BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038030
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 87/143 (60%)
Query: 1 MVGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQ 60
M+G+NLP +V++LY NNI RMRLYDPN+ AL+A R SN +V+ +P D++ ++S
Sbjct: 7 MLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNP 66
Query: 61 AEANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIK 120
+ A W IAVGNE PG D AQY++P MRNI NA+ A L +QIK
Sbjct: 67 SAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIK 126
Query: 121 VSTAIELGVLDAFSPPTTAGGGS 143
VSTA++ GVL PP+ S
Sbjct: 127 VSTAVDTGVLGTSYPPSAGAFSS 149
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Query: 149 SESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQGSPKKP-RPIETYIFAIFDEN 201
SESGWP+AGG GA + NA+TYN NLI+HV G+P++P + IE YIF +F+EN
Sbjct: 235 SESGWPSAGG-GAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNEN 287
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Query: 1 MVGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQ 60
M G+NLP +VIALY ++NI RMR+YDPN+ LEA RGSN E++ G+PN DL+ +++
Sbjct: 8 MQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSLTNP- 66
Query: 61 AEANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDD----FAQYLVPTMRNIQNAIDGANLG 116
+ A +W IAVGNE P + AQ+++P MRNI +AI A L
Sbjct: 67 SNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQ 126
Query: 117 SQIKVSTAIELGVLDAFSPPT 137
QIKVSTAI+L ++ PP+
Sbjct: 127 DQIKVSTAIDLTLVGNSYPPS 147
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 4/76 (5%)
Query: 128 GVLDA-FSPPTTAGGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQGSPKK 186
LDA +S A GGSL++V+SESGWP+AG A DN +TY +NLIQHVK+G+PK+
Sbjct: 217 ATLDALYSALERASGGSLEVVVSESGWPSAGAFAA--TFDNGRTYLSNLIQHVKRGTPKR 274
Query: 187 P-RPIETYIFAIFDEN 201
P R IETY+FA+FDEN
Sbjct: 275 PKRAIETYLFAMFDEN 290
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 2 VGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQA 61
+ +NLPS DVI LYN NNI++MR+Y P+ A +GSN E++ +PN DL +++ +
Sbjct: 10 IANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALANP-S 68
Query: 62 EANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDD---FAQYLVPTMRNIQNAIDGANLGSQ 118
AN W IAVGNE PG + +A+++ P M NI NA+ A L +Q
Sbjct: 69 NANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQ 128
Query: 119 IKVSTAIELGVLDAFSPP 136
IKVST+ G+L PP
Sbjct: 129 IKVSTSTYSGLLTNTYPP 146
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 5/65 (7%)
Query: 140 GGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQ--GSPKKP-RPIETYIFA 196
GG +++I++S SGWP+ G A + NA+TY NLI HVK+ G+PKKP + IETY+FA
Sbjct: 226 GGQNIEIIVSASGWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFA 283
Query: 197 IFDEN 201
+FDEN
Sbjct: 284 MFDEN 288
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 2 VGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQA 61
+ +NLPS DVI LYN NNI++MR+Y P+ A +GSN E++ +PN DL +++ +
Sbjct: 10 IANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALANP-S 68
Query: 62 EANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDD---FAQYLVPTMRNIQNAIDGANLGSQ 118
AN W IAVGNE PG + +A+++ P M NI NA+ A L +Q
Sbjct: 69 NANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQ 128
Query: 119 IKVSTAIELGVLDAFSPP 136
IKVST+ G+L PP
Sbjct: 129 IKVSTSTYSGLLTNTYPP 146
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Query: 140 GGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQ--GSPKKP-RPIETYIFA 196
GG +++I++SESGWP+ G A + NA+TY NLI HVK+ G+PKKP + IETY+FA
Sbjct: 226 GGQNIEIIVSESGWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFA 283
Query: 197 IFDEN 201
+FDEN
Sbjct: 284 MFDEN 288
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 1 MVGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQ 60
M +NLP+ V++++ N I+ MRLY PN+ AL+A G+ V+ G PND L ++++
Sbjct: 7 MSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASP 66
Query: 61 AEANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIK 120
A A +W + VGNE G + LVP M+N+ A+ A LG IK
Sbjct: 67 AAAASWVKSNIQAYPKVSFRY-VCVGNEVAGGAT--RNLVPAMKNVHGALVAAGLG-HIK 122
Query: 121 VSTAIELGVLDAFSPPT 137
V+T++ +L FSPP+
Sbjct: 123 VTTSVSQAILGVFSPPS 139
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 140 GGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFAIFD 199
GG S+ +V+SESGWP+ GG A NA+ YN +LI HV +G+P+ P IETYIFA+F+
Sbjct: 222 GGSSVKLVVSESGWPSGGGTAATP--ANARFYNQHLINHVGRGTPRHPGAIETYIFAMFN 279
Query: 200 EN 201
EN
Sbjct: 280 EN 281
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 123 TAIELGVLDA-FSPPTTAGGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQ 181
T++ ++DA ++ AG ++ +V+SESGWP+AGG A + NA+TYN LI HV
Sbjct: 203 TSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGGFAA--SAGNARTYNQGLINHVGG 260
Query: 182 GSPKKPRPIETYIFAIFDEN 201
G+PKK +ETYIFA+F+EN
Sbjct: 261 GTPKKREALETYIFAMFNEN 280
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 1 MVGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQ 60
++G+NLPS+ DV+ LY I MR+Y + +AL A R S ++ + ND L I+++
Sbjct: 7 VIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAAST 66
Query: 61 AEANTWXXXXXXXXXXXXXXXCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIK 120
+ A +W IA GNE + G Q ++P MRN+ NA A IK
Sbjct: 67 SNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGA--TQSILPAMRNL-NAALSAAGLGAIK 123
Query: 121 VSTAIELGVLDAFSPPT 137
VST+I + PP+
Sbjct: 124 VSTSIRFDEVANSFPPS 140
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGAN G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGANCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 99 LVPTMRNIQ-NAIDGANLGSQIKVSTAIELGVLDAFSPPTTAGGGSLDIVIS----ESGW 153
L P + +IQ N DGA G ++ S + FS PT GGG+ +I+ E+ +
Sbjct: 17 LFPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFS-PTLGGGGADGSIIAFDTIETNF 75
Query: 154 PAAGGDGALTNVDNAKTYNNNL 175
PA G + + +N+
Sbjct: 76 PANAGIDEIVSAQKPFVAKHNI 97
>pdb|1ODT|C Chain C, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
pdb|1ODT|H Chain H, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
Length = 318
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 100 VPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAFSPPTTA 139
V M+ + + D NL ++KV + +G++D +PP+T
Sbjct: 239 VQAMKTL-SYFDIMNLADRVKVPVLMSIGLIDKVTPPSTV 277
>pdb|1L7A|A Chain A, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
pdb|1L7A|B Chain B, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
Length = 318
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 100 VPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAFSPPTTA 139
V M+ + + D NL ++KV + +G++D +PP+T
Sbjct: 239 VQAMKTL-SYFDIMNLADRVKVPVLMSIGLIDKVTPPSTV 277
>pdb|1ODS|A Chain A, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|B Chain B, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|C Chain C, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|D Chain D, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|E Chain E, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|F Chain F, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|G Chain G, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|H Chain H, Cephalosporin C Deacetylase From Bacillus Subtilis
Length = 318
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 100 VPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAFSPPTTA 139
V M+ + + D NL ++KV + +G++D +PP+T
Sbjct: 239 VQAMKTL-SYFDIMNLAYRVKVPVLMSIGLIDKVTPPSTV 277
>pdb|3M83|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M83|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M83|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M83|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M83|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M83|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.12 A Resolution (Paraoxon
Inhibitor Complex Structure)
pdb|3M82|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
pdb|3M82|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
pdb|3M82|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
pdb|3M82|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
pdb|3M82|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
pdb|3M82|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.40 A Resolution (Pmsf Inhibitor
Complex Structure)
Length = 337
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 108 NAIDGANLGSQIKVSTAIELGVLDAFSPPTTA 139
+ DG N ++ K+ +G++D PP+T
Sbjct: 263 SYFDGVNFAARAKIPALFSVGLMDNICPPSTV 294
>pdb|3M81|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
Length = 337
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 108 NAIDGANLGSQIKVSTAIELGVLDAFSPPTTA 139
+ DG N ++ K+ +G++D PP+T
Sbjct: 263 SYFDGVNFAARAKIPALFSVGLMDNICPPSTV 294
>pdb|1V9C|A Chain A, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
pdb|1V9C|B Chain B, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
Length = 218
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 153 WPAAGGDGALTNVDNAKTYNNNLIQHVKQGS 183
W DGA+ V NA T+ L++ ++QG+
Sbjct: 121 WEKGLLDGAIVGVGNAPTFLLALVEAIRQGA 151
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 100 VPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAFSPP----TTAGGGSLDIVISESGW 153
+P + + A++ +K LG++DA PP TTA +LDIV W
Sbjct: 154 LPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPW 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,081,519
Number of Sequences: 62578
Number of extensions: 239405
Number of successful extensions: 479
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 37
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)