Query 038028
Match_columns 337
No_of_seqs 265 out of 1267
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jkw_A Cyclin H; cell cycle, c 100.0 2.3E-59 7.8E-64 449.3 28.7 284 4-322 2-295 (323)
2 3rgf_B Cyclin-C; protein kinas 100.0 5.4E-46 1.8E-50 350.7 20.2 237 2-304 5-259 (285)
3 1zp2_A RNA polymerase II holoe 100.0 3.4E-39 1.2E-43 295.9 17.3 213 4-290 1-222 (235)
4 2ivx_A Cyclin-T2; transcriptio 100.0 9.4E-37 3.2E-41 282.9 18.4 166 69-251 18-202 (257)
5 2i53_A Cyclin K; cell cycle, t 100.0 1.3E-36 4.5E-41 281.8 13.9 169 70-251 29-210 (258)
6 2pk2_A Cyclin-T1, protein TAT; 100.0 6.8E-36 2.3E-40 289.9 10.6 166 69-251 25-209 (358)
7 1c9b_A General transcription f 100.0 8.1E-29 2.8E-33 222.5 16.9 152 83-251 6-157 (207)
8 3g33_B CCND3 protein; Ser/Thr 100.0 1E-28 3.5E-33 234.9 15.2 196 78-288 67-267 (306)
9 1g3n_C V-cyclin; cyclin-depend 100.0 1.8E-27 6.2E-32 220.7 18.3 198 79-291 48-251 (257)
10 2b9r_A Human cyclin B1; cell c 99.9 2.1E-27 7.1E-32 221.8 15.1 156 79-251 35-193 (269)
11 2f2c_A Cyclin homolog, V-cycli 99.9 3.3E-26 1.1E-30 211.8 19.4 197 79-290 49-250 (254)
12 2w96_A G1/S-specific cyclin-D1 99.9 1.9E-26 6.4E-31 215.5 16.9 159 79-250 54-215 (271)
13 2cch_B Cyclin A2, cyclin-A; co 99.9 3E-26 1E-30 212.9 14.4 157 79-251 36-196 (260)
14 1f5q_B Gamma herpesvirus cycli 99.9 5.8E-24 2E-28 196.9 16.9 199 77-291 44-245 (252)
15 1ais_B TFB TFIIB, protein (tra 99.9 9.2E-24 3.1E-28 188.4 15.0 156 78-251 6-163 (200)
16 1w98_B Cyclin E, G1/S-specific 99.9 2.8E-23 9.6E-28 195.3 17.9 160 79-248 47-214 (283)
17 3k7a_M Transcription initiatio 99.8 1.4E-21 4.8E-26 188.6 7.0 151 84-251 128-290 (345)
18 4bbr_M Transcription initiatio 99.6 2.3E-16 7.9E-21 152.0 9.7 151 84-251 128-290 (345)
19 1ais_B TFB TFIIB, protein (tra 98.2 3.8E-06 1.3E-10 74.0 9.3 89 86-174 109-197 (200)
20 1c9b_A General transcription f 97.9 3.3E-05 1.1E-09 68.3 9.2 87 86-172 103-189 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.6 0.00026 9E-09 65.9 10.3 103 86-189 78-184 (293)
22 3k7a_M Transcription initiatio 96.1 0.001 3.4E-08 63.6 0.0 74 86-159 236-309 (345)
23 4bbr_M Transcription initiatio 96.0 0.0012 4E-08 63.2 0.0 75 85-159 235-309 (345)
24 3rgf_B Cyclin-C; protein kinas 95.8 0.023 7.9E-07 52.5 7.9 80 87-168 159-238 (285)
25 1zp2_A RNA polymerase II holoe 94.9 0.051 1.7E-06 48.6 7.1 55 87-141 136-190 (235)
26 2i53_A Cyclin K; cell cycle, t 94.3 0.13 4.6E-06 46.2 8.3 85 87-171 153-250 (258)
27 2ivx_A Cyclin-T2; transcriptio 93.6 0.27 9.3E-06 44.2 9.0 57 87-143 148-205 (257)
28 2cch_B Cyclin A2, cyclin-A; co 92.3 0.2 7E-06 45.3 6.1 81 87-167 141-223 (260)
29 2b9r_A Human cyclin B1; cell c 92.2 0.14 4.8E-06 46.7 5.0 56 87-142 140-195 (269)
30 2f2c_A Cyclin homolog, V-cycli 91.2 0.6 2.1E-05 42.0 8.0 79 88-166 155-242 (254)
31 2pk2_A Cyclin-T1, protein TAT; 90.4 0.35 1.2E-05 46.1 5.9 83 87-169 155-244 (358)
32 1g3n_C V-cyclin; cyclin-depend 88.3 1 3.5E-05 40.5 7.1 55 87-141 153-211 (257)
33 1jkw_A Cyclin H; cell cycle, c 88.2 0.66 2.3E-05 43.5 6.0 46 97-142 182-227 (323)
34 3g33_B CCND3 protein; Ser/Thr 86.1 1.6 5.5E-05 40.5 7.2 84 88-171 174-266 (306)
35 2w96_A G1/S-specific cyclin-D1 85.9 1.5 5.1E-05 39.7 6.8 87 87-173 159-258 (271)
36 3m03_A ORC6, origin recognitio 85.0 4.9 0.00017 30.9 8.2 60 89-149 6-70 (95)
37 4ell_A Retinoblastoma-associat 84.5 2.7 9.1E-05 40.8 8.1 67 85-152 282-352 (411)
38 2r7g_A PP110, retinoblastoma-a 80.2 3.9 0.00013 38.8 7.3 68 85-152 218-288 (347)
39 3h4c_A Transcription factor TF 76.7 6.4 0.00022 34.6 6.9 64 85-148 15-81 (260)
40 2qdj_A Retinoblastoma-associat 74.0 7.7 0.00026 36.1 7.3 61 89-149 6-70 (304)
41 4elj_A Retinoblastoma-associat 71.1 9.8 0.00034 39.0 7.8 69 84-152 526-597 (656)
42 1w98_B Cyclin E, G1/S-specific 68.6 19 0.00066 32.5 8.7 29 109-137 186-214 (283)
43 1wi3_A DNA-binding protein SAT 47.9 54 0.0018 23.6 6.1 45 72-119 13-67 (71)
44 1f5q_B Gamma herpesvirus cycli 43.9 64 0.0022 28.6 7.5 49 88-136 152-204 (252)
45 4elj_A Retinoblastoma-associat 40.0 63 0.0021 33.1 7.5 61 89-149 8-72 (656)
No 1
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=2.3e-59 Score=449.28 Aligned_cols=284 Identities=34% Similarity=0.569 Sum_probs=236.7
Q ss_pred CCcccccccccCCh-HHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 038028 4 FQTSTHRANWIFTP-QELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMR 82 (337)
Q Consensus 4 y~~STQ~r~W~Ft~-e~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eeE~~l~ 82 (337)
||+|||+++|+||+ ++|.+.|.++|+++++.+.... .| .++..++||+++|..+|
T Consensus 2 y~~Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~-------------~~-----------~~~~~~~lt~eeE~~lr 57 (323)
T 1jkw_A 2 YHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANG-------------KV-----------LPNDPVFLEPHEEMTLC 57 (323)
T ss_dssp ---------CCCSCHHHHHHHHHHHHHHHHHHHHHTS-------------SS-----------CTTCTTSCCHHHHHHHH
T ss_pred CCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhcc-------------CC-----------CccccCCCCHHHHHHHH
Confidence 99999999999996 7899999999999998874210 11 12577899999999999
Q ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccc------
Q 038028 83 VFYENKLREVCSAFY--FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQ------ 154 (337)
Q Consensus 83 ~~~~~~I~~~~~~l~--lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~------ 154 (337)
.+|+.||+++|..|+ ||+.|++||++||||||+++|++++++++|++||||||||+||+++++++|+..+..
T Consensus 58 ~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 58 KYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999876643
Q ss_pred -cHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCc
Q 038028 155 -DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233 (337)
Q Consensus 155 -~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~ 233 (337)
++++|+.+|+.||++|+|+|.++|||++|.+|+.+++..+.. .+....+.+.||.+++++++||+++.|+|++
T Consensus 138 ~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~----~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~-- 211 (323)
T 1jkw_A 138 KALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI----LENPEILRKTADDFLNRIALTDAYLLYTPSQ-- 211 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTT----CCCHHHHHHHHHHHHHHHTTSTHHHHSCHHH--
T ss_pred HHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhccHHHcCCHHH--
Confidence 378999999999999999999999999999999988654321 1123567889999999999999999999999
Q ss_pred chHHHHHHHHHHHhccccccchHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCC
Q 038028 234 SVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKFPSEKDMKHINRKLKSCWGHGSH 313 (337)
Q Consensus 234 ~~~~IAlAal~~A~~~~~~~~~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~~~~~~~~~~i~~kL~~c~np~~~ 313 (337)
||+||+|+|+..++ .++..|+..+|....++..+++|.++++.|..++..+..|+.++++.|++||++|+||+++
T Consensus 212 ----IAaAai~lA~~~~~-~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL~~c~~p~~~ 286 (323)
T 1jkw_A 212 ----IALTAILSSASRAG-ITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELA 286 (323)
T ss_dssp ----HHHHHHHHHHHHHS-CCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHSCSC
T ss_pred ----HHHHHHHHHHHHcC-CChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhChhcC
Confidence 99999999998654 4456799988765445667899999999999999999999999999999999999999999
Q ss_pred ChhhhHhhh
Q 038028 314 DVSKKREKK 322 (337)
Q Consensus 314 ~~~~~~~~~ 322 (337)
|.++.++||
T Consensus 287 ~~~~~~~~~ 295 (323)
T 1jkw_A 287 LNVITKKRK 295 (323)
T ss_dssp C--------
T ss_pred CcHHHHHHh
Confidence 998877754
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-46 Score=350.67 Aligned_cols=237 Identities=30% Similarity=0.445 Sum_probs=201.8
Q ss_pred CCCCcccccccccCChHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 038028 2 ADFQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSM 81 (337)
Q Consensus 2 ~~y~~STQ~r~W~Ft~e~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eeE~~l 81 (337)
+|||+|||+++|.||++||.+.|. .+.+++|+++|..+
T Consensus 5 ~~~w~Ss~~~~Wlft~~el~~~~~------------------------------------------~~~~~l~~~~e~~~ 42 (285)
T 3rgf_B 5 GNFWQSSHYLQWILDKQDLLKERQ------------------------------------------KDLKFLSEEEYWKL 42 (285)
T ss_dssp TCGGGSHHHHHHSCCHHHHHHHHT------------------------------------------TGGGTSCHHHHHHH
T ss_pred chhhcccccCCcCcCHHHHHHhhh------------------------------------------cccccCCHHHHHHH
Confidence 499999999999999999976431 13457899999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCC-CHHHhhcc---------
Q 038028 82 RVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHV-SAEELGKG--------- 151 (337)
Q Consensus 82 ~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~-sl~~~~~~--------- 151 (337)
|.++++||.++|.+|+||+.|++||++||||||.+++++++++++|++||||||||+||.++ ++++|+..
T Consensus 43 R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 43 QIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999999999997 68887642
Q ss_pred -------ccccHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcc
Q 038028 152 -------ISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAP 224 (337)
Q Consensus 152 -------~~~~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~ 224 (337)
+..++++|+.+|+.||++|+|+|.++|||++|.+|+..++. ...+.+.||.++++++.|+++
T Consensus 123 ~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~-----------~~~~~~~A~~~l~~sl~t~~~ 191 (285)
T 3rgf_B 123 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ-----------EDMLLPLAWRIVNDTYRTDLC 191 (285)
T ss_dssp TTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTSSHH
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHccChh
Confidence 23468999999999999999999999999999999987631 246788999999999999999
Q ss_pred eecCCCCCcchHHHHHHHHHHHhccccccchHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 038028 225 LLFPPGQVLSVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKF-PSEKDMKHINRK 303 (337)
Q Consensus 225 l~y~Ps~~~~~~~IAlAal~~A~~~~~~~~~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~~-~~~~~~~~i~~k 303 (337)
+.|+|++ ||+||+|+|+..++ .+...|+.. | ....++|.+....|.+++..... ...+++..|.+|
T Consensus 192 l~~~Ps~------IAaAaiylA~~~~~-~~~~~W~~~-~-----~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k 258 (285)
T 3rgf_B 192 LLYPPFM------IALACLHVACVVQQ-KDARQWFAE-L-----SVDMEKILEIIRVILKLYEQWKNFDERKEMATILSK 258 (285)
T ss_dssp HHSCHHH------HHHHHHHHHHHHTT-CCCHHHHHT-S-----CSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hccCHHH------HHHHHHHHHHHHcC-CChhhHHHH-H-----CCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHh
Confidence 9999999 99999999998765 345678763 3 23457777888888888776543 334567777776
Q ss_pred H
Q 038028 304 L 304 (337)
Q Consensus 304 L 304 (337)
+
T Consensus 259 ~ 259 (285)
T 3rgf_B 259 M 259 (285)
T ss_dssp S
T ss_pred C
Confidence 5
No 3
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=295.87 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=173.0
Q ss_pred CCcccccccccCChHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 038028 4 FQTSTHRANWIFTPQELIEKYKASNRRAIQTLEKYGTTQMEVDVDGSFSYPEPQNNAKDNSEKHSRPKPLNIEEEQSMRV 83 (337)
Q Consensus 4 y~~STQ~r~W~Ft~e~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eeE~~l~~ 83 (337)
||+|||+++|.||++||.+. | +.. +++ |.
T Consensus 1 ~~~Ss~~~~w~ft~~~l~~~------------------------------~-------------~~~-----~~~---R~ 29 (235)
T 1zp2_A 1 YWASSQLTQLFLSTDLESLE------------------------------P-------------TCL-----SKD---TI 29 (235)
T ss_dssp -CCCGGGTGGGSCSSCTTSS------------------------------C-------------CCS-----CHH---HH
T ss_pred CCccCCCCCCccCHHHHHHC------------------------------C-------------cch-----hHH---HH
Confidence 89999999999999998420 0 011 122 99
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccc-cChHHHHHHHHHHHhhccCCCCCHHHhhccc--------cc
Q 038028 84 FYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVME-HHPKNIMLTCVYAACKIEENHVSAEELGKGI--------SQ 154 (337)
Q Consensus 84 ~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~-~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~--------~~ 154 (337)
++++||.++|..|+||+.|++||++||+|||.++++++ +++++|++||||||||+||+++++++|+... ..
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999997632 46
Q ss_pred cHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcc
Q 038028 155 DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLS 234 (337)
Q Consensus 155 ~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~ 234 (337)
++++|+.+|+.||++|+|++.++||+++|.+|+..++ ...++.+.||.++++++.+++++.|+|++
T Consensus 110 ~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~-----------~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~--- 175 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGI-----------INQKQLEFAWSIVNDSYASSLCLMAHPHQ--- 175 (235)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTS-----------SCHHHHHHHHHHHHHHTTTTGGGTSCHHH---
T ss_pred cHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHcCCchhccCHHH---
Confidence 7999999999999999999999999999999987531 12457789999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccccchHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcC
Q 038028 235 VIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYK 290 (337)
Q Consensus 235 ~~~IAlAal~~A~~~~~~~~~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~ 290 (337)
||+||+++|+...+. +...+... +. +...+.+.+..+.|.+++...+
T Consensus 176 ---IAaAai~lA~~~~~~-~~~~~~~~-~~----~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 176 ---LAYAALLISCCNDEN-TIPKLLDL-IK----STDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp ---HHHHHHHHHHTSCTT-HHHHHHHH-CC----HHHHHHHHHHHHHHHHHHTSSS
T ss_pred ---HHHHHHHHHHHhcCC-CCCCCcch-hh----cCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999987642 11122211 10 2334556666666666655433
No 4
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=9.4e-37 Score=282.94 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=150.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHh
Q 038028 69 RPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL 148 (337)
Q Consensus 69 ~~~~ls~eeE~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~ 148 (337)
+.+|+++++|..+|..+++||.++|.+|+||+.|.+||++||||||.++++.++++++|++||||||||+||.++++++|
T Consensus 18 ~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~ 97 (257)
T 2ivx_A 18 RRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHV 97 (257)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc------------------cccHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHH
Q 038028 149 GKGI------------------SQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHET 210 (337)
Q Consensus 149 ~~~~------------------~~~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~ 210 (337)
+... ...+++|+.+|+.||++|+|+|.++|||++|..|+..++. ...+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~-----------~~~~~~~ 166 (257)
T 2ivx_A 98 IKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA-----------SKDLAQT 166 (257)
T ss_dssp HHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC-----------CHHHHHH
T ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC-----------CcHHHHH
Confidence 6422 1238999999999999999999999999999999877531 1457789
Q ss_pred HHHHHHHHH-hcCcceecCCCCCcchHHHHHHHHHHHhcccc
Q 038028 211 AKLEVDKIM-LTDAPLLFPPGQVLSVIQLALAALRNSNKVQR 251 (337)
Q Consensus 211 A~~~l~ds~-~Td~~l~y~Ps~~~~~~~IAlAal~~A~~~~~ 251 (337)
||.++++++ .+++++.|+|++ ||+||+++|+..++
T Consensus 167 A~~~~~~sl~~~~~~l~~~Ps~------IAaAai~lA~~~~~ 202 (257)
T 2ivx_A 167 SYFMATNSLHLTTFCLQYKPTV------IACVCIHLACKWSN 202 (257)
T ss_dssp HHHHHHHHHHHCCGGGTSCHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcccHHHcCCHHH------HHHHHHHHHHHHhC
Confidence 999999998 599999999999 99999999998654
No 5
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-36 Score=281.79 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=151.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhh
Q 038028 70 PKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELG 149 (337)
Q Consensus 70 ~~~ls~eeE~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~ 149 (337)
.+++++++|..+|..+++||.++|.+|++|+.|.++|++||||||.++++.++++++|++||||||||+||.++++++|+
T Consensus 29 ~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~ 108 (258)
T 2i53_A 29 LEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII 108 (258)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccc-------------ccHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHH
Q 038028 150 KGIS-------------QDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVD 216 (337)
Q Consensus 150 ~~~~-------------~~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ 216 (337)
.... ..+++|+.+|+.||++|+|++.++|||++|..|+..+. .. .+....+.+.||.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~----~~---~~~~~~~~~~A~~l~~ 181 (258)
T 2i53_A 109 KTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLK----GD---KNKIQKLVQMAWTFVN 181 (258)
T ss_dssp HHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBC----SC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhC----CC---cchHHHHHHHHHHHHH
Confidence 5311 13789999999999999999999999999999987652 11 1123468899999999
Q ss_pred HHHhcCcceecCCCCCcchHHHHHHHHHHHhcccc
Q 038028 217 KIMLTDAPLLFPPGQVLSVIQLALAALRNSNKVQR 251 (337)
Q Consensus 217 ds~~Td~~l~y~Ps~~~~~~~IAlAal~~A~~~~~ 251 (337)
+++.++.++.|+|++ ||+||+++|+..++
T Consensus 182 ~s~~~~~~l~~~Ps~------IAaAai~lA~~~~~ 210 (258)
T 2i53_A 182 DSLCTTLSLQWEPEI------IAVAVMYLAGRLCK 210 (258)
T ss_dssp HHTTTTGGGTSCHHH------HHHHHHHHHHHHHT
T ss_pred HHHcCCchhccChHH------HHHHHHHHHHHHhC
Confidence 999999999999999 99999999998654
No 6
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=6.8e-36 Score=289.94 Aligned_cols=166 Identities=23% Similarity=0.273 Sum_probs=150.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHh
Q 038028 69 RPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL 148 (337)
Q Consensus 69 ~~~~ls~eeE~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~ 148 (337)
+.+++++++|..+|..+++||.++|..|+||+.|++||++||||||.++++.++++++|++||||||||+||.++++++|
T Consensus 25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~ 104 (358)
T 2pk2_A 25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHV 104 (358)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc------------------cccHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHH
Q 038028 149 GKGI------------------SQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHET 210 (337)
Q Consensus 149 ~~~~------------------~~~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~ 210 (337)
+... ...+++|+.+|+.||++|+|+|.++|||++|..|+..+.. ..++.+.
T Consensus 105 v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~-----------~~~l~~~ 173 (358)
T 2pk2_A 105 IKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA-----------SKDLAQT 173 (358)
T ss_dssp HTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC-----------CHHHHHH
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC-----------CHHHHHH
Confidence 7532 1247899999999999999999999999999999876531 2457889
Q ss_pred HHHHHHHHH-hcCcceecCCCCCcchHHHHHHHHHHHhcccc
Q 038028 211 AKLEVDKIM-LTDAPLLFPPGQVLSVIQLALAALRNSNKVQR 251 (337)
Q Consensus 211 A~~~l~ds~-~Td~~l~y~Ps~~~~~~~IAlAal~~A~~~~~ 251 (337)
||.++++++ .+++++.|+|++ ||+||||+|...++
T Consensus 174 A~~ll~~sl~~t~l~l~y~Ps~------IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 174 SYFMATNSLHLTTFSLQYTPPV------VACVCIHLACKWSN 209 (358)
T ss_dssp HHHHHHHHTTTSCGGGTSCHHH------HTTTTTTTHHHHTT
T ss_pred HHHHHHHHHhcCcchhccCHHH------HHHHHHHHHHHHhC
Confidence 999999998 589999999999 99999999998654
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=8.1e-29 Score=222.49 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHH
Q 038028 83 VFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNY 162 (337)
Q Consensus 83 ~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~ 162 (337)
..+.++|.++|..|+||+.|++||++||||||.+++++.++++.|++||||+|||+||.|++++||+.....+..+|..+
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~ 85 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRC 85 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcchHHHHHHH
Q 038028 163 EMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSVIQLALAA 242 (337)
Q Consensus 163 E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~~~IAlAa 242 (337)
|+.|++.|+|++.++||+.+|..|...++ ...++.+.||.++++++.++++++|+|++ ||+||
T Consensus 86 ~~~ll~~L~~~l~~~~p~~~l~r~~~~l~-----------l~~~~~~~A~~i~~~~~~~~l~~g~~P~~------IAaAa 148 (207)
T 1c9b_A 86 FKLILKALETSVDLITTGDFMSRFCSNLC-----------LPKQVQMAATHIARKAVELDLVPGRSPIS------VAAAA 148 (207)
T ss_dssp HHHHHHHTTCCCCCCCTHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHHHTTCSTTCCHHH------HHHHH
T ss_pred HHHHHHHHCCCcCcCCHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHHHcCccCCCChHH------HHHHH
Confidence 99999999999999999999999987653 12456788999999999999999999999 99999
Q ss_pred HHHHhcccc
Q 038028 243 LRNSNKVQR 251 (337)
Q Consensus 243 l~~A~~~~~ 251 (337)
+|+|++..+
T Consensus 149 iylA~~~~~ 157 (207)
T 1c9b_A 149 IYMASQASA 157 (207)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHHHC
Confidence 999998764
No 8
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=234.87 Aligned_cols=196 Identities=14% Similarity=0.183 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCC-CCHHHhhcccc--c
Q 038028 78 EQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENH-VSAEELGKGIS--Q 154 (337)
Q Consensus 78 E~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~-~sl~~~~~~~~--~ 154 (337)
+..+|...++||.++|..|++++.|.++|++||+||+.++++...+++++++||||||||+||.. .++++|+.... .
T Consensus 67 ~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~ 146 (306)
T 3g33_B 67 KPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAV 146 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCc
Confidence 35699999999999999999999999999999999999999999999999999999999999974 58999876543 5
Q ss_pred cHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcc
Q 038028 155 DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLS 234 (337)
Q Consensus 155 ~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~ 234 (337)
++++|++||+.||++|+|+|.++||+++|..|+..+. ... +....+.+.|+.+++.++.++.++.|+||+
T Consensus 147 ~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~----~~~---~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~--- 216 (306)
T 3g33_B 147 SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS----LPR---DRQALVKKHAQTFLALCATDYTFAMYPPSM--- 216 (306)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS----CCT---TTHHHHHHHHHHHHHHHHHCGGGTTSCHHH---
T ss_pred cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC----CCh---hHHHHHHHHHHHHHHHHHhhhhhccCCHHH---
Confidence 7899999999999999999999999999999987653 111 123456778999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccccc--hHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHh
Q 038028 235 VIQLALAALRNSNKVQRVVN--YESYLSSILSRQNSGHIISDLTENLDTIDSWVMK 288 (337)
Q Consensus 235 ~~~IAlAal~~A~~~~~~~~--~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~ 288 (337)
||+||+++|...++... .+.|...+... .+...+.|....+.|.+++.+
T Consensus 217 ---IAaAai~lA~~~l~~~~~w~~~w~~~L~~~--tg~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 217 ---IATGSIGAAVQGLGACSMSGDELTELLAGI--TGTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp ---HHHHHHHHHHHTCC---CCHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhcCCCCchhhHHHHHHHH--HCCCHHHHHHHHHHHHHHHHH
Confidence 99999999988665211 12333322111 122334555555556555544
No 9
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.95 E-value=1.8e-27 Score=220.73 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--cc
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--QD 155 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~~ 155 (337)
..+|...++||.++|..++++++|.++|+.||+||+.++++...+++++++||||||||+||. +.++++|+.... .+
T Consensus 48 ~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~ 127 (257)
T 1g3n_C 48 SHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFS 127 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCC
Confidence 568999999999999999999999999999999999999999999999999999999999997 789999986543 57
Q ss_pred HHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcch
Q 038028 156 HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSV 235 (337)
Q Consensus 156 ~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~ 235 (337)
+++|+++|+.||++|+|++.++||+.+|..|+..+. .+. +....+.+.|+.+++.++.+..++.|+||+
T Consensus 128 ~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~----~~~---~~~~~~~~~a~~~le~~l~d~~~~~~~PS~---- 196 (257)
T 1g3n_C 128 RQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLV----GGS---QHLDFWHHEVNTLITKALVDPLTGSLPASI---- 196 (257)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHS----CSS---TTHHHHHHHHHHHHHHHHTSTTGGGSCHHH----
T ss_pred HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC----CCh---hHHHHHHHHHHHHHHHHHhCcchhCcCHHH----
Confidence 899999999999999999999999999999987763 111 123456778999999999888899999999
Q ss_pred HHHHHHHHHHHhccccccc---hHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcCC
Q 038028 236 IQLALAALRNSNKVQRVVN---YESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKF 291 (337)
Q Consensus 236 ~~IAlAal~~A~~~~~~~~---~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~~ 291 (337)
||+||+++|...++... ...|....... .+...+.|....+.|.++++++..
T Consensus 197 --iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~--t~~~~~~l~~c~~~i~~l~~~~~~ 251 (257)
T 1g3n_C 197 --ISAAGCALLVPANVIPQDTHSGGVVPQLASI--LGCDVSVLQAAVEQILTSVSDFDL 251 (257)
T ss_dssp --HHHHHHHHHCCGGGSCC-----CHHHHHHHH--HTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHhCCCcccchhhHHHHHHHH--HCcCHHHHHHHHHHHHHHHHHCCH
Confidence 99999999988765211 12344432211 123445677777777777777653
No 10
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.95 E-value=2.1e-27 Score=221.84 Aligned_cols=156 Identities=23% Similarity=0.205 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--cc
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--QD 155 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~~ 155 (337)
..+|...++||.++|..++++++|.++|+.||+||+.++++.+.+++++++||||||||+||. +.++++|+.... .+
T Consensus 35 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~ 114 (269)
T 2b9r_A 35 GNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT 114 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999 678999986553 47
Q ss_pred HHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcch
Q 038028 156 HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSV 235 (337)
Q Consensus 156 ~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~ 235 (337)
+++|+.+|+.||++|+|++.+++|+++|..|...++ ....+...||.++++++.++.++.|+|+.
T Consensus 115 ~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~-----------~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~---- 179 (269)
T 2b9r_A 115 KHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE-----------VDVEQHTLAKYLMELTMLDYDMVHFPPSQ---- 179 (269)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSC-----------CCHHHHHHHHHHHHHGGGCGGGSSSCTTH----
T ss_pred HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhhhhhcCCHHH----
Confidence 999999999999999999999999999998875321 11346678999999999999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 038028 236 IQLALAALRNSNKVQR 251 (337)
Q Consensus 236 ~~IAlAal~~A~~~~~ 251 (337)
||+||+++|...++
T Consensus 180 --iAaAai~lA~~~l~ 193 (269)
T 2b9r_A 180 --IAAGAFSLALKILD 193 (269)
T ss_dssp --HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhC
Confidence 99999999988654
No 11
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.94 E-value=3.3e-26 Score=211.85 Aligned_cols=197 Identities=15% Similarity=0.203 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--cc
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--QD 155 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~~ 155 (337)
..+|...++||.+++..++++++|.++|+.|++||+.++++...+++++++||||||||+||. +.++++|+.... .+
T Consensus 49 ~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~ 128 (254)
T 2f2c_A 49 VDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFT 128 (254)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CC
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999996 779999986543 57
Q ss_pred HHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcch
Q 038028 156 HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSV 235 (337)
Q Consensus 156 ~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~ 235 (337)
+++|++||+.||++|+|++.+++|+.+|..|+..+. .+. +....+.+.|+.+++.++.+..++.|+||.
T Consensus 129 ~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~----~~~---~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~---- 197 (254)
T 2f2c_A 129 NLELINQEKDILEALKWDTEAVLATDFLIPLCNALK----IPE---DLWPQLYEAASTTICKALIQPNIALLSPGL---- 197 (254)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTT----CCG---GGHHHHHHHHHHHHHHHTTSGGGTTSCHHH----
T ss_pred HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC----CCh---hhHHHHHHHHHHHHHHHHcCcchhccCHHH----
Confidence 999999999999999999999999999999987653 111 223456778999999998888899999999
Q ss_pred HHHHHHHHHHHhccccccc--hHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcC
Q 038028 236 IQLALAALRNSNKVQRVVN--YESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYK 290 (337)
Q Consensus 236 ~~IAlAal~~A~~~~~~~~--~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~ 290 (337)
||+||+++|....+... .+.|....... .+...+.|....+.|.+++.++.
T Consensus 198 --iAaAai~la~~~~~~~~~~w~~~~~~l~~~--tg~~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 198 --ICAGGLLTTIETDNTNCRPWTCYLEDLSSI--LNFSTNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp --HHHHHHHHHHHTTCCSSCCTHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHhcCCCCCChHHHHHHHHHH--HCcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999987642110 11112221110 11233456666666666666654
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.94 E-value=1.9e-26 Score=215.48 Aligned_cols=159 Identities=20% Similarity=0.261 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--cc
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--QD 155 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~~ 155 (337)
..+|...++||.+++.++++++.|.++|++||+||+.++++.+.+++++++||||||||+||. ++++++|+.... .+
T Consensus 54 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~ 133 (271)
T 2w96_A 54 PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIR 133 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999 889999986543 57
Q ss_pred HHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcch
Q 038028 156 HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSV 235 (337)
Q Consensus 156 ~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~ 235 (337)
+++|+.+|+.||++|+|++.++||+++|..|+..+. ..+ +....+.+.|+.+++.++.+..++.|+||.
T Consensus 134 ~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~----~~~---~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~---- 202 (271)
T 2w96_A 134 PEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMP----EAE---ENKQIIRKHAQTFVALCATDVKFISNPPSM---- 202 (271)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSC----CCH---HHHHHHHHHHHHHHHHHHTSTHHHHSCHHH----
T ss_pred HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC----CCc---hHHHHHHHHHHHHHHHHHhhhhhhccCHHH----
Confidence 999999999999999999999999999999987652 111 122345678999999887666678999999
Q ss_pred HHHHHHHHHHHhccc
Q 038028 236 IQLALAALRNSNKVQ 250 (337)
Q Consensus 236 ~~IAlAal~~A~~~~ 250 (337)
||+||+++|...+
T Consensus 203 --iAaAai~lA~~~l 215 (271)
T 2w96_A 203 --VAAGSVVAAVQGL 215 (271)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999998754
No 13
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.94 E-value=3e-26 Score=212.85 Aligned_cols=157 Identities=21% Similarity=0.199 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--cc
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--QD 155 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~~ 155 (337)
..+|...++||.++|..|+++++|.++|++||+||+.++++.+.+++++++||||||||+||. +.++++|+.... .+
T Consensus 36 ~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~ 115 (260)
T 2cch_B 36 NSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 115 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcC
Confidence 468999999999999999999999999999999999999999999999999999999999999 789999986543 57
Q ss_pred HHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCc-ceecCCCCCcc
Q 038028 156 HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDA-PLLFPPGQVLS 234 (337)
Q Consensus 156 ~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~-~l~y~Ps~~~~ 234 (337)
+++|+.+|+.||++|+|++.++||+.+|..|+..++ ..+ ..+...||.++++++.+.. ++.|+|+.
T Consensus 116 ~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~----~~~------~~~~~~a~~l~e~sl~~~~~~~~~~Ps~--- 182 (260)
T 2cch_B 116 KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PAN------CKVESLAMFLGELSLIDADPYLKYLPSV--- 182 (260)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCS----SCC------HHHHHHHHHHHHHHHHCHHHHTTSCHHH---
T ss_pred HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC----CCh------HHHHHHHHHHHHHHHHhHHHHhCCCHHH---
Confidence 999999999999999999999999999999986542 111 2567789999999877766 88999999
Q ss_pred hHHHHHHHHHHHhcccc
Q 038028 235 VIQLALAALRNSNKVQR 251 (337)
Q Consensus 235 ~~~IAlAal~~A~~~~~ 251 (337)
||+||+++|...++
T Consensus 183 ---iAaAai~lA~~~~~ 196 (260)
T 2cch_B 183 ---IAGAAFHLALYTVT 196 (260)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhC
Confidence 99999999987654
No 14
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.91 E-value=5.8e-24 Score=196.85 Aligned_cols=199 Identities=11% Similarity=0.099 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC-CCCHHHhhccc--c
Q 038028 77 EEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGI--S 153 (337)
Q Consensus 77 eE~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~--~ 153 (337)
-...+|...++||.+++..+++.++|.++|+.|++||+.++++...+.+++++||+|||+|+||. +.++++|+... .
T Consensus 44 i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~ 123 (252)
T 1f5q_B 44 FTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGA 123 (252)
T ss_dssp HHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999998 56899987543 3
Q ss_pred ccHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCc
Q 038028 154 QDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVL 233 (337)
Q Consensus 154 ~~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~ 233 (337)
.++++|++||+.||++|+|++.+++|+.+|..|+..+. .+. +....+...|+.++..++...-++.|+||.
T Consensus 124 yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~----~~~---~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~-- 194 (252)
T 1f5q_B 124 TTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH----APR---EDYLNIYNLCRPKIFCALCDGRSAMKRPVL-- 194 (252)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT----CCH---HHHHHHHHHHHHHHHHHHHCHHHHTSCHHH--
T ss_pred CCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC----CCc---chHHHHHHHHHHHHHHHHhchhhhccCHHH--
Confidence 57899999999999999999999999999999987652 111 122346778999998887766778999999
Q ss_pred chHHHHHHHHHHHhccccccchHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhcCC
Q 038028 234 SVIQLALAALRNSNKVQRVVNYESYLSSILSRQNSGHIISDLTENLDTIDSWVMKYKF 291 (337)
Q Consensus 234 ~~~~IAlAal~~A~~~~~~~~~e~y~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~~ 291 (337)
||+||+..+.... ......|...... -.+...++|....+.|.+++.++..
T Consensus 195 ----iAaaa~~~~l~~~-~~~~~~~~~~L~~--~t~~~~~~l~~C~~~i~~~l~~~~~ 245 (252)
T 1f5q_B 195 ----ITLACMHLTMNQK-YDYYENRIDGVCK--SLYITKEELHQCCDLVDIAIVSFDE 245 (252)
T ss_dssp ----HHHHHHHHHHTTT-CHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHHHHCCT
T ss_pred ----HHHHHHHHHhccC-CCchhhHHHHHHH--HHCcCHHHHHHHHHHHHHHHHHhCh
Confidence 9999976665321 1111222222111 1123456677777777777777654
No 15
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.91 E-value=9.2e-24 Score=188.40 Aligned_cols=156 Identities=16% Similarity=0.233 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHH
Q 038028 78 EQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQ 157 (337)
Q Consensus 78 E~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~ 157 (337)
|+.+. ...++|.++|..|+||+.|..+|..||+||+..+.+...++..+++||||+|||.||.|++++||+.....+..
T Consensus 6 er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~ 84 (200)
T 1ais_B 6 ERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKK 84 (200)
T ss_dssp --CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHH
T ss_pred HHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHH
Confidence 34444 58999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHcCCccee--CCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCCCcch
Q 038028 158 MILNYEMIVYQALEFDLIV--YPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQVLSV 235 (337)
Q Consensus 158 ~Il~~E~~lL~~L~F~L~v--~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~~~~~ 235 (337)
+|..+|..|++.|+|++.+ .||+.++..|...++ ....+.+.||.+++++..++++..++|+.
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~-----------l~~~v~~~A~~i~~~~~~~~~~~gr~P~~---- 149 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG-----------LSEKVRRRAIEILDEAYKRGLTSGKSPAG---- 149 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT-----------CCHHHHHHHHHHHHHHHHTTCCTTSCHHH----
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHcCcccCCCHHH----
Confidence 9999999999999999999 999999999998763 12457789999999999999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 038028 236 IQLALAALRNSNKVQR 251 (337)
Q Consensus 236 ~~IAlAal~~A~~~~~ 251 (337)
||+||+|+|++..+
T Consensus 150 --iAaAaly~A~~~~~ 163 (200)
T 1ais_B 150 --LVAAALYIASLLEG 163 (200)
T ss_dssp --HHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhC
Confidence 99999999998754
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.90 E-value=2.8e-23 Score=195.28 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CcccccChHHHHHHHHHHHhhccCC-CCCHHHhhcccc--c
Q 038028 79 QSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQ-WSVMEHHPKNIMLTCVYAACKIEEN-HVSAEELGKGIS--Q 154 (337)
Q Consensus 79 ~~l~~~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~-~S~~~~~p~lv~~tcLfLA~K~EE~-~~sl~~~~~~~~--~ 154 (337)
..+|...++||.+++..++++++|.++|+.||+||+.+ .++...+++++++||||||||+||. +.++++|+.... .
T Consensus 47 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~ 126 (283)
T 1w98_B 47 PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC 126 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCC
Confidence 45899999999999999999999999999999999998 6899999999999999999999998 678999986553 4
Q ss_pred cHHHHHHHHHHHHHHcCCcceeCCChhHHHHHHHHHHhhhcccchh---h-hhHHHHHHHHHHHHHHHHhcCcceecCCC
Q 038028 155 DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGE---L-QMLKDLHETAKLEVDKIMLTDAPLLFPPG 230 (337)
Q Consensus 155 ~~~~Il~~E~~lL~~L~F~L~v~~P~~~L~~~~~~l~~~~~~~~~~---~-~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps 230 (337)
++++|+.||+.||++|+|++.+++|+.+|..|+..+.. ++.. . .........+..+++.++.+..++.|+||
T Consensus 127 ~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS 202 (283)
T 1w98_B 127 SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL----NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYG 202 (283)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC----CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHH
T ss_pred CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc----CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHH
Confidence 79999999999999999999999999999999876531 1100 0 00112333466788888888889999999
Q ss_pred CCcchHHHHHHHHHHHhc
Q 038028 231 QVLSVIQLALAALRNSNK 248 (337)
Q Consensus 231 ~~~~~~~IAlAal~~A~~ 248 (337)
. ||+||+++|..
T Consensus 203 ~------iAaAai~la~~ 214 (283)
T 1w98_B 203 I------LAASALYHFSS 214 (283)
T ss_dssp H------HHHHHHHHTSC
T ss_pred H------HHHHHHHHHHC
Confidence 9 99999999964
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-21 Score=188.59 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHH
Q 038028 84 FYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYE 163 (337)
Q Consensus 84 ~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E 163 (337)
.....|.++|..|+||+.|+.+|..||+|||..+++...+...|++||||+|||.|+.|+++++|+..+..+..+|..++
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHcC------------CcceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCC
Q 038028 164 MIVYQALE------------FDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQ 231 (337)
Q Consensus 164 ~~lL~~L~------------F~L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~ 231 (337)
+.|++.|+ |++.+.||+.++..|...|. ....+.+.||.+++++..++++..++|+.
T Consensus 208 ~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~-----------l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~ 276 (345)
T 3k7a_M 208 NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG-----------LPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHHTCC----------------------------------------------------------------------
T ss_pred HHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHhchhcCCCHHH
Confidence 99999999 99999999999999988763 12457789999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhcccc
Q 038028 232 VLSVIQLALAALRNSNKVQR 251 (337)
Q Consensus 232 ~~~~~~IAlAal~~A~~~~~ 251 (337)
||+||||+|+..++
T Consensus 277 ------IAaAaIylAa~~~~ 290 (345)
T 3k7a_M 277 ------IAVVSIYLNILLFQ 290 (345)
T ss_dssp --------------------
T ss_pred ------HHHHHHHHHHHHHC
Confidence 99999999998654
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.65 E-value=2.3e-16 Score=152.02 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHH
Q 038028 84 FYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYE 163 (337)
Q Consensus 84 ~~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E 163 (337)
.....|.++|..|+||..|..+|..+|++++..+.+.......|++||||+||+.++.|+++.+|+.....+..+|....
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~ 207 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHH
Confidence 36678999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHcCCc------------ceeCCChhHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhcCcceecCCCC
Q 038028 164 MIVYQALEFD------------LIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQ 231 (337)
Q Consensus 164 ~~lL~~L~F~------------L~v~~P~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~~A~~~l~ds~~Td~~l~y~Ps~ 231 (337)
..|.+.|+.. +...+|..++..|...|. ....+...|+.+++.+...++.....|..
T Consensus 208 k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~-----------l~~~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 208 NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG-----------LPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHCC-------------------------------------------------------------------------
T ss_pred HHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHhcccccCCChHH
Confidence 9999999974 667799999999987763 22456778999999988888888999999
Q ss_pred CcchHHHHHHHHHHHhcccc
Q 038028 232 VLSVIQLALAALRNSNKVQR 251 (337)
Q Consensus 232 ~~~~~~IAlAal~~A~~~~~ 251 (337)
||+||||+|+...+
T Consensus 277 ------IAAAaIylAa~l~g 290 (345)
T 4bbr_M 277 ------IAVVSIYLNILLFQ 290 (345)
T ss_dssp --------------------
T ss_pred ------HHHHHHHHHHHHhC
Confidence 99999999998654
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.23 E-value=3.8e-06 Score=74.02 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHHHH
Q 038028 86 ENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMI 165 (337)
Q Consensus 86 ~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E~~ 165 (337)
..+|.++|..|++|..+..+|..++++.....-+..++|..|++||||+||+..+.+++.++++.........|...=..
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~ 188 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE 188 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 35788899999999999999999999999888888999999999999999999999999999988887788889999999
Q ss_pred HHHHcCCcc
Q 038028 166 VYQALEFDL 174 (337)
Q Consensus 166 lL~~L~F~L 174 (337)
+.+.|+.++
T Consensus 189 l~~~l~~~~ 197 (200)
T 1ais_B 189 LVEKLKIKV 197 (200)
T ss_dssp HHHHHTCCC
T ss_pred HHHHcCCCC
Confidence 999998765
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.93 E-value=3.3e-05 Score=68.34 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHHHH
Q 038028 86 ENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMI 165 (337)
Q Consensus 86 ~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E~~ 165 (337)
..+|.++|..++++..+..+|..++.+-+...-+..+.|..|++||||+||+..+.+++.+++......+..+|...-..
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~ 182 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRL 182 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45788899999999999999999999988877778999999999999999999999999999988777778888877777
Q ss_pred HHHHcCC
Q 038028 166 VYQALEF 172 (337)
Q Consensus 166 lL~~L~F 172 (337)
|.+.++.
T Consensus 183 l~~~l~~ 189 (207)
T 1c9b_A 183 IYPRAPD 189 (207)
T ss_dssp HGGGHHH
T ss_pred HHHHHHH
Confidence 7666553
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.62 E-value=0.00026 Score=65.94 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCc---ccccChHHHHHHHHHHHhhcc-CCCCCHHHhhccccccHHHHHH
Q 038028 86 ENKLREVCSAFYFPNKIQATALLYFKRFYLQWS---VMEHHPKNIMLTCVYAACKIE-ENHVSAEELGKGISQDHQMILN 161 (337)
Q Consensus 86 ~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S---~~~~~p~lv~~tcLfLA~K~E-E~~~sl~~~~~~~~~~~~~Il~ 161 (337)
..+|.++...-+++..+.-.|++|++|+..++. +.....+-+.++||-+|+|+= +...+-+.+++.-....+++-.
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~ 157 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNI 157 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHH
Confidence 345677777888999999999999999987533 346788899999999999954 4456777777665567899999
Q ss_pred HHHHHHHHcCCcceeCCChhHHHHHHHH
Q 038028 162 YEMIVYQALEFDLIVYPPYRPLEGFIND 189 (337)
Q Consensus 162 ~E~~lL~~L~F~L~v~~P~~~L~~~~~~ 189 (337)
+|+..|..|+|+|.|. +..+...++..
T Consensus 158 LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 158 LENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 9999999999999875 44444434433
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.001 Score=63.62 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHH
Q 038028 86 ENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMI 159 (337)
Q Consensus 86 ~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~I 159 (337)
..+|.++|..|+++..|..+|..+.++.....-...+.|..|++||||+||.+.+..++..+++.....+...|
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TI 309 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTI 309 (345)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH
Confidence 35677899999999999999999999988777677899999999999999999888888888876554433333
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.97 E-value=0.0012 Score=63.21 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHH
Q 038028 85 YENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMI 159 (337)
Q Consensus 85 ~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~I 159 (337)
-..+|.++|..|+|+..|..+|..++++.....-....+|.-|++||||+||.+.+..++.+++++........|
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TI 309 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTI 309 (345)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHH
Confidence 346788899999999999999999999888766667889999999999999999998899888877654433333
No 24
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.77 E-value=0.023 Score=52.55 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHHHHH
Q 038028 87 NKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIV 166 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E~~l 166 (337)
.+|..++..++.+..+...|..++..-+....+..|.|..|++||||||+++.+... ..+-..+..+.++|.+.-..|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~i 236 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVI 236 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHH
Confidence 367788888899999999999999998887778899999999999999999876432 333334445556665554444
Q ss_pred HH
Q 038028 167 YQ 168 (337)
Q Consensus 167 L~ 168 (337)
++
T Consensus 237 l~ 238 (285)
T 3rgf_B 237 LK 238 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.94 E-value=0.051 Score=48.58 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC
Q 038028 87 NKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN 141 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~ 141 (337)
.+|.+++..++++..+...|..++..-+....+..|.|..|++||||+|++..+.
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 4677777888999999999999999998888888999999999999999998654
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.27 E-value=0.13 Score=46.25 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHH-------Hhhccc--c
Q 038028 87 NKLREVCSAFYFPN----KIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-------ELGKGI--S 153 (337)
Q Consensus 87 ~~I~~~~~~l~lp~----~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~-------~~~~~~--~ 153 (337)
.+|..++..++.+. .+...|..++..-+....+..|.|..|++||+|+|++.-+..++-. .+-..+ .
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 36777788888876 6788898999988888888899999999999999999876543211 111122 3
Q ss_pred ccHHHHHHHHHHHHHHcC
Q 038028 154 QDHQMILNYEMIVYQALE 171 (337)
Q Consensus 154 ~~~~~Il~~E~~lL~~L~ 171 (337)
.+.++|.+.-..|++...
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 466777777666665443
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.59 E-value=0.27 Score=44.24 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cCcccccChHHHHHHHHHHHhhccCCCC
Q 038028 87 NKLREVCSAFYFPNKIQATALLYFKRFYL-QWSVMEHHPKNIMLTCVYAACKIEENHV 143 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~aTA~~yf~RFyl-~~S~~~~~p~lv~~tcLfLA~K~EE~~~ 143 (337)
.+|..++..++.+..+..+|..++..-+. ..-+..|.|..|++||+|+|++.-+..+
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~ 205 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEI 205 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCC
Confidence 36777788889998888888888766553 4446789999999999999999866543
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=92.27 E-value=0.2 Score=45.31 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHhccCc-ccccChHHHHHHHHHHHhhccCCCCCHHHhhccccccHHHHHHHHH
Q 038028 87 NKLREVCSAFYFPN-KIQATALLYFKRFYLQWS-VMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEM 164 (337)
Q Consensus 87 ~~I~~~~~~l~lp~-~V~aTA~~yf~RFyl~~S-~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~~~~~~~Il~~E~ 164 (337)
.++..++..++++. .+...|..+...-..... +..|.|..||+||+|+|++.-+.+.-...+....+.+.++|...=.
T Consensus 141 ~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~ 220 (260)
T 2cch_B 141 QFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLM 220 (260)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHH
Confidence 57778888888876 677777766665554455 6789999999999999998765443333343333344555554444
Q ss_pred HHH
Q 038028 165 IVY 167 (337)
Q Consensus 165 ~lL 167 (337)
.|.
T Consensus 221 ~l~ 223 (260)
T 2cch_B 221 DLH 223 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=92.24 E-value=0.14 Score=46.72 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCC
Q 038028 87 NKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENH 142 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~ 142 (337)
.+|..++..++++..+...|..++..-+....+..|.|..||+||+|+|++.-+..
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 46777888889998888888888888877777889999999999999999976654
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=91.17 E-value=0.6 Score=41.99 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccC-CCCC----HHHhhccccccHHH
Q 038028 88 KLREVCSAFYFPNKI----QATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEE-NHVS----AEELGKGISQDHQM 158 (337)
Q Consensus 88 ~I~~~~~~l~lp~~V----~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE-~~~s----l~~~~~~~~~~~~~ 158 (337)
++..++..++++... ...|..++..-.....+..|.|..||+||+|+|.+... .+.+ ...+....+.+.++
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~ 234 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNT 234 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHH
Confidence 566677778877653 34566666655556667789999999999999999852 2333 33443333445555
Q ss_pred HHHHHHHH
Q 038028 159 ILNYEMIV 166 (337)
Q Consensus 159 Il~~E~~l 166 (337)
|..+=..|
T Consensus 235 l~~c~~~i 242 (254)
T 2f2c_A 235 VRTVKDQV 242 (254)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55443333
No 31
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=90.41 E-value=0.35 Score=46.14 Aligned_cols=83 Identities=8% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cCcccccChHHHHHHHHHHHhhccCCCCCHH----Hhhccc--cccHHHH
Q 038028 87 NKLREVCSAFYFPNKIQATALLYFKRFYL-QWSVMEHHPKNIMLTCVYAACKIEENHVSAE----ELGKGI--SQDHQMI 159 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~aTA~~yf~RFyl-~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~----~~~~~~--~~~~~~I 159 (337)
.+|..++..++.+..+..+|..++..-+. ..-+..|.|..||+||||||+++-+..++.. .+...+ ..+.+.|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 46777888889999998889888877664 3346789999999999999999876543321 122222 1245566
Q ss_pred HHHHHHHHHH
Q 038028 160 LNYEMIVYQA 169 (337)
Q Consensus 160 l~~E~~lL~~ 169 (337)
.+.-..|+..
T Consensus 235 ~~i~~~il~~ 244 (358)
T 2pk2_A 235 DELTHEFLQI 244 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=88.31 E-value=1 Score=40.52 Aligned_cols=55 Identities=2% Similarity=-0.228 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCHHH----HHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC
Q 038028 87 NKLREVCSAFYFPNKI----QATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN 141 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V----~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~ 141 (337)
.++..++..++.+... ...|..++.--.....+..|.|..||+||+|+|.+.-+.
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 3666667777776443 345666666666666678899999999999999997753
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=88.24 E-value=0.66 Score=43.47 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCC
Q 038028 97 YFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENH 142 (337)
Q Consensus 97 ~lp~~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~ 142 (337)
+.|..+...|..|+..-+....+..|.|..||+||||+|++..+..
T Consensus 182 ~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~ 227 (323)
T 1jkw_A 182 ENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGIT 227 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCC
Confidence 3456677888888888877777778999999999999999976543
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=86.08 E-value=1.6 Score=40.46 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCHH----HHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCC-CCH----HHhhccccccHHH
Q 038028 88 KLREVCSAFYFPNK----IQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENH-VSA----EELGKGISQDHQM 158 (337)
Q Consensus 88 ~I~~~~~~l~lp~~----V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~-~sl----~~~~~~~~~~~~~ 158 (337)
+|..+...++.+.. +...|..|+.--.....+..|.|..||+||+|+|.+.-+.. ... +.+......+.++
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~ 253 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDC 253 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHH
Confidence 56666677776533 44556666666666667788999999999999999976532 221 2222333445555
Q ss_pred HHHHHHHHHHHcC
Q 038028 159 ILNYEMIVYQALE 171 (337)
Q Consensus 159 Il~~E~~lL~~L~ 171 (337)
|..+-..|++.+.
T Consensus 254 l~~c~~~I~~l~~ 266 (306)
T 3g33_B 254 LRACQEQIEAALR 266 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=85.87 E-value=1.5 Score=39.73 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCHHHH----HHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCC--CC-C------HHHhhcccc
Q 038028 87 NKLREVCSAFYFPNKIQ----ATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN--HV-S------AEELGKGIS 153 (337)
Q Consensus 87 ~~I~~~~~~l~lp~~V~----aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~--~~-s------l~~~~~~~~ 153 (337)
.+|..++..++++..+. ..|..|+..-.....+..|.|..||+||+|+|+..-+. +. + .+.+....+
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~ 238 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIK 238 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHC
Confidence 46677788888887653 34555555444444566899999999999999875432 11 1 123333334
Q ss_pred ccHHHHHHHHHHHHHHcCCc
Q 038028 154 QDHQMILNYEMIVYQALEFD 173 (337)
Q Consensus 154 ~~~~~Il~~E~~lL~~L~F~ 173 (337)
.+.++|...=..|++.++=.
T Consensus 239 v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 239 CDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp SCHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 45556655555555544433
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=84.99 E-value=4.9 Score=30.89 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCc-----ccccChHHHHHHHHHHHhhccCCCCCHHHhh
Q 038028 89 LREVCSAFYFPNKIQATALLYFKRFYLQWS-----VMEHHPKNIMLTCVYAACKIEENHVSAEELG 149 (337)
Q Consensus 89 I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S-----~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~ 149 (337)
|.++|..|+++. +...|-.++.+|=..-+ -.+++.-...++|+|.|||.--..++=..+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~ 70 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMV 70 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHH
Confidence 578999999987 67778899999875321 2255455678899999999988877644444
No 37
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=84.51 E-value=2.7 Score=40.81 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccc
Q 038028 85 YENKLREVCSAFYFPN----KIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGI 152 (337)
Q Consensus 85 ~~~~I~~~~~~l~lp~----~V~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~ 152 (337)
....|.++|.+|++++ .-+.|++-+.=. .-..-+++-|..-++++|+|.-||+....++..++...+
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~-~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQ-NEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-HCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-hhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 4457889999998764 345555433321 123345688999999999999999998889999987655
No 38
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=80.22 E-value=3.9 Score=38.79 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhc--cCcccccChHHHHHHHHHHHhhccCCCCCHHHhhccc
Q 038028 85 YENKLREVCSAFYFPN-KIQATALLYFKRFYL--QWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGI 152 (337)
Q Consensus 85 ~~~~I~~~~~~l~lp~-~V~aTA~~yf~RFyl--~~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~ 152 (337)
....|.++|..|+++. .+..-.-+.|..... ..-+.+-|..-++++|+|.-||+....++-.++...+
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3457899999998764 333333334443333 2345678999999999999999998888988887655
No 39
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=76.69 E-value=6.4 Score=34.58 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCc---ccccChHHHHHHHHHHHhhccCCCCCHHHh
Q 038028 85 YENKLREVCSAFYFPNKIQATALLYFKRFYLQWS---VMEHHPKNIMLTCVYAACKIEENHVSAEEL 148 (337)
Q Consensus 85 ~~~~I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S---~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~ 148 (337)
..+.|..+.++-++|..|+.-|+-+-+.|.-... ..--+++.|++||+-+|+---..|+++.++
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~ 81 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEV 81 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHH
Confidence 4566788889999999999999999999986432 334589999999999999888889998775
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=73.96 E-value=7.7 Score=36.06 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCc---ccccChHHHHHHHHHHHhhc-cCCCCCHHHhh
Q 038028 89 LREVCSAFYFPNKIQATALLYFKRFYLQWS---VMEHHPKNIMLTCVYAACKI-EENHVSAEELG 149 (337)
Q Consensus 89 I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S---~~~~~p~lv~~tcLfLA~K~-EE~~~sl~~~~ 149 (337)
..++|+.|+++..|...|...|++--..-+ -..-+......+|||.||.. ++..+++-++.
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LL 70 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQ 70 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHH
Confidence 457899999999999999999999666422 23345677788889999974 44457776654
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=71.09 E-value=9.8 Score=39.04 Aligned_cols=69 Identities=13% Similarity=0.281 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhcc--CcccccChHHHHHHHHHHHhhccCCCCCHHHhhccc
Q 038028 84 FYENKLREVCSAFYFPN-KIQATALLYFKRFYLQ--WSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGI 152 (337)
Q Consensus 84 ~~~~~I~~~~~~l~lp~-~V~aTA~~yf~RFyl~--~S~~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~~~~ 152 (337)
.....|..+|.+|++++ .+..-.-+.|+..... .-+.+-|...++++|+|.-||+....++-.++...+
T Consensus 526 LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 34478999999998763 3333333444444432 335578999999999999999999888888887654
No 42
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=68.59 E-value=19 Score=32.53 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHhccCcccccChHHHHHHHHHHHhh
Q 038028 109 YFKRFYLQWSVMEHHPKNIMLTCVYAACK 137 (337)
Q Consensus 109 yf~RFyl~~S~~~~~p~lv~~tcLfLA~K 137 (337)
++..-.....+..|.|..||+||+|+|+.
T Consensus 186 llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 186 LLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 33433434456789999999999999974
No 43
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.89 E-value=54 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHHcCCCHHHHHHHHHHHH--HHhccCcc
Q 038028 72 PLNIEEEQSMRVFYEN--------KLREVCSAFYFPNKIQATALLYFK--RFYLQWSV 119 (337)
Q Consensus 72 ~ls~eeE~~l~~~~~~--------~I~~~~~~l~lp~~V~aTA~~yf~--RFyl~~S~ 119 (337)
-+|.+.-..|..+|.. -+..++..++||..++- ++|+ |||.++.-
T Consensus 13 ~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq---VWFQNrR~~~~~~~ 67 (71)
T 1wi3_A 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII---KFFQNQRYHVKHSG 67 (71)
T ss_dssp CCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH---HHHHHHHHHCCSSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH---HhhccceeeecCCC
Confidence 5778888888888877 68889999999988764 4664 89998754
No 44
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=43.87 E-value=64 Score=28.62 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHHHhccCcccccChHHHHHHHHHHHh
Q 038028 88 KLREVCSAFYFPNKI----QATALLYFKRFYLQWSVMEHHPKNIMLTCVYAAC 136 (337)
Q Consensus 88 ~I~~~~~~l~lp~~V----~aTA~~yf~RFyl~~S~~~~~p~lv~~tcLfLA~ 136 (337)
|+..+...++.+... ...|..++.-......+..|.|-.||++|+.++.
T Consensus 152 FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 152 LICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 204 (252)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh
Confidence 555556666766542 2344444444444455668999999999987765
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=40.01 E-value=63 Score=33.11 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCcc----cccChHHHHHHHHHHHhhccCCCCCHHHhh
Q 038028 89 LREVCSAFYFPNKIQATALLYFKRFYLQWSV----MEHHPKNIMLTCVYAACKIEENHVSAEELG 149 (337)
Q Consensus 89 I~~~~~~l~lp~~V~aTA~~yf~RFyl~~S~----~~~~p~lv~~tcLfLA~K~EE~~~sl~~~~ 149 (337)
..++|+.|++...|...|...|..-...++. .+-+....+++.+|.||.+|+..+++-++.
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lL 72 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQ 72 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHH
Confidence 4678999999999999999999988843222 133555666666777777888888876653
Done!