Query 038029
Match_columns 101
No_of_seqs 105 out of 137
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uky_C Nuclear CAP-binding pro 78.4 0.56 1.9E-05 25.7 0.5 7 87-93 26-32 (32)
2 2ygg_A Sodium/hydrogen exchang 60.5 0.49 1.7E-05 30.3 -2.7 10 89-99 24-33 (70)
3 2e2z_A TIM15; protein import, 60.0 3.9 0.00013 27.6 1.6 13 3-15 35-47 (100)
4 1dxg_A Desulforedoxin; non-hem 35.2 13 0.00044 20.0 0.9 13 6-18 6-18 (36)
5 3ukx_C Bimax2 peptide; arm rep 31.5 18 0.00062 18.9 1.0 9 84-92 19-27 (28)
6 3l0a_A Putative exonuclease; R 31.0 12 0.0004 28.6 0.3 8 6-13 238-245 (266)
7 2adl_A CCDA; ribbon-helix-heli 29.0 23 0.00079 21.8 1.4 10 91-100 50-59 (72)
8 2vqz_A Polymerase basic protei 28.3 13 0.00045 26.9 0.1 17 4-20 45-61 (166)
9 4ic3_A E3 ubiquitin-protein li 25.7 23 0.00079 20.9 0.9 11 2-12 35-45 (74)
10 2fk4_A Protein E6; zinc bindin 24.4 21 0.0007 22.4 0.5 17 3-19 21-37 (75)
11 2ysj_A Tripartite motif-contai 24.0 23 0.0008 19.8 0.7 9 3-11 32-40 (63)
12 2yho_A E3 ubiquitin-protein li 23.9 25 0.00086 21.3 0.9 10 3-12 30-39 (79)
13 3or1_A Sulfite reductase alpha 23.4 8.5 0.00029 31.5 -1.8 10 7-16 304-313 (437)
14 3fgx_A Rbstp2171; structural g 22.7 5.5 0.00019 27.4 -2.6 10 92-101 46-55 (114)
15 3ukw_C Bimax1 peptide; arm rep 22.0 34 0.0012 17.8 1.0 9 84-92 19-27 (28)
16 1t1h_A Gspef-atpub14, armadill 21.7 29 0.001 20.1 0.8 10 3-12 20-29 (78)
17 2ysl_A Tripartite motif-contai 21.0 32 0.0011 19.6 0.9 10 3-12 32-41 (73)
18 1ic9_A TH10AOX; three stranded 20.7 31 0.0011 18.1 0.7 7 4-10 23-29 (29)
No 1
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=78.40 E-value=0.56 Score=25.73 Aligned_cols=7 Identities=71% Similarity=1.028 Sum_probs=6.1
Q ss_pred CccCCCC
Q 038029 87 EKRQRAP 93 (101)
Q Consensus 87 EKRQRvP 93 (101)
-||||||
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899998
No 2
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=60.51 E-value=0.49 Score=30.28 Aligned_cols=10 Identities=70% Similarity=0.946 Sum_probs=7.5
Q ss_pred cCCCCcccccC
Q 038029 89 RQRAPSAYNRF 99 (101)
Q Consensus 89 RQRvPSAYNRF 99 (101)
|||+|| |||.
T Consensus 24 Rqr~~S-YnRH 33 (70)
T 2ygg_A 24 RQRLRS-YNRH 33 (70)
T ss_dssp HHHHHH-HHHS
T ss_pred HHhccc-cccc
Confidence 578887 7874
No 3
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=60.00 E-value=3.9 Score=27.60 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=11.6
Q ss_pred ceeeEeCCCCCCc
Q 038029 3 MVVTVRCGHCTSL 15 (101)
Q Consensus 3 ~iVTVRCGHCtnL 15 (101)
-+|-|+|..|.|.
T Consensus 35 GvViv~C~gC~n~ 47 (100)
T 2e2z_A 35 GTVLISCPHCKVR 47 (100)
T ss_dssp SEEEEECTTTCCE
T ss_pred CEEEEEcCCCccc
Confidence 3799999999996
No 4
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=35.16 E-value=13 Score=19.98 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.8
Q ss_pred eEeCCCCCCcccc
Q 038029 6 TVRCGHCTSLLSV 18 (101)
Q Consensus 6 TVRCGHCtnLlSV 18 (101)
.-+|.+|.|+.-|
T Consensus 6 fY~C~~CGnivev 18 (36)
T 1dxg_A 6 VYKCELCGQVVKV 18 (36)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEcCCCCcEEEE
Confidence 4689999999775
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=31.52 E-value=18 Score=18.89 Aligned_cols=9 Identities=56% Similarity=1.103 Sum_probs=7.3
Q ss_pred CCCCccCCC
Q 038029 84 KPPEKRQRA 92 (101)
Q Consensus 84 rPPEKRQRv 92 (101)
-||.||.|+
T Consensus 19 dppkkrrrl 27 (28)
T 3ukx_C 19 DPPKKRRRL 27 (28)
T ss_dssp SCCSCCCCC
T ss_pred Cchhhhhcc
Confidence 489999886
No 6
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: PE4; 2.19A {Eubacterium rectale}
Probab=31.01 E-value=12 Score=28.60 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=6.8
Q ss_pred eEeCCCCC
Q 038029 6 TVRCGHCT 13 (101)
Q Consensus 6 TVRCGHCt 13 (101)
.+|||||-
T Consensus 238 p~~Cg~Cd 245 (266)
T 3l0a_A 238 PDRCELCD 245 (266)
T ss_dssp CCCCSCSH
T ss_pred CCCCCCCc
Confidence 57999996
No 7
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=28.95 E-value=23 Score=21.84 Aligned_cols=10 Identities=30% Similarity=0.394 Sum_probs=8.6
Q ss_pred CCCcccccCC
Q 038029 91 RAPSAYNRFI 100 (101)
Q Consensus 91 RvPSAYNRFI 100 (101)
.+-.|||+||
T Consensus 50 ~ai~~~n~~~ 59 (72)
T 2adl_A 50 EGMVEVARFI 59 (72)
T ss_dssp CCCCCCCCSC
T ss_pred HHHHHHHHHH
Confidence 4889999998
No 8
>2vqz_A Polymerase basic protein 2; RNA-dependent RNA polymerase, transcription, PB2 subunit, influenza virus, CAP-binding domain; HET: MGT MSE; 2.30A {Influenza a virus}
Probab=28.31 E-value=13 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.5
Q ss_pred eeeEeCCCCCCcccccc
Q 038029 4 VVTVRCGHCTSLLSVNM 20 (101)
Q Consensus 4 iVTVRCGHCtnLlSVNm 20 (101)
-.||+||.|+.+|--..
T Consensus 45 EF~~~~~~~~~ILrKa~ 61 (166)
T 2vqz_A 45 EFTMVGKRATAILRKAT 61 (166)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred eeeEehHHHHHHHHHHH
Confidence 46999999999876443
No 9
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=25.71 E-value=23 Score=20.93 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.5
Q ss_pred CceeeEeCCCC
Q 038029 2 SMVVTVRCGHC 12 (101)
Q Consensus 2 ~~iVTVRCGHC 12 (101)
.+.|+..|||-
T Consensus 35 ~~~~~~pCgH~ 45 (74)
T 4ic3_A 35 IAIVFVPCGHL 45 (74)
T ss_dssp CCEEEETTCCB
T ss_pred CCEEEcCCCCh
Confidence 36788899994
No 10
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding protein; NMR {Human papillomavirus type 16} SCOP: g.90.1.1 PDB: 2ljz_A
Probab=24.39 E-value=21 Score=22.37 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=13.2
Q ss_pred ceeeEeCCCCCCccccc
Q 038029 3 MVVTVRCGHCTSLLSVN 19 (101)
Q Consensus 3 ~iVTVRCGHCtnLlSVN 19 (101)
.-+.|||-.|-.+|+..
T Consensus 21 ~~i~IRC~~C~k~L~~~ 37 (75)
T 2fk4_A 21 SDLLIRCINCQKPLSPE 37 (75)
T ss_dssp TTSCCCCSSSCCCCCHH
T ss_pred eEEEEEhHHcCCcCCHH
Confidence 45789999998887643
No 11
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.97 E-value=23 Score=19.77 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=6.0
Q ss_pred ceeeEeCCC
Q 038029 3 MVVTVRCGH 11 (101)
Q Consensus 3 ~iVTVRCGH 11 (101)
+.|+..|||
T Consensus 32 ~p~~~~CgH 40 (63)
T 2ysj_A 32 KPVTIDCGH 40 (63)
T ss_dssp SCEECTTSS
T ss_pred CeEEeCCCC
Confidence 345667888
No 12
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=23.88 E-value=25 Score=21.30 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=8.2
Q ss_pred ceeeEeCCCC
Q 038029 3 MVVTVRCGHC 12 (101)
Q Consensus 3 ~iVTVRCGHC 12 (101)
++|++.|||=
T Consensus 30 ~~v~~pCgH~ 39 (79)
T 2yho_A 30 NSTFCPCGHT 39 (79)
T ss_dssp CEEEETTCBC
T ss_pred cEEEECCCCH
Confidence 6788999994
No 13
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=23.42 E-value=8.5 Score=31.48 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=8.3
Q ss_pred EeCCCCCCcc
Q 038029 7 VRCGHCTSLL 16 (101)
Q Consensus 7 VRCGHCtnLl 16 (101)
+|||||-|.-
T Consensus 304 ~~Cg~Ci~~C 313 (437)
T 3or1_A 304 TRCMHCINTM 313 (437)
T ss_dssp CCCSHHHHHC
T ss_pred CchhhhHhhC
Confidence 7999998854
No 14
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=22.70 E-value=5.5 Score=27.44 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=8.4
Q ss_pred CCcccccCCC
Q 038029 92 APSAYNRFIK 101 (101)
Q Consensus 92 vPSAYNRFIK 101 (101)
.|.+|||||+
T Consensus 46 t~~~YnRyi~ 55 (114)
T 3fgx_A 46 KVSDISRFTK 55 (114)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5789999985
No 15
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=22.04 E-value=34 Score=17.79 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=7.1
Q ss_pred CCCCccCCC
Q 038029 84 KPPEKRQRA 92 (101)
Q Consensus 84 rPPEKRQRv 92 (101)
.||.||.|+
T Consensus 19 epprkrkrl 27 (28)
T 3ukw_C 19 EPPRKRKRL 27 (28)
T ss_dssp SCCSSCCCC
T ss_pred Ccchhhhcc
Confidence 488899885
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=21.65 E-value=29 Score=20.14 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=7.3
Q ss_pred ceeeEeCCCC
Q 038029 3 MVVTVRCGHC 12 (101)
Q Consensus 3 ~iVTVRCGHC 12 (101)
+-|+..|||-
T Consensus 20 ~Pv~~~CgH~ 29 (78)
T 1t1h_A 20 DPVIVSTGQT 29 (78)
T ss_dssp SEEEETTTEE
T ss_pred CCEEcCCCCe
Confidence 5577789883
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=32 Score=19.58 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=6.6
Q ss_pred ceeeEeCCCC
Q 038029 3 MVVTVRCGHC 12 (101)
Q Consensus 3 ~iVTVRCGHC 12 (101)
+.|+..|||-
T Consensus 32 ~~~~~~CgH~ 41 (73)
T 2ysl_A 32 KPVTIDCGHN 41 (73)
T ss_dssp SEEECTTCCE
T ss_pred CeEEcCCCCh
Confidence 4566688883
No 18
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=20.75 E-value=31 Score=18.07 Aligned_cols=7 Identities=57% Similarity=1.165 Sum_probs=5.5
Q ss_pred eeeEeCC
Q 038029 4 VVTVRCG 10 (101)
Q Consensus 4 iVTVRCG 10 (101)
.+||||.
T Consensus 23 aitvrce 29 (29)
T 1ic9_A 23 AITVRCE 29 (29)
T ss_dssp TCEEECC
T ss_pred eeEEecC
Confidence 5799993
Done!