BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038029
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UYP|A Chain A, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
 pdb|1UYP|B Chain B, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
 pdb|1UYP|C Chain C, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
 pdb|1UYP|D Chain D, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
 pdb|1UYP|E Chain E, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
 pdb|1UYP|F Chain F, The Three-Dimensional Structure Of Beta-Fructosidase
           (Invertase) From Thermotoga Maritima
          Length = 432

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 29  HLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVI---------- 78
           HL  +   DDE    F    V+ D K F  ++     + +  E++T  V+          
Sbjct: 59  HLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSENGLDFVK 118

Query: 79  ---NHVVSKPPEKRQRA 92
              N V+SKPPE+   A
Sbjct: 119 YDGNPVISKPPEEGTHA 135


>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
 pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
 pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
 pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
 pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
 pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
           Raffinose
          Length = 432

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 29  HLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVI---------- 78
           HL  +   DDE    F    V+ D K F  ++     + +  E++T  V+          
Sbjct: 59  HLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSENGLDFVK 118

Query: 79  ---NHVVSKPPEKRQRA 92
              N V+SKPPE+   A
Sbjct: 119 YDGNPVISKPPEEGTHA 135


>pdb|1W5D|A Chain A, Crystal Structure Of Pbp4a From Bacillus Subtilis
 pdb|2J9P|A Chain A, Crystal Structure Of The Bacillus Subtilis Pbp4a, And Its
           Complex With A Peptidoglycan Mimetic Peptide.
 pdb|2J9P|B Chain B, Crystal Structure Of The Bacillus Subtilis Pbp4a, And Its
           Complex With A Peptidoglycan Mimetic Peptide
          Length = 462

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 62  SILTSSDNEEEDTGSVINHVVSKPPEKRQRAPS 94
           S LT+S NE+ D G+VI  V     E  + A S
Sbjct: 155 SALTASPNEDYDAGTVIVEVTPNQKEGEEPAVS 187


>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
          Length = 770

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 40 PKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKP 85
          PKEE++ +E   ++ AFK+   +IL+ +  E     + IN   +KP
Sbjct: 14 PKEEWKSQEKSPEKTAFKK-KDTILSLNACESNHAIAAINEGQNKP 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,738,915
Number of Sequences: 62578
Number of extensions: 92017
Number of successful extensions: 193
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)