Query 038029
Match_columns 101
No_of_seqs 105 out of 137
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 11:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038029.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038029hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d8ya2 g.39.1.3 (A:44-85) Epl 59.8 1.5 0.00011 23.9 1.0 12 8-19 1-12 (42)
2 d1lv3a_ g.39.1.9 (A:) Hypothet 48.0 3.6 0.00026 24.1 1.4 15 1-15 1-15 (65)
3 d1twfi1 g.41.3.1 (I:1-49) RBP9 36.4 5.5 0.0004 22.3 0.9 10 8-17 6-15 (49)
4 d3c7ba1 d.58.1.5 (A:239-304) D 32.6 1.7 0.00013 25.8 -1.9 11 7-17 48-58 (66)
5 d2ewla1 g.91.1.1 (A:5-56) E7 o 32.2 8.3 0.00061 21.5 1.2 16 2-18 6-21 (52)
6 d1vzia2 g.41.5.2 (A:1-37) Desu 30.1 8.2 0.0006 20.4 0.9 13 6-18 6-18 (37)
7 d1ozza_ g.3.7.4 (A:) Defensin 28.5 3.9 0.00029 22.1 -0.7 11 10-20 30-40 (44)
8 d1dfxa2 g.41.5.2 (A:1-36) Desu 28.5 9.2 0.00067 20.1 0.9 13 6-18 6-18 (36)
9 d1dxga_ g.41.5.2 (A:) Desulfor 23.5 13 0.00094 19.5 0.9 13 6-18 6-18 (36)
10 d1ffva1 a.56.1.1 (A:82-157) Ca 22.6 8 0.00058 23.0 -0.1 14 7-20 18-31 (76)
11 d1rm6c1 a.56.1.1 (C:82-157) 4- 22.5 8 0.00059 23.0 -0.1 16 6-21 16-31 (76)
12 d1vkwa_ d.90.1.2 (A:) Putative 22.5 11 0.00082 25.8 0.7 8 91-98 153-160 (217)
13 d1fo5a_ c.47.1.1 (A:) MJ0307, 21.9 12 0.00084 20.7 0.5 10 6-15 11-20 (85)
14 d2ayja1 g.41.8.7 (A:1-56) Ribo 21.7 11 0.00078 21.6 0.3 7 8-15 38-44 (56)
15 d1twfj_ a.4.11.1 (J:) RNA poly 21.2 13 0.00098 21.6 0.7 14 3-16 1-14 (65)
16 d1nhoa_ c.47.1.1 (A:) MTH807, 20.6 13 0.00094 20.8 0.5 10 8-17 12-21 (85)
17 d1v97a1 a.56.1.1 (A:93-165) Xa 20.5 9.3 0.00068 22.5 -0.1 15 7-21 19-33 (73)
No 1
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.79 E-value=1.5 Score=23.94 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=10.7
Q ss_pred eCCCCCCccccc
Q 038029 8 RCGHCTSLLSVN 19 (101)
Q Consensus 8 RCGHCtnLlSVN 19 (101)
||-||...|++.
T Consensus 1 rC~~C~~~Ls~~ 12 (42)
T d2d8ya2 1 RCSYCNNKLSLG 12 (42)
T ss_dssp BCTTTCCBCCTT
T ss_pred CcCcCCCCccCC
Confidence 899999999875
No 2
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=48.01 E-value=3.6 Score=24.07 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=12.9
Q ss_pred CCceeeEeCCCCCCc
Q 038029 1 MSMVVTVRCGHCTSL 15 (101)
Q Consensus 1 l~~iVTVRCGHCtnL 15 (101)
|.+++||+|-.|..-
T Consensus 1 M~~~~~v~CP~C~k~ 15 (65)
T d1lv3a_ 1 MSETITVNCPTCGKT 15 (65)
T ss_dssp CCCCCEEECTTTCCE
T ss_pred CCCCceeeCCCCCCc
Confidence 567899999999875
No 3
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.43 E-value=5.5 Score=22.28 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=8.4
Q ss_pred eCCCCCCccc
Q 038029 8 RCGHCTSLLS 17 (101)
Q Consensus 8 RCGHCtnLlS 17 (101)
-|.+|+|+|.
T Consensus 6 FC~eCnNmLY 15 (49)
T d1twfi1 6 FCRDCNNMLY 15 (49)
T ss_dssp BCSSSCCBCE
T ss_pred cChhcccccc
Confidence 4999999965
No 4
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=32.59 E-value=1.7 Score=25.80 Aligned_cols=11 Identities=45% Similarity=1.059 Sum_probs=8.9
Q ss_pred EeCCCCCCccc
Q 038029 7 VRCGHCTSLLS 17 (101)
Q Consensus 7 VRCGHCtnLlS 17 (101)
|||=||-|...
T Consensus 48 vRCMHCIN~Mp 58 (66)
T d3c7ba1 48 VRCMHCINKMP 58 (66)
T ss_dssp CCCCHHHHHCT
T ss_pred CccccchhcCc
Confidence 79999988733
No 5
>d2ewla1 g.91.1.1 (A:5-56) E7 oncoprotein {Human papillomavirus type 45 [TaxId: 10593]}
Probab=32.21 E-value=8.3 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=10.9
Q ss_pred CceeeEeCCCCCCcccc
Q 038029 2 SMVVTVRCGHCTSLLSV 18 (101)
Q Consensus 2 ~~iVTVRCGHCtnLlSV 18 (101)
++||| -||.|...+-+
T Consensus 6 YrIvt-~C~~C~~~lrL 21 (52)
T d2ewla1 6 HKILC-VCCKCDGRIEL 21 (52)
T ss_dssp EEEEE-EBTTTCCEEEE
T ss_pred eEEEe-ECCCCCCEEEE
Confidence 35666 48999987543
No 6
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=30.06 E-value=8.2 Score=20.37 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=10.7
Q ss_pred eEeCCCCCCcccc
Q 038029 6 TVRCGHCTSLLSV 18 (101)
Q Consensus 6 TVRCGHCtnLlSV 18 (101)
.-||.+|.|+.-|
T Consensus 6 vYkC~~CGNiVeV 18 (37)
T d1vzia2 6 VYKCEVCGNIVEV 18 (37)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEecccCcEEEE
Confidence 3589999999775
No 7
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]}
Probab=28.52 E-value=3.9 Score=22.13 Aligned_cols=11 Identities=55% Similarity=1.005 Sum_probs=9.4
Q ss_pred CCCCCcccccc
Q 038029 10 GHCTSLLSVNM 20 (101)
Q Consensus 10 GHCtnLlSVNm 20 (101)
|||.+.+-||-
T Consensus 30 ghcgsf~nvnc 40 (44)
T d1ozza_ 30 GHCGSFANVNC 40 (44)
T ss_dssp EEEESGGGCEE
T ss_pred cccccccceee
Confidence 89999988883
No 8
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=28.46 E-value=9.2 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.961 Sum_probs=10.7
Q ss_pred eEeCCCCCCcccc
Q 038029 6 TVRCGHCTSLLSV 18 (101)
Q Consensus 6 TVRCGHCtnLlSV 18 (101)
.-||.+|.|+.-|
T Consensus 6 vYkC~~CGNiVeV 18 (36)
T d1dfxa2 6 VYKCTHCGNIVEV 18 (36)
T ss_dssp EEECTTTCCEEEC
T ss_pred EEEecccCcEEEE
Confidence 3589999999775
No 9
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=23.47 E-value=13 Score=19.45 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.6
Q ss_pred eEeCCCCCCcccc
Q 038029 6 TVRCGHCTSLLSV 18 (101)
Q Consensus 6 TVRCGHCtnLlSV 18 (101)
.-||.+|.|+.-|
T Consensus 6 vYkC~~CGNiVeV 18 (36)
T d1dxga_ 6 VYKCELCGQVVKV 18 (36)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEeccCCcEEEE
Confidence 3589999998775
No 10
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=22.59 E-value=8 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=10.7
Q ss_pred EeCCCCCCcccccc
Q 038029 7 VRCGHCTSLLSVNM 20 (101)
Q Consensus 7 VRCGHCtnLlSVNm 20 (101)
+.||.||-=.-+.+
T Consensus 18 ~QCGyCtPG~im~~ 31 (76)
T d1ffva1 18 LQCGFCTPGMLMRA 31 (76)
T ss_dssp CSSCSSHHHHHHHH
T ss_pred CcCCCcchHHHHHH
Confidence 68999998666554
No 11
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=22.50 E-value=8 Score=22.98 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=11.9
Q ss_pred eEeCCCCCCccccccC
Q 038029 6 TVRCGHCTSLLSVNMM 21 (101)
Q Consensus 6 TVRCGHCtnLlSVNm~ 21 (101)
-+.||.||-=.-+.+.
T Consensus 16 a~QCGyCtPG~im~~~ 31 (76)
T d1rm6c1 16 GTQCGFCTPGMIMASE 31 (76)
T ss_dssp CCSSCSSHHHHHHHHH
T ss_pred CCcCCCCchHHHHHHH
Confidence 3689999986666654
No 12
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]}
Probab=22.49 E-value=11 Score=25.76 Aligned_cols=8 Identities=75% Similarity=0.870 Sum_probs=6.5
Q ss_pred CCCccccc
Q 038029 91 RAPSAYNR 98 (101)
Q Consensus 91 RvPSAYNR 98 (101)
.+|||+||
T Consensus 153 lAPSa~N~ 160 (217)
T d1vkwa_ 153 LAPSALNR 160 (217)
T ss_dssp TSCCGGGC
T ss_pred hCCchhcC
Confidence 58899986
No 13
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.86 E-value=12 Score=20.72 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.7
Q ss_pred eEeCCCCCCc
Q 038029 6 TVRCGHCTSL 15 (101)
Q Consensus 6 TVRCGHCtnL 15 (101)
+-=||||-.+
T Consensus 11 a~wC~~C~~~ 20 (85)
T d1fo5a_ 11 SPMCPHCPAA 20 (85)
T ss_dssp CCCSSCCCTH
T ss_pred CCCCcChHhh
Confidence 3469999876
No 14
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.70 E-value=11 Score=21.56 Aligned_cols=7 Identities=57% Similarity=1.046 Sum_probs=4.6
Q ss_pred eCCCCCCc
Q 038029 8 RCGHCTSL 15 (101)
Q Consensus 8 RCGHCtnL 15 (101)
|||| +||
T Consensus 38 KCg~-~nL 44 (56)
T d2ayja1 38 RCHS-TNL 44 (56)
T ss_dssp TTCC-CCE
T ss_pred cCCC-CCc
Confidence 5777 665
No 15
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.22 E-value=13 Score=21.55 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=12.1
Q ss_pred ceeeEeCCCCCCcc
Q 038029 3 MVVTVRCGHCTSLL 16 (101)
Q Consensus 3 ~iVTVRCGHCtnLl 16 (101)
+|+.|||=-|.+++
T Consensus 1 MiIPVRCFTCgkvi 14 (65)
T d1twfj_ 1 MIVPVRCFSCGKVV 14 (65)
T ss_dssp CCCCSBCTTTCCBC
T ss_pred CCCCcccCCCCcCh
Confidence 47889999999985
No 16
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.57 E-value=13 Score=20.79 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=7.8
Q ss_pred eCCCCCCccc
Q 038029 8 RCGHCTSLLS 17 (101)
Q Consensus 8 RCGHCtnLlS 17 (101)
-||||-.+..
T Consensus 12 wC~~C~~~~p 21 (85)
T d1nhoa_ 12 TCPYCPMAIE 21 (85)
T ss_dssp SSCCSTTHHH
T ss_pred CCcchHHHHH
Confidence 5999988743
No 17
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.51 E-value=9.3 Score=22.50 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=11.9
Q ss_pred EeCCCCCCccccccC
Q 038029 7 VRCGHCTSLLSVNMM 21 (101)
Q Consensus 7 VRCGHCtnLlSVNm~ 21 (101)
+.||.||.=.-|.+.
T Consensus 19 ~QCGyCtPG~vm~~~ 33 (73)
T d1v97a1 19 SQCGFCTPGIVMSMY 33 (73)
T ss_dssp CSSCSSHHHHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 689999987777664
Done!