Query 038030
Match_columns 202
No_of_seqs 121 out of 1100
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:50:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.1E-55 8.8E-60 381.0 18.9 199 1-202 7-285 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.8E-35 3.8E-40 247.9 17.0 181 6-201 59-285 (305)
3 PF07745 Glyco_hydro_53: Glyco 98.8 1.3E-07 2.8E-12 83.5 13.4 166 9-180 26-281 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.3 4.7E-06 1E-10 72.7 10.7 108 14-123 60-181 (314)
5 COG3867 Arabinogalactan endo-1 97.9 0.00024 5.2E-09 61.8 11.6 166 9-179 65-326 (403)
6 PF00150 Cellulase: Cellulase 97.6 0.00095 2.1E-08 56.0 11.1 115 8-122 22-171 (281)
7 PRK10150 beta-D-glucuronidase; 97.6 0.011 2.5E-07 56.1 19.2 179 13-199 319-557 (604)
8 PF02836 Glyco_hydro_2_C: Glyc 95.4 0.13 2.9E-06 44.3 9.3 82 8-89 34-132 (298)
9 PRK10340 ebgA cryptic beta-D-g 92.7 3.3 7.2E-05 42.1 14.1 140 8-158 353-519 (1021)
10 PRK09525 lacZ beta-D-galactosi 89.9 16 0.00035 37.3 15.7 157 7-177 368-559 (1027)
11 PF11790 Glyco_hydro_cc: Glyco 88.6 1.1 2.4E-05 37.6 5.6 46 144-196 166-211 (239)
12 smart00633 Glyco_10 Glycosyl h 87.3 13 0.00027 31.4 11.3 32 142-179 181-212 (254)
13 smart00481 POLIIIAc DNA polyme 84.3 3.5 7.5E-05 27.2 5.2 43 7-49 15-62 (67)
14 PF02449 Glyco_hydro_42: Beta- 81.6 22 0.00047 31.6 10.8 82 11-92 14-141 (374)
15 TIGR00505 ribA GTP cyclohydrol 73.9 5.7 0.00012 32.3 4.4 33 13-45 131-163 (191)
16 PRK00393 ribA GTP cyclohydrola 73.2 6 0.00013 32.4 4.3 33 13-45 134-166 (197)
17 PF02055 Glyco_hydro_30: O-Gly 72.8 23 0.0005 33.3 8.6 140 39-179 166-367 (496)
18 cd02875 GH18_chitobiase Chitob 72.2 36 0.00079 30.3 9.5 100 20-122 55-157 (358)
19 cd00641 GTP_cyclohydro2 GTP cy 65.3 11 0.00024 30.7 4.3 33 13-45 133-165 (193)
20 COG1433 Uncharacterized conser 63.2 18 0.00039 27.5 4.8 40 10-49 55-94 (121)
21 PF14871 GHL6: Hypothetical gl 55.9 33 0.00072 26.2 5.3 42 8-49 1-65 (132)
22 PRK13586 1-(5-phosphoribosyl)- 55.3 63 0.0014 27.0 7.3 70 7-92 30-108 (232)
23 PRK08815 GTP cyclohydrolase; P 55.2 19 0.0004 32.7 4.3 33 13-45 305-337 (375)
24 TIGR03632 bact_S11 30S ribosom 55.0 35 0.00077 25.2 5.1 36 10-45 50-90 (108)
25 cd02874 GH18_CFLE_spore_hydrol 55.0 39 0.00084 29.1 6.2 84 30-115 47-138 (313)
26 PRK09318 bifunctional 3,4-dihy 54.0 20 0.00044 32.6 4.3 36 13-48 320-355 (387)
27 PF00834 Ribul_P_3_epim: Ribul 52.2 1.3E+02 0.0028 24.6 9.0 96 9-121 69-171 (201)
28 PRK09311 bifunctional 3,4-dihy 51.9 23 0.0005 32.4 4.4 34 12-45 338-371 (402)
29 PRK09319 bifunctional 3,4-dihy 51.1 23 0.00051 33.7 4.4 33 13-45 343-375 (555)
30 PLN02831 Bifunctional GTP cycl 50.6 24 0.00052 32.8 4.3 33 13-45 373-405 (450)
31 PF02057 Glyco_hydro_59: Glyco 50.6 18 0.00038 35.2 3.5 101 64-177 160-282 (669)
32 PRK13347 coproporphyrinogen II 50.4 35 0.00077 31.3 5.4 101 10-123 152-288 (453)
33 cd04723 HisA_HisF Phosphoribos 49.4 1.1E+02 0.0024 25.4 7.9 45 8-52 36-89 (233)
34 PRK14114 1-(5-phosphoribosyl)- 48.6 1E+02 0.0022 26.0 7.5 70 7-92 30-108 (241)
35 PF03102 NeuB: NeuB family; I 48.6 50 0.0011 28.0 5.7 54 10-67 79-135 (241)
36 COG0807 RibA GTP cyclohydrolas 48.2 32 0.00069 28.3 4.3 38 13-50 133-170 (193)
37 COG1986 Inosine/xanthosine tri 48.0 1.4E+02 0.0031 24.2 7.8 62 42-113 2-64 (175)
38 TIGR03628 arch_S11P archaeal r 47.0 54 0.0012 24.6 5.0 36 10-45 53-101 (114)
39 COG3858 Predicted glycosyl hyd 46.3 75 0.0016 29.3 6.6 86 29-116 148-243 (423)
40 PF13549 ATP-grasp_5: ATP-gras 46.0 43 0.00093 28.0 4.8 51 3-53 6-58 (222)
41 PRK13587 1-(5-phosphoribosyl)- 45.7 1.8E+02 0.0038 24.3 10.2 70 7-92 31-111 (234)
42 PF00232 Glyco_hydro_1: Glycos 45.3 5.9 0.00013 36.5 -0.5 40 10-49 61-120 (455)
43 cd06545 GH18_3CO4_chitinase Th 45.2 70 0.0015 26.7 6.1 81 32-115 50-133 (253)
44 cd00854 NagA N-acetylglucosami 45.0 37 0.0008 30.2 4.6 44 6-50 145-194 (374)
45 TIGR03356 BGL beta-galactosida 44.9 32 0.00069 31.5 4.2 39 11-49 58-115 (427)
46 PF02811 PHP: PHP domain; Int 44.5 45 0.00096 25.4 4.5 44 6-49 15-63 (175)
47 PHA01735 hypothetical protein 44.0 16 0.00035 25.1 1.6 27 57-91 32-58 (76)
48 PRK14024 phosphoribosyl isomer 43.7 1.2E+02 0.0027 25.2 7.4 71 6-92 31-110 (241)
49 PRK07198 hypothetical protein; 43.1 23 0.00049 32.5 2.8 37 12-48 337-374 (418)
50 PRK05074 inosine/xanthosine tr 42.5 1.8E+02 0.0038 23.5 7.7 62 42-113 3-67 (173)
51 PF02579 Nitro_FeMo-Co: Dinitr 42.5 1.1E+02 0.0023 20.9 6.1 41 9-49 42-82 (94)
52 PF00411 Ribosomal_S11: Riboso 42.0 55 0.0012 24.1 4.4 37 10-46 50-91 (110)
53 PRK09607 rps11p 30S ribosomal 41.6 72 0.0016 24.7 5.1 36 10-45 60-108 (132)
54 CHL00041 rps11 ribosomal prote 41.2 78 0.0017 23.7 5.1 36 10-45 63-103 (116)
55 PF00977 His_biosynth: Histidi 40.4 49 0.0011 27.5 4.4 71 6-92 28-108 (229)
56 PF06117 DUF957: Enterobacteri 39.1 81 0.0018 21.3 4.3 42 60-113 10-55 (65)
57 cd00598 GH18_chitinase-like Th 39.0 79 0.0017 25.0 5.3 82 33-115 54-142 (210)
58 KOG0078 GTP-binding protein SE 39.0 87 0.0019 26.1 5.5 64 23-92 62-130 (207)
59 cd03412 CbiK_N Anaerobic cobal 38.0 1.4E+02 0.003 22.4 6.2 21 6-26 55-75 (127)
60 PRK05309 30S ribosomal protein 38.0 93 0.002 23.7 5.2 36 10-45 67-107 (128)
61 PRK13511 6-phospho-beta-galact 38.0 47 0.001 30.8 4.2 16 141-156 365-381 (469)
62 TIGR00640 acid_CoA_mut_C methy 37.4 1.2E+02 0.0026 23.0 5.8 12 32-43 44-55 (132)
63 PF13756 Stimulus_sens_1: Stim 37.2 24 0.00052 26.2 1.8 26 8-33 2-30 (112)
64 cd06418 GH25_BacA-like BacA is 36.4 2.4E+02 0.0053 23.2 12.4 108 6-116 20-143 (212)
65 PRK03941 NTPase; Reviewed 35.8 2.3E+02 0.0051 22.8 7.8 61 42-112 1-61 (174)
66 smart00636 Glyco_18 Glycosyl h 35.7 1.7E+02 0.0037 25.2 7.2 79 34-113 57-142 (334)
67 PRK01170 phosphopantetheine ad 35.3 2.2E+02 0.0048 25.2 7.8 96 6-113 96-211 (322)
68 COG4782 Uncharacterized protei 35.3 81 0.0018 28.6 5.1 52 138-196 142-197 (377)
69 cd02071 MM_CoA_mut_B12_BD meth 34.3 1.9E+02 0.0041 21.3 6.5 11 95-105 112-122 (122)
70 COG0635 HemN Coproporphyrinoge 33.6 1.5E+02 0.0031 27.2 6.6 104 10-122 137-272 (416)
71 PRK06552 keto-hydroxyglutarate 33.5 2.8E+02 0.006 22.9 10.3 84 8-111 118-210 (213)
72 PHA02754 hypothetical protein; 33.5 35 0.00076 22.7 1.9 27 97-123 14-41 (67)
73 PRK13585 1-(5-phosphoribosyl)- 33.1 2.2E+02 0.0048 23.3 7.3 43 7-49 32-84 (241)
74 TIGR01182 eda Entner-Doudoroff 33.0 2.8E+02 0.0061 22.8 9.8 65 8-92 110-182 (204)
75 PRK07379 coproporphyrinogen II 32.8 2.1E+02 0.0045 25.9 7.5 26 97-123 227-252 (400)
76 COG5016 Pyruvate/oxaloacetate 32.8 69 0.0015 29.6 4.2 41 9-49 96-146 (472)
77 PRK09936 hypothetical protein; 32.6 82 0.0018 27.7 4.6 103 9-111 37-170 (296)
78 COG4213 XylF ABC-type xylose t 31.3 1.3E+02 0.0029 26.8 5.7 77 31-125 175-251 (341)
79 PTZ00090 40S ribosomal protein 30.9 1E+02 0.0023 25.9 4.7 36 11-46 171-210 (233)
80 PLN02424 ketopantoate hydroxym 30.6 1.6E+02 0.0035 26.3 6.1 44 8-51 111-163 (332)
81 TIGR00734 hisAF_rel hisA/hisF 30.5 2.7E+02 0.0058 22.9 7.3 71 7-92 36-114 (221)
82 PLN02446 (5-phosphoribosyl)-5- 29.5 3.7E+02 0.008 23.2 8.7 43 7-49 43-91 (262)
83 PLN02998 beta-glucosidase 28.7 76 0.0016 29.8 4.0 55 141-199 390-446 (497)
84 PRK07135 dnaE DNA polymerase I 28.6 1.1E+02 0.0024 31.3 5.3 44 6-49 18-66 (973)
85 PRK00448 polC DNA polymerase I 28.2 1.2E+02 0.0026 32.5 5.6 46 4-49 347-397 (1437)
86 PTZ00129 40S ribosomal protein 28.1 1.5E+02 0.0032 23.4 4.9 37 10-46 79-128 (149)
87 PF14488 DUF4434: Domain of un 27.9 3E+02 0.0066 21.7 8.7 19 32-50 69-87 (166)
88 PLN02814 beta-glucosidase 27.8 76 0.0017 29.8 3.9 55 141-199 385-441 (504)
89 TIGR03569 NeuB_NnaB N-acetylne 27.6 2.5E+02 0.0054 24.9 6.9 55 10-68 99-156 (329)
90 PF01081 Aldolase: KDPG and KH 26.7 2.3E+02 0.005 23.2 6.1 38 8-46 110-153 (196)
91 KOG0093 GTPase Rab3, small G p 26.3 2E+02 0.0043 23.1 5.4 80 24-115 72-158 (193)
92 KOG1411 Aspartate aminotransfe 26.0 90 0.0019 28.4 3.7 105 7-111 215-353 (427)
93 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.0 1.8E+02 0.0039 24.8 5.6 88 13-110 97-191 (275)
94 COG5014 Predicted Fe-S oxidore 25.7 91 0.002 25.6 3.4 29 3-31 70-102 (228)
95 COG3325 ChiA Chitinase [Carboh 25.6 2.1E+02 0.0046 26.6 6.1 91 33-124 116-223 (441)
96 PRK07114 keto-hydroxyglutarate 25.3 4E+02 0.0087 22.2 9.7 67 8-92 121-194 (222)
97 TIGR01162 purE phosphoribosyla 24.7 1.1E+02 0.0024 24.2 3.8 46 4-49 9-61 (156)
98 cd06547 GH85_ENGase Endo-beta- 24.7 2E+02 0.0044 25.5 5.8 86 29-119 47-144 (339)
99 cd02873 GH18_IDGF The IDGF's ( 24.7 2.3E+02 0.005 25.7 6.3 21 95-115 167-187 (413)
100 PLN02849 beta-glucosidase 24.5 1E+02 0.0022 29.0 4.0 55 141-199 383-441 (503)
101 PRK01033 imidazole glycerol ph 24.2 2.6E+02 0.0057 23.5 6.2 71 6-92 29-109 (258)
102 PF04909 Amidohydro_2: Amidohy 23.8 2.6E+02 0.0056 22.5 6.1 35 15-49 93-138 (273)
103 PRK05672 dnaE2 error-prone DNA 23.2 1.6E+02 0.0034 30.5 5.3 44 6-49 20-68 (1046)
104 PRK02261 methylaspartate mutas 22.8 3.1E+02 0.0068 20.8 5.9 30 14-44 25-57 (137)
105 PRK09532 DNA polymerase III su 22.6 1.7E+02 0.0036 29.7 5.3 42 7-48 19-65 (874)
106 KOG2263 Methionine synthase II 22.3 6.4E+02 0.014 24.2 8.6 113 5-126 185-330 (765)
107 PLN02490 MPBQ/MSBQ methyltrans 22.0 1.2E+02 0.0025 27.1 3.8 43 6-48 234-276 (340)
108 PF02254 TrkA_N: TrkA-N domain 22.0 2.6E+02 0.0056 19.7 5.1 39 10-49 11-49 (116)
109 PRK00124 hypothetical protein; 21.9 81 0.0018 24.9 2.4 48 25-72 2-66 (151)
110 cd00851 MTH1175 This uncharact 21.9 2E+02 0.0044 19.8 4.4 40 10-49 53-92 (103)
111 PRK09140 2-dehydro-3-deoxy-6-p 21.6 4.5E+02 0.0097 21.4 8.9 83 8-110 113-203 (206)
112 TIGR00007 phosphoribosylformim 21.4 4.4E+02 0.0096 21.3 8.0 69 8-92 29-107 (230)
113 TIGR00735 hisF imidazoleglycer 21.1 4.4E+02 0.0095 22.0 7.0 70 7-92 30-109 (254)
114 COG2176 PolC DNA polymerase II 21.1 2E+02 0.0042 30.5 5.4 46 4-49 349-399 (1444)
115 TIGR00559 pdxJ pyridoxine 5'-p 20.9 1.9E+02 0.004 24.7 4.5 16 33-48 115-130 (237)
116 KOG0524 Pyruvate dehydrogenase 20.6 60 0.0013 28.5 1.5 43 142-184 287-332 (359)
117 TIGR00452 methyltransferase, p 20.4 1.1E+02 0.0024 26.9 3.3 26 5-30 250-275 (314)
118 PF08002 DUF1697: Protein of u 20.1 1E+02 0.0022 23.6 2.6 26 3-28 15-40 (137)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.1e-55 Score=380.99 Aligned_cols=199 Identities=47% Similarity=0.799 Sum_probs=164.5
Q ss_pred CCCCCCCChHHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceE
Q 038030 1 MVGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKF 80 (202)
Q Consensus 1 ~~~~~lps~~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i 80 (202)
|+|||||+|.+|++|||+++|++||||++|+++|+|++++|++|++|++|++++.++.++.+|..|+++||.+|+|.++|
T Consensus 7 ~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~~~~~~i 86 (310)
T PF00332_consen 7 RVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPYLPAVNI 86 (310)
T ss_dssp --SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTCTTTSEE
T ss_pred CccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccccCcccce
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeeeeeeeceeccCCCC------------------------
Q 038030 81 KCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAFSPP------------------------ 136 (202)
Q Consensus 81 ~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst~~~~~~l~~~~pp------------------------ 136 (202)
++|+||||++...... .|+|+|+++|++|.+.||+++|||+|+++++++.++|||
T Consensus 87 ~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~ 165 (310)
T PF00332_consen 87 RYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTN 165 (310)
T ss_dssp EEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT
T ss_pred eeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccC
Confidence 9999999999865422 899999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------CCCCCCCCcEEEccccCCCCCCCCC
Q 038030 137 -------------------------------------------------------TTAGGGSLDIVISESGWPAAGGDGA 161 (202)
Q Consensus 137 -------------------------------------------------------~~~g~~~~~vvV~ETGWPs~G~~~~ 161 (202)
+++|+++++|+|+||||||+|+.+
T Consensus 166 spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~- 244 (310)
T PF00332_consen 166 SPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPG- 244 (310)
T ss_dssp --EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSSTT-
T ss_pred CCceeccchhhhccCCcccCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCCCC-
Confidence 778889999999999999999977
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCC-CceEEEEEeecCCC
Q 038030 162 LTNVDNAKTYNNNLIQHVKQGSPKKPR-PIETYIFAIFDENG 202 (202)
Q Consensus 162 ~as~~na~~y~~~~~~~~~~Gtp~rp~-~~~~y~F~~Fden~ 202 (202)
|+.+||+.|++++++|+.+|||+||+ .+++|||||||||.
T Consensus 245 -a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~ 285 (310)
T PF00332_consen 245 -ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENW 285 (310)
T ss_dssp -CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TT
T ss_pred -CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcC
Confidence 99999999999999999999999999 99999999999984
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=247.92 Aligned_cols=181 Identities=21% Similarity=0.352 Sum_probs=147.3
Q ss_pred CCChHHHHHHHHh-CCCC-eEEEecCCh----HHHHHhhcCCCeEEecCCCc-hhHHhhhhHHHHHHHHHHhhhhccCCc
Q 038030 6 LPSKPDVIALYNQ-NNIR-RMRLYDPNR----EALEAFRGSNFEVMPGLPND-DLRRISSTQAEANTWVQENVQNFVNNV 78 (202)
Q Consensus 6 lps~~~v~~llk~-~~~~-~vRiY~~d~----~vl~A~~~~glkv~lgv~n~-~~~~~a~~~~~a~~wv~~~v~~~~~~~ 78 (202)
-++.+|+..+|.. ..++ .||+|++|| ++++|+...|+||+||||.. ++. ...++-+...++++..++
T Consensus 59 CKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~------~~~~~til~ay~~~~~~d 132 (305)
T COG5309 59 CKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH------DAVEKTILSAYLPYNGWD 132 (305)
T ss_pred CcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh------hhHHHHHHHHHhccCCCC
Confidence 4788999998865 4444 999999887 47789999999999999963 332 122334556678888888
Q ss_pred eEEEEEecCCCCCCCC-cHhhHHHHHHHHHHHHHhCCCCCCeeeeeeeeeceeccC--------------CCC-------
Q 038030 79 KFKCIAVGNEAKPGDD-FAQYLVPTMRNIQNAIDGANLGSQIKVSTAIELGVLDAF--------------SPP------- 136 (202)
Q Consensus 79 ~i~~I~VGNE~l~~~~-~~~~l~~~i~~v~~aL~~~gl~~~I~Vst~~~~~~l~~~--------------~pp------- 136 (202)
.|.+|+||||+|+|++ ++++|+.+|..||++|+.+|+++ ||+|+++|.++.++ +|.
T Consensus 133 ~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~np~l~~~SDfia~N~~aYwd~~~~a 210 (305)
T COG5309 133 DVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVINNPELCQASDFIAANAHAYWDGQTVA 210 (305)
T ss_pred ceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeCChHHhhhhhhhhcccchhccccchh
Confidence 9999999999999999 99999999999999999999975 68999888766542 222
Q ss_pred ---------------CCCCCCCCcEEEccccCCCCCCC-C-CCCCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEeec
Q 038030 137 ---------------TTAGGGSLDIVISESGWPAAGGD-G-ALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFAIFD 199 (202)
Q Consensus 137 ---------------~~~g~~~~~vvV~ETGWPs~G~~-~-~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~~Fd 199 (202)
..+| .++.++|+||||||.|.. | ++||++||+.|+|+++|.+ |..++++|+||+||
T Consensus 211 ~~~~~f~~~q~e~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~------~~~G~d~fvfeAFd 283 (305)
T COG5309 211 NAAGTFLLEQLERVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL------RSCGYDVFVFEAFD 283 (305)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh------hccCccEEEeeecc
Confidence 2233 339999999999999998 3 7999999999999999986 23368999999999
Q ss_pred CC
Q 038030 200 EN 201 (202)
Q Consensus 200 en 201 (202)
|+
T Consensus 284 d~ 285 (305)
T COG5309 284 DD 285 (305)
T ss_pred cc
Confidence 86
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.79 E-value=1.3e-07 Score=83.55 Aligned_cols=166 Identities=17% Similarity=0.314 Sum_probs=91.3
Q ss_pred hHHHHHHHHhCCCCeEEE--e-cC------C-hHH---HHHhhcCCCeEEecCCCc------------------hhHHhh
Q 038030 9 KPDVIALYNQNNIRRMRL--Y-DP------N-REA---LEAFRGSNFEVMPGLPND------------------DLRRIS 57 (202)
Q Consensus 9 ~~~v~~llk~~~~~~vRi--Y-~~------d-~~v---l~A~~~~glkv~lgv~n~------------------~~~~~a 57 (202)
..++.++||.+|++.||+ | ++ | .++ .+.++..|++|+|-.-.+ ++..+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999986665 4 22 1 133 355678999999977321 112222
Q ss_pred hhHHHHHHHHHHhhhhcc-CCceEEEEEecCCCCCC-----C-C-cHhhHHHHHHHHHHHHHhCCCCCCeeeeeee----
Q 038030 58 STQAEANTWVQENVQNFV-NNVKFKCIAVGNEAKPG-----D-D-FAQYLVPTMRNIQNAIDGANLGSQIKVSTAI---- 125 (202)
Q Consensus 58 ~~~~~a~~wv~~~v~~~~-~~~~i~~I~VGNE~l~~-----~-~-~~~~l~~~i~~v~~aL~~~gl~~~I~Vst~~---- 125 (202)
. +.....+.-+...- -+.....|-||||.-+. + . ..+.+...++...+++++.+- .+||....
T Consensus 106 ~---~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~ 180 (332)
T PF07745_consen 106 K---AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGG 180 (332)
T ss_dssp H---HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TT
T ss_pred H---HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCC
Confidence 1 22223222222221 24668899999997432 1 1 467777777777788777443 45554331
Q ss_pred -----------------eeceeccCCCC---------------CCCCCCCCcEEEccccCCCCCCC--------------
Q 038030 126 -----------------ELGVLDAFSPP---------------TTAGGGSLDIVISESGWPAAGGD-------------- 159 (202)
Q Consensus 126 -----------------~~~~l~~~~pp---------------~~~g~~~~~vvV~ETGWPs~G~~-------------- 159 (202)
.+|+++-||=| ....| +|+|+|.|||||..-..
T Consensus 181 ~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~ 259 (332)
T PF07745_consen 181 DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRY-GKPVMVVETGYPWTLDDGDGTGNIIGATSLI 259 (332)
T ss_dssp SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHH-T-EEEEEEE---SBS--SSSS--SSSSSTGG
T ss_pred chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHh-CCeeEEEeccccccccccccccccCcccccc
Confidence 26777776544 11123 68999999999988221
Q ss_pred -CCCCCHHHHHHHHHHHHHHhh
Q 038030 160 -GALTNVDNAKTYNNNLIQHVK 180 (202)
Q Consensus 160 -~~~as~~na~~y~~~~~~~~~ 180 (202)
+-.+|++.|+.|++.+++.+.
T Consensus 260 ~~yp~t~~GQ~~~l~~l~~~v~ 281 (332)
T PF07745_consen 260 SGYPATPQGQADFLRDLINAVK 281 (332)
T ss_dssp TTS-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 113689999999999999873
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.34 E-value=4.7e-06 Score=72.67 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=67.2
Q ss_pred HHHHhCCCCeEEEecCCh-----HHHHHhhcCCCeEEecCCCc--hhHHhhh----hHHHHHHHHHHhhhhccCCceEEE
Q 038030 14 ALYNQNNIRRMRLYDPNR-----EALEAFRGSNFEVMPGLPND--DLRRISS----TQAEANTWVQENVQNFVNNVKFKC 82 (202)
Q Consensus 14 ~llk~~~~~~vRiY~~d~-----~vl~A~~~~glkv~lgv~n~--~~~~~a~----~~~~a~~wv~~~v~~~~~~~~i~~ 82 (202)
.+||..|++.||+|..|+ ..+.+|+..||=|++.+... .+..... +...-.+ ...-|..+..-.++-+
T Consensus 60 ~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~P~~sw~~~l~~~-~~~vid~fa~Y~N~Lg 138 (314)
T PF03198_consen 60 PLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRSDPAPSWNTDLLDR-YFAVIDAFAKYDNTLG 138 (314)
T ss_dssp HHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TTS------HHHHHH-HHHHHHHHTT-TTEEE
T ss_pred HHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCCCCcCCCCHHHHHH-HHHHHHHhccCCceEE
Confidence 378899999999998874 47999999999999998642 3332211 0011111 1223344333367889
Q ss_pred EEecCCCCCCCC---cHhhHHHHHHHHHHHHHhCCCCCCeeeee
Q 038030 83 IAVGNEAKPGDD---FAQYLVPTMRNIQNAIDGANLGSQIKVST 123 (202)
Q Consensus 83 I~VGNE~l~~~~---~~~~l~~~i~~v~~aL~~~gl~~~I~Vst 123 (202)
..+|||+++... .++.+-.+++.+|+.+++.++. +|||+=
T Consensus 139 Ff~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGY 181 (314)
T PF03198_consen 139 FFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGY 181 (314)
T ss_dssp EEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEE
T ss_pred EEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeE
Confidence 999999998753 6788899999999999999984 588873
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00024 Score=61.82 Aligned_cols=166 Identities=17% Similarity=0.350 Sum_probs=97.3
Q ss_pred hHHHHHHHHhCCCCeEEE--e----cCC--------hH------HHHHhhcCCCeEEecCCCchh---HHhhhhHHHHHH
Q 038030 9 KPDVIALYNQNNIRRMRL--Y----DPN--------RE------ALEAFRGSNFEVMPGLPNDDL---RRISSTQAEANT 65 (202)
Q Consensus 9 ~~~v~~llk~~~~~~vRi--Y----~~d--------~~------vl~A~~~~glkv~lgv~n~~~---~~~a~~~~~a~~ 65 (202)
.+++.+.||.+|++.||+ | |.| ++ +-+.+++.|+||++-.-.++. +.-...+ ..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kP---ka 141 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKP---KA 141 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCc---HH
Confidence 567889999999986655 4 333 22 224456899999998743221 1111111 11
Q ss_pred HHH-------Hhhhhc-------c--CCceEEEEEecCCCCCC-----CC--cHhhHHHHHHHHHHHHHhCCCCCCeeee
Q 038030 66 WVQ-------ENVQNF-------V--NNVKFKCIAVGNEAKPG-----DD--FAQYLVPTMRNIQNAIDGANLGSQIKVS 122 (202)
Q Consensus 66 wv~-------~~v~~~-------~--~~~~i~~I~VGNE~l~~-----~~--~~~~l~~~i~~v~~aL~~~gl~~~I~Vs 122 (202)
|.. ..+-.| + -+..+..|-||||.-.. ++ ....+..-+..-.++++.. +..|||-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEE
Confidence 221 111111 1 13467899999998542 22 2233444444444444442 2347665
Q ss_pred eee---------------------eeceeccCCCC--------------CCCCCCCCcEEEccccC--------------
Q 038030 123 TAI---------------------ELGVLDAFSPP--------------TTAGGGSLDIVISESGW-------------- 153 (202)
Q Consensus 123 t~~---------------------~~~~l~~~~pp--------------~~~g~~~~~vvV~ETGW-------------- 153 (202)
-.. .+|+++.||-| ..+.--+|+|+|.||+.
T Consensus 220 lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~ 299 (403)
T COG3867 220 LHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTF 299 (403)
T ss_pred EEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcC
Confidence 321 26788877555 12223578999999998
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHh
Q 038030 154 PAAGGDG-ALTNVDNAKTYNNNLIQHV 179 (202)
Q Consensus 154 Ps~G~~~-~~as~~na~~y~~~~~~~~ 179 (202)
|+.+..+ --.++.-|++|.++++..+
T Consensus 300 ~~~~~t~~ypitVQGQat~vrDvie~V 326 (403)
T COG3867 300 PSSEQTGGYPITVQGQATFVRDVIEAV 326 (403)
T ss_pred CcccccCCCceEEechhhHHHHHHHHH
Confidence 7777552 2367788999999999988
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.59 E-value=0.00095 Score=56.04 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=73.0
Q ss_pred ChHHHHHHHHhCCCCeEEEecC-------------C-------hHHHHHhhcCCCeEEecCCCc-hh---HHhhhhHHHH
Q 038030 8 SKPDVIALYNQNNIRRMRLYDP-------------N-------REALEAFRGSNFEVMPGLPND-DL---RRISSTQAEA 63 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~-------------d-------~~vl~A~~~~glkv~lgv~n~-~~---~~~a~~~~~a 63 (202)
..++.++.+++.|++.|||.-. + ..+|++|+..||.|+|.+... .. ..........
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~ 101 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTA 101 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhh
Confidence 5678889999999999999721 1 147788999999999976532 00 0000011112
Q ss_pred HHHHHH---hhhhcc-CCceEEEEEecCCCCCCCC-------cHhhHHHHHHHHHHHHHhCCCCCCeeee
Q 038030 64 NTWVQE---NVQNFV-NNVKFKCIAVGNEAKPGDD-------FAQYLVPTMRNIQNAIDGANLGSQIKVS 122 (202)
Q Consensus 64 ~~wv~~---~v~~~~-~~~~i~~I~VGNE~l~~~~-------~~~~l~~~i~~v~~aL~~~gl~~~I~Vs 122 (202)
..|+++ .+...+ ....|.++=+.||+..... ....+.+.++.+.+++++.+-...|-+.
T Consensus 102 ~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 102 QAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 222221 233333 3345778999999988632 2377889999999999999876444444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.57 E-value=0.011 Score=56.06 Aligned_cols=179 Identities=12% Similarity=0.052 Sum_probs=103.6
Q ss_pred HHHHHhCCCCeEEEec--CChHHHHHhhcCCCeEEecCCCc---------------hhHHhh------hhHHHHHHHHHH
Q 038030 13 IALYNQNNIRRMRLYD--PNREALEAFRGSNFEVMPGLPND---------------DLRRIS------STQAEANTWVQE 69 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~--~d~~vl~A~~~~glkv~lgv~n~---------------~~~~~a------~~~~~a~~wv~~ 69 (202)
++++|..|++.||+-. .++..+.+|...||=|+-=++.. .-+... ...+....-++.
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 4478899999999943 36789999999999887533210 000000 011222333455
Q ss_pred hhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeee-----------eeeeceecc-CCCC-
Q 038030 70 NVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVST-----------AIELGVLDA-FSPP- 136 (202)
Q Consensus 70 ~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst-----------~~~~~~l~~-~~pp- 136 (202)
.|..+..+-.|..=++|||.-...+ ..-.+++.+.+.+++..=+..|.... ....|+++- .|++
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~~~---~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~~~~Dv~~~N~Y~~w 475 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASREQ---GAREYFAPLAELTRKLDPTRPVTCVNVMFATPDTDTVSDLVDVLCLNRYYGW 475 (604)
T ss_pred HHHhccCCceEEEEeeccCCCccch---hHHHHHHHHHHHHHhhCCCCceEEEecccCCcccccccCcccEEEEccccee
Confidence 5666544445778899999753322 22334455555555544322232211 012566653 2332
Q ss_pred -C-------------------CCCCCCCcEEEccccCCCCCCC----CCCCCHHHHHHHHHHHHHHhhcCCCCCCCCceE
Q 038030 137 -T-------------------TAGGGSLDIVISESGWPAAGGD----GALTNVDNAKTYNNNLIQHVKQGSPKKPRPIET 192 (202)
Q Consensus 137 -~-------------------~~g~~~~~vvV~ETGWPs~G~~----~~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~ 192 (202)
. ...+ +++++++|.|+.+.-+. ...-|.+.|..|++...+.+. .+|.-+-.
T Consensus 476 y~~~~~~~~~~~~~~~~~~~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~ 550 (604)
T PRK10150 476 YVDSGDLETAEKVLEKELLAWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGE 550 (604)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEE
Confidence 0 0112 79999999998664221 123578899998887777653 23556678
Q ss_pred EEEEeec
Q 038030 193 YIFAIFD 199 (202)
Q Consensus 193 y~F~~Fd 199 (202)
|+..+||
T Consensus 551 ~iW~~~D 557 (604)
T PRK10150 551 QVWNFAD 557 (604)
T ss_pred EEEeeec
Confidence 8888887
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.37 E-value=0.13 Score=44.31 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=47.9
Q ss_pred ChHHHHH---HHHhCCCCeEEEec--CChHHHHHhhcCCCeEEecCCCc------hhH------HhhhhHHHHHHHHHHh
Q 038030 8 SKPDVIA---LYNQNNIRRMRLYD--PNREALEAFRGSNFEVMPGLPND------DLR------RISSTQAEANTWVQEN 70 (202)
Q Consensus 8 s~~~v~~---llk~~~~~~vRiY~--~d~~vl~A~~~~glkv~lgv~n~------~~~------~~a~~~~~a~~wv~~~ 70 (202)
+.+++.+ ++|+.|++.||+.. .++..+.+|...||-|+.-++.. ... .-....+.....+++.
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREM 113 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHH
Confidence 4555555 67889999999964 45789999999999998765431 000 0001122334445555
Q ss_pred hhhccCCceEEEEEecCCC
Q 038030 71 VQNFVNNVKFKCIAVGNEA 89 (202)
Q Consensus 71 v~~~~~~~~i~~I~VGNE~ 89 (202)
|..+..+-.|..=++|||.
T Consensus 114 v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 114 VRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp HHHHTT-TTEEEEEEEESS
T ss_pred HHcCcCcCchheeecCccC
Confidence 6555433347778899999
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.69 E-value=3.3 Score=42.15 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=78.3
Q ss_pred ChHHHHH---HHHhCCCCeEEEec--CChHHHHHhhcCCCeEEecCCC--chh------HHhhhhH---HHHHHHHHHhh
Q 038030 8 SKPDVIA---LYNQNNIRRMRLYD--PNREALEAFRGSNFEVMPGLPN--DDL------RRISSTQ---AEANTWVQENV 71 (202)
Q Consensus 8 s~~~v~~---llk~~~~~~vRiY~--~d~~vl~A~~~~glkv~lgv~n--~~~------~~~a~~~---~~a~~wv~~~v 71 (202)
+++++.+ ++|+.|++.||+.. .++..+.+|...||=|+--+.. ... ..+..++ ++..+-++..|
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV 432 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHI 432 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHH
Confidence 4555544 67889999999864 3467899999999988774321 000 0111121 12233345556
Q ss_pred hhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeee-----eeeeceeccCCCC------CCCC
Q 038030 72 QNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVST-----AIELGVLDAFSPP------TTAG 140 (202)
Q Consensus 72 ~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst-----~~~~~~l~~~~pp------~~~g 140 (202)
..+..+-.|..=++|||.-.. .. ++.+.+.+++..=+. +|.- ....|+++..|+. ....
T Consensus 433 ~RdrNHPSIi~WslGNE~~~g-~~-------~~~~~~~~k~~DptR--~v~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~ 502 (1021)
T PRK10340 433 HAQKNHPSIIIWSLGNESGYG-CN-------IRAMYHAAKALDDTR--LVHYEEDRDAEVVDVISTMYTRVELMNEFGEY 502 (1021)
T ss_pred HhCCCCCEEEEEECccCcccc-HH-------HHHHHHHHHHhCCCc--eEEeCCCcCccccceeccccCCHHHHHHHHhC
Confidence 655444457788899998542 11 123333333332211 2221 1235777766775 1122
Q ss_pred CCCCcEEEccccCCCCCC
Q 038030 141 GGSLDIVISESGWPAAGG 158 (202)
Q Consensus 141 ~~~~~vvV~ETGWPs~G~ 158 (202)
.++++++++|.|- ..|+
T Consensus 503 ~~~kP~i~~Ey~h-amgn 519 (1021)
T PRK10340 503 PHPKPRILCEYAH-AMGN 519 (1021)
T ss_pred CCCCcEEEEchHh-ccCC
Confidence 3579999999993 4443
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=89.86 E-value=16 Score=37.33 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=84.1
Q ss_pred CChHHHHH---HHHhCCCCeEEEec--CChHHHHHhhcCCCeEEecCCCch-----hHHhhhhH---HHHHHHHHHhhhh
Q 038030 7 PSKPDVIA---LYNQNNIRRMRLYD--PNREALEAFRGSNFEVMPGLPNDD-----LRRISSTQ---AEANTWVQENVQN 73 (202)
Q Consensus 7 ps~~~v~~---llk~~~~~~vRiY~--~d~~vl~A~~~~glkv~lgv~n~~-----~~~~a~~~---~~a~~wv~~~v~~ 73 (202)
.+++++.+ ++|..|++.||+-. .++..+..|...||=|+--++... ...+..++ ++..+-++..|..
T Consensus 368 ~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~~~~~~~~~mV~R 447 (1027)
T PRK09525 368 MDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLPAMSERVTRMVQR 447 (1027)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Confidence 35555544 66889999999954 357899999999998876543210 00111111 1223334445555
Q ss_pred ccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeee----eeeeceeccCCCCCC-----------
Q 038030 74 FVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVST----AIELGVLDAFSPPTT----------- 138 (202)
Q Consensus 74 ~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst----~~~~~~l~~~~pp~~----------- 138 (202)
...+-.|..=++|||.-.. .. .+.+...+++..=+..|.... ....|+++..|+...
T Consensus 448 drNHPSIi~WSlgNE~~~g-~~-------~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~ 519 (1027)
T PRK09525 448 DRNHPSIIIWSLGNESGHG-AN-------HDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKW 519 (1027)
T ss_pred CCCCCEEEEEeCccCCCcC-hh-------HHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchH
Confidence 4434457888999997432 11 223333343332222222110 112466655554311
Q ss_pred -------CCCCCCcEEEccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038030 139 -------AGGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQ 177 (202)
Q Consensus 139 -------~g~~~~~vvV~ETGWPs~G~~~~~as~~na~~y~~~~~~ 177 (202)
...++++++++|=|- +- | .+.-|-+.|++-+-+
T Consensus 520 ~~~~~~~~~~~~kP~i~cEY~H--am--g--n~~g~l~~yw~~~~~ 559 (1027)
T PRK09525 520 SIKKWISLPGETRPLILCEYAH--AM--G--NSLGGFAKYWQAFRQ 559 (1027)
T ss_pred HHHHHHhcCCCCCCEEEEechh--cc--c--CcCccHHHHHHHHhc
Confidence 112469999999982 22 2 333366777775544
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=88.57 E-value=1.1 Score=37.63 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred CcEEEccccCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEE
Q 038030 144 LDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFA 196 (202)
Q Consensus 144 ~~vvV~ETGWPs~G~~~~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~ 196 (202)
++|+|||.|+.. +... .+.+.++.|++..+..+.+ ++.--.+++|.
T Consensus 166 kPIWITEf~~~~-~~~~--~~~~~~~~fl~~~~~~ld~----~~~VeryawF~ 211 (239)
T PF11790_consen 166 KPIWITEFGCWN-GGSQ--GSDEQQASFLRQALPWLDS----QPYVERYAWFG 211 (239)
T ss_pred CCEEEEeecccC-CCCC--CCHHHHHHHHHHHHHHHhc----CCCeeEEEecc
Confidence 999999999887 2223 7888999999999988742 13344677777
No 12
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=87.28 E-value=13 Score=31.38 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=26.6
Q ss_pred CCCcEEEccccCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 038030 142 GSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQHV 179 (202)
Q Consensus 142 ~~~~vvV~ETGWPs~G~~~~~as~~na~~y~~~~~~~~ 179 (202)
-+++|.|||.+-|..+ +.+.|+.|++.++..+
T Consensus 181 ~g~pi~iTE~dv~~~~------~~~~qA~~~~~~l~~~ 212 (254)
T smart00633 181 LGLEIQITELDISGYP------NPQAQAADYEEVFKAC 212 (254)
T ss_pred cCCceEEEEeecCCCC------cHHHHHHHHHHHHHHH
Confidence 5899999999998753 4478889999998877
No 13
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=84.35 E-value=3.5 Score=27.22 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=34.7
Q ss_pred CChHHHHHHHHhCCCCeEEEecCC-----hHHHHHhhcCCCeEEecCC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPN-----REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d-----~~vl~A~~~~glkv~lgv~ 49 (202)
-+++++++..+.+|++.+=+-|-+ ......++..|++++.|+-
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 357899999999999999888776 3455667788999999874
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=81.64 E-value=22 Score=31.64 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCCeEEEec-------CC---------hHHHHHhhcCCCeEEecCCCchhH--------------------
Q 038030 11 DVIALYNQNNIRRMRLYD-------PN---------REALEAFRGSNFEVMPGLPNDDLR-------------------- 54 (202)
Q Consensus 11 ~v~~llk~~~~~~vRiY~-------~d---------~~vl~A~~~~glkv~lgv~n~~~~-------------------- 54 (202)
+-++++|..|++.|||-. +. ..+|..++..||+|+|+++....+
T Consensus 14 ~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~ 93 (374)
T PF02449_consen 14 EDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRR 93 (374)
T ss_dssp HHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBE
T ss_pred HHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcC
Confidence 445577789999999742 11 247888899999999988521111
Q ss_pred ------Hhh----hhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCC
Q 038030 55 ------RIS----STQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPG 92 (202)
Q Consensus 55 ------~~a----~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~ 92 (202)
... .-.+.+.+.++.-...|-.+-.|.++-|+||.-..
T Consensus 94 ~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 94 GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 000 01233455555444445434468999999998663
No 15
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=73.92 E-value=5.7 Score=32.35 Aligned_cols=33 Identities=12% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
++.|+..|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999998888889999999986
No 16
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=73.22 E-value=6 Score=32.41 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=29.9
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
++.|+..|++.||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999998888889999999996
No 17
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=72.77 E-value=23 Score=33.26 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=79.4
Q ss_pred cCCCeEEecCCC--------chh---HHhh----hh-HHHHHHHHHHhhhhccC-CceEEEEEecCCCCCC-----C---
Q 038030 39 GSNFEVMPGLPN--------DDL---RRIS----ST-QAEANTWVQENVQNFVN-NVKFKCIAVGNEAKPG-----D--- 93 (202)
Q Consensus 39 ~~glkv~lgv~n--------~~~---~~~a----~~-~~~a~~wv~~~v~~~~~-~~~i~~I~VGNE~l~~-----~--- 93 (202)
+.++|++..-|. ... ..+- .. .++-...+.+-|..|-. +..|.+|++.||+... .
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 457999999882 111 1111 01 12334444555666532 5789999999999852 1
Q ss_pred -C-cHhhHHHHHHH-HHHHHHhCCCCCCeeeee-eeeece--------ecc----------C---C---C-C-----CCC
Q 038030 94 -D-FAQYLVPTMRN-IQNAIDGANLGSQIKVST-AIELGV--------LDA----------F---S---P-P-----TTA 139 (202)
Q Consensus 94 -~-~~~~l~~~i~~-v~~aL~~~gl~~~I~Vst-~~~~~~--------l~~----------~---~---p-p-----~~~ 139 (202)
. ++++....|++ +.-+|++.|+..++|+-. .+..+. |.+ . | + + ...
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~ 325 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHN 325 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHH
Confidence 1 57888888986 999999999966687744 333221 110 0 1 0 0 123
Q ss_pred CCCCCcEEEcccc---CCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 038030 140 GGGSLDIVISESG---WPAAGGDGALTNVDNAKTYNNNLIQHV 179 (202)
Q Consensus 140 g~~~~~vvV~ETG---WPs~G~~~~~as~~na~~y~~~~~~~~ 179 (202)
.+|++.++-||.- |+.. ......+-+.+..|...++..+
T Consensus 326 ~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~~~y~~~ii~~l 367 (496)
T PF02055_consen 326 KFPDKFLLFTEACCGSWNWD-TSVDLGSWDRAERYAHDIIGDL 367 (496)
T ss_dssp HSTTSEEEEEEEESS-STTS--SS-TTHHHHHHHHHHHHHHHH
T ss_pred HCCCcEEEeeccccCCCCcc-cccccccHHHHHHHHHHHHHHH
Confidence 4799999999963 2221 1111245677788888877665
No 18
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.20 E-value=36 Score=30.30 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCCeEEEec-CChHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCC-CC-cH
Q 038030 20 NIRRMRLYD-PNREALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPG-DD-FA 96 (202)
Q Consensus 20 ~~~~vRiY~-~d~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~~-~~ 96 (202)
.++.|-+|+ .|++++..+...|++|++..... ...+ .++....+++++-+. +...-.+.+|-+==|-... +. ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv~-~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKVE-LAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHHH-HHHHhCCCeEEEcccCCCCCCcchH
Confidence 467788885 47889988899999999864321 2222 244444455554332 2221235566555555432 11 45
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCeeee
Q 038030 97 QYLVPTMRNIQNAIDGANLGSQIKVS 122 (202)
Q Consensus 97 ~~l~~~i~~v~~aL~~~gl~~~I~Vs 122 (202)
+.+..-|+.+|++|.+.+..-.+.++
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 67888999999999987543234443
No 19
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=65.30 E-value=11 Score=30.68 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=29.5
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
++.|+..|++.||+.+..+.-+.++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 678889999999999998878889999999997
No 20
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=63.17 E-value=18 Score=27.49 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCC
Q 038030 10 PDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~ 49 (202)
.++.++|+.+|++.|=....-+..+.+|+..||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3688999999999999988999999999999999999987
No 21
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=55.91 E-value=33 Score=26.24 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=33.9
Q ss_pred ChHHHHHHHHhCCCCeEEEecC---------------------C--hHHHHHhhcCCCeEEecCC
Q 038030 8 SKPDVIALYNQNNIRRMRLYDP---------------------N--REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~---------------------d--~~vl~A~~~~glkv~lgv~ 49 (202)
+|++.++.||..++++|-+|.- | .++++||...||+|++=+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 4789999999999999988742 1 3577999999999987654
No 22
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=55.26 E-value=63 Score=27.04 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=45.9
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh--------HHHHHhhc-CCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR--------EALEAFRG-SNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNN 77 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~--------~vl~A~~~-~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~ 77 (202)
.+|-++++.+++.|++.+=+.|.|. ++++.+.. .-.++.+|=...++ +.+.+++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-------e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDI-------EKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCH-------HHHHHHHHC--------
Confidence 4789999999989999999998762 56776665 33488886553222 223444331
Q ss_pred ceEEEEEecCCCCCC
Q 038030 78 VKFKCIAVGNEAKPG 92 (202)
Q Consensus 78 ~~i~~I~VGNE~l~~ 92 (202)
.+..|+||++.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23446778887765
No 23
>PRK08815 GTP cyclohydrolase; Provisional
Probab=55.22 E-value=19 Score=32.68 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
+++|+..|+++||+.+.++.=+.++.+.||+|.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv 337 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVE 337 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999999988889999999986
No 24
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=55.03 E-value=35 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCeEEEe--cCC---hHHHHHhhcCCCeEE
Q 038030 10 PDVIALYNQNNIRRMRLY--DPN---REALEAFRGSNFEVM 45 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~d---~~vl~A~~~~glkv~ 45 (202)
+++.+.++..|+..|+++ +.. ..+|++++..|+++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445567777899998888 332 468999999999864
No 25
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=54.98 E-value=39 Score=29.11 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=50.9
Q ss_pred ChHHHHHhhcCCCeEEecCCCch--------hHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhhHHH
Q 038030 30 NREALEAFRGSNFEVMPGLPNDD--------LRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVP 101 (202)
Q Consensus 30 d~~vl~A~~~~glkv~lgv~n~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~ 101 (202)
+++++.+++..++|+++.|.+.. ...+..++....+.++ ++..+...-.+.+|-+-=|.+... ....+..
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~~-d~~~~~~ 124 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPPE-DREAYTQ 124 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCHH-HHHHHHH
Confidence 35788888888999998886421 2344444443333333 332222111345565555665322 3566888
Q ss_pred HHHHHHHHHHhCCC
Q 038030 102 TMRNIQNAIDGANL 115 (202)
Q Consensus 102 ~i~~v~~aL~~~gl 115 (202)
.++.+|.+|.+.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 89999999987775
No 26
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=53.96 E-value=20 Score=32.59 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=31.4
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecC
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGL 48 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv 48 (202)
++.|+..|+++||+.+.++.=+.++.+.||+|.=-+
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~v 355 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETV 355 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 678899999999999999988889999999997333
No 27
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.16 E-value=1.3e+02 Score=24.61 Aligned_cols=96 Identities=13% Similarity=0.275 Sum_probs=59.5
Q ss_pred hHHHHHHHHhCCCCeEEEe-cC-C--hHHHHHhhcCCCeEEecCCCch-hHHhhhhHHHHHHHHHHhhhhccCC-ceEEE
Q 038030 9 KPDVIALYNQNNIRRMRLY-DP-N--REALEAFRGSNFEVMPGLPNDD-LRRISSTQAEANTWVQENVQNFVNN-VKFKC 82 (202)
Q Consensus 9 ~~~v~~llk~~~~~~vRiY-~~-d--~~vl~A~~~~glkv~lgv~n~~-~~~~a~~~~~a~~wv~~~v~~~~~~-~~i~~ 82 (202)
|.+.++.++..|.+.|=+- .+ . .++++.++..|+++-+.++... +. .+.+|.+. +.|-.
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~---------------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVE---------------ELEPYLDQVDMVLV 133 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GG---------------GGTTTGCCSSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCch---------------HHHHHhhhcCEEEE
Confidence 5677777777777755332 22 2 3688999999999988886432 21 13444443 23333
Q ss_pred EEecCCCCCCCC-cHhhHHHHHHHHHHHHHhCCCCCCeee
Q 038030 83 IAVGNEAKPGDD-FAQYLVPTMRNIQNAIDGANLGSQIKV 121 (202)
Q Consensus 83 I~VGNE~l~~~~-~~~~l~~~i~~v~~aL~~~gl~~~I~V 121 (202)
.+| |+=+.++ +-+..+..|+.+|+.+...|++-.|.|
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 333 4433455 788999999999999999887544443
No 28
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=51.89 E-value=23 Score=32.37 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 12 VIALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 12 v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
.+++|+..|+++||+.+-++.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3678899999999999999988889999999996
No 29
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=51.06 E-value=23 Score=33.71 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.7
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
+++|+..|+++||+..-++.=+.++.+.||+|.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv 375 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVV 375 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999999999999999999987
No 30
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=50.65 E-value=24 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEE
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVM 45 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~ 45 (202)
+++|+..|+++||+..-++.=+.++.+.||+|.
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVv 405 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVV 405 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 678899999999999999988889999999996
No 31
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=50.60 E-value=18 Score=35.24 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=54.2
Q ss_pred HHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeeeeee-----------------
Q 038030 64 NTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVSTAIE----------------- 126 (202)
Q Consensus 64 ~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst~~~----------------- 126 (202)
.+|+...-..| +-.|.+|-+=||--.. ..+++.+|++|...||. +||+..++.
T Consensus 160 ~~wl~ga~~~~--gl~idYvg~~NEr~~~-------~~~ik~lr~~l~~~gy~-~vkiva~D~~~~~~~~~m~~D~~l~~ 229 (669)
T PF02057_consen 160 VSWLLGAKKTH--GLDIDYVGIWNERGFD-------VNYIKWLRKALNSNGYN-KVKIVAADNNWESISDDMLSDPELRN 229 (669)
T ss_dssp HHHHHHHHHHH-------EE-S-TTS----------HHHHHHHHHHHHHTT-T-T-EEEEEEE-STTHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHh--CCCceEechhhccCCC-------hhHHHHHHHHHhhcccc-ceEEEEeCCCccchhhhhhcCHHHHh
Confidence 57876554444 2468888776776442 67899999999999995 699876654
Q ss_pred -eceeccCCCCC----CCCCCCCcEEEccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038030 127 -LGVLDAFSPPT----TAGGGSLDIVISESGWPAAGGDGALTNVDNAKTYNNNLIQ 177 (202)
Q Consensus 127 -~~~l~~~~pp~----~~g~~~~~vvV~ETGWPs~G~~~~~as~~na~~y~~~~~~ 177 (202)
.|+++.+||-. .+-..+|++|-+|-+=|-..+.| + .--++..+|+.++
T Consensus 230 avdvig~HY~~~~~~~~a~~~~K~lW~SE~~s~~~~~~g--~-g~~ar~ln~~yv~ 282 (669)
T PF02057_consen 230 AVDVIGYHYPGTYSSKNAKLTGKPLWSSEDYSTFNYNVG--A-GCWARILNRNYVN 282 (669)
T ss_dssp H--EEEEES-TT---HHHHHHT-EEEEEEEE-S-TTHHH--H-HHHHHHHHHHHHH
T ss_pred cccEeccccCCCCcHHHHHHhCCCeEEcCCcccccCcCc--h-HHHHHHHHhhhhc
Confidence 35566667641 11114799999997766433333 1 1135666666665
No 32
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=50.41 E-value=35 Score=31.34 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCCeEEEe--cCCh-------------H---HHHHhhcCCC-----eEEecCCCchhHHhhhhHHHHHHH
Q 038030 10 PDVIALYNQNNIRRMRLY--DPNR-------------E---ALEAFRGSNF-----EVMPGLPNDDLRRISSTQAEANTW 66 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~d~-------------~---vl~A~~~~gl-----kv~lgv~n~~~~~~a~~~~~a~~w 66 (202)
++.+++|+..|+++|-+= +.++ + .++.++..|+ .+|.|++.+....+......+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 567888888888865432 2222 2 3344455555 36889988777766554433322
Q ss_pred HHHhhhhccCCceEEE--EE-----------ecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCCCCeeeee
Q 038030 67 VQENVQNFVNNVKFKC--IA-----------VGNEAKPGDDFAQYLVPTMRNIQNAIDGANLGSQIKVST 123 (202)
Q Consensus 67 v~~~v~~~~~~~~i~~--I~-----------VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst 123 (202)
.-| ..|.. .. +|...+. +.+....-++...+.|.++||. ++.++.
T Consensus 231 -------l~p-~~i~~y~l~~~p~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~ 288 (453)
T PRK13347 231 -------LSP-DRIAVFGYAHVPSRRKNQRLIDEAALP---DAEERLRQARAVADRLLAAGYV-PIGLDH 288 (453)
T ss_pred -------cCC-CEEEEeccccccchhhHHhcCCccCCc---CHHHHHHHHHHHHHHHHHCCCE-EEeccc
Confidence 112 12221 11 1111111 3456677778899999999994 454443
No 33
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=49.41 E-value=1.1e+02 Score=25.38 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=34.7
Q ss_pred ChHHHHHHHHhCCCCeEEEecCCh--------HHHHHhh-cCCCeEEecCCCch
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPNR--------EALEAFR-GSNFEVMPGLPNDD 52 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d~--------~vl~A~~-~~glkv~lgv~n~~ 52 (202)
.|.++++.+++.|++.+=+.|.|. .+++.+. ..++++++|-...+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~ 89 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS 89 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC
Confidence 689999999999999999988762 3666554 56889999876433
No 34
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.60 E-value=1e+02 Score=26.01 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=48.2
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh---------HHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR---------EALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNN 77 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~---------~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~ 77 (202)
..|-++++.+++.|++.+=+.|.|. ++++.++..-+++.+|=...++ +.+.+|+. .
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~-------e~~~~~l~------~-- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIRSL-------DYAEKLRK------L-- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCCCH-------HHHHHHHH------C--
Confidence 4788999999999999999998762 4677766533688886653222 33455543 1
Q ss_pred ceEEEEEecCCCCCC
Q 038030 78 VKFKCIAVGNEAKPG 92 (202)
Q Consensus 78 ~~i~~I~VGNE~l~~ 92 (202)
....|++|++.+.+
T Consensus 95 -Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 -GYRRQIVSSKVLED 108 (241)
T ss_pred -CCCEEEECchhhCC
Confidence 23457889999876
No 35
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.59 E-value=50 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCeEEEecCC---hHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHH
Q 038030 10 PDVIALYNQNNIRRMRLYDPN---REALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWV 67 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~~d---~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv 67 (202)
.+-+++|.+.++..++|=+.| ...|+.++.+|.+|+|...-..+..+ ..|.+.+
T Consensus 79 ~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI----~~Av~~~ 135 (241)
T PF03102_consen 79 EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI----ERAVEVL 135 (241)
T ss_dssp HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH----HHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH----HHHHHHH
Confidence 456788888889999998776 35899999999999998886555543 4455555
No 36
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=48.21 E-value=32 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.3
Q ss_pred HHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCCC
Q 038030 13 IALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLPN 50 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~n 50 (202)
+++|+..|++.||+-+.+|.=..++.+.||+|.=-++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 45888899999999999998888889999998766653
No 37
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=48.03 E-value=1.4e+02 Score=24.19 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=39.0
Q ss_pred CeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCC-cHhhHHHHHHHHHHHHHhC
Q 038030 42 FEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDD-FAQYLVPTMRNIQNAIDGA 113 (202)
Q Consensus 42 lkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~-~~~~l~~~i~~v~~aL~~~ 113 (202)
++|++|-.|.- -.+-++.....+++...|..+.|-+.+-...- ..+.+..|+++++++++..
T Consensus 2 ~~V~vgT~Npa----------Ki~Av~~af~~~~~~~~v~~v~v~sgv~~QPfg~eeT~~GA~nRA~~A~~~~ 64 (175)
T COG1986 2 VKVAVGTTNPA----------KIRAVEEAFERLFGNVEVVGVAVDSGVPPQPFGDEETVQGARNRAKNALRAV 64 (175)
T ss_pred eEEEecCCChH----------HHHHHHHHHHHhcCceEEEEeccCCCCCCCCcChHHHHHHHHHHHHHHHhhc
Confidence 46777777621 11223444555566455666666666554433 5788899999999999943
No 38
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=47.04 E-value=54 Score=24.64 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 038030 10 PDVIALYNQNNIRRMRLY--D--------PN---REALEAFRGSNFEVM 45 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~--------~d---~~vl~A~~~~glkv~ 45 (202)
+++.+..+..|++.|+++ + +. +..|++++..||++.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 456667778899987777 3 33 358999999999974
No 39
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=46.28 E-value=75 Score=29.28 Aligned_cols=86 Identities=13% Similarity=0.315 Sum_probs=54.7
Q ss_pred CChHHHHHhhcCCCeEEecCCCch--hHHhh--------hhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhh
Q 038030 29 PNREALEAFRGSNFEVMPGLPNDD--LRRIS--------STQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQY 98 (202)
Q Consensus 29 ~d~~vl~A~~~~glkv~lgv~n~~--~~~~a--------~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~ 98 (202)
++..+++.....+++.++++.|.. ...+. +++.+-.+-+...+. -.....++++.+.=|.+...| -+.
T Consensus 148 p~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~-~l~~~Gyrgv~iDfE~v~~~D-R~~ 225 (423)
T COG3858 148 PNENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIIT-LLDARGYRGVNIDFENVGPGD-REL 225 (423)
T ss_pred CCcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHH-HHHhcCcccEEechhhCCHHH-HHH
Confidence 345688888889999999998754 22221 111222222222221 122245788999999987654 556
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 038030 99 LVPTMRNIQNAIDGANLG 116 (202)
Q Consensus 99 l~~~i~~v~~aL~~~gl~ 116 (202)
+-..|+.+|.+|.+.|+.
T Consensus 226 yt~flR~~r~~l~~~G~~ 243 (423)
T COG3858 226 YTDFLRQVRDALHSGGYT 243 (423)
T ss_pred HHHHHHHHHHHhccCCeE
Confidence 677899999999988873
No 40
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=45.96 E-value=43 Score=27.95 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCCCChHHHHHHHHhCCCCeEEEecC-C-hHHHHHhhcCCCeEEecCCCchh
Q 038030 3 GDNLPSKPDVIALYNQNNIRRMRLYDP-N-REALEAFRGSNFEVMPGLPNDDL 53 (202)
Q Consensus 3 ~~~lps~~~v~~llk~~~~~~vRiY~~-d-~~vl~A~~~~glkv~lgv~n~~~ 53 (202)
+....+..|..++|..-||..++..-+ + .+...++..-|.+|.+-+...++
T Consensus 6 g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i 58 (222)
T PF13549_consen 6 GRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDI 58 (222)
T ss_dssp T--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT-
T ss_pred CCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCC
Confidence 344567889999999999987776533 3 46777777888888887764333
No 41
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.73 E-value=1.8e+02 Score=24.27 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=48.2
Q ss_pred CChHHHHHHHHh-CCCCeEEEecCC---------hHHHHHhh-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhcc
Q 038030 7 PSKPDVIALYNQ-NNIRRMRLYDPN---------REALEAFR-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFV 75 (202)
Q Consensus 7 ps~~~v~~llk~-~~~~~vRiY~~d---------~~vl~A~~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~ 75 (202)
.+|.++++.+.+ +|++.+=+.|.| .++++.+. ..++++.+|=....+. .+.+++. .
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-------~v~~~l~------~ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-------QIMDYFA------A 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-------HHHHHHH------C
Confidence 478889998887 789999999875 24676664 5789999976643332 2344432 1
Q ss_pred CCceEEEEEecCCCCCC
Q 038030 76 NNVKFKCIAVGNEAKPG 92 (202)
Q Consensus 76 ~~~~i~~I~VGNE~l~~ 92 (202)
....|++|++.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 23557899999876
No 42
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=45.30 E-value=5.9 Score=36.46 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCeEEEe--------c-----CCh-------HHHHHhhcCCCeEEecCC
Q 038030 10 PDVIALYNQNNIRRMRLY--------D-----PNR-------EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--------~-----~d~-------~vl~A~~~~glkv~lgv~ 49 (202)
+|-++++|+.|++..|+= + .|+ +++..|...||+-+|.+.
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~ 120 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY 120 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee
Confidence 355778888888888865 1 121 478888999999988886
No 43
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.20 E-value=70 Score=26.71 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHhhcCCCeEEecCCCch---hHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHH
Q 038030 32 EALEAFRGSNFEVMPGLPNDD---LRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQN 108 (202)
Q Consensus 32 ~vl~A~~~~glkv~lgv~n~~---~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~ 108 (202)
..+++++..|+||++.|.+.. ...+..++....+++++-+ .+...-.+.+|-+-=|-... ..+.....++.+|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 356777778999998886432 2223444444444444332 22111123444444344322 13456778999999
Q ss_pred HHHhCCC
Q 038030 109 AIDGANL 115 (202)
Q Consensus 109 aL~~~gl 115 (202)
+|.+.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987765
No 44
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=45.03 E-value=37 Score=30.22 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCC------hHHHHHhhcCCCeEEecCCC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPN------REALEAFRGSNFEVMPGLPN 50 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d------~~vl~A~~~~glkv~lgv~n 50 (202)
.|+++++.++++... +.||+|... ..+++.+...|++|.+|=.+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 578888888887543 678888543 35788889999999877654
No 45
>TIGR03356 BGL beta-galactosidase.
Probab=44.86 E-value=32 Score=31.49 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCeEEEe--------c----CC-------hHHHHHhhcCCCeEEecCC
Q 038030 11 DVIALYNQNNIRRMRLY--------D----PN-------REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 11 ~v~~llk~~~~~~vRiY--------~----~d-------~~vl~A~~~~glkv~lgv~ 49 (202)
|=+++||+.|++++|+= + .| .++|..|...||++++.+.
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 44678888899888863 1 12 1478888999999999884
No 46
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=44.46 E-value=45 Score=25.35 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCC-----hHHHHHhhcCCCeEEecCC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPN-----REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d-----~~vl~A~~~~glkv~lgv~ 49 (202)
..+++++++..+..|++.|=+-|-+ +.....++..|+++++|+=
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E 63 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVE 63 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEe
Confidence 3488999999999999999888764 2455667779999999985
No 47
>PHA01735 hypothetical protein
Probab=43.96 E-value=16 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCC
Q 038030 57 SSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKP 91 (202)
Q Consensus 57 a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 91 (202)
+++..+|.+|+++| .|.++.+-|..+.
T Consensus 32 taDL~AA~d~Lk~N--------dItgv~~~gspl~ 58 (76)
T PHA01735 32 TADLRAACDWLKSN--------DITGVAVDGSPLA 58 (76)
T ss_pred HHHHHHHHHHHHHC--------CCceeeCCCCHHH
Confidence 45778899999877 5888888877764
No 48
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=43.70 E-value=1.2e+02 Score=25.18 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCCh--------HHHHHhh-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPNR--------EALEAFR-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVN 76 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d~--------~vl~A~~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~ 76 (202)
+..|.++++.+.+.|++.+=++|.|. ++++.+. ..+++|.+|=...++. .+..++. .+
T Consensus 31 ~~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~e-------dv~~~l~------~G 97 (241)
T PRK14024 31 YGSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDE-------SLEAALA------TG 97 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHH-------HHHHHHH------CC
Confidence 34788999999999999999998762 4676664 4689999976543332 2333332 12
Q ss_pred CceEEEEEecCCCCCC
Q 038030 77 NVKFKCIAVGNEAKPG 92 (202)
Q Consensus 77 ~~~i~~I~VGNE~l~~ 92 (202)
...+.+|.+.+.+
T Consensus 98 ---a~kvviGs~~l~~ 110 (241)
T PRK14024 98 ---CARVNIGTAALEN 110 (241)
T ss_pred ---CCEEEECchHhCC
Confidence 2356778887765
No 49
>PRK07198 hypothetical protein; Validated
Probab=43.15 E-value=23 Score=32.46 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=31.5
Q ss_pred HHHHHHhCCCCeE-EEecCChHHHHHhhcCCCeEEecC
Q 038030 12 VIALYNQNNIRRM-RLYDPNREALEAFRGSNFEVMPGL 48 (202)
Q Consensus 12 v~~llk~~~~~~v-RiY~~d~~vl~A~~~~glkv~lgv 48 (202)
-.++|+..|+++| |+.+..+.=+.++.+.||+|.==+
T Consensus 337 GAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErV 374 (418)
T PRK07198 337 MPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERV 374 (418)
T ss_pred HHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEe
Confidence 3568888999999 999999988899999999997444
No 50
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=42.53 E-value=1.8e+02 Score=23.52 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=40.7
Q ss_pred CeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCc--eEEEEEecCCCCCCCC-cHhhHHHHHHHHHHHHHhC
Q 038030 42 FEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNV--KFKCIAVGNEAKPGDD-FAQYLVPTMRNIQNAIDGA 113 (202)
Q Consensus 42 lkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~--~i~~I~VGNE~l~~~~-~~~~l~~~i~~v~~aL~~~ 113 (202)
++|.+|-.|.- ... -++.....++|.. .+.++.|-+.+-...- .-+.+..|+++++.++...
T Consensus 3 m~V~VgS~NP~------Ki~----Av~~af~~~f~~~~~~v~~v~v~SgV~~QP~g~eET~~GA~nRA~~a~~~~ 67 (173)
T PRK05074 3 YHVIVASTNPA------KIN----AILQAFSEIFPEGSCHIEGVAVPSGVPDQPMGSEETRAGARNRVKNARQLR 67 (173)
T ss_pred EEEEEeCCCHH------HHH----HHHHHHHHhcCCCceEEEEeecCCCcCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 57888877621 111 2333455556653 3778888877754433 5689999999999999874
No 51
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=42.52 E-value=1.1e+02 Score=20.88 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=34.4
Q ss_pred hHHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCC
Q 038030 9 KPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 9 ~~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~ 49 (202)
...++++|...+++.+=.-..-+.....+...|++|+.+..
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEESTS
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcCC
Confidence 45678888888899887778888999999999999999843
No 52
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=42.01 E-value=55 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCeEEEe--cCC---hHHHHHhhcCCCeEEe
Q 038030 10 PDVIALYNQNNIRRMRLY--DPN---REALEAFRGSNFEVMP 46 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~d---~~vl~A~~~~glkv~l 46 (202)
+.+.+.++..|++.|+++ +.. ..+|+++..+|++|..
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 345556677899988888 333 3688999999998643
No 53
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=41.61 E-value=72 Score=24.65 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 038030 10 PDVIALYNQNNIRRMRLY--D--------PN---REALEAFRGSNFEVM 45 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~--------~d---~~vl~A~~~~glkv~ 45 (202)
+++.+.++..|++.|+++ + +. ..+|++++..|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 456667778999988887 3 33 358999999999974
No 54
>CHL00041 rps11 ribosomal protein S11
Probab=41.20 E-value=78 Score=23.70 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCeEEEe--cC--C-hHHHHHhhcCCCeEE
Q 038030 10 PDVIALYNQNNIRRMRLY--DP--N-REALEAFRGSNFEVM 45 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~--d-~~vl~A~~~~glkv~ 45 (202)
+++.+.++..|++.|+++ +. . ..+|++++..|+++.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345556667899988887 33 2 458899999999874
No 55
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=40.43 E-value=49 Score=27.46 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCCh---------HHHHHh-hcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhcc
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPNR---------EALEAF-RGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFV 75 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d~---------~vl~A~-~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~ 75 (202)
.-+|.++++.+...|++.+=+-|.|. +++..+ +..++++.+|=...+ .+.+..|+..
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs-------~ed~~~ll~~------ 94 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRS-------IEDAERLLDA------ 94 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-S-------HHHHHHHHHT------
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCc-------HHHHHHHHHh------
Confidence 35788999999889999998887651 355444 467899999987432 2334555431
Q ss_pred CCceEEEEEecCCCCCC
Q 038030 76 NNVKFKCIAVGNEAKPG 92 (202)
Q Consensus 76 ~~~~i~~I~VGNE~l~~ 92 (202)
....|++|.|.+.+
T Consensus 95 ---Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 95 ---GADRVVIGTEALED 108 (229)
T ss_dssp ---T-SEEEESHHHHHC
T ss_pred ---CCCEEEeChHHhhc
Confidence 13468889888865
No 56
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=39.07 E-value=81 Score=21.27 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCC----cHhhHHHHHHHHHHHHHhC
Q 038030 60 QAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDD----FAQYLVPTMRNIQNAIDGA 113 (202)
Q Consensus 60 ~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~----~~~~l~~~i~~v~~aL~~~ 113 (202)
.+.-.+|++.||.- |++.++.++ ....|+|+++..++.++..
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 34567899888642 445555432 4688999999999888654
No 57
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=38.98 E-value=79 Score=24.98 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=44.8
Q ss_pred HHHHhhcC--CCeEEecCCCchhH---HhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCC--cHhhHHHHHHH
Q 038030 33 ALEAFRGS--NFEVMPGLPNDDLR---RISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDD--FAQYLVPTMRN 105 (202)
Q Consensus 33 vl~A~~~~--glkv~lgv~n~~~~---~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~--~~~~l~~~i~~ 105 (202)
-++.++.. |+||++.+...... .+..+.+...+.++ ++..+...-.+.+|-+==|.....+ ....++..|+.
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 45666654 99999988742111 23334333333322 2222221123445544445543321 25788999999
Q ss_pred HHHHHHhCCC
Q 038030 106 IQNAIDGANL 115 (202)
Q Consensus 106 v~~aL~~~gl 115 (202)
+|++|...++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999987654
No 58
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.95 E-value=87 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.364 Sum_probs=37.0
Q ss_pred eEEEecCC-----hHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCC
Q 038030 23 RMRLYDPN-----REALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPG 92 (202)
Q Consensus 23 ~vRiY~~d-----~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~ 92 (202)
..+|||+- +.+.++....-..++|..-...-.++.. ...|++ +|..+.+. .+..+.|||-.=..
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen----i~~W~~-~I~e~a~~-~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN----IRNWIK-NIDEHASD-DVVKILVGNKCDLE 130 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH----HHHHHH-HHHhhCCC-CCcEEEeecccccc
Confidence 46788875 3466666555555555543323333332 445654 55565543 67889999976443
No 59
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.97 E-value=1.4e+02 Score=22.39 Aligned_cols=21 Identities=5% Similarity=0.161 Sum_probs=11.5
Q ss_pred CCChHHHHHHHHhCCCCeEEE
Q 038030 6 LPSKPDVIALYNQNNIRRMRL 26 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRi 26 (202)
.|++++.++-|...|+++|-+
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V 75 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIV 75 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEE
Confidence 455555555555555555544
No 60
>PRK05309 30S ribosomal protein S11; Validated
Probab=37.96 E-value=93 Score=23.74 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCeEEEe--cCC---hHHHHHhhcCCCeEE
Q 038030 10 PDVIALYNQNNIRRMRLY--DPN---REALEAFRGSNFEVM 45 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~d---~~vl~A~~~~glkv~ 45 (202)
+.+.+.++..|++.|+++ +.. ..+|.++...|+++.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445556677899999998 332 458899998999864
No 61
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=37.96 E-value=47 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=12.4
Q ss_pred CCC-CcEEEccccCCCC
Q 038030 141 GGS-LDIVISESGWPAA 156 (202)
Q Consensus 141 ~~~-~~vvV~ETGWPs~ 156 (202)
|++ .+|+|+|.|+...
T Consensus 365 Y~~~~pi~ITENG~~~~ 381 (469)
T PRK13511 365 YPNYKKIYITENGLGYK 381 (469)
T ss_pred cCCCCCEEEecCCcCCC
Confidence 455 5799999999744
No 62
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.45 E-value=1.2e+02 Score=23.05 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.3
Q ss_pred HHHHHhhcCCCe
Q 038030 32 EALEAFRGSNFE 43 (202)
Q Consensus 32 ~vl~A~~~~glk 43 (202)
.+++++.+++-.
T Consensus 44 ~~v~aa~e~~ad 55 (132)
T TIGR00640 44 EIARQAVEADVH 55 (132)
T ss_pred HHHHHHHHcCCC
Confidence 344444444443
No 63
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=37.17 E-value=24 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred ChHHHHHHHHhCC---CCeEEEecCChHH
Q 038030 8 SKPDVIALYNQNN---IRRMRLYDPNREA 33 (202)
Q Consensus 8 s~~~v~~llk~~~---~~~vRiY~~d~~v 33 (202)
.|+++..+|+... -.++||||+|..+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 4788888888643 3689999998643
No 64
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=36.45 E-value=2.4e+02 Score=23.21 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCC-----------hHHHHHhhcCCCeEEecCCC-----chhHHhhhhHHHHHHHHHH
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPN-----------REALEAFRGSNFEVMPGLPN-----DDLRRISSTQAEANTWVQE 69 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d-----------~~vl~A~~~~glkv~lgv~n-----~~~~~~a~~~~~a~~wv~~ 69 (202)
.|++ ...+.||+.|+..|=.|=.+ +.=++.+...|++++. |+. +.....+.....|.+-++.
T Consensus 20 ~~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~ 97 (212)
T cd06418 20 QPTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAA 97 (212)
T ss_pred cCCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHH
Confidence 3555 56777899999887777332 2356788889999865 222 1111222333444444554
Q ss_pred hhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHhCCCC
Q 038030 70 NVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDGANLG 116 (202)
Q Consensus 70 ~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~~gl~ 116 (202)
+...-.|...+.++.|-...... +....++||++-+.++|...||.
T Consensus 98 A~~lG~p~gs~IYfavD~d~~~~-~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 98 ARALGFPPGTIIYFAVDFDALDD-EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHHcCCCCCCEEEEEeecCCCcc-hhHHHHHHHHHHHHHHHHhcCCc
Confidence 44444564445567775444321 24578999999999999999873
No 65
>PRK03941 NTPase; Reviewed
Probab=35.81 E-value=2.3e+02 Score=22.81 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.3
Q ss_pred CeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHHHh
Q 038030 42 FEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAIDG 112 (202)
Q Consensus 42 lkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL~~ 112 (202)
++|.+|-.|.- ...+ ++.....++|...|.++.|-+.+-...-.-+.+..|+++++.+++.
T Consensus 1 m~V~VGS~NPv------Ki~A----v~~af~~~~~~~~v~~v~v~SgV~~QP~geET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNPV------KVEA----VENVFGKIFDDVEVVGVEVDSGVPDQPFGEETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCHH------HHHH----HHHHHHHhCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 46788877621 1122 3333444566656777777666633211568889999999999985
No 66
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=35.74 E-value=1.7e+02 Score=25.18 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=44.6
Q ss_pred HHHhhc--CCCeEEecCCC----chhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCC-CcHhhHHHHHHHH
Q 038030 34 LEAFRG--SNFEVMPGLPN----DDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGD-DFAQYLVPTMRNI 106 (202)
Q Consensus 34 l~A~~~--~glkv~lgv~n----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~-~~~~~l~~~i~~v 106 (202)
+.+++. .++||++.|.. +....+..+.....++++ ++..+...-.+.+|-+==|..... .....+...|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 455554 49999998864 234445554443333333 222222222456666655554432 2345678889999
Q ss_pred HHHHHhC
Q 038030 107 QNAIDGA 113 (202)
Q Consensus 107 ~~aL~~~ 113 (202)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 67
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=35.27 E-value=2.2e+02 Score=25.25 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHhCCCCeEEEec------CCh------HHHHH-hh-----cCCCeEEecCCCchhHHhhhhHHHHHHHH
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYD------PNR------EALEA-FR-----GSNFEVMPGLPNDDLRRISSTQAEANTWV 67 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~------~d~------~vl~A-~~-----~~glkv~lgv~n~~~~~~a~~~~~a~~wv 67 (202)
++....|-+..+.+|.+-+.++- .|- .+.+- +. .+.++|.+|-.|.- . ..-+
T Consensus 96 ~~~~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~~g~~~~~~~V~VGS~NPv------K----i~Av 165 (322)
T PRK01170 96 YQRALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDGNGKRLKPLKINISTTNPA------K----INAV 165 (322)
T ss_pred cccHHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccccCCcCCCcEEEEeCCChH------H----HHHH
Confidence 55666777777888887544442 221 22221 11 24688999987621 1 1123
Q ss_pred HHhhhhccCCce-EEEEEecCCCCCCCC-cHhhHHHHHHHHHHHHHhC
Q 038030 68 QENVQNFVNNVK-FKCIAVGNEAKPGDD-FAQYLVPTMRNIQNAIDGA 113 (202)
Q Consensus 68 ~~~v~~~~~~~~-i~~I~VGNE~l~~~~-~~~~l~~~i~~v~~aL~~~ 113 (202)
+.....++|... |.++.|-+. ..+. ..+.+..|+++++.++..+
T Consensus 166 ~~af~~~f~~~~~v~~v~v~Sg--~~QP~~eET~~GA~nRA~~a~~~a 211 (322)
T PRK01170 166 RRFFESLMKNFIVVKNIDYKLE--TQQPFGEETMKGATNRAMKALKDN 211 (322)
T ss_pred HHHHHHhcCCCceEEEeeCCCC--CCCCCcHHHHHHHHHHHHHHHhcC
Confidence 344455566543 888888888 3333 5788899999999999854
No 68
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.26 E-value=81 Score=28.61 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEccccCCCCCCC-C---CCCCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEE
Q 038030 138 TAGGGSLDIVISESGWPAAGGD-G---ALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFA 196 (202)
Q Consensus 138 ~~g~~~~~vvV~ETGWPs~G~~-~---~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~ 196 (202)
..|.+..+|+.+ |||.|.- + ...|.+.++..+.++++.+.+-.| ..++||++
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~----~~~I~ilA 197 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKP----VKRIYLLA 197 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCC----CceEEEEE
Confidence 345677888887 9999986 2 356667777778888887732111 34566664
No 69
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.30 E-value=1.9e+02 Score=21.26 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=7.2
Q ss_pred cHhhHHHHHHH
Q 038030 95 FAQYLVPTMRN 105 (202)
Q Consensus 95 ~~~~l~~~i~~ 105 (202)
++++++.+|++
T Consensus 112 ~~~~~~~~~~~ 122 (122)
T cd02071 112 SIEEIIDKIRD 122 (122)
T ss_pred CHHHHHHHHhC
Confidence 56777777653
No 70
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.62 E-value=1.5e+02 Score=27.20 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCeEEEe--cCChHH----------------HHHhhc-----CCCeEEecCCCchhHHhhhhHHHHHHH
Q 038030 10 PDVIALYNQNNIRRMRLY--DPNREA----------------LEAFRG-----SNFEVMPGLPNDDLRRISSTQAEANTW 66 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY--~~d~~v----------------l~A~~~-----~glkv~lgv~n~~~~~~a~~~~~a~~w 66 (202)
.+-.+.|+..|+++|=+- +-+.++ +..+++ -++.++.|+|.+.++.+.++.+.+..
T Consensus 137 ~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~- 215 (416)
T COG0635 137 AEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALE- 215 (416)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHh-
Confidence 455667777888876554 222222 222232 34557888888777776655444322
Q ss_pred HHHhhhhccCC-ceEEEEEec-CCCCCC----CC---cHhhHHHHHHHHHHHHHhCCCCCCeeee
Q 038030 67 VQENVQNFVNN-VKFKCIAVG-NEAKPG----DD---FAQYLVPTMRNIQNAIDGANLGSQIKVS 122 (202)
Q Consensus 67 v~~~v~~~~~~-~~i~~I~VG-NE~l~~----~~---~~~~l~~~i~~v~~aL~~~gl~~~I~Vs 122 (202)
.-|+ ..+...++- +-.+.+ +. ..+..+.-.+.+.+.|.++|+. ++-++
T Consensus 216 -------l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~-~yeis 272 (416)
T COG0635 216 -------LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR-QYEIS 272 (416)
T ss_pred -------CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCc-EEeec
Confidence 1232 223333332 222222 11 3456677888999999999993 45444
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.46 E-value=2.8e+02 Score=22.91 Aligned_cols=84 Identities=11% Similarity=0.289 Sum_probs=52.1
Q ss_pred ChHHHHHHHHhCCCCeEEEecCC---hHHHHHhhc--CCCeEEe--cCCCchhHHhhhhHHHHHHHHHHhhhhccCCceE
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPN---REALEAFRG--SNFEVMP--GLPNDDLRRISSTQAEANTWVQENVQNFVNNVKF 80 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d---~~vl~A~~~--~glkv~l--gv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i 80 (202)
||+|+.+.++ .|.+.|++|-++ ...|+++++ .+++++. |+. .+.+..|++ ...
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI~----------~~N~~~~l~---------aGa 177 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGVN----------LDNVKDWFA---------AGA 177 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCCC----------HHHHHHHHH---------CCC
Confidence 6788888775 889999999654 466777764 3466653 333 122344543 235
Q ss_pred EEEEecCCCCCCCC--cHhhHHHHHHHHHHHHH
Q 038030 81 KCIAVGNEAKPGDD--FAQYLVPTMRNIQNAID 111 (202)
Q Consensus 81 ~~I~VGNE~l~~~~--~~~~l~~~i~~v~~aL~ 111 (202)
..+.+|+..+.... ..+.+-...+.+.++++
T Consensus 178 ~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 178 DAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred cEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 77888888765421 34556666666655554
No 72
>PHA02754 hypothetical protein; Provisional
Probab=33.45 E-value=35 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHhCCC-CCCeeeee
Q 038030 97 QYLVPTMRNIQNAIDGANL-GSQIKVST 123 (202)
Q Consensus 97 ~~l~~~i~~v~~aL~~~gl-~~~I~Vst 123 (202)
...-.+|+++|..|+.+|+ -++|++-|
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~ 41 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAIT 41 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEE
Confidence 3456799999999999995 33466554
No 73
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.12 E-value=2.2e+02 Score=23.27 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh---------HHH-HHhhcCCCeEEecCC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR---------EAL-EAFRGSNFEVMPGLP 49 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~---------~vl-~A~~~~glkv~lgv~ 49 (202)
..|.++++.+.+.|++.+=+.|-+. ..+ +.++..++++.+|=.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GG 84 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGG 84 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCC
Confidence 3678888888888998877776541 234 445678899999644
No 74
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.97 E-value=2.8e+02 Score=22.84 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCCeEEEecCC----hHHHHHhhc--CCCeEEe--cCCCchhHHhhhhHHHHHHHHHHhhhhccCCce
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPN----REALEAFRG--SNFEVMP--GLPNDDLRRISSTQAEANTWVQENVQNFVNNVK 79 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d----~~vl~A~~~--~glkv~l--gv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~ 79 (202)
||+|+.+.++ .|.+.|++|=++ +..++++++ .++++|- ||. .+....|++. .
T Consensus 110 TptEi~~A~~-~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGGV~----------~~N~~~~l~a---------G 169 (204)
T TIGR01182 110 TPSEIMLALE-LGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGGIN----------LANVRDYLAA---------P 169 (204)
T ss_pred CHHHHHHHHH-CCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCCCC----------HHHHHHHHhC---------C
Confidence 7899888887 789999999655 677888885 5777764 332 1234556541 2
Q ss_pred EEEEEecCCCCCC
Q 038030 80 FKCIAVGNEAKPG 92 (202)
Q Consensus 80 i~~I~VGNE~l~~ 92 (202)
...+.+|+..+..
T Consensus 170 a~~vg~Gs~L~~~ 182 (204)
T TIGR01182 170 NVACGGGSWLVPK 182 (204)
T ss_pred CEEEEEChhhcCc
Confidence 4678888887754
No 75
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=32.84 E-value=2.1e+02 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCeeeee
Q 038030 97 QYLVPTMRNIQNAIDGANLGSQIKVST 123 (202)
Q Consensus 97 ~~l~~~i~~v~~aL~~~gl~~~I~Vst 123 (202)
+....-...+++.|.++||. +..++.
T Consensus 227 ~~~~~~~~~~~~~L~~~Gy~-~yeisn 252 (400)
T PRK07379 227 ETTAAMYRLAQEILTQAGYE-HYEISN 252 (400)
T ss_pred HHHHHHHHHHHHHHHHcCCc-eeeeeh
Confidence 44455667788999999995 565553
No 76
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=32.81 E-value=69 Score=29.63 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred hHHHHH-HHH---hCCCCeEEEecCC--h----HHHHHhhcCCCeEEecCC
Q 038030 9 KPDVIA-LYN---QNNIRRMRLYDPN--R----EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 9 ~~~v~~-llk---~~~~~~vRiY~~d--~----~vl~A~~~~glkv~lgv~ 49 (202)
+++||+ +.+ .||++.+|+||+- . ..++|.+++|..+-..+-
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 577777 333 4999999999984 2 357888889887765553
No 77
>PRK09936 hypothetical protein; Provisional
Probab=32.61 E-value=82 Score=27.67 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=55.1
Q ss_pred hHHHHH---HHHhCCCCeEEE-e----cCC--------hHHHHHhhcCCCeEEecCCCch--hHHhhhhHHHHHHHHHHh
Q 038030 9 KPDVIA---LYNQNNIRRMRL-Y----DPN--------REALEAFRGSNFEVMPGLPNDD--LRRISSTQAEANTWVQEN 70 (202)
Q Consensus 9 ~~~v~~---llk~~~~~~vRi-Y----~~d--------~~vl~A~~~~glkv~lgv~n~~--~~~~a~~~~~a~~wv~~~ 70 (202)
+++=-+ .++..|++.+=+ | +.| .+.|+++.+.|++|.||++-|. ...+..+.+.-+.|++..
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q~~~~d~~~~~~yl~~~ 116 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFMHQKQDGAALESYLNRQ 116 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHHHHhcCchhHHHHHHHH
Confidence 444444 445678876543 2 222 3578888999999999999652 333333333334455432
Q ss_pred hhhc---------cCCceE--EEEEecCCCCC-CCC-cHhhHHHHHHHHHHHHH
Q 038030 71 VQNF---------VNNVKF--KCIAVGNEAKP-GDD-FAQYLVPTMRNIQNAID 111 (202)
Q Consensus 71 v~~~---------~~~~~i--~~I~VGNE~l~-~~~-~~~~l~~~i~~v~~aL~ 111 (202)
.... .++..+ -||.+-=|... .+. --+.|+..++++.+.|.
T Consensus 117 l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 117 LGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 2111 011222 35555444321 222 34567777787777765
No 78
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.33 E-value=1.3e+02 Score=26.78 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred hHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcHhhHHHHHHHHHHHH
Q 038030 31 REALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFAQYLVPTMRNIQNAI 110 (202)
Q Consensus 31 ~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL 110 (202)
..||+++-.+|-.+.+|=.. .+.. .++.|..|+.+.+..++ ..|.+|+--|.-... .+| ++|
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------GaI----~aL 236 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------GAI----AAL 236 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------HHH----HHH
Confidence 36888888777655566532 1122 34567788887777765 358888776663322 223 578
Q ss_pred HhCCCCCCeeeeeee
Q 038030 111 DGANLGSQIKVSTAI 125 (202)
Q Consensus 111 ~~~gl~~~I~Vst~~ 125 (202)
++.||+++++||--+
T Consensus 237 ~a~Gl~g~vpVsGQD 251 (341)
T COG4213 237 KAQGLAGKVPVSGQD 251 (341)
T ss_pred HhcccCCCCcccCcc
Confidence 889999999988543
No 79
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=30.90 E-value=1e+02 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCeEEEe--cC--ChHHHHHhhcCCCeEEe
Q 038030 11 DVIALYNQNNIRRMRLY--DP--NREALEAFRGSNFEVMP 46 (202)
Q Consensus 11 ~v~~llk~~~~~~vRiY--~~--d~~vl~A~~~~glkv~l 46 (202)
.+++..+..|+..|.++ ++ -..+|+++...|++|..
T Consensus 171 ~aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~ 210 (233)
T PTZ00090 171 NIAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQ 210 (233)
T ss_pred HHHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEE
Confidence 34445566899998888 22 35689999999999864
No 80
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=30.63 E-value=1.6e+02 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=34.0
Q ss_pred ChHHHHH----HHHhCCCCeEEEecCC---hHHHHHhhcCCCeEE--ecCCCc
Q 038030 8 SKPDVIA----LYNQNNIRRMRLYDPN---REALEAFRGSNFEVM--PGLPND 51 (202)
Q Consensus 8 s~~~v~~----llk~~~~~~vRiY~~d---~~vl~A~~~~glkv~--lgv~n~ 51 (202)
|+++.++ +++..|...|+|=+.. ..+++++...||+|| +|+..+
T Consensus 111 s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQ 163 (332)
T PLN02424 111 STDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQ 163 (332)
T ss_pred CHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccce
Confidence 6777544 7788899999999873 357888889999999 666543
No 81
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=30.54 E-value=2.7e+02 Score=22.95 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=45.6
Q ss_pred CChHHHHHHHHhCCCCeEEEecCC--------hHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCc
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPN--------REALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNV 78 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d--------~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 78 (202)
.+|.++++.+.+.|++.+=+.|.| .++++.+++. +++.+|-....+.. +.++... . .
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~-~~v~vgGGirs~e~-------~~~~~~~-----l--~ 100 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKR-VELIADCGVRSPED-------LETLPFT-----L--E 100 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhh-CcEEEcCccCCHHH-------HHHHHhh-----h--c
Confidence 578999999988999999888876 2477777654 57777766433322 2232110 0 0
Q ss_pred eEEEEEecCCCCCC
Q 038030 79 KFKCIAVGNEAKPG 92 (202)
Q Consensus 79 ~i~~I~VGNE~l~~ 92 (202)
....|++|+|.+.+
T Consensus 101 ~a~rvvigT~a~~~ 114 (221)
T TIGR00734 101 FASRVVVATETLDI 114 (221)
T ss_pred cceEEeecChhhCC
Confidence 14556788888754
No 82
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=29.49 E-value=3.7e+02 Score=23.15 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=34.1
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh------HHHHHhhcCCCeEEecCC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR------EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~------~vl~A~~~~glkv~lgv~ 49 (202)
.+|.++++.++..|++.+-+=|.|. +++++++.++++|-+|=.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~~~~~vqvGGG 91 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRAYPGGLQVGGG 91 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHhCCCCEEEeCC
Confidence 5799999999999999888887663 577777667788888644
No 83
>PLN02998 beta-glucosidase
Probab=28.72 E-value=76 Score=29.81 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCCcEEEccccCCCCCCC--CCCCCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEeec
Q 038030 141 GGSLDIVISESGWPAAGGD--GALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFAIFD 199 (202)
Q Consensus 141 ~~~~~vvV~ETGWPs~G~~--~~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~~Fd 199 (202)
|++.+|+|+|-|+....+. ...-=.+--+.+++.+.+.+..|-+.+- +|.-++.|
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~G----Y~~WSl~D 446 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKG----YFQWSLMD 446 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEE----Eeeccchh
Confidence 3555799999999865311 1001122334444444444445654332 45555554
No 84
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=28.60 E-value=1.1e+02 Score=31.35 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCCh-----HHHHHhhcCCCeEEecCC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPNR-----EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d~-----~vl~A~~~~glkv~lgv~ 49 (202)
.-+++++++..+..|++.|-|-|-+. +..+++...|+|.++|+-
T Consensus 18 ~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~E 66 (973)
T PRK07135 18 TIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLD 66 (973)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEE
Confidence 34689999999999999999998773 456777889999999874
No 85
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=28.16 E-value=1.2e+02 Score=32.51 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHhCCCCeEEEecCC-----hHHHHHhhcCCCeEEecCC
Q 038030 4 DNLPSKPDVIALYNQNNIRRMRLYDPN-----REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 4 ~~lps~~~v~~llk~~~~~~vRiY~~d-----~~vl~A~~~~glkv~lgv~ 49 (202)
|-.-+|+++++..+..|.+.|=|-|-+ ++...+++..|++++.|+=
T Consensus 347 Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE 397 (1437)
T PRK00448 347 DAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVE 397 (1437)
T ss_pred ccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeee
Confidence 445689999999999999999999876 4567777889999999984
No 86
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=28.05 E-value=1.5e+02 Score=23.42 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCeEEEec------------CC-hHHHHHhhcCCCeEEe
Q 038030 10 PDVIALYNQNNIRRMRLYD------------PN-REALEAFRGSNFEVMP 46 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~------------~d-~~vl~A~~~~glkv~l 46 (202)
+++++.++..|++.|+++= +. ...|++|...||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4455666778999887774 22 3589999999999853
No 87
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.90 E-value=3e+02 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHhhcCCCeEEecCCC
Q 038030 32 EALEAFRGSNFEVMPGLPN 50 (202)
Q Consensus 32 ~vl~A~~~~glkv~lgv~n 50 (202)
.+|+++...||||++|++.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHcCCEEEEeCCC
Confidence 5789999999999999984
No 88
>PLN02814 beta-glucosidase
Probab=27.82 E-value=76 Score=29.84 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=27.8
Q ss_pred CCCCcEEEccccCCCCCCC--CCCCCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEeec
Q 038030 141 GGSLDIVISESGWPAAGGD--GALTNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFAIFD 199 (202)
Q Consensus 141 ~~~~~vvV~ETGWPs~G~~--~~~as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~~Fd 199 (202)
|++.+|+|+|-|+....+. ...-=.+--+.+++.+.+.+..|-|.+- +|.-++.|
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~G----Y~~WSllD 441 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRG----YFVWSMID 441 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEE----Eeeccchh
Confidence 4556899999999754311 1001122333444444444445654432 55555554
No 89
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.58 E-value=2.5e+02 Score=24.95 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCeEEEecCC---hHHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHH
Q 038030 10 PDVIALYNQNNIRRMRLYDPN---REALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQ 68 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~~d---~~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~ 68 (202)
.+-+++|.+.++..++|=+.+ -..|++++.+|.+|+|...-..+.. ...|..+++
T Consensus 99 ~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~E----i~~Av~~i~ 156 (329)
T TIGR03569 99 LESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEE----IEAAVGVLR 156 (329)
T ss_pred HHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHH----HHHHHHHHH
Confidence 455778888889999988765 4689999999999999877544443 344566655
No 90
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.73 E-value=2.3e+02 Score=23.20 Aligned_cols=38 Identities=16% Similarity=0.454 Sum_probs=29.3
Q ss_pred ChHHHHHHHHhCCCCeEEEecCC----hHHHHHhhc--CCCeEEe
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPN----REALEAFRG--SNFEVMP 46 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d----~~vl~A~~~--~glkv~l 46 (202)
||+|+.+.++ .|++.||+|=++ +..++++++ .++++|.
T Consensus 110 TptEi~~A~~-~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~p 153 (196)
T PF01081_consen 110 TPTEIMQALE-AGADIVKLFPAGALGGPSYIKALRGPFPDLPFMP 153 (196)
T ss_dssp SHHHHHHHHH-TT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEE
T ss_pred CHHHHHHHHH-CCCCEEEEecchhcCcHHHHHHHhccCCCCeEEE
Confidence 7899988887 789999999665 578898886 4777765
No 91
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=2e+02 Score=23.11 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=44.6
Q ss_pred EEEecCCh-HHHHHh-----h-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEecCCCCCCCCcH
Q 038030 24 MRLYDPNR-EALEAF-----R-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVGNEAKPGDDFA 96 (202)
Q Consensus 24 vRiY~~d~-~vl~A~-----~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~ 96 (202)
+.|||+.. +.++.+ + .-|+-+|.-+.|+. +..+.++|+- ...+|.+.++.-|.|||.-=...+
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~t--qIktysw~naqvilvgnKCDmd~e-- 141 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWIT--QIKTYSWDNAQVILVGNKCDMDSE-- 141 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHH--HheeeeccCceEEEEecccCCccc--
Confidence 45677763 333322 2 24666777777732 2233567754 234467889999999997543322
Q ss_pred hhHHHHHHHHHHHHHhCCC
Q 038030 97 QYLVPTMRNIQNAIDGANL 115 (202)
Q Consensus 97 ~~l~~~i~~v~~aL~~~gl 115 (202)
.+++ .+..+.....+|+
T Consensus 142 -Rvis-~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 142 -RVIS-HERGRQLADQLGF 158 (193)
T ss_pred -eeee-HHHHHHHHHHhCh
Confidence 2222 3445555555555
No 92
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=25.98 E-value=90 Score=28.40 Aligned_cols=105 Identities=8% Similarity=0.166 Sum_probs=58.0
Q ss_pred CChHHHHHHHHh-CCCCeEEEecC------------ChHHHHHhhcCCCeEEe--------cCCCchhHHh------hhh
Q 038030 7 PSKPDVIALYNQ-NNIRRMRLYDP------------NREALEAFRGSNFEVMP--------GLPNDDLRRI------SST 59 (202)
Q Consensus 7 ps~~~v~~llk~-~~~~~vRiY~~------------d~~vl~A~~~~glkv~l--------gv~n~~~~~~------a~~ 59 (202)
|+.+|-.+..+. ..-+.++++|. |...++-|.+-|..+.| |++-+....+ +..
T Consensus 215 Pt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~ 294 (427)
T KOG1411|consen 215 PTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADE 294 (427)
T ss_pred ccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHH
Confidence 666665554332 11245555543 34567888877888776 4443322211 222
Q ss_pred HHHHHHHHHHhhhhccC-----CceEEEEEecCCCCCCCC--cHhhHHHHHHHHHHHHH
Q 038030 60 QAEANTWVQENVQNFVN-----NVKFKCIAVGNEAKPGDD--FAQYLVPTMRNIQNAID 111 (202)
Q Consensus 60 ~~~a~~wv~~~v~~~~~-----~~~i~~I~VGNE~l~~~~--~~~~l~~~i~~v~~aL~ 111 (202)
.....+-++--|++-|. +.+|...++.|..|.... ....+..-|..+|+.|.
T Consensus 295 A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~ 353 (427)
T KOG1411|consen 295 AKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLF 353 (427)
T ss_pred HHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 23345556666666552 356777777887777643 34555556666666664
No 93
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.96 E-value=1.8e+02 Score=24.82 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHhCCCCeEEEecCCh------HHHHHhhcCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCCceEEEEEec
Q 038030 13 IALYNQNNIRRMRLYDPNR------EALEAFRGSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNNVKFKCIAVG 86 (202)
Q Consensus 13 ~~llk~~~~~~vRiY~~d~------~vl~A~~~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VG 86 (202)
++.....|++.||++..-. ..++.+++.|+++...+--.+.. ..+++....+++... . .+.+. |.+.
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~--~~~~~~~~~~~~~~~-~-~Ga~~---i~l~ 169 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSP--VHTLEYYVKLAKELE-D-MGADS---ICIK 169 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--CCCHHHHHHHHHHHH-H-cCCCE---EEEc
Confidence 3344457899999997642 24466678899987655210000 011222222322222 2 12222 3222
Q ss_pred CCCCCCCC-cHhhHHHHHHHHHHHH
Q 038030 87 NEAKPGDD-FAQYLVPTMRNIQNAI 110 (202)
Q Consensus 87 NE~l~~~~-~~~~l~~~i~~v~~aL 110 (202)
.-+ |- .+.++-..++.+++.+
T Consensus 170 DT~---G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 170 DMA---GLLTPYAAYELVKALKKEV 191 (275)
T ss_pred CCC---CCCCHHHHHHHHHHHHHhC
Confidence 111 23 6777778888888765
No 94
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.70 E-value=91 Score=25.62 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=24.2
Q ss_pred CCCCCChHHHHHHH----HhCCCCeEEEecCCh
Q 038030 3 GDNLPSKPDVIALY----NQNNIRRMRLYDPNR 31 (202)
Q Consensus 3 ~~~lps~~~v~~ll----k~~~~~~vRiY~~d~ 31 (202)
+.+..+|.+|++-| |+.|++.|||=++.|
T Consensus 70 ag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP 102 (228)
T COG5014 70 AGDFLSPEEVAERLLEISKKRGCDLVRISGAEP 102 (228)
T ss_pred cccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc
Confidence 34567899999976 789999999998874
No 95
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=25.55 E-value=2.1e+02 Score=26.56 Aligned_cols=91 Identities=14% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHHhhc--CCCeEEe--cCCCc--hhHHhhhhHHHHHHHHHHhhhhccCCceEEEEE--------ecCCCCCC-CCcHh
Q 038030 33 ALEAFRG--SNFEVMP--GLPND--DLRRISSTQAEANTWVQENVQNFVNNVKFKCIA--------VGNEAKPG-DDFAQ 97 (202)
Q Consensus 33 vl~A~~~--~glkv~l--gv~n~--~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~--------VGNE~l~~-~~~~~ 97 (202)
.|..++. +.+|+.+ |=|.+ ....++++.+..+..+++.|.- ++.-.+.+|= .|++-..+ .+..+
T Consensus 116 ~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~-~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ 194 (441)
T COG3325 116 ALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEF-MRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKA 194 (441)
T ss_pred HHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHH-HHhcCCCceeeccccCCCCCCCCCCCCcccHH
Confidence 4555543 4456555 44653 4666677766666666655532 2212244442 23333322 12567
Q ss_pred hHHHHHHHHHHHHHhCCCCC--Ceeeeee
Q 038030 98 YLVPTMRNIQNAIDGANLGS--QIKVSTA 124 (202)
Q Consensus 98 ~l~~~i~~v~~aL~~~gl~~--~I~Vst~ 124 (202)
..+--|+.+|++|-.+|.++ +..+|++
T Consensus 195 ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA 223 (441)
T COG3325 195 NYVLLLQELRKKLDKAGVEDGRHYQLTIA 223 (441)
T ss_pred HHHHHHHHHHHHHhhcccccCceEEEEEe
Confidence 78888999999999999876 4666665
No 96
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.27 E-value=4e+02 Score=22.21 Aligned_cols=67 Identities=18% Similarity=0.390 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhCCCCeEEEecCC---hHHHHHhhc--CCCeEEe--cCCCchhHHhhhhHHHHHHHHHHhhhhccCCceE
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPN---REALEAFRG--SNFEVMP--GLPNDDLRRISSTQAEANTWVQENVQNFVNNVKF 80 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d---~~vl~A~~~--~glkv~l--gv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i 80 (202)
||+|+.+.++ .|.+.|++|=++ +.-++++++ .+++++- ||.. +.+....|++. ..
T Consensus 121 TpsEi~~A~~-~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~--------~~~n~~~yl~a---------Ga 182 (222)
T PRK07114 121 SLSEIGYAEE-LGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEP--------TEENLKKWFGA---------GV 182 (222)
T ss_pred CHHHHHHHHH-CCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCc--------chhcHHHHHhC---------CC
Confidence 7899988888 789999999654 677888885 5677655 4431 00123456542 34
Q ss_pred EEEEecCCCCCC
Q 038030 81 KCIAVGNEAKPG 92 (202)
Q Consensus 81 ~~I~VGNE~l~~ 92 (202)
..+.+|+..+..
T Consensus 183 ~avg~Gs~L~~~ 194 (222)
T PRK07114 183 TCVGMGSKLIPK 194 (222)
T ss_pred EEEEEChhhcCc
Confidence 677778777653
No 97
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.71 E-value=1.1e+02 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHhCCCC-eEEEecCC--hH----HHHHhhcCCCeEEecCC
Q 038030 4 DNLPSKPDVIALYNQNNIR-RMRLYDPN--RE----ALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 4 ~~lps~~~v~~llk~~~~~-~vRiY~~d--~~----vl~A~~~~glkv~lgv~ 49 (202)
.|+|..++..+.|+..|+. -+|+.++. ++ .++.+.+.|++|++.+-
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~A 61 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGA 61 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5778888999999998886 68998885 33 34444567899998775
No 98
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=24.69 E-value=2e+02 Score=25.53 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=52.9
Q ss_pred CChHHHHHhhcCCCeEEecCCCc------hhHHhhhh-----HHHHHHHHHHhhhhccCCceEEEEEecCCCCC-CCCcH
Q 038030 29 PNREALEAFRGSNFEVMPGLPND------DLRRISST-----QAEANTWVQENVQNFVNNVKFKCIAVGNEAKP-GDDFA 96 (202)
Q Consensus 29 ~d~~vl~A~~~~glkv~lgv~n~------~~~~~a~~-----~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~-~~~~~ 96 (202)
+.+..+.|+...|+||+-.+-.+ .+..+-.+ ...|.+.++ +..++ .+.++-+--|... .....
T Consensus 47 Pp~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~--lak~y---GfDGw~iN~E~~~~~~~~~ 121 (339)
T cd06547 47 PPADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVE--VAKYY---GFDGWLINIETELGDAEKA 121 (339)
T ss_pred CCcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHH--HHHHh---CCCceEeeeeccCCcHHHH
Confidence 34678899999999997666421 12222222 123333332 44454 3666777777765 22268
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCe
Q 038030 97 QYLVPTMRNIQNAIDGANLGSQI 119 (202)
Q Consensus 97 ~~l~~~i~~v~~aL~~~gl~~~I 119 (202)
+.|...++.+++.+...+-...|
T Consensus 122 ~~l~~F~~~L~~~~~~~~~~~~v 144 (339)
T cd06547 122 KRLIAFLRYLKAKLHENVPGSLV 144 (339)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEE
Confidence 89999999999999876554333
No 99
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=24.65 E-value=2.3e+02 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=17.1
Q ss_pred cHhhHHHHHHHHHHHHHhCCC
Q 038030 95 FAQYLVPTMRNIQNAIDGANL 115 (202)
Q Consensus 95 ~~~~l~~~i~~v~~aL~~~gl 115 (202)
..+.++.-|+.+|++|...++
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCc
Confidence 356688889999999988775
No 100
>PLN02849 beta-glucosidase
Probab=24.46 E-value=1e+02 Score=29.03 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCCCcEEEccccCCCCCCC-CCC---CCHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEeec
Q 038030 141 GGSLDIVISESGWPAAGGD-GAL---TNVDNAKTYNNNLIQHVKQGSPKKPRPIETYIFAIFD 199 (202)
Q Consensus 141 ~~~~~vvV~ETGWPs~G~~-~~~---as~~na~~y~~~~~~~~~~Gtp~rp~~~~~y~F~~Fd 199 (202)
|++.+|+|+|-|++..... +.+ -=.+--+.+++.+.+.+..|-+.+- +|..++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~G----Y~~WSl~D 441 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRG----YFVWSFMD 441 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEE----Eeeccchh
Confidence 4555899999999865421 100 1122334444444444445654432 55555555
No 101
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.21 E-value=2.6e+02 Score=23.49 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCC---------hHHHHHhh-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhcc
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPN---------REALEAFR-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFV 75 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d---------~~vl~A~~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~ 75 (202)
..+|.++++.+.+.|++.+=+.|.+ ..+++.+. ..+++|.+|=....+.. +..++.
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d-------~~~l~~------- 94 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQ-------AKKIFS------- 94 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHH-------HHHHHH-------
Confidence 4578999999999999999888765 24666665 47899998866433322 233321
Q ss_pred CCceEEEEEecCCCCCC
Q 038030 76 NNVKFKCIAVGNEAKPG 92 (202)
Q Consensus 76 ~~~~i~~I~VGNE~l~~ 92 (202)
..+..|++|.+.+.+
T Consensus 95 --~G~~~vvigs~~~~~ 109 (258)
T PRK01033 95 --LGVEKVSINTAALED 109 (258)
T ss_pred --CCCCEEEEChHHhcC
Confidence 135678889887654
No 102
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=23.78 E-value=2.6e+02 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHhCCCCeEEEecC------C----h-HHHHHhhcCCCeEEecCC
Q 038030 15 LYNQNNIRRMRLYDP------N----R-EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 15 llk~~~~~~vRiY~~------d----~-~vl~A~~~~glkv~lgv~ 49 (202)
.++..|+.-||++.. + . .+++++.+.|+.|++-+.
T Consensus 93 ~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 93 ALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred hccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeecc
Confidence 445688999999943 1 2 588999999999999854
No 103
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=23.18 E-value=1.6e+02 Score=30.51 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCCh-----HHHHHhhcCCCeEEecCC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPNR-----EALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d~-----~vl~A~~~~glkv~lgv~ 49 (202)
.-+++++++..+..|++.|=|-|-+. +..++++..|+++++|+-
T Consensus 20 ~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~E 68 (1046)
T PRK05672 20 ASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAE 68 (1046)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEE
Confidence 34689999999999999999988762 345677889999999873
No 104
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.79 E-value=3.1e+02 Score=20.82 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=20.0
Q ss_pred HHHHhCCCCeEEEecCC---hHHHHHhhcCCCeE
Q 038030 14 ALYNQNNIRRMRLYDPN---REALEAFRGSNFEV 44 (202)
Q Consensus 14 ~llk~~~~~~vRiY~~d---~~vl~A~~~~glkv 44 (202)
.+|+++||..|=+ +.+ .++++++.+.+-.+
T Consensus 25 ~~lr~~G~eVi~L-G~~vp~e~i~~~a~~~~~d~ 57 (137)
T PRK02261 25 RALTEAGFEVINL-GVMTSQEEFIDAAIETDADA 57 (137)
T ss_pred HHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCE
Confidence 3667888876622 333 56888888777764
No 105
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=22.61 E-value=1.7e+02 Score=29.65 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=35.5
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh-----HHHHHhhcCCCeEEecC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR-----EALEAFRGSNFEVMPGL 48 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~-----~vl~A~~~~glkv~lgv 48 (202)
-+++++++..+..|++.|=|-|-+. ...+++++.|++.++|+
T Consensus 19 ~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~ 65 (874)
T PRK09532 19 SQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGN 65 (874)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEE
Confidence 3578999999999999999998773 45678888999999997
No 106
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=22.26 E-value=6.4e+02 Score=24.20 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHhCCCCeEEEe------cCChHHHHHhhc---------CCCeEEecCCCchhHHhhhhHH--------
Q 038030 5 NLPSKPDVIALYNQNNIRRMRLY------DPNREALEAFRG---------SNFEVMPGLPNDDLRRISSTQA-------- 61 (202)
Q Consensus 5 ~lps~~~v~~llk~~~~~~vRiY------~~d~~vl~A~~~---------~glkv~lgv~n~~~~~~a~~~~-------- 61 (202)
-||--.||+.-|++.|.+.|.|= |.+.+.|+|+++ .|++|++..+-.+++.-+.+.-
T Consensus 185 iLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a~~~lk~L~~v~~ 264 (765)
T KOG2263|consen 185 ILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLLATYFADVPAEAYKTLKSLKGVTA 264 (765)
T ss_pred HhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceeehhhhccCCHHHHHHHhCCcceee
Confidence 46777899999999999888765 345678887763 6888988876433332111000
Q ss_pred ---------HHHHHHHHhhhhccCCceEEEEEecCCCCC-CCCcHhhHHHHHHHHHHHHHhCCCCCCeeeeeeee
Q 038030 62 ---------EANTWVQENVQNFVNNVKFKCIAVGNEAKP-GDDFAQYLVPTMRNIQNAIDGANLGSQIKVSTAIE 126 (202)
Q Consensus 62 ---------~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~-~~~~~~~l~~~i~~v~~aL~~~gl~~~I~Vst~~~ 126 (202)
...+.++. .+|.. +++.|| ++. |+-...++......++++....|-+ ++.|+|..+
T Consensus 265 ~~~D~VR~~e~lD~~~a----~~~~~--k~l~~G--vVdGRNIW~nDf~~s~a~l~k~~~~vG~d-kvvVstS~S 330 (765)
T KOG2263|consen 265 FGFDLVRGPETLDLVKA----GFPEG--KYLFAG--VVDGRNIWANDFAASLATLQKLEGIVGKD-KVVVSTSCS 330 (765)
T ss_pred eeeeeeechhhHHHHHh----cCCCC--ceEEEE--EeccchhhhhhHHHHHHHHHHHHHhhccc-eEEEeechh
Confidence 00011111 12221 223333 111 1114556666677777777777764 577888754
No 107
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=21.99 E-value=1.2e+02 Score=27.09 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecC
Q 038030 6 LPSKPDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGL 48 (202)
Q Consensus 6 lps~~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv 48 (202)
.|+.+++.++|++.||+.|++-+..+.-++..+..|+-+...|
T Consensus 234 ~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v 276 (340)
T PLN02490 234 FPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSV 276 (340)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEE
Confidence 5788999999999999999988877777777777776654444
No 108
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.96 E-value=2.6e+02 Score=19.69 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCC
Q 038030 10 PDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~ 49 (202)
.++++.|+.. -..|.+.+.|++..+.++..|.++..|=.
T Consensus 11 ~~i~~~L~~~-~~~vvvid~d~~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 11 REIAEQLKEG-GIDVVVIDRDPERVEELREEGVEVIYGDA 49 (116)
T ss_dssp HHHHHHHHHT-TSEEEEEESSHHHHHHHHHTTSEEEES-T
T ss_pred HHHHHHHHhC-CCEEEEEECCcHHHHHHHhcccccccccc
Confidence 4677777764 36788999999988888889999888765
No 109
>PRK00124 hypothetical protein; Validated
Probab=21.92 E-value=81 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=27.6
Q ss_pred EEe-cCC-h----HHHHHhhcCCCeEEe-cCCCchhH----------HhhhhHHHHHHHHHHhhh
Q 038030 25 RLY-DPN-R----EALEAFRGSNFEVMP-GLPNDDLR----------RISSTQAEANTWVQENVQ 72 (202)
Q Consensus 25 RiY-~~d-~----~vl~A~~~~glkv~l-gv~n~~~~----------~~a~~~~~a~~wv~~~v~ 72 (202)
+|| |+| | .+.+++..++++|++ .-.|..+. .+....++|..|+-+++.
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~ 66 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAE 66 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCC
Confidence 566 666 2 466788889999877 43333221 133344556666655543
No 110
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.91 E-value=2e+02 Score=19.84 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCeEEEecCChHHHHHhhcCCCeEEecCC
Q 038030 10 PDVIALYNQNNIRRMRLYDPNREALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 10 ~~v~~llk~~~~~~vRiY~~d~~vl~A~~~~glkv~lgv~ 49 (202)
..++++|++.+++.|=.=...+..+..+...|+++..+..
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC
Confidence 5667777777777664445556777777778888876654
No 111
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.59 E-value=4.5e+02 Score=21.43 Aligned_cols=83 Identities=12% Similarity=0.232 Sum_probs=47.4
Q ss_pred ChHHHHHHHHhCCCCeEEEecCC---hHHHHHhhc-C--CCeEEe--cCCCchhHHhhhhHHHHHHHHHHhhhhccCCce
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPN---REALEAFRG-S--NFEVMP--GLPNDDLRRISSTQAEANTWVQENVQNFVNNVK 79 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d---~~vl~A~~~-~--glkv~l--gv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~ 79 (202)
+++|+.+.++ .|.+.|.+|-++ ++.++.+++ . .++++. |+.. +....|++ ..
T Consensus 113 t~~E~~~A~~-~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI~~----------~n~~~~~~---------aG 172 (206)
T PRK09140 113 TPTEAFAALR-AGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAVGGVTP----------ENLAPYLA---------AG 172 (206)
T ss_pred CHHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEECCCCH----------HHHHHHHH---------CC
Confidence 5677666555 789999998765 456666654 2 477643 3431 12333433 24
Q ss_pred EEEEEecCCCCCCCCcHhhHHHHHHHHHHHH
Q 038030 80 FKCIAVGNEAKPGDDFAQYLVPTMRNIQNAI 110 (202)
Q Consensus 80 i~~I~VGNE~l~~~~~~~~l~~~i~~v~~aL 110 (202)
..+|.||+..+......+.+-...+.+++.+
T Consensus 173 a~~vav~s~l~~~~~~~~~i~~~a~~~~~~~ 203 (206)
T PRK09140 173 AAGFGLGSALYRPGQSAEEVAERARAFVAAY 203 (206)
T ss_pred CeEEEEehHhcccccChHHHHHHHHHHHHHH
Confidence 5788999888764222344444444444444
No 112
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=21.39 E-value=4.4e+02 Score=21.28 Aligned_cols=69 Identities=10% Similarity=0.186 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCCeEEEecCCh---------HHHHHhh-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccCC
Q 038030 8 SKPDVIALYNQNNIRRMRLYDPNR---------EALEAFR-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVNN 77 (202)
Q Consensus 8 s~~~v~~llk~~~~~~vRiY~~d~---------~vl~A~~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~ 77 (202)
+|.++++.|.+.|++.+=+.|-|. ++++.++ .+++++++|-...+... +..++. .
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed-------~~~~~~------~-- 93 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLED-------VEKLLD------L-- 93 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHH-------HHHHHH------c--
Confidence 689999999999999888887642 4566654 57889999766433322 233322 1
Q ss_pred ceEEEEEecCCCCCC
Q 038030 78 VKFKCIAVGNEAKPG 92 (202)
Q Consensus 78 ~~i~~I~VGNE~l~~ 92 (202)
....|++|.+.+..
T Consensus 94 -Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 94 -GVDRVIIGTAAVEN 107 (230)
T ss_pred -CCCEEEEChHHhhC
Confidence 23457889888854
No 113
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.10 E-value=4.4e+02 Score=21.96 Aligned_cols=70 Identities=7% Similarity=0.132 Sum_probs=45.8
Q ss_pred CChHHHHHHHHhCCCCeEEEecCCh---------HHHHHhh-cCCCeEEecCCCchhHHhhhhHHHHHHHHHHhhhhccC
Q 038030 7 PSKPDVIALYNQNNIRRMRLYDPNR---------EALEAFR-GSNFEVMPGLPNDDLRRISSTQAEANTWVQENVQNFVN 76 (202)
Q Consensus 7 ps~~~v~~llk~~~~~~vRiY~~d~---------~vl~A~~-~~glkv~lgv~n~~~~~~a~~~~~a~~wv~~~v~~~~~ 76 (202)
.+|.++++.++..|++.+=+.|.+. +++..++ ..+++|++|=...+.. .+.+++.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~-------d~~~~~~-------- 94 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIE-------DVDKLLR-------- 94 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHH-------HHHHHHH--------
Confidence 3688999999989999998888762 3555554 4688888854432222 2333322
Q ss_pred CceEEEEEecCCCCCC
Q 038030 77 NVKFKCIAVGNEAKPG 92 (202)
Q Consensus 77 ~~~i~~I~VGNE~l~~ 92 (202)
.....|+||.+.+.+
T Consensus 95 -~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 95 -AGADKVSINTAAVKN 109 (254)
T ss_pred -cCCCEEEEChhHhhC
Confidence 124567888888765
No 114
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=21.09 E-value=2e+02 Score=30.46 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=39.6
Q ss_pred CCCCChHHHHHHHHhCCCCeEEEecCC-----hHHHHHhhcCCCeEEecCC
Q 038030 4 DNLPSKPDVIALYNQNNIRRMRLYDPN-----REALEAFRGSNFEVMPGLP 49 (202)
Q Consensus 4 ~~lps~~~v~~llk~~~~~~vRiY~~d-----~~vl~A~~~~glkv~lgv~ 49 (202)
|-+||.++.++..+.-|.++|-|-|-+ |+.-.+++..|+|++-|+-
T Consensus 349 Dai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~E 399 (1444)
T COG2176 349 DAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLE 399 (1444)
T ss_pred cccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeee
Confidence 457899999999999999999998765 5677788889999999985
No 115
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.86 E-value=1.9e+02 Score=24.66 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=7.6
Q ss_pred HHHHhhcCCCeEEecC
Q 038030 33 ALEAFRGSNFEVMPGL 48 (202)
Q Consensus 33 vl~A~~~~glkv~lgv 48 (202)
++..++..||.|.|-+
T Consensus 115 ~i~~l~~~gI~VSLFi 130 (237)
T TIGR00559 115 LVKRFHAAGIEVSLFI 130 (237)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 4444444555544443
No 116
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=20.64 E-value=60 Score=28.52 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=25.0
Q ss_pred CCCcEEEccccCCCCCCCC--CCCCHHHHHHHHHHHHHHh-hcCCC
Q 038030 142 GSLDIVISESGWPAAGGDG--ALTNVDNAKTYNNNLIQHV-KQGSP 184 (202)
Q Consensus 142 ~~~~vvV~ETGWPs~G~~~--~~as~~na~~y~~~~~~~~-~~Gtp 184 (202)
+.-++++-|.|||+.|-.. .-.-.||+-.|+.-=+..+ ++..|
T Consensus 287 KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP 332 (359)
T KOG0524|consen 287 KTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVP 332 (359)
T ss_pred hhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCC
Confidence 4458999999999999641 0022345555554444444 34444
No 117
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=20.37 E-value=1.1e+02 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHhCCCCeEEEecCC
Q 038030 5 NLPSKPDVIALYNQNNIRRMRLYDPN 30 (202)
Q Consensus 5 ~lps~~~v~~llk~~~~~~vRiY~~d 30 (202)
.+||.+++.+.|++.||+.||+.+..
T Consensus 250 flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 250 FIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 46788888888888888888876654
No 118
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=20.12 E-value=1e+02 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.9
Q ss_pred CCCCCChHHHHHHHHhCCCCeEEEec
Q 038030 3 GDNLPSKPDVIALYNQNNIRRMRLYD 28 (202)
Q Consensus 3 ~~~lps~~~v~~llk~~~~~~vRiY~ 28 (202)
|.|..+-++..+.+...|++.||+|=
T Consensus 15 G~nki~MaeLr~~l~~~Gf~~V~Tyi 40 (137)
T PF08002_consen 15 GKNKIKMAELREALEDLGFTNVRTYI 40 (137)
T ss_dssp TBS---HHHHHHHHHHCT-EEEEEET
T ss_pred CCCcccHHHHHHHHHHcCCCCceEEE
Confidence 44666688889999999999999993
Done!