BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038029
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 82/111 (73%), Gaps = 15/111 (13%)
Query: 1 MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQA----DQKAF 56
+SMVVTVRCGHCTSLLSVN+MKASF+PLHLLAS SH DE KEEV A +++A+
Sbjct: 42 LSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETG----KEEVAATDGVEEEAW 97
Query: 57 -----KRFSPSIL-TSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
K SP+ L +SSDNE+ED V VV+KPPEKRQRAPSAYN FIK
Sbjct: 98 KVNQEKENSPTTLVSSSDNEDEDVSRVY-QVVNKPPEKRQRAPSAYNCFIK 147
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
+VTVRCGHCT+L SVNM A L S S + + E + ++ + I
Sbjct: 35 IVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRI 87
Query: 64 LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
T + E+ +V++PPEKRQR PSAYN+FIK
Sbjct: 88 STRTITEQR--------IVNRPPEKRQRVPSAYNQFIK 117
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 1 MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKE-----EVQADQKA 55
M +VTVRCGHCTSLLSVN+ L+ + +D ++ + E ++ +
Sbjct: 33 MLNIVTVRCGHCTSLLSVNLRG-------LVQALPAEDHLQDNLKMHNMSFRENYSEYGS 85
Query: 56 FKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
R+ + S N+ E V +PPEKRQR PSAYNRFIK
Sbjct: 86 SSRYGRVPMMFSKNDTEHMLHV------RPPEKRQRVPSAYNRFIK 125
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 4 VVTVRCGHCTSLLSVN----MMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRF 59
+VTVRCGHCT+LLS+N + + S P+H D +P + V A
Sbjct: 34 LVTVRCGHCTNLLSLNIGVSLHQTSAPPIH------QDLQPHRQHTTSLVTRKDCASSSR 87
Query: 60 SPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
S + L+ + + E I +PPEKRQR PSAYNRFIK
Sbjct: 88 STNNLSENIDREAPRMPPI-----RPPEKRQRVPSAYNRFIK 124
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 1 MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQA---DQKAFK 57
M +VTVRCGHCT+LLSVN+ +H + D ++ + DQ +
Sbjct: 32 MLNIVTVRCGHCTNLLSVNLRGL----MHSAPAL--QDHHHHHLQESGLSGCFRDQSGYP 85
Query: 58 RFS------------PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
F P + + + + + ++PPEKRQR PSAYNRFIK
Sbjct: 86 EFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIK 141
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 4 VVTVRCGHCTSLLSVNMMKASFVP------LHLLA-SFSHDDEPKEEFR-----KEEVQA 51
VTVRCG CT+LLSVNM ++ +P L L S+ + + EE R +
Sbjct: 49 TVTVRCGCCTNLLSVNM-RSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMM 107
Query: 52 DQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
+Q PS + E +N +PPEKRQR PSAYNRFIK
Sbjct: 108 NQHPTMNDIPSFMDLHQQHEIPKAPPVN----RPPEKRQRVPSAYNRFIK 153
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
+VTVRCGHCT +LS+++ P H + F+ + A + S
Sbjct: 34 IVTVRCGHCTMVLSMDL-----APFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTST 88
Query: 64 LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
+ S I +PPEKRQR PSAYNRFIK
Sbjct: 89 AMYPMPTSQQQVSPI-----RPPEKRQRVPSAYNRFIK 121
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
VTV+CGHC +L ++ PL S D P F Q +R P
Sbjct: 34 TVTVKCGHCNNLSFLSPRPPMVQPL------SPTDHPLGPF-----QGPCTDCRRNQPLP 82
Query: 64 LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
L S + E GS V KPPEK+ R PSAYNRF++
Sbjct: 83 LVSPTSNE---GSPRAPFVVKPPEKKHRLPSAYNRFMR 117
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 4 VVTVRCGHCTSLLSVNMMKAS-------------FVPLHLLASFSHDDEPKEEFRKEEVQ 50
VTVRCGHC +LLSVN+ F P L + H + F+ +
Sbjct: 49 TVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLL 108
Query: 51 ADQKAFKRF--------------SPSILTSSD---NEEEDTGSVINHVVSKPPEKRQRAP 93
+Q A +P++ +E + ++PPEKRQR P
Sbjct: 109 MEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVP 168
Query: 94 SAYNRFIK 101
SAYNRFIK
Sbjct: 169 SAYNRFIK 176
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 4 VVTVRCGHCTSLLSVNMMKAS-------------FVPLHLLASFSHDDEPKEEFRKEEVQ 50
VTVRCGHC +LLSVN+ F P L + H + F+ +
Sbjct: 49 TVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLL 108
Query: 51 ADQKAFKRF--------------SPSILTSSD---NEEEDTGSVINHVVSKPPEKRQRAP 93
+Q A +P++ +E + ++PPEKRQR P
Sbjct: 109 MEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVP 168
Query: 94 SAYNRFIK 101
SAYNRFIK
Sbjct: 169 SAYNRFIK 176
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 23/119 (19%)
Query: 4 VVTVRCGHCTSLLSVNM-MKASFVPLHLLASFSHD------DEPKEEFRKEEVQADQKAF 56
VTVRCGHC++LLSV + M+A +P +++ H P +E Q
Sbjct: 49 TVTVRCGHCSNLLSVTVSMRALLLPS--VSNLGHSFLPPPPPPPPPNLLEEMRSGGQNIN 106
Query: 57 KRFSPSILTSSDNEEED------TGSVINHV--------VSKPPEKRQRAPSAYNRFIK 101
S S+ + E G ++H+ ++PPEKRQR PSAYNRFIK
Sbjct: 107 MNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIK 165
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 81 VVSKPPEKRQRAPSAYNRFIK 101
V+++PPEKRQR PSAYNRFIK
Sbjct: 211 VINRPPEKRQRVPSAYNRFIK 231
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 4 VVTVRCGHCTSLLSVNM 20
VTVRCGHC+SLL+VNM
Sbjct: 84 TVTVRCGHCSSLLTVNM 100
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 4 VVTVRCGHCTSLLSVNMMK---------ASFVPLH--LLASFSH----DDEPKEEFRKEE 48
VTVRCGHC +LLSVN+ A+ +P LL+ S D+ P +
Sbjct: 55 TVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASL 114
Query: 49 V--QADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPP-------------EKRQRAP 93
+ QA S + +++ S N + P EKRQR P
Sbjct: 115 MTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVP 174
Query: 94 SAYNRFIK 101
SAYNRFIK
Sbjct: 175 SAYNRFIK 182
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 4 VVTVRCGHCTSLLSVNMMK---------ASFVPLH--LLASFSH----DDEPKEEFRKEE 48
VTVRCGHC +LLSVN+ A+ +P LL+ S D+ P +
Sbjct: 55 TVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASL 114
Query: 49 V--QADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPP-------------EKRQRAP 93
+ QA S + +++ S N + P EKRQR P
Sbjct: 115 MTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVP 174
Query: 94 SAYNRFIK 101
SAYNRFIK
Sbjct: 175 SAYNRFIK 182
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 4 VVTVRCGHCTSL--LSVNMMKASFVPLHL-LASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
VTV+CGHC +L L+ V L L + SF D +K+ S
Sbjct: 45 TVTVKCGHCGNLSFLTTTPPLQGHVSLTLQMQSFGGSD-----------------YKKGS 87
Query: 61 PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
S +SS + ++ VV KPPEK+QR PSAYNRF++
Sbjct: 88 SSSSSSSTSSDQPPSPSPPFVV-KPPEKKQRLPSAYNRFMR 127
>sp|P15072|POLG_FMDVT Genome polyprotein (Fragment) OS=Foot-and-mouth disease virus
(strain C1) PE=1 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINH 80
P +L +D EP E K VQ K + SP+ T S N+ +TGS+IN+
Sbjct: 174 PSDVLVFVPYDQEPLNEGWKANVQRKLKGAGQSSPA--TGSQNQSGNTGSIINN 225
>sp|P03305|POLG_FMDVO Genome polyprotein OS=Foot-and-mouth disease virus (strain O1) PE=1
SV=1
Length = 2332
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINH 80
P +L +D EP K +VQ K + SP+ T S N+ +TGS+IN+
Sbjct: 174 PSDVLVFVPYDQEPLNGEWKAKVQRKLKGAGQSSPA--TGSQNQSGNTGSIINN 225
>sp|P49303|POLG_FMDVZ Genome polyprotein OS=Foot-and-mouth disease virus (strain A22/550
Azerbaijan 65) PE=3 SV=1
Length = 2336
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINH 80
P +L +D EP K +VQ K + SP+ T S N+ +TGS+IN+
Sbjct: 174 PSDVLVFVPYDQEPLNGEWKAKVQKRLKGAGQSSPA--TGSQNQSGNTGSIINN 225
>sp|Q9HCM3|K1549_HUMAN UPF0606 protein KIAA1549 OS=Homo sapiens GN=KIAA1549 PE=1 SV=4
Length = 1950
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 64 LTSSDNEEEDTGSVINHV--VSKPPEKRQRAPS 94
L SS NE+ + S+ HV +S+PPE +R PS
Sbjct: 1452 LPSSGNEQHSSASIFEHVDRISRPPEASRRVPS 1484
>sp|P03306|POLG_FMDV1 Genome polyprotein OS=Foot-and-mouth disease virus (strain A10-61)
PE=1 SV=2
Length = 2332
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINH 80
P +L +D EP K +VQ K + SP+ T S N+ +TGS+IN+
Sbjct: 174 PSDVLVFVPYDQEPLNGDWKTQVQKKLKGAGQSSPA--TGSQNQSGNTGSIINN 225
>sp|P47150|RT07_YEAST 37S ribosomal protein S7, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RSM7 PE=1 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 43 EFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
+ R++ +QA +K+ +P ++T + N TG V+ P KRQR A+N ++
Sbjct: 144 QTRQDPIQALEKSLDELAPLMMTKTFN----TGVAKASVIPVPLNKRQRNRIAWNWIVQ 198
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDE--PKEEFRKEEVQADQKAFKRFSP 61
VV V+CGHC+ +LS + S V + + D P E+ E D++
Sbjct: 40 VVAVQCGHCSGILSAVNLPPSPVSASIELTPQELDAGPPPGEYSDESSGDDREGRDAEDD 99
Query: 62 SILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
+ ++ ++QR PSAYN F+K
Sbjct: 100 APAPAAAAVANKPPG-----------RKQRTPSAYNCFVK 128
>sp|B8H8Y9|RSMG_ARTCA Ribosomal RNA small subunit methyltransferase G OS=Arthrobacter
chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 /
JCM 12360) GN=rsmG PE=3 SV=1
Length = 216
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 47 EEVQADQKAFKRFSP---SILTSSDNEEEDTGSVINHVVSKPPEK 88
EE++ KA ++ S+LT DN E+ +V+ VV+KP +K
Sbjct: 171 EEIEKAAKAIRKLGGVETSVLTVGDNLLEEPTTVVRIVVNKPQKK 215
>sp|P03308|POLG_FMDVA Genome polyprotein OS=Foot-and-mouth disease virus (strain A12)
PE=1 SV=1
Length = 2332
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINH 80
P +L +D EP K VQ K + SP+ T S N+ +TGS+IN+
Sbjct: 173 PSDVLVFVPYDQEPLNGGWKANVQRKLKGAGQSSPA--TGSQNQSGNTGSIINN 224
>sp|Q6CEU8|SIP5_YARLI Protein SIP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SIP5 PE=3 SV=1
Length = 497
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 27 PLHLLASFSHDDEPKEEFRKEEVQADQKAFKRF--SPSILTSSDNEEEDTGSVINHVV-- 82
P H L+S + +P E + D F + +PS + S + ++ED +IN +
Sbjct: 159 PRHTLSSNNPFRDPLEHMSHLRIDLDNTTFSQSAPTPSWMRSGEPDQEDGDELINPGILQ 218
Query: 83 -------SKPPEKRQRAPSAYNR 98
KPP RQRA + N+
Sbjct: 219 SPPSREAPKPPPSRQRAKTLTNK 241
>sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3
Length = 372
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 22 KASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHV 81
KA P H+L + ++D+E + + + A R P +L ++ T +
Sbjct: 73 KARIAPRHILLAVANDEELNQLLKGVTI-ASGGVLPRIHPELLA----KKRGTKGKSETI 127
Query: 82 VSKPPEKRQR 91
+S PPEKR R
Sbjct: 128 LSPPPEKRGR 137
>sp|Q8CCK0|H2AW_MOUSE Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3
Length = 372
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 22 KASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHV 81
KA P H+L + ++D+E + + + A R P +L ++ T +
Sbjct: 73 KARIAPRHILLAVANDEELNQLLKGVTI-ASGGVLPRIHPELLA----KKRGTKGKSETI 127
Query: 82 VSKPPEKRQR 91
+S PPEKR R
Sbjct: 128 LSPPPEKRGR 137
>sp|Q5AG86|CIAO1_CANAL Probable cytosolic iron-sulfur protein assembly protein 1
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CIA1 PE=3 SV=1
Length = 383
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 22 KASFVPLHLLASFSHD--------DEPKEEFRKEEVQADQKAFKRFSPSILTSSDNE 70
K+ F+ L LA+ S D DEP E+ EEV A+QK ILTS +NE
Sbjct: 77 KSDFLDLPALAAGSFDSTISVWGIDEPDVEYDIEEVIANQK-------EILTSPNNE 126
>sp|Q54JM9|NIT2_DICDI Nitrilase homolog 2 OS=Dictyostelium discoideum GN=nit2 PE=3 SV=1
Length = 328
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 33 SFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHV--VSKPPEKRQ 90
SF+H ++ RK + AD++ +F+ L DN+EE+ + I H+ +K K
Sbjct: 32 SFTH---ISQQLRKVHLMADKEKVFKFAGIQLLCGDNKEENVQNAIKHIDEAAKNGAKLI 88
Query: 91 RAPSAYN 97
P +N
Sbjct: 89 SLPECFN 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,983,096
Number of Sequences: 539616
Number of extensions: 1342793
Number of successful extensions: 4836
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4787
Number of HSP's gapped (non-prelim): 64
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)