLMLRENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAV 272
Query: 300 INRKLKSCWGH--GSHDVSKKRE---------KKSKHK 326
+ +KL+ C + ++KKR+ KKSKH+
Sbjct: 273 LKQKLERCHSAELALNVITKKRKGYEDDDYVPKKSKHE 310
>sp|Q3ZBL9|CCNH_BOVIN Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1
Length = 320
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 156/282 (55%), Gaps = 33/282 (11%)
Query: 70 PKPLNIEEEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
P L EE ++ +YE +L E CS F P + TA +YFKRFYL SVME+HP+ I
Sbjct: 45 PVFLEPHEEITLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 128 MLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
MLTC + ACK++E +VS+ E G + + IL YE+++ Q L F LIV+ PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKTLEQILEYELLLIQQLNFHLIVHNPY 164
Query: 181 RPLEGFINDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
RP EGF+ D++ + ++N E+ L +TA ++++ LTDA LL+ P Q+ A
Sbjct: 165 RPFEGFLIDLKTRYPLLENPEI-----LRKTADDFLNRVALTDAHLLYTPSQI------A 213
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
L A+ +S + + ESYLS L + + +S L + + ++ + V KY+ P +++
Sbjct: 214 LTAILSSAS-RAGITMESYLSESLMLKENRTSLSQLLDIMKSMRNLVKKYEPPRPEEVAA 272
Query: 300 INRKLKSCWGH--GSHDVSKKRE---------KKSKHKSKSS 330
+ +KL+ C + V+KKR+ KKSKH+ S
Sbjct: 273 LKQKLERCHSAELALNVVTKKRKGYEDDDYVSKKSKHEEVCS 314
>sp|Q9R1A0|CCNH_RAT Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2
Length = 323
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 152/265 (57%), Gaps = 30/265 (11%)
Query: 72 PLNIE--EEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
PL +E EE ++ +YE +L E CS F P + TA +YFKRFYL SVME+HP+ I
Sbjct: 45 PLFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 128 MLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
MLTC + ACK++E +VS+ E G + + IL YE+++ Q L F LIV+ PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPY 164
Query: 181 RPLEGFINDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
RP EGF+ D++ + ++N E+ L +TA + +I LTDA LL+ P Q+ A
Sbjct: 165 RPFEGFLIDIKTRYPMLENPEI-----LRKTADDFLSRIALTDAYLLYTPSQI------A 213
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
L A+ +S + + ESYLS L + + +S L + + ++ + V KY+ P +++
Sbjct: 214 LTAILSSAS-RAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAI 272
Query: 300 INRKLKSCWGHGS----HDVSKKRE 320
+ +KL+ C H S + V+KKR+
Sbjct: 273 LKQKLERC--HSSDLALNMVTKKRK 295
>sp|Q61458|CCNH_MOUSE Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2
Length = 323
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 149/265 (56%), Gaps = 28/265 (10%)
Query: 70 PKPLNIEEEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
P L EE ++ +YE +L E CS F P + TA +YFKRFYL SVME+HP+ I
Sbjct: 45 PVFLEPHEELTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 128 MLTCVYAACKIEENHVSA-------EELGKGISQDHQMILNYEMIVYQALEFDLIVYPPY 180
MLTC + ACK++E +VS+ E G + + IL YE+++ Q L F LIV+ PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQERALEQILEYELLLIQQLNFHLIVHNPY 164
Query: 181 RPLEGFINDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLA 239
RP EGF+ D++ + ++N E+ L +TA + +I LTDA LL+ P Q+ A
Sbjct: 165 RPFEGFLIDIKTRYPMLENPEI-----LRKTADDFLSRIALTDAYLLYTPSQI------A 213
Query: 240 LAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKH 299
L A+ +S + + ESYLS L + + +S L + + ++ + V KY+ P ++
Sbjct: 214 LTAILSSAS-RAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSDEVAV 272
Query: 300 INRKLKSCWGHGS----HDVSKKRE 320
+ +KL+ C H S + V+KKR+
Sbjct: 273 LKQKLERC--HSSDLALNAVTKKRK 295
>sp|P51947|CCNH_XENLA Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1
Length = 323
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 144/241 (59%), Gaps = 22/241 (9%)
Query: 77 EEQSMRVFYENKLREVCSAF--YFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYA 134
EE ++ +YE +L + C+AF P + TA +YFKRFYL SVMEHHP+ IMLTCV+
Sbjct: 52 EELAICKYYEKRLLDFCNAFKPTMPKSVLGTACMYFKRFYLNNSVMEHHPRIIMLTCVFL 111
Query: 135 ACKIEENHVSAEE----LGK---GISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFI 187
ACK++E +VS+ + LG+ G + + IL YE+++ Q L F LIV+ PYRP EGF+
Sbjct: 112 ACKVDEFNVSSIQFVGNLGENPLGQEKILEQILEYELLLIQQLNFHLIVHNPYRPFEGFL 171
Query: 188 NDMED-FCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLALAALRNS 246
D++ + ++N E+ L ++A ++++ LTDA LLF P SVI L A L +
Sbjct: 172 IDVKTRYPMLENPEV-----LRKSADEFLNRVALTDACLLFAP----SVIALT-AILSTA 221
Query: 247 NKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKHINRKLKS 306
++ +N ESYL+ LS +++ +S L + + + V KY+ +++ + ++L
Sbjct: 222 SRAG--LNMESYLTECLSLKDNQETMSHLLDGMRRLKILVSKYEPARPEEVAALKKRLDH 279
Query: 307 C 307
C
Sbjct: 280 C 280
>sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1
Length = 286
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 68 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
S P L+ ++E S+ +YE K E+ A P+K+ A A++Y KRFYL+ S+M++ K +
Sbjct: 41 SEPNILSPDDELSLIHYYETKTLEIAMALNLPDKVSAPAIIYIKRFYLKNSIMQYGAKLV 100
Query: 128 MLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFI 187
ML+C++ ACK E+NH+ + I N E+I+ ++L F+LIVY P+RP+ G+I
Sbjct: 101 MLSCLFIACKTEDNHLDIDYYSNITKASPSDITNLEIIILESLNFNLIVYHPFRPMYGYI 160
Query: 188 NDMEDFCQVKNGELQM----LKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLAL 240
D+ D + N + L ET K + K + +D F P Q++++ L L
Sbjct: 161 LDINDNSAIYNNTNGVSPIKFDTLWETCKKSIQKSLFSDCCFEFHP-QIIALACLNL 216
>sp|P36613|CGM2_SCHPO Cyclin mcs2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mcs2 PE=1 SV=1
Length = 322
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 27/247 (10%)
Query: 4 FQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDN 63
F+ STH +WIFT ++L + N + + + ++ + QN
Sbjct: 6 FRDSTHYRDWIFTEEDLSKTRAKVNEKFTNIVRERMLEELSL-----------QNK---E 51
Query: 64 SEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHH 123
+ P L +EEE + +Y +L + SA P I++TA+L+FKRFYL SVME+
Sbjct: 52 ASLEVLPPTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYS 111
Query: 124 PKNIMLTCVYAACKIEENHVSAEELGKGISQDH-QMILNYEMIVYQALEFDLIVYPPYRP 182
PK I T ++ A K ++++S E+ K + + + +L YE V Q+L++DL V+ P+RP
Sbjct: 112 PKIISFTSLFLATKCNDHYISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRP 171
Query: 183 LEGFINDMEDFCQ--VKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLAL 240
L+GF+ D CQ + ++ + H+ +K + + + +D L P + AL
Sbjct: 172 LQGFLLD----CQTVLPKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSII------AL 221
Query: 241 AALRNSN 247
A+ ++N
Sbjct: 222 GAIYHTN 228
>sp|P37366|CCL1_YEAST Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CCL1 PE=1 SV=1
Length = 393
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 13/221 (5%)
Query: 13 WIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEK-HSRPK 71
W +T +L EK +N RAI +E + + E N ++ + ++
Sbjct: 58 WSYTKDQLQEKRVDTNARAIAYIE-----------ENLLKFREAHNLTEEEIKVLEAKAI 106
Query: 72 PLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTC 131
PL +EEE + FY K++ + P ++ ATA+ +F+RF+L+ SVM+ PK+I+ T
Sbjct: 107 PLTMEEELDLVNFYAKKVQVIAQHLNLPTEVVATAISFFRRFFLENSVMQIDPKSIVHTT 166
Query: 132 VYAACKIEENHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDME 191
++ ACK E +S + + +L +E + ++L+F L+ + PY+PL GF D++
Sbjct: 167 IFLACKSENYFISVDSFAQKAKSTRDSVLKFEFKLLESLKFSLLNHHPYKPLHGFFLDIQ 226
Query: 192 DFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQV 232
+ K +L + +++ K + +LTD + P Q+
Sbjct: 227 NVLYGK-VDLNYMGQIYDRCKKRITAALLTDVVYFYTPPQI 266
>sp|Q9GP34|CCNH_ECHMU Probable cyclin-H OS=Echinococcus multilocularis GN=CYCH PE=2 SV=1
Length = 335
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 132/314 (42%), Gaps = 45/314 (14%)
Query: 4 FQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDN 63
+ TST NW FT EL + + N + L + EV
Sbjct: 3 YVTSTQLYNWRFTQDELANQRQECNAAVRRRLSAQYRAKAEVK----------------G 46
Query: 64 SEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFY---FPNKIQATALLYFKRFYLQWSVM 120
+ + P L EEE + Y ++E+ F P + A Y KRFYL SVM
Sbjct: 47 GDVPAEPTFLTAEEEFIIVKRYIFAMKELFHQFSDSGLPVDVFGFAATYLKRFYLNNSVM 106
Query: 121 EHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDH----QMILNYEMIVYQALEFDLIV 176
++ P+ +MLT +Y ACK + + + I ++ +++++ E+ + + L++D+ +
Sbjct: 107 DYFPREMMLTALYLACKAADYPLGLQTFAAHIPRNREHYSEIVVHSELFLMEKLQYDIWI 166
Query: 177 YPPYRPLEGFINDMEDFCQVKNGE-----------LQMLKDLHETAKLEVDKIMLTDAPL 225
+ PYRPL G + D+ + + + GE M+ L + + K TD L
Sbjct: 167 HTPYRPLSGLLVDLLAYRKTQLGEPMTIEAGEVATADMMTSLKKEGYEIIHKWFQTDLCL 226
Query: 226 LFPPGQVLSVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHII-----SDLTENLD 280
P Q ALA L + + E ++ + + NS + + L E ++
Sbjct: 227 THSPS------QFALAVLLELGQKHPDLGVEKFVKNSVCEYNSSDELMEQKWTALNEKME 280
Query: 281 TIDSWVMKYKFPSE 294
I + + +++F S+
Sbjct: 281 QIQTMIGEFEFLSD 294
>sp|Q9C1M4|SSN8_GIBMO RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella
moniliformis GN=SSN8 PE=1 SV=1
Length = 319
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 57 QNNAKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQ 116
Q +DN+E R PL +++ + +++ +L + + ATA +Y KRFY +
Sbjct: 26 QKLEEDNAE-LVRMFPL--PQQRRLYIYFNQQLIRLAKRLTIRQQSMATAQVYMKRFYSK 82
Query: 117 WSVMEHHPKNIMLTCVYAACKIEEN--HV------SAEELGKGISQDHQMILNYEMIVYQ 168
+ +P ++ T +Y ACKIEE+ H+ + + G ++ D + E +
Sbjct: 83 VEIRRTNPYLVIATAIYLACKIEESPQHIRLIVTEARQMWGDLVAIDTSKLGECEFFMIS 142
Query: 169 ALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFP 228
+ LIV+ PYR + N EL ++ D + A+ ++ +TD PLL+P
Sbjct: 143 EMRSQLIVFQPYRTITALRN-----------ELSLVDDEVQLARSVINDHFMTDLPLLYP 191
Query: 229 PGQVLSVIQLALAALRNSN 247
P + V L LR +N
Sbjct: 192 PHIIAMVAILLALVLRPNN 210
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K IL E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ ML L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K IL E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ ML L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K IL E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ ML L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K IL E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ ML L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K +L E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYKMNHVLECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ ML L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
Length = 253
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 71 KPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLT 130
+ +++E+ + +++ N + ++ ++ ATA+ Y +R Y + S+ E+ P+ + T
Sbjct: 30 RGISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPT 89
Query: 131 CVYAACKIEENHVSAEEL---GKGISQDHQM------ILNYEMIVYQALEFDLIVYPPYR 181
C+Y ACK EE+ V A+ L K + D + IL EM V +AL F L+V+ PYR
Sbjct: 90 CLYLACKAEESVVHAKLLVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYR 149
Query: 182 PLEGFIND 189
L F+ D
Sbjct: 150 SLPEFLQD 157
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 34/206 (16%)
Query: 63 NSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEH 122
+ E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+
Sbjct: 17 DKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI 76
Query: 123 HPKNIMLTCVYAACKIEE-NHVSAEELGKGISQ--------------DHQM--ILNYEMI 165
P + TCV+ A K+EE VS L + ++M IL E
Sbjct: 77 DPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRFSYASPKEFPYRMNHILECEFY 136
Query: 166 VYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPL 225
+ + ++ LIVY PYRPL ++ DM G+ +L L A V+ TD L
Sbjct: 137 LLELMDCCLIVYHPYRPLLQYVQDM--------GQEDVLLPL---AWRIVNDTYRTDLCL 185
Query: 226 LFPPGQVLSVIQLALAALRNSNKVQR 251
L+PP +ALA L + VQ+
Sbjct: 186 LYPP------FMIALACLHVACVVQQ 205
>sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3
SV=1
Length = 267
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 73 LNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCV 132
LN +E Q + +F+ N ++ + ++ ATA +YFKRFY + S+ P + TC+
Sbjct: 32 LNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCI 91
Query: 133 YAACKIEENHVSAEELGKGISQDH-----------------QMILNYEMIVYQALEFDLI 175
A K+EE V + I Q IL E + + L+ LI
Sbjct: 92 LLASKVEEFGVISNSRLISICQSAIKTKFSYAYTQEFPYRTNHILECEFYLLENLDCCLI 151
Query: 176 VYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQV-LS 234
VY PYRPL + DM G+ L L V+ + TD LL+PP Q+ ++
Sbjct: 152 VYQPYRPLLQLVQDM--------GQEDQLLTLSWRI---VNDSLRTDVCLLYPPYQIAIA 200
Query: 235 VIQLALAALRNSNKVQ 250
+Q+A L+ + Q
Sbjct: 201 CLQIACVILQKDSTKQ 216
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2
Length = 253
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 69 RPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIM 128
+ + ++I++ + ++ N + ++ ++ ATA+ Y +R Y++ S++E P+ +
Sbjct: 28 KERGISIDDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVA 87
Query: 129 LTCVYAACKIEENHVSAEELGKGISQ---------DHQMILNYEMIVYQALEFDLIVYPP 179
LTC+Y A K EE+ V A L I + + + IL EM V +AL++ L+V+ P
Sbjct: 88 LTCLYLASKAEESIVQARNLVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHP 147
Query: 180 YRPLEGFIND 189
YR L F+ D
Sbjct: 148 YRSLSEFLQD 157
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE +++F+ N ++ + ++ ATA +YFKRFY ++S+ P
Sbjct: 24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVY 167
+ TCV+ A K+EE V + K IL E +
Sbjct: 84 VLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRFSYAFPKEFPYRMNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ ++ LIVY PYRPL ++ DM G+ +L L A V+ TD LL+
Sbjct: 144 ELMDCCLIVYHPYRPLLQYVQDM--------GQEDVLLPL---AWRIVNDTYRTDLCLLY 192
Query: 228 PPGQVLSVIQLALAALRNSNKVQR 251
PP +ALA L + VQ+
Sbjct: 193 PP------FMIALACLHVACVVQQ 210
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2
SV=1
Length = 257
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 100 NKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL----GKGISQD 155
++ ATA+ YF+R Y + S+ E+ P+ + TC+Y A K+EE+ V A L K + D
Sbjct: 59 QRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFYIKKMCASD 118
Query: 156 HQM------ILNYEMIVYQALEFDLIVYPPYRPLEGFIND--MEDFCQVKNG 199
+ IL EM + +AL++ L+VY PYRPL + D + D Q G
Sbjct: 119 EKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITDLTQFAWG 170
>sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1
Length = 267
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ LN +E Q + +F+ N ++ + ++ ATA +YFKRFY + S+ P
Sbjct: 24 ERQHDLLALNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAEELGKGISQDH-----------------QMILNYEMIVY 167
+ TC+ A K+EE V + I Q IL E +
Sbjct: 84 LLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ L+ LIVY PYRPL + DM G+ L L V+ + TD LL+
Sbjct: 144 ENLDCCLIVYQPYRPLLQLVQDM--------GQEDQLLTLSWRI---VNDSLRTDVCLLY 192
Query: 228 PPGQV-LSVIQLALAALR 244
PP Q+ ++ +Q+A L+
Sbjct: 193 PPYQIAIACLQIACVILQ 210
>sp|Q4P101|SSN8_USTMA RNA polymerase II holoenzyme cyclin-like subunit OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SSN8 PE=3 SV=1
Length = 393
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 77 EEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAAC 136
E ++ VF+ N L +C ++ A+A ++F+RF+ + S P + TCVY A
Sbjct: 36 ECAALGVFFSNLLSLICKRLNLRQRVTASANVFFRRFFAKNSYSALDPFLVCATCVYVAA 95
Query: 137 KIEENHV-----------SAEELG-KGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLE 184
K+EE+ + S E G +G+ DH + E + + +EFD++++ YR L
Sbjct: 96 KVEESPIHIKSAVAEATRSFTEHGFRGMPTDHSSLAEMEFYLLEEMEFDMVLFHSYRSLI 155
Query: 185 GFINDMEDFCQVKNG 199
D V +G
Sbjct: 156 VMFEDYGSGSAVGSG 170
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 77 EEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAAC 136
E + +R Y ++ + +A + +TA++YFKRFYL+ S ++ P+ + +TC+Y +
Sbjct: 36 ELKKLRTHYCFVIQNLGNALKLRQRAISTAIVYFKRFYLKNSFVDCEPRLVAVTCLYLSS 95
Query: 137 KIEENHVSAEELGKGISQ-DHQM------ILNYEMIVYQALEFDLIVYPPYRPLEGFIND 189
K+EE A++ + + DH IL E V + L+F LI+Y PY+ L ++
Sbjct: 96 KVEECITQAKKCAAKMKEIDHSFNYLMNDILECEFFVLEELDFCLIIYHPYKSLPFYLQS 155
Query: 190 MEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQV-LSVIQLALAALRNSNK 248
+ ++++ + V+ TD LL+PP V L I L L+ K
Sbjct: 156 S----GLDPASIEIIWGI-------VNDSYRTDVCLLYPPFVVGLGCILLGSYLLKKDIK 204
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 29/202 (14%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L EE Q + +F+ N ++ + ++ ATA +YFKRFY + S+ P
Sbjct: 24 ERQHDLKNLTEEEYQKIFMFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAEE---------LGKGISQDHQM--------ILNYEMIVY 167
+ TC+ A K+EE V + + S +Q IL E +
Sbjct: 84 LLLAPTCILLASKVEEFGVISNSRLITTCQTVIKNKFSYAYQQEFPYRTNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ L+ LIVY PYRPL I D+ G+ L L T +L ++ + TD LL+
Sbjct: 144 ENLDCCLIVYQPYRPLLQLIQDI--------GQEDQLLTL--TWRL-INDSLRTDVSLLY 192
Query: 228 PPGQV-LSVIQLALAALRNSNK 248
PP Q+ + +Q+A L+ K
Sbjct: 193 PPYQIAIGCLQIACVILQKELK 214
>sp|Q9TYP2|CCNC_CAEEL Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=3 SV=2
Length = 302
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 71 KPLNIEEEQSMRVFYENKLREVCS---------AFYFPNKIQATALLYFKRFYLQWSVME 121
K N EE + +F+ N + V + ++ ATA++YFKRFYL+ S +
Sbjct: 30 KIYNEEEYNRLNIFWANFITAVATEGAHSQANVGCKLRQQVIATAIIYFKRFYLRQSFRD 89
Query: 122 HHPKNIMLTCVYAACKIEENHV---------SAEELGK--GI-----SQDHQMILNYEMI 165
P + T ++ ACK+EE+ +A L K G+ S + ++ + E I
Sbjct: 90 MCPFLVASTALFLACKVEEHTTLSVSSFLKNTAIVLPKRWGVTFETTSTKNGVVYDSEFI 149
Query: 166 VYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKI----MLT 221
+ + L+ L+V+ RP+ + D++ F Q Q +KDL E + + K+ +
Sbjct: 150 LVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIANQPIKDL-EAIEAQCQKVANDSLRC 208
Query: 222 DAPLLFPPGQV-LSVIQLAL 240
D L+FPP + LS I +A+
Sbjct: 209 DVSLIFPPHVIGLSSIMVAM 228
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 29/202 (14%)
Query: 65 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHP 124
E+ K L+ EE Q + +F+ N ++ + ++ ATA +YFKRFY + S+ P
Sbjct: 24 ERQHDLKTLSEEEYQKLFMFFANIIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDP 83
Query: 125 KNIMLTCVYAACKIEENHVSAEE---------LGKGISQDHQM--------ILNYEMIVY 167
+ TC+ + K+EE V + + S +Q IL E +
Sbjct: 84 LLLAPTCILLSSKVEEFGVISNSRLITTCQTVIKNKFSYAYQQEFPYRTNHILECEFYLL 143
Query: 168 QALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLF 227
+ L+ LIVY PYRPL + D+ G+ + L L T +L ++ + TD LL+
Sbjct: 144 ENLDCCLIVYQPYRPLLQLMQDI--------GQEEQLLTL--TWRL-INDSLRTDVSLLY 192
Query: 228 PPGQV-LSVIQLALAALRNSNK 248
PP Q+ + +Q+A L+ K
Sbjct: 193 PPYQIAIGCLQIACVILQKELK 214
>sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=SSN8 PE=3 SV=1
Length = 363
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 60/251 (23%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A+F ST R NW+FT +EL A+ R+ ++ + T YP P
Sbjct: 3 ANFWESTQRRNWLFTKEEL-----AARRQQLENEDPSLVTM----------YPLP----- 42
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
E + + ++ ++ + + ATA +Y KRFY + +
Sbjct: 43 ---------------EWRHLYNYFNYQMLRLAKNLSIRQQAIATAQVYMKRFYTRVEIRS 87
Query: 122 HHPKNIMLTCVYAACKIEE-----NHVSAEELGKGI------SQDHQMILNYEMIVYQAL 170
+P +++T VY ACK+EE +VS E K + S + I E + +
Sbjct: 88 TNPTLVLVTAVYLACKMEEMPLHIRNVSLE--AKKVWPMETPSLEIAKIGECEFWLISEM 145
Query: 171 EFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPG 230
LIV+ PYR L D Q+ D H A ++ +TD PLL+ P
Sbjct: 146 SAQLIVHQPYRTLTALQQD-----------FQLANDDHVLAVSFLNDHFMTDLPLLYAPH 194
Query: 231 QV-LSVIQLAL 240
+ L+ I LAL
Sbjct: 195 TIALAAIMLAL 205
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 68 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
SR +++++E +R Y L+++ P ATA+++ RF+ + S ++ + I
Sbjct: 46 SRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTI 105
Query: 128 MLTCVYAACKIEEN--------HVSAEELGK---GISQ----------DHQMILNYEMIV 166
C++ A K+EE VS E + K G SQ ++ILN E IV
Sbjct: 106 ATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQKEVYEQQKELILNGEKIV 165
Query: 167 YQALEFDLIVYPPYRPL 183
L FDL VY PY+PL
Sbjct: 166 LSTLGFDLNVYHPYKPL 182
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W+FT EL A+ R ++ E ++ SF P+ ++
Sbjct: 3 ANYWESTQRKHWLFTKDEL-----AAMRAKLEAEEP--------NLVASFPLPQLRH--- 46
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+ +++ ++ + + ATA +Y KRFY + +
Sbjct: 47 -------------------LNIYFNQQINRLGKRMGLRQQALATAQVYIKRFYTKVEIRR 87
Query: 122 HHPKNIMLTCVYAACKIEE--NHVS--AEELGKGISQDHQ------MILNYEMIVYQALE 171
+P ++++T +Y ACK+EE H+ A E D Q I E + +
Sbjct: 88 TNPHHVLVTALYLACKMEECPQHIRLMANEARGFWPTDFQSQTEVARIGECEFYLISEMS 147
Query: 172 FDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQ 231
LIV+ PYR L GEL + ++ A ++ +TD PLL PP
Sbjct: 148 SHLIVHSPYRTLTSL-----------QGELGLAQEDVNLAWSVINDHYMTDLPLLHPPHV 196
Query: 232 V-LSVIQLAL 240
+ L+ I LAL
Sbjct: 197 IALTAILLAL 206
>sp|Q6BYF8|SSN8_DEBHA RNA polymerase II holoenzyme cyclin-like subunit OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SSN8 PE=3 SV=2
Length = 345
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 53/243 (21%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
ADF +S+ R W T L+E +RR + LEK +M + F P
Sbjct: 3 ADFWSSSQRNRWQLTRHSLLE-----SRRKLLLLEK----KM---IQNGFIKDYP----- 45
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
N+E + + R++ N L ++ ATA +Y RF ++ S+ E
Sbjct: 46 ------------NVEYDANTRIYLHNLLIKLGRRLNVRQIALATAEIYMSRFLIKVSLKE 93
Query: 122 HHPKNIMLTCVYAACKIEE--NHV-----SAEELG-KGISQDHQMILNYEMIVYQALEFD 173
+ ++ TC+YAACKIEE H+ A L + I QD + +E + + ++
Sbjct: 94 INVYLLVTTCLYAACKIEECPQHIRLITSEARNLWPEYIPQDVTKLAEFEFYLIEEMDSF 153
Query: 174 LIVYPPYRPL---EGFINDMEDFC----QVKNGELQMLKDLHETAKLEVDKIMLTDAPLL 226
L+++ PYR L ++N E+F + + ELQ L ++ +TD LL
Sbjct: 154 LVLHHPYRSLLQIRDYLN--ENFALYGFSLSDDELQNSWSL-------INDSYITDLHLL 204
Query: 227 FPP 229
PP
Sbjct: 205 LPP 207
>sp|Q2GVK1|SSN8_CHAGB RNA polymerase II holoenzyme cyclin-like subunit OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=SSN8 PE=3 SV=2
Length = 364
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 55/237 (23%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W FT Q+L A+ R+ + E G QM +P PQ
Sbjct: 3 ANYWESTQRKHWQFTKQDL-----AAIRQRLDD-EDPGLVQM---------FPLPQ---- 43
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+ + +++ ++ + ++ ATA +Y KRFY + ++ +
Sbjct: 44 ----------------LRHLNIYFNQQINRLSKRIGLRQQVMATAQVYLKRFYTRIAIRQ 87
Query: 122 HHPKNIMLTCVYAACKIEE--NHV-----SAEELGKGISQDHQ--MILNYEMIVYQALEF 172
+P ++ T +Y ACK+EE H+ A L H + E + +
Sbjct: 88 TNPYLVLTTVLYLACKMEECPQHIRMMTQEARSLWPSDLHGHDPARVGECEFSLISEMHS 147
Query: 173 DLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPP 229
+LIV+ PYR L G E + +D A ++ +TD PLL PP
Sbjct: 148 NLIVHQPYRSLLGV-----------QDEFGLTQDEMSLAWTVINDHYMTDLPLLHPP 193
>sp|Q0CV29|SSN8_ASPTN RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1
Length = 301
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 55/250 (22%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W+FT + L A R + +K +Q +P P
Sbjct: 3 ANYWVSTQRRHWLFTRERL-----ADIREGFKERDKVAHSQ----------FPLP----- 42
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+++ + +++ +L ++ + ATA +Y KRFY + +
Sbjct: 43 ---------------DQRLLNIYFSQQLIKLGKRTTTRQQALATAQVYIKRFYTKNDIRH 87
Query: 122 HHPKNIMLTCVYAACKIEE-----NHVSAEELG---KGISQDHQMILNYEMIVYQALEFD 173
+P ++ T Y ACK+EE V AE + I+ D + E + +
Sbjct: 88 TNPYLVITTAFYLACKMEECPQHIRFVVAEARSFWPEFIAPDVSKLGECEFALISEMNSQ 147
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233
LIV+ PYR L ELQ+ D A ++ LTD PLL+PP V+
Sbjct: 148 LIVHHPYRTLSEL-----------TPELQLTSDEVALAWSVINDHYLTDLPLLYPP-HVI 195
Query: 234 SVIQLALAAL 243
+V+ + +A +
Sbjct: 196 AVMAIIVAVV 205
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 68 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
SR +++++E +R Y L+++ P ATA+++ RFYL+ S ++ + I
Sbjct: 49 SRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTI 108
Query: 128 MLTCVYAACKIEEN---------------HVSAEELGKGISQ----DHQ--MILNYEMIV 166
C++ A K+EE H G+ I Q D Q +IL E +V
Sbjct: 109 ATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLAERVV 168
Query: 167 YQALEFDLIVYPPYRPL 183
L FDL V+ PY+PL
Sbjct: 169 LATLGFDLNVHHPYKPL 185
>sp|Q2UDB2|SSN8_ASPOR RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2
Length = 301
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 55/250 (22%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W+FT + L D+ SF +
Sbjct: 3 ANYWASTQRRHWLFTKERL------------------------ADIRESF-------RER 31
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
D + P P +++ + +++ +L ++ + ATA +Y KRFY + +
Sbjct: 32 DKAAHSQFPLP----DQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRH 87
Query: 122 HHPKNIMLTCVYAACKIEE-----NHVSAEELG---KGISQDHQMILNYEMIVYQALEFD 173
+P ++ T Y ACK+EE V AE + I+ D + E + +
Sbjct: 88 TNPYLVVTTAFYLACKMEECPQHIRFVVAEARNFWPEFIAPDVSKLGECEFALISEMNSQ 147
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233
LIV+ PYR L EL + D A ++ LTD PLL+PP V+
Sbjct: 148 LIVHHPYRTLSEL-----------QPELSLTSDEVALAWSVINDHYLTDLPLLYPP-HVI 195
Query: 234 SVIQLALAAL 243
+V+ + +A +
Sbjct: 196 AVMAIIVAVV 205
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 68 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
SR +++++E +R Y L+++ P ATA+++ RF+++ S + + I
Sbjct: 46 SRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTI 105
Query: 128 MLTCVYAACKIEE-------------------NHVSAEELGKG--ISQDHQMILNYEMIV 166
C++ A K+EE + +A+++ + Q ++ILN E IV
Sbjct: 106 ATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIV 165
Query: 167 YQALEFDLIVYPPYRPL 183
L FD VY PY+PL
Sbjct: 166 LSTLGFDFNVYHPYKPL 182
>sp|Q1EAW8|SSN8_COCIM RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides
immitis (strain RS) GN=SSN8 PE=3 SV=2
Length = 303
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 55/284 (19%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
AD+ +ST +W+F +EL E R+ + E+ Q YP P
Sbjct: 3 ADYWSSTQHQSWLFGREELAEA-----RKVLGDAERPFIQQ----------YPLP----- 42
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+ + ++ +L ++ + ATA +Y KRFY + +
Sbjct: 43 ---------------DLRLFNIYVNQQLIKLAKRLNVRQQALATAQVYVKRFYTKVEIRR 87
Query: 122 HHPKNIMLTCVYAACKIEE-----NHVSAEELG---KGISQDHQMILNYEMIVYQALEFD 173
+P ++ T Y ACKIEE V E G + I+ D I E + +
Sbjct: 88 TNPYLVLTTAFYLACKIEECPQHIRLVLGEARGLWPEFIAPDSAKIGECEFWLISEMNSQ 147
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233
LIV+ PYR L ++++ + + + E+ + + ++ LTD LL PP V+
Sbjct: 148 LIVHHPYRTL----SELQSYLSLTSDEIALAWSV-------INDHYLTDLLLLHPP-HVI 195
Query: 234 SVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTE 277
SV+ + +A + N+ Q V ++ R S +I+S +
Sbjct: 196 SVMAIFIAVVFKPNQHQVVSISGGSSATGALRDGSTNILSAFND 239
>sp|A1C7R6|SSN8_ASPCL RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ssn8 PE=3 SV=2
Length = 302
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 54/236 (22%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W+FT + L E R A + K +Q +P P
Sbjct: 3 ANYWASTQRRHWLFTRERLAEI-----REAFRERHKLAHSQ----------FPLP----- 42
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+++ + +++ +L ++ + ATA +Y KRFY + +
Sbjct: 43 ---------------DQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRH 87
Query: 122 HHPKNIMLTCVYAACKIEE--NHV-----SAEELG-KGISQDHQMILNYEMIVYQALEFD 173
+P ++ T Y ACK+EE H+ A L + I+ D + E + +
Sbjct: 88 TNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPEFITPDVSKLGECEFSLISEMNSQ 147
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPP 229
LIV+ PYR L G EL + D A ++ LTD PLL+ P
Sbjct: 148 LIVHHPYRTLSGL-----------QSELSLTSDEVALAWSVINDHYLTDLPLLYSP 192
>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like subunit OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=SSN8 PE=3 SV=2
Length = 346
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 132/338 (39%), Gaps = 71/338 (21%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
ADF S+ R W + Q L+E RR + LE+ + YP
Sbjct: 3 ADFWCSSQRNKWQLSRQSLLEA-----RRKVLLLERKMIQNGLIK-----DYP------- 45
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
NI + +MR++ N L ++ ATA +Y RF + S+ E
Sbjct: 46 ------------NIHYDFNMRIYLHNLLIKLGRRLNIRQVALATAEIYLNRFLTRVSLKE 93
Query: 122 HHPKNIMLTCVYAACKIEE--NHV-----SAEELG-KGISQDHQMILNYEMIVYQALEFD 173
+ ++ TC+Y ACKIEE H+ A L + I D + +E + + ++
Sbjct: 94 INVYLLVTTCLYVACKIEECPQHIRLIISEARNLWPEYIPHDVTKLAEFEFYLIEEMDSY 153
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNG--ELQMLKDLHETAKLEVDKIMLTDAPLLFPPG- 230
L ++ PY+ L + DF + + D + A V+ +TD LL PP
Sbjct: 154 LFLHHPYKSLI----QIRDFLNENSAVFGFTLTDDELQNAWSLVNDSYITDLHLLLPPHI 209
Query: 231 ------QVLSVIQLALAALR-NSNKVQRVVNYESYLSSILSRQNSGHII----------- 272
+ V++ L+A+R NS+ V S + + QNS HI
Sbjct: 210 IAVASIYITIVLKKNLSAIRVNSSAVNSNGGPNSMMFNRNPDQNSMHIDDLMILANPSTP 269
Query: 273 -SDLTENLDTIDSWVMKY--------KFPSEKDMKHIN 301
SDL NL+ + MK KF + D HIN
Sbjct: 270 GSDLVNNLERTNFHDMKLDEETIKINKFMNFLDHSHIN 307
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2
Length = 630
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 65 EKHSRPKPLNIEE--EQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEH 122
EK S + I E E +R Y + +R+V P ATA+++ RFYL S+ ++
Sbjct: 26 EKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKN 85
Query: 123 HPKNIMLTCVYAACKIEENHVSAEEL-----GKGISQD-------HQ---------MILN 161
+ I C++ A K+E+ +++ G +D HQ +IL
Sbjct: 86 GWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILT 145
Query: 162 YEMIVYQALEFDLIVYPPYRPL 183
E +V + FD + PYRPL
Sbjct: 146 GERLVLTTVRFDFNIQHPYRPL 167
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2
Length = 460
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 24/151 (15%)
Query: 51 FSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYF 110
FS E + N+ SR ++++ E +R Y L + P ATA+ +
Sbjct: 33 FSREEIERNSP------SRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFC 86
Query: 111 KRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL---------GKGIS-------- 153
RF+L+ S ++ + I C+ A K+EE V+ E++ K ++
Sbjct: 87 HRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQRKEVY 146
Query: 154 -QDHQMILNYEMIVYQALEFDLIVYPPYRPL 183
Q +++L E +V L FDL + PY+PL
Sbjct: 147 DQQKELVLIGEELVLSTLNFDLCISHPYKPL 177
>sp|Q4WZT9|SSN8_ASPFU RNA polymerase II holoenzyme cyclin-like subunit OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=ssn8 PE=3 SV=1
Length = 302
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 55/254 (21%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A++ ST R +W+FT ++L E R + +K +Q +P P
Sbjct: 3 ANYWASTQRRHWLFTREKLAEI-----REIFREGDKVAHSQ----------FPLP----- 42
Query: 62 DNSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME 121
+++ + +++ +L ++ + ATA +Y KRFY + +
Sbjct: 43 ---------------DQRLLNIYFSQQLIKLGKRMSTRQQALATAQVYIKRFYTKNEIRH 87
Query: 122 HHPKNIMLTCVYAACKIEE--NHV-----SAEELG-KGISQDHQMILNYEMIVYQALEFD 173
+P ++ T Y ACK+EE H+ A L + I+ D + E + +
Sbjct: 88 TNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPEFITPDVSKLGECEFSLISEMNSQ 147
Query: 174 LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233
LIV+ PYR L EL + D A ++ LTD PLL+ P V+
Sbjct: 148 LIVHHPYRTLSEL-----------QPELSLTSDEVALAWSVINDHYLTDLPLLYAP-HVI 195
Query: 234 SVIQLALAALRNSN 247
+V+ + +A + N
Sbjct: 196 AVMAIIVAVVFKPN 209
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 59 NAKDNSEKHS--RPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQ 116
N ++ EK S R +N++EE R Y + L+E+ P K ATA++ +RF+ +
Sbjct: 9 NTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTR 68
Query: 117 WSVMEHHPKNIMLTCVYAACKIEENHVSA--------------EELGKGISQDHQMILNY 162
S+ ++ PK + + C++ A K+E + A E L + +L
Sbjct: 69 QSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPLRDVFERLKMTVLTG 128
Query: 163 EMIVYQALEFDLIVYPPYR 181
E +V LE DL + PY+
Sbjct: 129 EKLVLSTLECDLEIEHPYK 147
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 131/316 (41%), Gaps = 43/316 (13%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAK 61
A + S+ R W ++ + L A R+ + LE Q+ YP+ N
Sbjct: 3 ASYWDSSQRNKWQYSRESL-----ARTRQKLWMLE----CQL---------YPQGTNILM 44
Query: 62 DNSEKHSRPKPLNI---------EEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKR 112
+ K ++P NI + + ++R++ + ++ ATA +Y R
Sbjct: 45 EGGGKDAQPVTKNIPITHRDLHYDRDYNLRIYCYFLIMKLGRRLNVRQYALATAHVYLAR 104
Query: 113 FYLQWSVMEHHPKNIMLTCVYAACKIEE--NHV-----SAEELG-KGISQDHQMILNYEM 164
F L+ S+ E + ++ TC+Y ACK+EE H+ A L + + D + +E
Sbjct: 105 FCLKASIREVNLYLLVTTCIYLACKVEECPQHIRTLVNEARSLWPEFVPPDPTKVTEFEF 164
Query: 165 IVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAP 224
+ + L+ +IV+ PYR +E + + + DL + L ++ +TD
Sbjct: 165 YLIEELQSYMIVHYPYRAMEQIAAALR---RPPYNLVLSPDDLQNSWSL-INDSYITDVH 220
Query: 225 LLFPPGQVLSVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTI-D 283
LL+PP + LR++ + + E++ + Q H + D ++ T+ D
Sbjct: 221 LLYPPHVIAMACLFITVCLRSAAGARDL--QETFNRFMADSQVDLHEVMDTIQDFITLYD 278
Query: 284 SWVMKYKFPSEKDMKH 299
W KY P K + H
Sbjct: 279 HWD-KYNEPWIKFLLH 293
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 68 SRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNI 127
SR +++++E +R Y L+++ P ATA+++ RF+L+ S ++ + I
Sbjct: 50 SRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTI 109
Query: 128 MLTCVYAACKIEENH--------VSAEELGKGIS-------------QDHQMILNYEMIV 166
C++ A K+EE +S E + K + Q ++IL E +V
Sbjct: 110 ATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKEVYEQQKELILLGERVV 169
Query: 167 YQALEFDLIVYPPYRPL 183
L FDL V+ PY+PL
Sbjct: 170 LVTLGFDLNVHHPYKPL 186
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 72 PLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTC 131
PL+ EE Q + N + V P ATA +YF RFYL++S+ +H + TC
Sbjct: 36 PLDQEEIQRSKGC--NFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATC 93
Query: 132 VYAACKIEE-------------------NHVSAEELGKGISQDHQMILNYEMIVYQALEF 172
++ A K+E+ ++V +E K + +IL E ++ +AL F
Sbjct: 94 IFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCF 153
Query: 173 DLIVYPPYRPLEGFI 187
D V PY + FI
Sbjct: 154 DFTVEHPYPYVLSFI 168
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 34/243 (13%)
Query: 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQ-MEVDVDGSFSYPEPQNNA 60
F TST R +W +T L A R+ + LE Q + + +D + N
Sbjct: 3 GSFWTSTQRHHWQYTKASL-----AKERQKLWLLECQLFPQGLNIVMDS-------KQNG 50
Query: 61 KDNSEKHSRP---KPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQW 117
+ S + P + L+ +++ ++R++ + ++ ATA +Y RF ++
Sbjct: 51 IEQSITKNIPITHRDLHYDKDYNLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLIKA 110
Query: 118 SVMEHHPKNIMLTCVYAACKIEENHVSAEEL--------GKGISQDHQMILNYEMIVYQA 169
SV E + ++ TCVY ACK+EE L + I D + +E + +
Sbjct: 111 SVREINLYMLVTTCVYLACKVEECPQYIRTLVSEARTLWPEFIPPDPTKVTEFEFYLLEE 170
Query: 170 LEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQML---KDLHETAKLEVDKIMLTDAPLL 226
LE LIV+ PY+ L+ + + K Q+ DL L ++ + D LL
Sbjct: 171 LESYLIVHHPYQSLKQIVQVL------KQPPFQITLSSDDLQNCWSL-INDSYINDVHLL 223
Query: 227 FPP 229
+PP
Sbjct: 224 YPP 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,765,215
Number of Sequences: 539616
Number of extensions: 5048760
Number of successful extensions: 15520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 15334
Number of HSP's gapped (non-prelim): 138
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)