Query 038031
Match_columns 729
No_of_seqs 265 out of 3263
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.3E-33 1.6E-37 331.9 24.6 297 357-687 308-608 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-31 3.2E-36 320.7 27.5 503 99-687 70-585 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.6E-24 9.9E-29 217.4 3.5 359 230-684 81-450 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.3E-23 5E-28 212.3 7.4 335 294-710 100-447 (873)
5 PLN03210 Resistant to P. syrin 99.9 8.7E-21 1.9E-25 227.7 23.2 269 357-668 634-911 (1153)
6 PLN03210 Resistant to P. syrin 99.9 2.2E-20 4.8E-25 224.2 23.2 312 324-689 589-909 (1153)
7 KOG0618 Serine/threonine phosp 99.8 7.3E-24 1.6E-28 227.4 -8.2 264 324-662 219-488 (1081)
8 KOG0444 Cytoskeletal regulator 99.8 2.1E-23 4.6E-28 213.8 -6.4 146 527-688 231-377 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 1E-24 2.2E-29 212.8 -17.4 140 528-685 398-540 (565)
10 KOG0618 Serine/threonine phosp 99.8 2.9E-22 6.3E-27 215.3 -7.3 264 357-685 219-488 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 2.5E-22 5.3E-27 196.3 -15.8 452 92-668 62-544 (565)
12 KOG0444 Cytoskeletal regulator 99.7 1.2E-20 2.5E-25 193.9 -7.9 223 358-643 151-379 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 3.6E-15 7.9E-20 166.4 15.8 255 358-685 202-457 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 166.2 14.7 236 357-662 222-457 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.7E-18 155.3 11.4 245 357-661 178-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 2.1E-13 4.6E-18 153.4 10.3 247 381-687 178-429 (754)
17 KOG4237 Extracellular matrix p 99.2 1.1E-13 2.5E-18 136.1 -8.2 285 355-685 65-358 (498)
18 KOG0617 Ras suppressor protein 99.2 3.5E-13 7.7E-18 117.4 -5.4 142 528-685 66-211 (264)
19 KOG4237 Extracellular matrix p 99.2 1.9E-12 4.2E-17 127.5 -1.8 81 357-440 274-356 (498)
20 KOG0617 Ras suppressor protein 99.2 1.7E-12 3.7E-17 113.2 -2.8 141 528-684 43-184 (264)
21 KOG4341 F-box protein containi 99.1 9.3E-13 2E-17 130.9 -6.4 283 123-444 138-440 (483)
22 KOG4341 F-box protein containi 99.0 8.3E-12 1.8E-16 124.2 -4.0 284 249-604 139-438 (483)
23 cd00116 LRR_RI Leucine-rich re 99.0 3.6E-11 7.9E-16 125.6 -0.1 68 319-391 18-91 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 1.5E-11 3.2E-16 128.5 -3.7 140 537-684 161-318 (319)
25 PF14580 LRR_9: Leucine-rich r 98.8 3E-09 6.6E-14 97.7 2.3 128 538-683 16-150 (175)
26 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.9E-14 107.2 -0.7 215 321-578 118-340 (505)
27 KOG4658 Apoptotic ATPase [Sign 98.7 2.4E-08 5.3E-13 114.8 6.7 107 295-414 544-652 (889)
28 KOG1259 Nischarin, modulator o 98.6 8.2E-09 1.8E-13 98.5 -0.6 129 537-685 280-411 (490)
29 KOG1259 Nischarin, modulator o 98.5 6.1E-08 1.3E-12 92.7 2.4 118 528-664 294-413 (490)
30 KOG3207 Beta-tubulin folding c 98.5 3.6E-08 7.8E-13 99.3 0.6 210 30-262 117-340 (505)
31 PRK15386 type III secretion pr 98.5 8.4E-07 1.8E-11 91.6 10.4 59 625-688 155-215 (426)
32 PF14580 LRR_9: Leucine-rich r 98.5 1.2E-07 2.5E-12 87.3 3.6 105 562-686 17-126 (175)
33 KOG4658 Apoptotic ATPase [Sign 98.4 3.9E-07 8.4E-12 105.1 7.5 76 357-434 717-798 (889)
34 PRK15386 type III secretion pr 98.4 1.3E-06 2.7E-11 90.3 10.2 89 357-461 52-140 (426)
35 COG4886 Leucine-rich repeat (L 98.2 2.2E-06 4.8E-11 92.3 6.5 116 530-663 175-290 (394)
36 KOG2120 SCF ubiquitin ligase, 98.2 8.3E-08 1.8E-12 91.8 -4.4 179 228-440 186-373 (419)
37 COG4886 Leucine-rich repeat (L 98.1 1.8E-06 3.9E-11 93.0 4.5 149 511-685 141-289 (394)
38 KOG1909 Ran GTPase-activating 98.1 3.8E-07 8.3E-12 89.6 -1.1 70 318-391 235-308 (382)
39 KOG0532 Leucine-rich repeat (L 98.1 3E-07 6.6E-12 95.7 -2.4 123 542-683 144-270 (722)
40 PF13855 LRR_8: Leucine rich r 98.0 7.6E-06 1.7E-10 61.4 5.0 58 592-660 1-59 (61)
41 PF13855 LRR_8: Leucine rich r 98.0 6.9E-06 1.5E-10 61.7 4.0 58 542-603 2-60 (61)
42 KOG1859 Leucine-rich repeat pr 97.9 3.7E-07 7.9E-12 97.6 -6.8 126 540-685 163-291 (1096)
43 KOG0532 Leucine-rich repeat (L 97.8 2.4E-06 5.1E-11 89.2 -2.2 138 528-685 108-246 (722)
44 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-06 2.3E-11 84.4 -4.6 60 175-238 312-374 (419)
45 PLN03150 hypothetical protein; 97.7 4.1E-05 8.8E-10 86.6 5.9 105 543-661 420-526 (623)
46 KOG1909 Ran GTPase-activating 97.7 2.6E-06 5.7E-11 83.8 -3.2 93 562-660 155-251 (382)
47 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 68.3 6.1 125 543-685 21-152 (233)
48 KOG1859 Leucine-rich repeat pr 97.6 3.9E-07 8.4E-12 97.4 -11.2 87 536-637 204-290 (1096)
49 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.2E-10 87.3 -1.2 237 357-685 72-317 (414)
50 PLN03150 hypothetical protein; 97.6 0.00011 2.4E-09 83.1 6.5 108 566-687 420-529 (623)
51 KOG1947 Leucine rich repeat pr 97.3 3.1E-05 6.7E-10 85.9 -2.5 18 322-339 186-203 (482)
52 PF12799 LRR_4: Leucine Rich r 97.2 0.0003 6.6E-09 48.3 2.9 40 626-667 1-40 (44)
53 KOG1947 Leucine rich repeat pr 97.2 2.2E-05 4.8E-10 87.1 -4.5 40 406-445 403-442 (482)
54 KOG0531 Protein phosphatase 1, 97.1 0.0001 2.2E-09 79.5 0.1 128 537-685 114-244 (414)
55 KOG2982 Uncharacterized conser 97.1 0.00033 7.2E-09 67.7 3.0 36 403-439 70-106 (418)
56 PF12799 LRR_4: Leucine Rich r 97.0 0.0005 1.1E-08 47.2 2.5 35 542-576 2-36 (44)
57 KOG3665 ZYG-1-like serine/thre 97.0 0.00017 3.7E-09 81.4 -0.1 95 537-640 169-263 (699)
58 KOG3665 ZYG-1-like serine/thre 97.0 0.00039 8.4E-09 78.6 2.5 108 562-685 146-262 (699)
59 KOG2982 Uncharacterized conser 96.9 0.00044 9.6E-09 66.9 1.8 87 351-439 65-155 (418)
60 KOG4579 Leucine-rich repeat (L 96.7 0.00013 2.8E-09 62.3 -3.2 114 541-671 27-143 (177)
61 KOG4579 Leucine-rich repeat (L 96.7 6.8E-05 1.5E-09 63.9 -4.9 82 566-660 29-110 (177)
62 KOG1644 U2-associated snRNP A' 96.5 0.006 1.3E-07 56.1 5.8 90 536-635 59-149 (233)
63 KOG2123 Uncharacterized conser 95.8 0.00092 2E-08 64.2 -2.9 100 540-679 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 95.4 0.0064 1.4E-07 58.4 1.2 109 539-660 41-153 (260)
65 KOG2123 Uncharacterized conser 95.3 0.0007 1.5E-08 64.9 -5.6 76 523-604 25-100 (388)
66 COG5238 RNA1 Ran GTPase-activa 94.7 0.017 3.7E-07 55.5 2.0 76 29-109 25-103 (388)
67 KOG3864 Uncharacterized conser 94.0 0.0041 8.8E-08 57.2 -3.7 86 124-217 102-188 (221)
68 KOG2739 Leucine-rich acidic nu 93.5 0.053 1.2E-06 52.2 2.7 109 560-684 39-154 (260)
69 PF13306 LRR_5: Leucine rich r 93.3 0.38 8.2E-06 42.1 7.8 110 537-668 8-119 (129)
70 KOG3864 Uncharacterized conser 92.6 0.026 5.6E-07 52.1 -0.8 85 564-660 101-186 (221)
71 PF13306 LRR_5: Leucine rich r 91.6 0.64 1.4E-05 40.6 7.0 105 529-653 22-129 (129)
72 PF13504 LRR_7: Leucine rich r 91.3 0.15 3.3E-06 26.8 1.6 15 542-556 2-16 (17)
73 PF00560 LRR_1: Leucine Rich R 91.0 0.14 3E-06 29.0 1.3 16 628-644 2-17 (22)
74 COG5238 RNA1 Ran GTPase-activa 81.9 0.27 5.7E-06 47.7 -1.4 16 539-554 28-43 (388)
75 smart00370 LRR Leucine-rich re 73.7 2.6 5.6E-05 24.8 1.7 18 540-557 1-18 (26)
76 smart00369 LRR_TYP Leucine-ric 73.7 2.6 5.6E-05 24.8 1.7 18 540-557 1-18 (26)
77 smart00367 LRR_CC Leucine-rich 73.0 2.3 5.1E-05 25.1 1.4 15 674-688 3-17 (26)
78 KOG3763 mRNA export factor TAP 65.5 2 4.4E-05 46.2 0.0 63 538-604 215-282 (585)
79 PF13516 LRR_6: Leucine Rich r 59.5 6.6 0.00014 22.5 1.5 17 564-580 2-18 (24)
80 smart00365 LRR_SD22 Leucine-ri 57.7 7.2 0.00016 23.2 1.4 17 541-557 2-18 (26)
81 smart00364 LRR_BAC Leucine-ric 54.5 8.2 0.00018 22.9 1.2 17 651-668 3-19 (26)
82 KOG0473 Leucine-rich repeat pr 53.1 0.63 1.4E-05 44.1 -5.5 37 538-574 39-75 (326)
83 smart00368 LRR_RI Leucine rich 30.6 33 0.00071 20.6 1.3 15 564-578 2-16 (28)
84 KOG3763 mRNA export factor TAP 26.1 25 0.00055 38.2 0.4 84 563-656 217-307 (585)
85 KOG0473 Leucine-rich repeat pr 24.4 2.6 5.6E-05 40.2 -6.4 85 560-661 38-122 (326)
86 KOG4308 LRR-containing protein 23.4 2.9 6.2E-05 45.7 -7.4 140 541-688 144-305 (478)
87 PF05725 FNIP: FNIP Repeat; I 23.3 1.3E+02 0.0028 20.4 3.3 31 650-681 12-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.3e-33 Score=331.91 Aligned_cols=297 Identities=15% Similarity=0.114 Sum_probs=175.6
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC-CCCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE-VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
++|++|++++|...+.+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|.....+|..+ ..+++|+.+
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L 385 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKL 385 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEE
Confidence 4555555555554444444555555555555555332223332 1224455555555554333333332 344555555
Q ss_pred EeecCCCccccccc-CCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCC-CCccccc
Q 038031 436 NIQYCCSLRYIVEV-QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKN-ELPATLE 513 (729)
Q Consensus 436 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~ 513 (729)
++++|+....++.. .-.++|+.|++.+|.--..+ |..+. .++ .|+.|+++++. +...++.. ...++|+
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~-----~l~--~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFT-----KLP--LVYFLDISNNN-LQGRINSRKWDMPSLQ 455 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHh-----cCC--CCCEEECcCCc-ccCccChhhccCCCCc
Confidence 55543322222211 11233555555544321122 22111 344 56666666532 22212211 1124566
Q ss_pred cccccccccccccCcccccccCcCCCCCccceEEEccCCCCC-CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCC
Q 038031 514 SLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPS-LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFS 592 (729)
Q Consensus 514 ~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 592 (729)
+| .+.+|.-...+|..+ ..++|+.|++++|++.. ++.....+++|++|++++|.+....+. .+..++
T Consensus 456 ~L-------~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~ 523 (968)
T PLN00113 456 ML-------SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD----ELSSCK 523 (968)
T ss_pred EE-------ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh----HHcCcc
Confidence 66 555555444555443 45789999999998774 344556678899999999988876653 567889
Q ss_pred CcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCC
Q 038031 593 SLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLP 672 (729)
Q Consensus 593 ~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 672 (729)
+|++|++++|.. .+.+|... ..+++|+.|++++|.....+|..+..+++|++|++++|+....+|..+.+
T Consensus 524 ~L~~L~Ls~N~l---~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 524 KLVSLDLSHNQL---SGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred CCCEEECCCCcc---cccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 999999999884 44555544 46789999999997766688888889999999999998888888887666
Q ss_pred CccceeeccCCchhH
Q 038031 673 SSLLQLWISGCPLIE 687 (729)
Q Consensus 673 ~~L~~L~l~~n~~l~ 687 (729)
.++....+.+|+.+.
T Consensus 594 ~~~~~~~~~~n~~lc 608 (968)
T PLN00113 594 LAINASAVAGNIDLC 608 (968)
T ss_pred cccChhhhcCCcccc
Confidence 677777777887654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-31 Score=320.69 Aligned_cols=503 Identities=16% Similarity=0.138 Sum_probs=336.1
Q ss_pred CccEEEEeeeCCCC-CCcccCCCCCCCccEEEEccCCCCCcCCC--CCCCCCCCeEEEcCCCCceEcCccccCCCCCCCC
Q 038031 99 NLDQFCVCGYGGTK-FPTWLGDSSFSNLVTLKFEDCGMCTALPS--VGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPF 175 (729)
Q Consensus 99 ~L~~L~L~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 175 (729)
+++.|+++++.+.. .+..+ ..+++|+.|++++|...+.+|. +..+++|++|++++|.....++. ..+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~--~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAI--FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--------GSI 139 (968)
T ss_pred cEEEEEecCCCccccCChHH--hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--------ccc
Confidence 56666666554332 23233 2456666666666654344552 33666666666666543333332 125
Q ss_pred CCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccccCCC---CCCCccEEEEEccC---CcccccCCCCc
Q 038031 176 PCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLPE---HLPALQMLAIYKCE---KLSISITSLPA 249 (729)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~L~~L~l~~~~---~l~~~~~~l~~ 249 (729)
++|++|++.++.- ....+ ..++.+++|++|++++|. +.+.+|. .+++|+.|++++|. .++..+..+++
T Consensus 140 ~~L~~L~Ls~n~~-~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 140 PNLETLDLSNNML-SGEIP----NDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECcCCcc-cccCC----hHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 6666666665421 11111 114556677777776653 3334443 45666777776665 23335566778
Q ss_pred ccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEE
Q 038031 250 LCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRL 329 (729)
Q Consensus 250 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 329 (729)
|++|++++|......+. ....+++|+.|++.++.....++ ..++.+++|+.|
T Consensus 214 L~~L~L~~n~l~~~~p~------------------------~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L 265 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPY------------------------EIGGLTSLNHLDLVYNNLTGPIP----SSLGNLKNLQYL 265 (968)
T ss_pred ccEEECcCCccCCcCCh------------------------hHhcCCCCCEEECcCceeccccC----hhHhCCCCCCEE
Confidence 88888877754321111 00256777888877765333333 357888999999
Q ss_pred EeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC-CCCcCCcce
Q 038031 330 TIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE-VALPSKLKK 408 (729)
Q Consensus 330 ~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~ 408 (729)
+++++.-...++. .+..+ ++|++|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.
T Consensus 266 ~L~~n~l~~~~p~-----~l~~l----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 266 FLYQNKLSGPIPP-----SIFSL----QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred ECcCCeeeccCch-----hHhhc----cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 9998763333322 23333 8999999999987778888899999999999999654444543 234889999
Q ss_pred EEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc-CCCCCCCeEEEecCCCCcccccccCccccccccccccc
Q 038031 409 IQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV-QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSL 487 (729)
Q Consensus 409 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~ 487 (729)
|++++|.....+|... ..+++|+.|++++|.....++.. ....+++.|++.++.-...+ |..+. .++ +
T Consensus 337 L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--p~~~~-----~~~--~ 405 (968)
T PLN00113 337 LQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI--PKSLG-----ACR--S 405 (968)
T ss_pred EECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC--CHHHh-----CCC--C
Confidence 9999998666677655 78899999999986543333332 22356899998887633333 33222 466 9
Q ss_pred cceEEecCCCCccccccCC-CCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCc
Q 038031 488 LEKLEIWDCPSLTCIFSKN-ELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNL 566 (729)
Q Consensus 488 L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L 566 (729)
|+.|++++|.--.. +|.. .-.++|+.| +++++.-...+|..+..+++|+.|++++|.+....+.....++|
T Consensus 406 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L-------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L 477 (968)
T PLN00113 406 LRRVRLQDNSFSGE-LPSEFTKLPLVYFL-------DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477 (968)
T ss_pred CCEEECcCCEeeeE-CChhHhcCCCCCEE-------ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence 99999998643222 3332 123568888 67766555566666778999999999999776433333344899
Q ss_pred ceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccC
Q 038031 567 QSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSI 646 (729)
Q Consensus 567 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 646 (729)
+.|++++|.+.+..+. .+..+++|+.|++++|.. .+.+|... ..+++|++|++++|.....+|..+
T Consensus 478 ~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l---~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 478 ENLDLSRNQFSGAVPR----KLGSLSELMQLKLSENKL---SGEIPDEL-------SSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred eEEECcCCccCCccCh----hhhhhhccCEEECcCCcc---eeeCChHH-------cCccCCCEEECCCCcccccCChhH
Confidence 9999999998876553 678899999999999984 45667655 378999999999976666788889
Q ss_pred CCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCchhH
Q 038031 647 VDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 647 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~l~ 687 (729)
..+++|++|++++|+....+|.. ..+++|+.+++++|+...
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999998777788874 337899999999998643
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.6e-24 Score=217.43 Aligned_cols=359 Identities=17% Similarity=0.182 Sum_probs=204.4
Q ss_pred cEEEEEccC--Ccc-cccCCCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEecc
Q 038031 230 QMLAIYKCE--KLS-ISITSLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNI 306 (729)
Q Consensus 230 ~~L~l~~~~--~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 306 (729)
+.|++++|. .+. ..|.++|+|+++++..|....++.... ...+++.|.+.+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~-------------------------~sghl~~L~L~~N 135 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGH-------------------------ESGHLEKLDLRHN 135 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccc-------------------------cccceeEEeeecc
Confidence 445555554 111 135567777777777776665554422 2334555555442
Q ss_pred CCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEE
Q 038031 307 KNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREI 386 (729)
Q Consensus 307 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L 386 (729)
.+..+.. ..+..++.|+.|+++.+. +..++...+... +++++|+|++|.+.+.--..|..+.+|..|
T Consensus 136 -~I~sv~s---e~L~~l~alrslDLSrN~-is~i~~~sfp~~--------~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 136 -LISSVTS---EELSALPALRSLDLSRNL-ISEIPKPSFPAK--------VNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred -ccccccH---HHHHhHhhhhhhhhhhch-hhcccCCCCCCC--------CCceEEeeccccccccccccccccchheee
Confidence 2222222 334444555555555322 222222211000 455555555555333223344455555555
Q ss_pred EeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCC
Q 038031 387 EIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCD 464 (729)
Q Consensus 387 ~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 464 (729)
.++. ++++.+|...| +++|+.|++..|. +..+....| .++++|+.|.+.. +.+..+.++
T Consensus 203 kLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltF-qgL~Sl~nlklqr-N~I~kL~DG--------------- 263 (873)
T KOG4194|consen 203 KLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTF-QGLPSLQNLKLQR-NDISKLDDG--------------- 263 (873)
T ss_pred eccc-CcccccCHHHhhhcchhhhhhccccc-eeeehhhhh-cCchhhhhhhhhh-cCcccccCc---------------
Confidence 5554 45555554333 4555555555554 333322222 5555555555544 233333332
Q ss_pred CCcccccccCccccccccccccccceEEecCCCCccccccCCCCc--cccccccccccccccccCcccccc-cCcCCCCC
Q 038031 465 NIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELP--ATLESLEVGNLPPSLKSLSRLEAL-PKGLHNLS 541 (729)
Q Consensus 465 ~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~--~~L~~L~~~~~~~~l~~~~~l~~l-~~~~~~l~ 541 (729)
.|- .+. +++.|+++. ++++. +..+.+. ++|+.| +++. +.+..+ +.++...+
T Consensus 264 ----------~Fy----~l~--kme~l~L~~-N~l~~-vn~g~lfgLt~L~~L-------~lS~-NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 264 ----------AFY----GLE--KMEHLNLET-NRLQA-VNEGWLFGLTSLEQL-------DLSY-NAIQRIHIDSWSFTQ 317 (873)
T ss_pred ----------cee----eec--ccceeeccc-chhhh-hhcccccccchhhhh-------ccch-hhhheeecchhhhcc
Confidence 222 233 444444444 33333 2222211 334555 3333 222222 35567789
Q ss_pred ccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCC
Q 038031 542 CLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGT 620 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~ 620 (729)
+|++|++++|+|..++ ..+..+..|++|.|++|++.... ...|..+.+|++|++.+|.. .+.-+ +-..
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~----e~af~~lssL~~LdLr~N~l----s~~IE---Daa~ 386 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA----EGAFVGLSSLHKLDLRSNEL----SWCIE---DAAV 386 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH----hhHHHHhhhhhhhcCcCCeE----EEEEe---cchh
Confidence 9999999999999988 33444589999999999886543 34778899999999999984 33222 2235
Q ss_pred ccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC-CCccceeeccCCc
Q 038031 621 ALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL-PSSLLQLWISGCP 684 (729)
Q Consensus 621 ~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~n~ 684 (729)
+|..+++|++|++.+ ++++.+| +.|.++++|+.|++.+ |-+.++..+.+ ...|++|.+..-.
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMNSSS 450 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhcccc
Confidence 667899999999999 8999999 8899999999999998 56777877655 4478888776533
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-23 Score=212.33 Aligned_cols=335 Identities=18% Similarity=0.271 Sum_probs=216.2
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+++|+.+.+.+ +.++.+|. +......|+.|++.++- +.++..+ .+..+ +.|++|+|+.|.+ ..+
T Consensus 100 nl~nLq~v~l~~-N~Lt~IP~----f~~~sghl~~L~L~~N~-I~sv~se----~L~~l----~alrslDLSrN~i-s~i 164 (873)
T KOG4194|consen 100 NLPNLQEVNLNK-NELTRIPR----FGHESGHLEKLDLRHNL-ISSVTSE----ELSAL----PALRSLDLSRNLI-SEI 164 (873)
T ss_pred cCCcceeeeecc-chhhhccc----ccccccceeEEeeeccc-cccccHH----HHHhH----hhhhhhhhhhchh-hcc
Confidence 456666666554 34455554 22233346777776533 4443322 34444 6777777777653 333
Q ss_pred c-ccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC
Q 038031 374 P-QSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ 450 (729)
Q Consensus 374 ~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 450 (729)
+ ..+..-.++++|++++ +.++.+....| +.+|..|.++.|. ++.+|...| +.+++|+.|++.. +.++.+
T Consensus 165 ~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnr-N~iriv---- 236 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNR-NRIRIV---- 236 (873)
T ss_pred cCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCc-ccccCHHHh-hhcchhhhhhccc-cceeee----
Confidence 3 3444555677777776 56666655444 5567777777766 666666655 6677777777755 333321
Q ss_pred CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCC--ccccccccccccccccccCc
Q 038031 451 LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNEL--PATLESLEVGNLPPSLKSLS 528 (729)
Q Consensus 451 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~--~~~L~~L~~~~~~~~l~~~~ 528 (729)
+-+.+. .++ +|+.|.+.. +.+.. +..+.| ...+++| ++.. +
T Consensus 237 -----e~ltFq--------------------gL~--Sl~nlklqr-N~I~k-L~DG~Fy~l~kme~l-------~L~~-N 279 (873)
T KOG4194|consen 237 -----EGLTFQ--------------------GLP--SLQNLKLQR-NDISK-LDDGAFYGLEKMEHL-------NLET-N 279 (873)
T ss_pred -----hhhhhc--------------------Cch--hhhhhhhhh-cCccc-ccCcceeeeccccee-------eccc-c
Confidence 111122 233 455555544 22222 222322 1345666 3333 3
Q ss_pred ccccccC-cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 529 RLEALPK-GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 529 ~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
++..+.. ++.+++.|+.|++++|.|..+. ..+..+++|++|+|++|.+....+ ..|..+..|++|++++|.
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~----~sf~~L~~Le~LnLs~Ns--- 352 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE----GSFRVLSQLEELNLSHNS--- 352 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh----hHHHHHHHhhhhcccccc---
Confidence 4444443 4689999999999999999887 778888999999999999887654 478889999999999998
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCcccc-c---ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeec
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERL-S---SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWI 680 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~---~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l 680 (729)
+..+.... |..+.+|++|++++ +.+... . ..+..+++|+.|.+.+ |+++.+|...+ +.+|+.|++
T Consensus 353 -i~~l~e~a------f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 353 -IDHLAEGA------FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred -hHHHHhhH------HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecC
Confidence 77776543 35789999999999 566543 2 4567899999999999 78999998755 789999999
Q ss_pred cCCchhHHhhhccCCCCcccccccceEEeC
Q 038031 681 SGCPLIEEKCRKDGGQYWDLLTHIPCVKID 710 (729)
Q Consensus 681 ~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~ 710 (729)
.+|+..+ .....|.++ +++.+.+.
T Consensus 424 ~~NaiaS-----Iq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 424 GDNAIAS-----IQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCCccee-----ecccccccc-hhhhhhhc
Confidence 9998644 222355555 66554443
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=8.7e-21 Score=227.73 Aligned_cols=269 Identities=23% Similarity=0.329 Sum_probs=169.9
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCC-CCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEV-ALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
++|+.|+++++..++.+|. +..+++|++|++++|..+..+|.. ..+++|+.|++++|..++.+|.. ..+++|+.|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEE
Confidence 4555555555554444442 444555555555555555555432 22455555555555555555543 245555555
Q ss_pred EeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCcc------cccc-CCCC
Q 038031 436 NIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLT------CIFS-KNEL 508 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~------~~~~-~~~~ 508 (729)
++++|..+..++. .+.+|+.|++.++. ++.+ |... .++ +|+.|.+.++.... ...+ ....
T Consensus 710 ~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~l--P~~~------~l~--~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 710 NLSGCSRLKSFPD--ISTNISWLDLDETA-IEEF--PSNL------RLE--NLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred eCCCCCCcccccc--ccCCcCeeecCCCc-cccc--cccc------ccc--ccccccccccchhhccccccccchhhhhc
Confidence 5555554444432 23345555554433 3333 2211 123 55555554432110 0000 0123
Q ss_pred ccccccccccccccccccCcccccccCcCCCCCccceEEEccC-CCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCC
Q 038031 509 PATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGG-ALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRG 587 (729)
Q Consensus 509 ~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~-~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 587 (729)
+++|+.| .+.+|+.+..+|..+.++++|+.|++++| .+..++... .+++|+.|++++|......+
T Consensus 777 ~~sL~~L-------~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p------ 842 (1153)
T PLN03210 777 SPSLTRL-------FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP------ 842 (1153)
T ss_pred cccchhe-------eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc------
Confidence 4678888 88888888888888899999999999988 244555333 56899999999987765543
Q ss_pred CCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCC
Q 038031 588 FHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 588 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
...++|+.|++++|. +..+|..++ .+++|+.|++++|++++.+|..+..+++|+.+++++|..++.++
T Consensus 843 -~~~~nL~~L~Ls~n~----i~~iP~si~-------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 -DISTNISDLNLSRTG----IEEVPWWIE-------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -ccccccCEeECCCCC----CccChHHHh-------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 224689999999988 888887763 78999999999999999999888889999999999999888765
Q ss_pred C
Q 038031 668 E 668 (729)
Q Consensus 668 ~ 668 (729)
.
T Consensus 911 l 911 (1153)
T PLN03210 911 W 911 (1153)
T ss_pred C
Confidence 4
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.2e-20 Score=224.21 Aligned_cols=312 Identities=21% Similarity=0.308 Sum_probs=235.0
Q ss_pred CCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCc
Q 038031 324 CSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALP 403 (729)
Q Consensus 324 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 403 (729)
++|+.|.+.+++ ++.++... .+.+|++|++.++. +..++..+..+++|+.|++++|..++.+|....+
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f----------~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNF----------RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcC----------CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 357777777654 45544321 13688888888876 5667777788899999999888888888877778
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccc
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRY 483 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l 483 (729)
++|++|++++|..+..+|..+ ..+++|+.|++++|+.++.++.....++|+.|++.+|..++.+ |.. .
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~--p~~--------~ 724 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF--PDI--------S 724 (1153)
T ss_pred CcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc--ccc--------c
Confidence 899999999988888888765 7888999999999888888877655567899999888877766 431 2
Q ss_pred cccccceEEecCCCCccccccCCCCccccccccccccccccccCcc------ccccc-CcCCCCCccceEEEccCC-CCC
Q 038031 484 TSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSR------LEALP-KGLHNLSCLQELTIIGGA-LPS 555 (729)
Q Consensus 484 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~------l~~l~-~~~~~l~~L~~L~l~~~~-i~~ 555 (729)
+ +|+.|+++++ .+.. +|...-.++|++| .+.++.. +..++ ......++|+.|++++|. +..
T Consensus 725 ~--nL~~L~L~~n-~i~~-lP~~~~l~~L~~L-------~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 725 T--NISWLDLDET-AIEE-FPSNLRLENLDEL-------ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred C--CcCeeecCCC-cccc-ccccccccccccc-------cccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 2 7888888874 3555 5554334567777 4443321 11111 112345789999999984 335
Q ss_pred CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEccc
Q 038031 556 LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISR 635 (729)
Q Consensus 556 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 635 (729)
++...+.+++|+.|++++|......+. . ..+++|+.|++++|.. +..+|. .+++|+.|++++
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~----~-~~L~sL~~L~Ls~c~~---L~~~p~----------~~~nL~~L~Ls~ 855 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPT----G-INLESLESLDLSGCSR---LRTFPD----------ISTNISDLNLSR 855 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCC----C-CCccccCEEECCCCCc---cccccc----------cccccCEeECCC
Confidence 676677789999999999987776652 2 2689999999999875 666664 347899999999
Q ss_pred CCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCchhHHh
Q 038031 636 FPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPLIEEK 689 (729)
Q Consensus 636 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~l~~~ 689 (729)
+.++.+|.++..+++|++|++++|+.++.+|.. ..+++|+.+++++|+.+++.
T Consensus 856 -n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 856 -TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 789999999999999999999999999999875 34789999999999988754
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.3e-24 Score=227.45 Aligned_cols=264 Identities=22% Similarity=0.225 Sum_probs=156.1
Q ss_pred CCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC-
Q 038031 324 CSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL- 402 (729)
Q Consensus 324 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~- 402 (729)
++|+.|....|+-.+ +.. ...+.+|++++++.+. +..+|.|+..+.+|+.+...+ +++..+|.-.+
T Consensus 219 ~~l~~L~a~~n~l~~-~~~----------~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~ 285 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT-LDV----------HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISR 285 (1081)
T ss_pred cchheeeeccCccee-ecc----------ccccccceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhh
Confidence 567777777766432 211 2245799999999987 677889999999999999998 67788876544
Q ss_pred cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCC---CCCCeEEEecCCCCcccccccCccccc
Q 038031 403 PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLP---PSLKQLTIWRCDNIRTLTVEEGIQSSS 479 (729)
Q Consensus 403 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~~ 479 (729)
.++|+.|.+..|. +..+|... .++.+|++|++.. +++..++...+. .+++.|..+.. .+... +.. .
T Consensus 286 ~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~l--p~~----~ 354 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTL--PSY----E 354 (1081)
T ss_pred hhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhc-ccccc--ccc----c
Confidence 7899999999998 88888775 6789999999987 567666653211 11222222111 11111 100 0
Q ss_pred cccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-C
Q 038031 480 SRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-E 558 (729)
Q Consensus 480 ~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~ 558 (729)
...++ .|+.|.+.+ +.++ ......+.+++.||.|++++|++..++ .
T Consensus 355 e~~~~--~Lq~Lylan-N~Lt------------------------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 355 ENNHA--ALQELYLAN-NHLT------------------------------DSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred chhhH--HHHHHHHhc-Cccc------------------------------ccchhhhccccceeeeeecccccccCCHH
Confidence 00111 233333222 1111 111223466777777777777777666 4
Q ss_pred CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCC
Q 038031 559 EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPN 638 (729)
Q Consensus 559 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 638 (729)
....++.|++|+|+||++....- .+..++.|++|...+|+ +..+|... .++.|+.+|++. ++
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~-----tva~~~~L~tL~ahsN~----l~~fPe~~--------~l~qL~~lDlS~-N~ 463 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPD-----TVANLGRLHTLRAHSNQ----LLSFPELA--------QLPQLKVLDLSC-NN 463 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhH-----HHHhhhhhHHHhhcCCc----eeechhhh--------hcCcceEEeccc-ch
Confidence 45555666666666666654421 44566666666666666 66666322 456666666665 55
Q ss_pred cccccc-cCCCCCCccEEeecCCCC
Q 038031 639 LERLSS-SIVDLQNLTELHLWDCPK 662 (729)
Q Consensus 639 l~~l~~-~~~~l~~L~~L~l~~c~~ 662 (729)
++.+-- .-.--++|++|++++|..
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcc
Confidence 554421 111115666666666543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.1e-23 Score=213.82 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=130.1
Q ss_pred CcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 527 LSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 527 ~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
|+.+..+|..+.++++|+.|++|+|+|+++....+...+|++|+++.|.++... ..+.+++.|+.|.+.+|...
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~kLy~n~NkL~- 304 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLTKLYANNNKLT- 304 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHHHHHhccCccc-
Confidence 367777889999999999999999999999977788899999999999887653 37799999999999999988
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCch
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPL 685 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~ 685 (729)
++.+|.++| .+..|+.+...+ ++++-+|.++..|+.|+.|.++. |.+..+|.. .+++-|+.|+++.||+
T Consensus 305 -FeGiPSGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 305 -FEGIPSGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -ccCCccchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 999999996 889999999999 89999999999999999999987 678888885 4589999999999998
Q ss_pred hHH
Q 038031 686 IEE 688 (729)
Q Consensus 686 l~~ 688 (729)
+.-
T Consensus 375 LVM 377 (1255)
T KOG0444|consen 375 LVM 377 (1255)
T ss_pred ccC
Confidence 763
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1e-24 Score=212.85 Aligned_cols=140 Identities=23% Similarity=0.246 Sum_probs=95.5
Q ss_pred cccccccCcCCCCCccc-eEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 528 SRLEALPKGLHNLSCLQ-ELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~-~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
+.+.++|..+..++.+. .+.+++|.+..++.+...+++|..|++++|..-.. |. .+..+..|+.|+++.|.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~----e~~~lv~Lq~LnlS~Nr--- 469 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PE----EMGSLVRLQTLNLSFNR--- 469 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-ch----hhhhhhhhheecccccc---
Confidence 45556666666666554 35566666666666666667888888887755443 32 45666778888888886
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCc
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCP 684 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~ 684 (729)
+..+|.-. ..+..++.+-.++ ++++.++ .++.++++|++|++.+ |.+..+|.. |.+.+|++|.+.|||
T Consensus 470 -Fr~lP~~~-------y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 470 -FRMLPECL-------YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -cccchHHH-------hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 77777655 2445555555555 7788877 4588888888888877 577777764 668888888888887
Q ss_pred h
Q 038031 685 L 685 (729)
Q Consensus 685 ~ 685 (729)
.
T Consensus 540 f 540 (565)
T KOG0472|consen 540 F 540 (565)
T ss_pred c
Confidence 5
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=2.9e-22 Score=215.28 Aligned_cols=264 Identities=22% Similarity=0.198 Sum_probs=167.6
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC-cCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL-PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
++++.|+.++|...+..+ ...-.+|+++++++ +++..+|.... +.+|+.+++..|. +..+|... ....+|+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri--~~~~~L~~l 292 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHNR-LVALPLRI--SRITSLVSL 292 (1081)
T ss_pred cchheeeeccCcceeecc--ccccccceeeecch-hhhhcchHHHHhcccceEecccchh-HHhhHHHH--hhhhhHHHH
Confidence 566666666666443222 11234566666666 45555653222 5666666666665 45555443 345556666
Q ss_pred EeecCCCcccccccCC-CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccc
Q 038031 436 NIQYCCSLRYIVEVQL-PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLES 514 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 514 (729)
.+..| .+..++.... .++|++|++... ++..+ |+.+++. . ..+++.
T Consensus 293 ~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~l--p~~~l~v----~-------------------------~~~l~~ 339 (1081)
T KOG0618|consen 293 SAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSL--PDNFLAV----L-------------------------NASLNT 339 (1081)
T ss_pred Hhhhh-hhhhCCCcccccceeeeeeehhc-ccccc--chHHHhh----h-------------------------hHHHHH
Confidence 65552 3444443322 244555555443 23333 3322210 0 011222
Q ss_pred ccccccccccccCcccccccCc-CCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCC
Q 038031 515 LEVGNLPPSLKSLSRLEALPKG-LHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFS 592 (729)
Q Consensus 515 L~~~~~~~~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 592 (729)
+ ..+ +.++..+|.. =..++.|+.|.+.+|.+.+-- +.+....+|+.|+|++|.+.... +..+.++.
T Consensus 340 l-------n~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp----as~~~kle 407 (1081)
T KOG0618|consen 340 L-------NVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP----ASKLRKLE 407 (1081)
T ss_pred H-------hhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC----HHHHhchH
Confidence 2 111 1233333321 245788999999999877433 55556699999999999877543 45789999
Q ss_pred CcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CC
Q 038031 593 SLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GL 671 (729)
Q Consensus 593 ~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~ 671 (729)
.|++|++|+|. +..+|... ..+..|++|...+ +.+..+| .+..++.|+.+|++. |.++.+... ..
T Consensus 408 ~LeeL~LSGNk----L~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 408 ELEELNLSGNK----LTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEAL 473 (1081)
T ss_pred HhHHHhcccch----hhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhC
Confidence 99999999999 89999776 3789999999988 8899998 789999999999988 677776543 34
Q ss_pred C-CccceeeccCCch
Q 038031 672 P-SSLLQLWISGCPL 685 (729)
Q Consensus 672 ~-~~L~~L~l~~n~~ 685 (729)
+ ++|++||++||+.
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 5 8999999999986
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=2.5e-22 Score=196.31 Aligned_cols=452 Identities=21% Similarity=0.227 Sum_probs=258.5
Q ss_pred ccCCCCCCccEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCC-CCCCCCCCCeEEEcCCCCceEcCccccCCC
Q 038031 92 DMLKPHKNLDQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDD 170 (729)
Q Consensus 92 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 170 (729)
+.+..+..|.+|.++.+....+|..++ .+..++.+++++++ +..+| .++.++.|++|+.+++. +...+.++..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~-- 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGR-- 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHH--
Confidence 345555666666666666666666553 35666666666654 33444 46666666666666552 3333333211
Q ss_pred CCCCCCCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccccCCC---CCCCccEEEEEccC--CcccccC
Q 038031 171 SPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLPE---HLPALQMLAIYKCE--KLSISIT 245 (729)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~L~~L~l~~~~--~l~~~~~ 245 (729)
+..++.|+..+.. +.. .+.+...+.+|..+.+.++. ++ .+|. .++.|++|+...|. .++..++
T Consensus 136 ----~~~l~dl~~~~N~-i~s-----lp~~~~~~~~l~~l~~~~n~-l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 136 ----LLDLEDLDATNNQ-ISS-----LPEDMVNLSKLSKLDLEGNK-LK-ALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred ----Hhhhhhhhccccc-ccc-----CchHHHHHHHHHHhhccccc-hh-hCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 3344444443321 110 11113344445555554442 33 3332 24444544433332 2333444
Q ss_pred CCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCC
Q 038031 246 SLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICS 325 (729)
Q Consensus 246 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 325 (729)
.+.+|+.|++..+.....+.+. .+..|+++++.. +.+..++. .....+++
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~--------------------------gcs~L~Elh~g~-N~i~~lpa---e~~~~L~~ 253 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFP--------------------------GCSLLKELHVGE-NQIEMLPA---EHLKHLNS 253 (565)
T ss_pred chhhhHHHHhhhcccccCCCCC--------------------------ccHHHHHHHhcc-cHHHhhHH---HHhccccc
Confidence 4556666666666555544332 344555555544 23333444 55678889
Q ss_pred ccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC----CC
Q 038031 326 LKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE----VA 401 (729)
Q Consensus 326 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~ 401 (729)
+..|++++.. +++++.+ +-.+ .+|++|++++|. ++.+|..++++ +|++|-+.+++ +..+.. .+
T Consensus 254 l~vLDLRdNk-lke~Pde-----~clL----rsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g 320 (565)
T KOG0472|consen 254 LLVLDLRDNK-LKEVPDE-----ICLL----RSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG 320 (565)
T ss_pred ceeeeccccc-cccCchH-----HHHh----hhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence 9999998754 7777665 2222 789999999887 67788889999 99999998853 433211 00
Q ss_pred CcCCcceEEE-------ecCC--CC-------CccccccccCCCCCccEEEeecCCCcccccccCCC----CCCCeEEEe
Q 038031 402 LPSKLKKIQI-------RHCD--AL-------KSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLP----PSLKQLTIW 461 (729)
Q Consensus 402 ~~~~L~~L~l-------~~~~--~l-------~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~----~~L~~L~l~ 461 (729)
-..-|++|.= +... .. ...|.. ....+.+.|++++ .+++.+|...+. .-++..+++
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~---~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI---YAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch---hhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecc
Confidence 0011111110 0000 00 001111 3456778888877 566666643222 124445555
Q ss_pred cCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCC
Q 038031 462 RCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLS 541 (729)
Q Consensus 462 ~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~ 541 (729)
+.. +..+ |.... .++.+. +. -....+.+..+|..+..++
T Consensus 397 kNq-L~el--Pk~L~----------~lkelv--------------------T~--------l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 397 KNQ-LCEL--PKRLV----------ELKELV--------------------TD--------LVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred cch-Hhhh--hhhhH----------HHHHHH--------------------HH--------HHhhcCccccchHHHHhhh
Confidence 532 3333 33222 111100 00 1122244455566678899
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc-ccccCC
Q 038031 542 CLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE-DKRLGT 620 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~-~~~~~~ 620 (729)
+|..|++++|.+.++|...+....|+.|+++.|++....- .+-.+..++.+-.++|. ++.++.. .
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~-----~~y~lq~lEtllas~nq----i~~vd~~~l----- 501 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPE-----CLYELQTLETLLASNNQ----IGSVDPSGL----- 501 (565)
T ss_pred cceeeecccchhhhcchhhhhhhhhheecccccccccchH-----HHhhHHHHHHHHhcccc----ccccChHHh-----
Confidence 9999999999888999777777889999999997765432 22233445555556566 8888775 3
Q ss_pred ccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCC
Q 038031 621 ALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPE 668 (729)
Q Consensus 621 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 668 (729)
..+.+|.+|++.+ +.+..+|+.+++|++|++|++++|| ++ .|.
T Consensus 502 --~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 502 --KNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred --hhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 4789999999999 8999999999999999999999965 44 555
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.2e-20 Score=193.90 Aligned_cols=223 Identities=22% Similarity=0.285 Sum_probs=117.6
Q ss_pred cccEEEeeecCCcccccccccCCCCccEEEeccCCCcccC--CCCCCcCCcceEEEecCCC-CCccccccccCCCCCccE
Q 038031 358 RLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSF--PEVALPSKLKKIQIRHCDA-LKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 358 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~ 434 (729)
-|-.|+|++|. +..+|..+..+.+|++|.+++++ +..+ .....+++|++|.+++.+. +..+|... ..+.+|..
T Consensus 151 DLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~d 226 (1255)
T KOG0444|consen 151 DLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRD 226 (1255)
T ss_pred hHhhhccccch-hhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhh
Confidence 34455555554 55566666666677777776643 2221 1122245566666665432 34455544 56666666
Q ss_pred EEeecCCCcccccccCC-CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccc
Q 038031 435 LNIQYCCSLRYIVEVQL-PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLE 513 (729)
Q Consensus 435 L~l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 513 (729)
++++. +++..+|..-. .++|+.|++++.. ++.+.+..+.+. ++++|+++.
T Consensus 227 vDlS~-N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~---------~lEtLNlSr------------------ 277 (1255)
T KOG0444|consen 227 VDLSE-NNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWE---------NLETLNLSR------------------ 277 (1255)
T ss_pred ccccc-cCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHh---------hhhhhcccc------------------
Confidence 66654 44444433211 1234444444421 333322222222 333333332
Q ss_pred cccccccccccccCcccccccCcCCCCCccceEEEccCCCC--CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCC
Q 038031 514 SLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALP--SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRF 591 (729)
Q Consensus 514 ~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 591 (729)
+.++.+|..+..+++|+.|.+.+|++. .||+.+|.+.+|+++...+|.+.-. ..++..|
T Consensus 278 --------------NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-----PEglcRC 338 (1255)
T KOG0444|consen 278 --------------NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-----PEGLCRC 338 (1255)
T ss_pred --------------chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-----chhhhhh
Confidence 455556666666777777777666543 5556666666666666666654433 2255666
Q ss_pred CCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc
Q 038031 592 SSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS 643 (729)
Q Consensus 592 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 643 (729)
+.|+.|.++.|. +.++|.++ ..++.|+.|++.+++++.-=|
T Consensus 339 ~kL~kL~L~~Nr----LiTLPeaI-------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 339 VKLQKLKLDHNR----LITLPEAI-------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHHhcccccc----eeechhhh-------hhcCCcceeeccCCcCccCCC
Confidence 666666666666 66666655 356666666666666655433
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3.6e-15 Score=166.41 Aligned_cols=255 Identities=28% Similarity=0.349 Sum_probs=134.5
Q ss_pred cccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEe
Q 038031 358 RLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNI 437 (729)
Q Consensus 358 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 437 (729)
.-..|+++.+. ++.+|..+. ++|+.|++.+ +.++.+|. .+++|++|++++|. ++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC-CCcCCcchh--cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceeec
Confidence 44455665553 345554442 3566666665 45555553 24566666666654 5555432 245666666
Q ss_pred ecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccc
Q 038031 438 QYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEV 517 (729)
Q Consensus 438 ~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~ 517 (729)
++| .+..++. .+.+|+.|++.++ .++.+ |. ..+ +|+.|+++++ .++. +|. ++.+|+.|
T Consensus 270 s~N-~L~~Lp~--lp~~L~~L~Ls~N-~Lt~L--P~--------~p~--~L~~LdLS~N-~L~~-Lp~--lp~~L~~L-- 327 (788)
T PRK15387 270 FSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PV--------LPP--GLQELSVSDN-QLAS-LPA--LPSELCKL-- 327 (788)
T ss_pred cCC-chhhhhh--chhhcCEEECcCC-ccccc--cc--------ccc--ccceeECCCC-cccc-CCC--Cccccccc--
Confidence 553 3433332 3345666666554 24444 22 122 5666666653 4444 332 33445555
Q ss_pred cccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCccee
Q 038031 518 GNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHL 597 (729)
Q Consensus 518 ~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L 597 (729)
.+.+ +++..+|.. .++|+.|++++|++..++. .+.+|+.|++++|.+.. ++ ....+|+.|
T Consensus 328 -----~Ls~-N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~---lp~~L~~L~Ls~N~L~~-LP-------~l~~~L~~L 387 (788)
T PRK15387 328 -----WAYN-NQLTSLPTL---PSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTS-LP-------ALPSGLKEL 387 (788)
T ss_pred -----cccc-Ccccccccc---ccccceEecCCCccCCCCC---CCcccceehhhcccccc-Cc-------ccccccceE
Confidence 4444 234444421 1356677777776666653 23566666666665553 22 112456667
Q ss_pred eeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccc
Q 038031 598 TIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLL 676 (729)
Q Consensus 598 ~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~ 676 (729)
++++|. +..+|. .+++|+.|++++ +.++.+|.. ..+|+.|++++ |.++.+|.. +.+++|+
T Consensus 388 dLs~N~----Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 388 IVSGNR----LTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred EecCCc----ccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 777666 555553 235666677776 456666532 24566666666 456666653 2256666
Q ss_pred eeeccCCch
Q 038031 677 QLWISGCPL 685 (729)
Q Consensus 677 ~L~l~~n~~ 685 (729)
.|++++|+.
T Consensus 449 ~LdLs~N~L 457 (788)
T PRK15387 449 TVNLEGNPL 457 (788)
T ss_pred eEECCCCCC
Confidence 777776654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.9e-15 Score=166.19 Aligned_cols=236 Identities=31% Similarity=0.397 Sum_probs=145.8
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
++|+.|++.+|. ++.+|.. +++|++|++++ +.++.+|. .+++|+.|++++|. +..+|.. ..+|+.|+
T Consensus 222 ~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~--lp~sL~~L~Ls~N~-L~~Lp~l-----p~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNN-LTSLPAL---PPELRTLEVSG-NQLTSLPV--LPPGLLELSIFSNP-LTHLPAL-----PSGLCKLW 288 (788)
T ss_pred cCCCEEEccCCc-CCCCCCC---CCCCcEEEecC-CccCcccC--cccccceeeccCCc-hhhhhhc-----hhhcCEEE
Confidence 455666666544 3444431 35566666665 35555552 24566666666554 4444432 24455666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
+++| .++.++. .+++|+.|+++++ .++.+ +. . .+ .|+.|.+++ +.++. +|. ++.+|++|
T Consensus 289 Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~L--p~-l-------p~--~L~~L~Ls~-N~L~~-LP~--lp~~Lq~L- 347 (788)
T PRK15387 289 IFGN-QLTSLPV--LPPGLQELSVSDN-QLASL--PA-L-------PS--ELCKLWAYN-NQLTS-LPT--LPSGLQEL- 347 (788)
T ss_pred CcCC-ccccccc--cccccceeECCCC-ccccC--CC-C-------cc--ccccccccc-Ccccc-ccc--cccccceE-
Confidence 6553 4444432 2345666666554 24443 22 1 11 455555555 33444 432 34556666
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcce
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRH 596 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~ 596 (729)
++++ +++..+|.. .++|+.|++++|++..++.. +.+|+.|++++|.+... + ...++|+.
T Consensus 348 ------dLS~-N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~L-P-------~l~s~L~~ 406 (788)
T PRK15387 348 ------SVSD-NQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL-P-------VLPSELKE 406 (788)
T ss_pred ------ecCC-CccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCC-C-------CcccCCCE
Confidence 5554 456666643 35788889999988877742 36799999999987642 2 12367999
Q ss_pred eeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCC
Q 038031 597 LTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPK 662 (729)
Q Consensus 597 L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 662 (729)
|++++|. +..+|. .+.+|+.|++++ ++++.+|..+..+++|+.|++++|+.
T Consensus 407 LdLS~N~----LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 407 LMVSGNR----LTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEccCCc----CCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 9999998 777875 246789999999 78999998889999999999999754
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.3e-13 Score=155.30 Aligned_cols=245 Identities=25% Similarity=0.352 Sum_probs=127.3
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
.+...|+++++. ++.+|..+ .+.|+.|++++ +.++.+|... ..+|++|++++|. ++.+|... ..+|+.|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~-N~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI--PEQITTLILDN-NELKSLPENL-QGNIKTLYANSNQ-LTSIPATL----PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc--ccCCcEEEecC-CCCCcCChhh-ccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence 445566666553 44455433 24566666665 4566665422 3466666666665 55555432 13566666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
+++| .+..++. .++++|+.|+++++ +++.+ |..+.. +|+.|++++| +++. +|. .++++|+.|
T Consensus 248 Ls~N-~L~~LP~-~l~s~L~~L~Ls~N-~L~~L--P~~l~~---------sL~~L~Ls~N-~Lt~-LP~-~lp~sL~~L- 309 (754)
T PRK15370 248 LSIN-RITELPE-RLPSALQSLDLFHN-KISCL--PENLPE---------ELRYLSVYDN-SIRT-LPA-HLPSGITHL- 309 (754)
T ss_pred CcCC-ccCcCCh-hHhCCCCEEECcCC-ccCcc--ccccCC---------CCcEEECCCC-cccc-Ccc-cchhhHHHH-
Confidence 6664 3444432 23345666666543 35544 443322 5666666663 4443 332 223445555
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcce
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRH 596 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~ 596 (729)
.+.+ +.+..+|..+ .++|+.|++++|.+..++.. .+++|+.|++++|++... +. .+ .++|+.
T Consensus 310 ------~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N~L~~L-P~----~l--p~~L~~ 371 (754)
T PRK15370 310 ------NVQS-NSLTALPETL--PPGLKTLEAGENALTSLPAS--LPPELQVLDVSKNQITVL-PE----TL--PPTITT 371 (754)
T ss_pred ------HhcC-CccccCCccc--cccceeccccCCccccCChh--hcCcccEEECCCCCCCcC-Ch----hh--cCCcCE
Confidence 4433 2344444332 24666666776666665532 235666666666655432 11 11 245666
Q ss_pred eeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCC----CCCCccEEeecCCC
Q 038031 597 LTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIV----DLQNLTELHLWDCP 661 (729)
Q Consensus 597 L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~----~l~~L~~L~l~~c~ 661 (729)
|++++|. +..+|... .++|+.|++++ +++..+|..+. .++++..+++.+|+
T Consensus 372 LdLs~N~----Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 372 LDVSRNA----LTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EECCCCc----CCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6666666 55555533 24566666666 45556553332 23556666666643
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.1e-13 Score=153.43 Aligned_cols=247 Identities=23% Similarity=0.388 Sum_probs=188.2
Q ss_pred CCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEE
Q 038031 381 CSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTI 460 (729)
Q Consensus 381 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 460 (729)
.+...|++++ ..++.+|.. .++.|+.|++++|. ++.+|... ..+|++|++++| .++.++. .++.+|+.|++
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSN-QLTSIPA-TLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCC-ccccCCh-hhhccccEEEC
Confidence 4568899998 578888853 46789999999986 88888764 268999999985 5776654 45667999999
Q ss_pred ecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCC
Q 038031 461 WRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNL 540 (729)
Q Consensus 461 ~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l 540 (729)
++|. ++.+ |..... +|+.|++++ ++++. +|. .++++|+.| .++++ +++.+|..+.
T Consensus 249 s~N~-L~~L--P~~l~s---------~L~~L~Ls~-N~L~~-LP~-~l~~sL~~L-------~Ls~N-~Lt~LP~~lp-- 303 (754)
T PRK15370 249 SINR-ITEL--PERLPS---------ALQSLDLFH-NKISC-LPE-NLPEELRYL-------SVYDN-SIRTLPAHLP-- 303 (754)
T ss_pred cCCc-cCcC--ChhHhC---------CCCEEECcC-CccCc-ccc-ccCCCCcEE-------ECCCC-ccccCcccch--
Confidence 9875 6666 654443 899999985 57776 664 345689999 77664 6777776542
Q ss_pred CccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCC
Q 038031 541 SCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGT 620 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~ 620 (729)
++|+.|++++|.+..++.. .+++|+.|++++|.+... +. .+ .++|+.|++++|. +..+|...
T Consensus 304 ~sL~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N~Lt~L-P~----~l--~~sL~~L~Ls~N~----L~~LP~~l----- 365 (754)
T PRK15370 304 SGITHLNVQSNSLTALPET--LPPGLKTLEAGENALTSL-PA----SL--PPELQVLDVSKNQ----ITVLPETL----- 365 (754)
T ss_pred hhHHHHHhcCCccccCCcc--ccccceeccccCCccccC-Ch----hh--cCcccEEECCCCC----CCcCChhh-----
Confidence 5799999999988887742 347999999999987753 21 22 3799999999998 77788644
Q ss_pred ccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-----CCCCccceeeccCCchhH
Q 038031 621 ALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-----GLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 621 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~n~~l~ 687 (729)
+++|+.|+|++ +.++.+|..+. .+|+.|++++ +.++.+|.. +..+++..+++.+||.-.
T Consensus 366 ----p~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 366 ----PPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred ----cCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 47999999999 57888886554 4799999999 578888763 114678999999999633
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-13 Score=136.05 Aligned_cols=285 Identities=18% Similarity=0.207 Sum_probs=154.8
Q ss_pred ccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCc
Q 038031 355 LSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSL 432 (729)
Q Consensus 355 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 432 (729)
+|+.-.++.|..|.+-...+..|..+++|+.|+|++ +.|+.|.+..| +++|.+|.+.++..++++|...| .++.+|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~sl 142 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSL 142 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHH
Confidence 456777777777764333335677788888888887 57777766555 67777777777666888887776 777777
Q ss_pred cEEEeecCCCcccccccCC--CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcc
Q 038031 433 EILNIQYCCSLRYIVEVQL--PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPA 510 (729)
Q Consensus 433 ~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~ 510 (729)
+-|.+.-| .+.-+....+ .+++..|.+.+. .++.+ +.+.+. .+. .++.+++...+.+.. =
T Consensus 143 qrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i--~~~tf~----~l~--~i~tlhlA~np~icd--------C 204 (498)
T KOG4237|consen 143 QRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSI--CKGTFQ----GLA--AIKTLHLAQNPFICD--------C 204 (498)
T ss_pred HHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhh--cccccc----chh--ccchHhhhcCccccc--------c
Confidence 77766542 2222222111 123444444443 24444 444443 344 555555554332211 0
Q ss_pred ccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCC--CCcceEEecCchhhhhhhhhccCCC
Q 038031 511 TLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLP--TNLQSLDIRGNMEICKSLIERGRGF 588 (729)
Q Consensus 511 ~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~l 588 (729)
+|+++ . ..+...|..++.+....-..+.+.++..+......+ ..+.+=-.+.+......| ...|
T Consensus 205 nL~wl---------a--~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP---~~cf 270 (498)
T KOG4237|consen 205 NLPWL---------A--DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP---AKCF 270 (498)
T ss_pred ccchh---------h--hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh---HHHH
Confidence 01111 0 000111222233333333344444444444211111 111111122222222222 3456
Q ss_pred CCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCC
Q 038031 589 HRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 589 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
.++++|++|++++|. +..+...+ |..+.+++.|++.. +++..+. ..|.++..|++|++.+ |+++.+.
T Consensus 271 ~~L~~L~~lnlsnN~----i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~ 338 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNK----ITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVA 338 (498)
T ss_pred hhcccceEeccCCCc----cchhhhhh------hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEe
Confidence 777888888888877 66665533 24667788888877 6777776 5667778888888888 5677776
Q ss_pred CCCC--CCccceeeccCCch
Q 038031 668 EKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 668 ~~~~--~~~L~~L~l~~n~~ 685 (729)
...+ +.+|.+|++-.||.
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccccceeeeeehccCcc
Confidence 5444 56777788777775
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=3.5e-13 Score=117.37 Aligned_cols=142 Identities=26% Similarity=0.310 Sum_probs=112.4
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+.++.+|..++.+++|+.|+++-|++..++..++.+|.|+.||++.|+...... ...|..+..|+-|.+++|.
T Consensus 66 nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l---pgnff~m~tlralyl~dnd---- 138 (264)
T KOG0617|consen 66 NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL---PGNFFYMTTLRALYLGDND---- 138 (264)
T ss_pred chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC---CcchhHHHHHHHHHhcCCC----
Confidence 566777888888899999999888888888788888999999999888776543 3456677888889999988
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CC---CCccceeeccCC
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GL---PSSLLQLWISGC 683 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~---~~~L~~L~l~~n 683 (729)
++.+|...+ .+++|+.|.+.+ +.+-.+|..++.++.|+.|++++ +.++.+|.+ +. ..+=+.+.+..|
T Consensus 139 fe~lp~dvg-------~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 139 FEILPPDVG-------KLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred cccCChhhh-------hhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhC
Confidence 888888885 789999999999 77888998899999999999999 678888774 11 233455555666
Q ss_pred ch
Q 038031 684 PL 685 (729)
Q Consensus 684 ~~ 685 (729)
|-
T Consensus 210 Pw 211 (264)
T KOG0617|consen 210 PW 211 (264)
T ss_pred CC
Confidence 54
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.9e-12 Score=127.51 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=55.3
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
++|+.|++++|.....-+.+|.....+++|.+.. +++..+....| +..|+.|++++|+ ++.+....| ..+.+|.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF-~~~~~l~~ 350 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAF-QTLFSLST 350 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCe-eEEEecccc-cccceeee
Confidence 7778888877775555556777777778888877 56776655444 6777778888777 555444444 66777777
Q ss_pred EEeecC
Q 038031 435 LNIQYC 440 (729)
Q Consensus 435 L~l~~c 440 (729)
|.+-.+
T Consensus 351 l~l~~N 356 (498)
T KOG4237|consen 351 LNLLSN 356 (498)
T ss_pred eehccC
Confidence 777553
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=1.7e-12 Score=113.16 Aligned_cols=141 Identities=24% Similarity=0.292 Sum_probs=125.1
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+++..+|..+..+.+|+.|++++|+|.+++..++.++.|+.|.++-|+.... ..+|+.+|-|+.|++++|+..
T Consensus 43 NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-----prgfgs~p~levldltynnl~-- 115 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-----PRGFGSFPALEVLDLTYNNLN-- 115 (264)
T ss_pred CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-----ccccCCCchhhhhhccccccc--
Confidence 6788889999999999999999999999998888999999999998877654 358999999999999999965
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCc
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCP 684 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~ 684 (729)
-..+|... ..++.|+.|++++ +..+.+|..++.+++|+.|.+++ +.+-++|.+ +-+..|++|++.+|.
T Consensus 116 e~~lpgnf-------f~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 116 ENSLPGNF-------FYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccCCcch-------hHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccce
Confidence 56677765 4789999999999 89999999999999999999999 567778876 668999999999995
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=9.3e-13 Score=130.85 Aligned_cols=283 Identities=17% Similarity=0.213 Sum_probs=160.3
Q ss_pred CCccEEEEccCCCCCc--CCC-CCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCCC
Q 038031 123 SNLVTLKFEDCGMCTA--LPS-VGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSSQ 199 (729)
Q Consensus 123 ~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 199 (729)
..|+.|.+++|..... +.. ...+|++++|.+.+|..+++........ .+++|++|.+..|..+++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~----~C~~l~~l~L~~c~~iT~~~Lk~l-- 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR----YCRKLRHLNLHSCSSITDVSLKYL-- 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH----hcchhhhhhhcccchhHHHHHHHH--
Confidence 4578888888875533 333 4478888888888887666654332222 278888888888887777654333
Q ss_pred CCccCCccceEeeccCccccc----cCCCCCCCccEEEEEccCCccc-----ccCCCCcccEEEEeCCCCceeecccccc
Q 038031 200 GVERFPKLRELQILRCSKLQG----TLPEHLPALQMLAIYKCEKLSI-----SITSLPALCKLVIGGCKKVVLRSATDHL 270 (729)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~l~~----~~~~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 270 (729)
...+++|++++++.|+.+++ .+...+..++.+...+|..+.. .-..++.+.++++..|..+++.....
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~-- 288 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL-- 288 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH--
Confidence 45688888888888887764 3333555566666666664433 11225556666666666555544210
Q ss_pred CcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHh
Q 038031 271 GLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQ 350 (729)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 350 (729)
+...+..|+.|...+|..+++... ........+|+.+.+..|..++.. ++.
T Consensus 289 --------------------i~~~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~-------~ft 339 (483)
T KOG4341|consen 289 --------------------IACGCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDR-------GFT 339 (483)
T ss_pred --------------------HhhhhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhh-------hhh
Confidence 112455666666666665544332 122345566666666666665443 333
Q ss_pred hhhhccCcccEEEeeecCCccc--ccccccCCCCccEEEeccCCCcccCCC------CCCcCCcceEEEecCCCCCcccc
Q 038031 351 QLCELSCRLEYLGLLYCEGLVK--LPQSSLSLCSLREIEIYNCSSLVSFPE------VALPSKLKKIQIRHCDALKSLPE 422 (729)
Q Consensus 351 ~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~l~~~~~l~~~~~ 422 (729)
.+..-++.|+.+++..|..... +-..-.+++.|+.|.+++|..+++-.. ...+..|+.+.+++|+.+++-.-
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 4444456666666666653321 222334566666666666655554310 01144555566666655444322
Q ss_pred ccccCCCCCccEEEeecCCCcc
Q 038031 423 AWMCDTNSSLEILNIQYCCSLR 444 (729)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~ 444 (729)
... ..+++|+.+++.+|..+.
T Consensus 420 e~l-~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 420 EHL-SICRNLERIELIDCQDVT 440 (483)
T ss_pred HHH-hhCcccceeeeechhhhh
Confidence 222 445555555555555444
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=8.3e-12 Score=124.23 Aligned_cols=284 Identities=20% Similarity=0.278 Sum_probs=194.1
Q ss_pred cccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccE
Q 038031 249 ALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKR 328 (729)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 328 (729)
-|+.|.+.+|....+...- .....+++++.|.+.+|..+++... ......++.|+.
T Consensus 139 ~lk~LSlrG~r~v~~sslr----------------------t~~~~CpnIehL~l~gc~~iTd~s~--~sla~~C~~l~~ 194 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR----------------------TFASNCPNIEHLALYGCKKITDSSL--LSLARYCRKLRH 194 (483)
T ss_pred ccccccccccccCCcchhh----------------------HHhhhCCchhhhhhhcceeccHHHH--HHHHHhcchhhh
Confidence 4677888888766655431 1223789999999999998776544 345678899999
Q ss_pred EEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCccc--ccccccCCCCccEEEeccCCCccc--C-CCCCCc
Q 038031 329 LTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVK--LPQSSLSLCSLREIEIYNCSSLVS--F-PEVALP 403 (729)
Q Consensus 329 L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~--l-~~~~~~ 403 (729)
+++..|.+++.. .++++...|++|++|+++-|+.+.. +.....++..++.+..++|..++. + ......
T Consensus 195 l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 195 LNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 999999998875 3445666679999999999986653 333456677788888888865542 1 113345
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc---CCCCCCCeEEEecCCCCcccccccCcccccc
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV---QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSS 480 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 480 (729)
..+.++++..|..+++.........+..|+.++.++|..+.+.... .-..+|+.+.+.+|..++.. .+....
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-----~ft~l~ 342 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-----GFTMLG 342 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-----hhhhhh
Confidence 6778888889988888765444467889999999999887766543 33367899999998876544 233333
Q ss_pred ccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC---
Q 038031 481 RRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE--- 557 (729)
Q Consensus 481 ~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~--- 557 (729)
.+.+ .|+.+++.+|....+ .+|.++ -.+++.|++|.+++| ..+.
T Consensus 343 rn~~--~Le~l~~e~~~~~~d--------~tL~sl---------------------s~~C~~lr~lslshc--e~itD~g 389 (483)
T KOG4341|consen 343 RNCP--HLERLDLEECGLITD--------GTLASL---------------------SRNCPRLRVLSLSHC--ELITDEG 389 (483)
T ss_pred cCCh--hhhhhcccccceehh--------hhHhhh---------------------ccCCchhccCChhhh--hhhhhhh
Confidence 3556 888888888755544 111111 135677777777777 4333
Q ss_pred -----CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCC
Q 038031 558 -----EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDD 604 (729)
Q Consensus 558 -----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~ 604 (729)
........|+.+.+++++.+.+.. -..+..+++|+.+++-+|..
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhh
Confidence 112233678888888888776544 24567777888888887764
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=3.6e-11 Score=125.58 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=31.4
Q ss_pred hhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCc------ccccccccCCCCccEEEeccC
Q 038031 319 LLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGL------VKLPQSSLSLCSLREIEIYNC 391 (729)
Q Consensus 319 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l------~~~~~~~~~l~~L~~L~l~~c 391 (729)
.+..+..|+.+++++|. ++.-........+. ..+++++++++++... ..++..+..+++|++|++++|
T Consensus 18 ~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~----~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 18 LLPKLLCLQVLRLEGNT-LGEEAAKALASALR----PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHhhccEEeecCCC-CcHHHHHHHHHHHh----hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 44555567777777654 22111111111111 2255666666665432 112233444556666666654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=1.5e-11 Score=128.53 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=70.7
Q ss_pred CCCCCccceEEEccCCCCCC-----CCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc-cccc
Q 038031 537 LHNLSCLQELTIIGGALPSL-----EEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT-VMVS 610 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l-----~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~-~~~~ 610 (729)
+..++.|++|++++|.+..- .......++|++|++++|.+...........+..+++|++|++++|.... .+..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 34455666777776655421 11122225677777777665433221112345566777777777776220 0001
Q ss_pred ccccccccCCccCCCCCcceEEcccCCCcc-----cccccCCCCCCccEEeecCCCCCCCCCCCC----C--C-Ccccee
Q 038031 611 FPLEDKRLGTALPLPASLTSLSISRFPNLE-----RLSSSIVDLQNLTELHLWDCPKLKYFPEKG----L--P-SSLLQL 678 (729)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~--~-~~L~~L 678 (729)
+..... ...+.|+.|++++| .++ .+...+..+++|+++++++| .+..-+... + . +.|+++
T Consensus 241 l~~~~~------~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 241 LASALL------SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred HHHHHh------ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhc
Confidence 111100 02367777777774 332 22344555677777777774 444332110 1 2 466777
Q ss_pred eccCCc
Q 038031 679 WISGCP 684 (729)
Q Consensus 679 ~l~~n~ 684 (729)
++.+||
T Consensus 313 ~~~~~~ 318 (319)
T cd00116 313 WVKDDS 318 (319)
T ss_pred ccCCCC
Confidence 776665
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=3e-09 Score=97.69 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccc
Q 038031 538 HNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKR 617 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 617 (729)
.+..++++|++.+|.|+.+......+.+|+.|++++|.+... ..+..++.|++|++++|. +..++....
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~----I~~i~~~l~- 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNR----ISSISEGLD- 84 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS-------S-CHHHH-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCC----CCccccchH-
Confidence 455678889999998888875444557888888888887763 356778888888888888 666653221
Q ss_pred cCCccCCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCCCCCCCCCC-----CCCCccceeeccCC
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCPKLKYFPEK-----GLPSSLLQLWISGC 683 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~n 683 (729)
..+|+|+.|++++ +++..+. ..+..+++|++|++.+||- ..-+.- ..+|+|+.||-..-
T Consensus 85 -----~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 -----KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -----HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -----HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 1367888888887 6777664 4566778888888888653 222221 11566777765543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.7e-09 Score=107.16 Aligned_cols=215 Identities=17% Similarity=0.216 Sum_probs=122.2
Q ss_pred hcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCC--cccccccccCCCCccEEEeccCCCcccCC
Q 038031 321 QDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEG--LVKLPQSSLSLCSLREIEIYNCSSLVSFP 398 (729)
Q Consensus 321 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 398 (729)
.++.+|++..+.+|+ +...+.. ...+.|++++.|+|+.|-. ...+......+|+|+.|+++. +.+....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~-------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE-------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh-------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCc
Confidence 456677788887766 4433322 1223348899999988743 334445667789999999988 4554432
Q ss_pred C---CCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcc-cccccCCCCCCCeEEEecCCCCcccccccC
Q 038031 399 E---VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLR-YIVEVQLPPSLKQLTIWRCDNIRTLTVEEG 474 (729)
Q Consensus 399 ~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 474 (729)
. ...++.|+.|.+++|. +..-........+|+|+.|++.++..+. .......+..|+.|++++.+.+. . +..
T Consensus 189 ~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~--~~~ 264 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-F--DQG 264 (505)
T ss_pred cccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-c--ccc
Confidence 2 1237789999999998 4433333333678999999998864322 11222445557777777655332 1 111
Q ss_pred ccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCC
Q 038031 475 IQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALP 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~ 554 (729)
... ..++ .|+.|.++.|. +.+ + .+..+..+ +....+++|+.|+++.|+|.
T Consensus 265 ~~~---~~l~--~L~~Lnls~tg-i~s-------------i-------~~~d~~s~----~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 265 YKV---GTLP--GLNQLNLSSTG-IAS-------------I-------AEPDVESL----DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccc---cccc--chhhhhccccC-cch-------------h-------cCCCccch----hhhcccccceeeecccCccc
Confidence 111 1344 55555555531 111 1 11111111 11246678888888888775
Q ss_pred CCC--CCCCCCCCcceEEecCchhhh
Q 038031 555 SLE--EEDGLPTNLQSLDIRGNMEIC 578 (729)
Q Consensus 555 ~l~--~~~~~~~~L~~L~L~~~~~~~ 578 (729)
+.+ ......++|+.|.+..|.+..
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccchhhccchhhhhhcccccccc
Confidence 555 344455777777777766654
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.4e-08 Score=114.82 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=58.9
Q ss_pred CCCccEEEEeccCC-CchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 295 IPKLEELEIKNIKN-ETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 295 l~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+.|++|-+..... +..++. .+|..++.|+.|++++|..+..++.. +..+ .+|++|++++.. +..+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~-I~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTG-ISHL 610 (889)
T ss_pred CCccceEEEeecchhhhhcCH---HHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCC-cccc
Confidence 34566666655332 223322 44566666666666666666555443 3333 566666666655 4456
Q ss_pred cccccCCCCccEEEeccCCCcccCCCCCC-cCCcceEEEecC
Q 038031 374 PQSSLSLCSLREIEIYNCSSLVSFPEVAL-PSKLKKIQIRHC 414 (729)
Q Consensus 374 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~ 414 (729)
|..+.++..|.+|++..+..+..++.... +.+|++|.+...
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666666666666666555555543333 566666666543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=8.2e-09 Score=98.51 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=106.9
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
+..++.|+++|+++|.|+.+.......|.++.|+++.|.+... ..++.+++|+.|++|+|. +..+..+..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~----Ls~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNL----LAECVGWHL 349 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccch----hHhhhhhHh
Confidence 3567889999999999888887777789999999999998874 346889999999999998 777766653
Q ss_pred ccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCC---CCCCCCccceeeccCCch
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFP---EKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~n~~ 685 (729)
.+-+.++|.++. +.++.+ .++..+-+|..|++++ |+++.+. ..|.++-|+.+.+.+||.
T Consensus 350 -------KLGNIKtL~La~-N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 -------KLGNIKTLKLAQ-NKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred -------hhcCEeeeehhh-hhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 678899999999 788888 6788899999999999 4566553 346688899999999984
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=6.1e-08 Score=92.67 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=94.8
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+.++.+..++.-.|.++.|++++|.|..+.. ...+++|+.|||++|....... --.++-++++|.+++|.
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G-----wh~KLGNIKtL~La~N~---- 363 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVG-----WHLKLGNIKTLKLAQNK---- 363 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhh-----hHhhhcCEeeeehhhhh----
Confidence 3445555666778999999999998877776 5566999999999998775432 22568899999999998
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCCCCC
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCPKLK 664 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~ 664 (729)
++.++.-. .+-+|..|++++ +++..+. ..++++|-|+++.+.+||.-.
T Consensus 364 iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 364 IETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88887654 678999999999 8898886 789999999999999976443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.6e-08 Score=99.28 Aligned_cols=210 Identities=18% Similarity=0.170 Sum_probs=140.0
Q ss_pred ccccccCCceeEecCccCCCChhhhhhcccCCcccCCceEEEEeeCCCCCCCchhhhHHhhhccCCCCCCccEEEEeeeC
Q 038031 30 LKLLMHLRGALEISKLENVKDIGDAKEAGLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLDQFCVCGYG 109 (729)
Q Consensus 30 l~~l~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 109 (729)
-+++++|+ +..+.++. +...+.. .....+++++.|||+. ..-.....+....+++|+|+.|+|+.|.
T Consensus 117 Qsn~kkL~-~IsLdn~~-V~~~~~~--~~~k~~~~v~~LdLS~---------NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 117 QSNLKKLR-EISLDNYR-VEDAGIE--EYSKILPNVRDLDLSR---------NLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhhHHhhh-heeecCcc-ccccchh--hhhhhCCcceeecchh---------hhHHhHHHHHHHHHhcccchhccccccc
Confidence 45688888 77776532 2222211 4578899999999984 2244566777888899999999999888
Q ss_pred CCCCCcccCCCCCCCccEEEEccCCCC-CcCC-CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccc
Q 038031 110 GTKFPTWLGDSSFSNLVTLKFEDCGMC-TALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQ 187 (729)
Q Consensus 110 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 187 (729)
...+-+......++.|+.|.++.|... ..+. .+..+|+|+.|++.+|..+...... -..++.|+.|++++.+
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~------~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS------TKILQTLQELDLSNNN 257 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch------hhhhhHHhhccccCCc
Confidence 665544444446899999999999743 2222 3568999999999998533222211 1337889999999865
Q ss_pred cccccccCCCCCCCccCCccceEeeccCccccccCCC--------CCCCccEEEEEccCC--ccc--ccCCCCcccEEEE
Q 038031 188 EWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLPE--------HLPALQMLAIYKCEK--LSI--SITSLPALCKLVI 255 (729)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~L~~L~l~~~~~--l~~--~~~~l~~L~~L~l 255 (729)
.+..-.... .+.+|.|..|+++.|..-.-.+|. .+++|+.|.+..|+. +.. .+..+++|+.|.+
T Consensus 258 li~~~~~~~----~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 258 LIDFDQGYK----VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccccccc----cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 443221111 578999999999877421112222 578899999888874 321 3444677777777
Q ss_pred eCCCCce
Q 038031 256 GGCKKVV 262 (729)
Q Consensus 256 ~~~~~~~ 262 (729)
..+...+
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 7665444
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=8.4e-07 Score=91.59 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCC--CCCCCCCCCccceeeccCCchhHH
Q 038031 625 PASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLK--YFPEKGLPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 625 l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~L~~L~l~~n~~l~~ 688 (729)
+++|++|++++|..+ .+|..+. .+|+.|+++.+. .+ .++...+++++ .|++.+|-.+..
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~-~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ-KTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc-cccccCccccccccc-EechhhhcccCH
Confidence 456666666665433 2333333 456666665431 11 22333344555 566665544333
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=1.2e-07 Score=87.31 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=41.4
Q ss_pred CCCCcceEEecCchhhhhhhhhccCCCC-CCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcc
Q 038031 562 LPTNLQSLDIRGNMEICKSLIERGRGFH-RFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLE 640 (729)
Q Consensus 562 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 640 (729)
.+..+++|+|++|.+...- .+. .+.+|+.|++++|. +..++.-. .++.|++|++++ +.++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~----I~~l~~l~--------~L~~L~~L~L~~-N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQ----ITKLEGLP--------GLPRLKTLDLSN-NRIS 77 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS------S--TT------------TT--EEE--S-S---
T ss_pred ccccccccccccccccccc------chhhhhcCCCEEECCCCC----CccccCcc--------ChhhhhhcccCC-CCCC
Confidence 3467899999999988642 344 58899999999999 77776533 589999999999 8899
Q ss_pred cccccC-CCCCCccEEeecCCCCCCCCCCCC---CCCccceeeccCCchh
Q 038031 641 RLSSSI-VDLQNLTELHLWDCPKLKYFPEKG---LPSSLLQLWISGCPLI 686 (729)
Q Consensus 641 ~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~n~~l 686 (729)
.+..++ ..+|+|++|++++ |.+..+.... .+++|+.|++.+||--
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 986555 4699999999998 6788876632 2789999999999963
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=3.9e-07 Score=105.09 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=41.6
Q ss_pred CcccEEEeeecCCccccccc-----cc-CCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCC
Q 038031 357 CRLEYLGLLYCEGLVKLPQS-----SL-SLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNS 430 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~-----~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 430 (729)
.+|++|.+.+|........+ .. .++++..+.+.+|.....+....++++|+.|.+.+|..+.++.... ..+.
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~--k~~~ 794 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL--KALL 794 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH--HHhh
Confidence 56666666666653321111 11 2455666666666666665555567777777777777665544332 3444
Q ss_pred CccE
Q 038031 431 SLEI 434 (729)
Q Consensus 431 ~L~~ 434 (729)
.+..
T Consensus 795 ~l~~ 798 (889)
T KOG4658|consen 795 ELKE 798 (889)
T ss_pred hccc
Confidence 4443
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=1.3e-06 Score=90.32 Aligned_cols=89 Identities=31% Similarity=0.517 Sum_probs=52.1
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
.++++|++++| .++.+|. -.++|++|.+++|..++.+|. ..+++|++|++++|..+..+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~--------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE--------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc--------ccceEE
Confidence 67777777777 4566662 223577777777777776663 2356777777777755555442 355555
Q ss_pred eecCCCcccccccCCCCCCCeEEEe
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIW 461 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~ 461 (729)
+.. .....+ ..+|++|+.|.+.
T Consensus 119 L~~-n~~~~L--~~LPssLk~L~I~ 140 (426)
T PRK15386 119 IKG-SATDSI--KNVPNGLTSLSIN 140 (426)
T ss_pred eCC-CCCccc--ccCcchHhheecc
Confidence 543 222221 2455556666654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=2.2e-06 Score=92.26 Aligned_cols=116 Identities=28% Similarity=0.345 Sum_probs=86.1
Q ss_pred cccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccc
Q 038031 530 LEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMV 609 (729)
Q Consensus 530 l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 609 (729)
+..+|......+.|+.|++++|++..++.....+..|++|.+++|+..... ..+.++.++..+.+.+|. +.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n~----~~ 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNNK----LE 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCce----ee
Confidence 333444344678899999999988888876666677999999998644432 256778888888888877 55
Q ss_pred cccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCC
Q 038031 610 SFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKL 663 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 663 (729)
.++... ..++++++|++++ +.++.++. +..+.+|+.|+++++...
T Consensus 246 ~~~~~~-------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DLPESI-------GNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccchh-------ccccccceecccc-cccccccc-ccccCccCEEeccCcccc
Confidence 544444 3678899999998 78888866 888899999999985433
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.3e-08 Score=91.83 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=116.2
Q ss_pred CccEEEEEccC----CcccccCCCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEE
Q 038031 228 ALQMLAIYKCE----KLSISITSLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEI 303 (729)
Q Consensus 228 ~L~~L~l~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 303 (729)
.||++++++.. .+...+..|.+|+.|++.+.......... .+.-.+|+.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~------------------------iAkN~~L~~lnl 241 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT------------------------IAKNSNLVRLNL 241 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH------------------------Hhccccceeecc
Confidence 46777776544 22224556888888888877644322110 114578999999
Q ss_pred eccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCC-cc--cccccccCC
Q 038031 304 KNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEG-LV--KLPQSSLSL 380 (729)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-l~--~~~~~~~~l 380 (729)
+.|++++.... ...+.+++.|.+|++++|.-.+.. ....+....++|+.|+|++|.. +. .+......+
T Consensus 242 sm~sG~t~n~~--~ll~~scs~L~~LNlsWc~l~~~~-------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 242 SMCSGFTENAL--QLLLSSCSRLDELNLSWCFLFTEK-------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred ccccccchhHH--HHHHHhhhhHhhcCchHhhccchh-------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 99998876544 345789999999999999754432 1112223447999999999853 21 233345679
Q ss_pred CCccEEEeccCCCcccC--CCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecC
Q 038031 381 CSLREIEIYNCSSLVSF--PEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYC 440 (729)
Q Consensus 381 ~~L~~L~l~~c~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 440 (729)
|+|.+||+++|..++.- .....++.|++|.++.|..+..-.-..+ .+.|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc
Confidence 99999999998877751 1122267899999999875432211111 67788888888776
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.8e-06 Score=92.97 Aligned_cols=149 Identities=28% Similarity=0.347 Sum_probs=115.7
Q ss_pred ccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCC
Q 038031 511 TLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHR 590 (729)
Q Consensus 511 ~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 590 (729)
.|+.| ++.+ +.+..+|..+..+++|+.|++++|++..++...+..++|+.|++++|.+..... ....
T Consensus 141 nL~~L-------~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-----~~~~ 207 (394)
T COG4886 141 NLKEL-------DLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP-----EIEL 207 (394)
T ss_pred hcccc-------cccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch-----hhhh
Confidence 56666 4444 566666666788999999999999999998766577999999999998876543 1234
Q ss_pred CCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCC
Q 038031 591 FSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKG 670 (729)
Q Consensus 591 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 670 (729)
...|+++.+++|. ....+... ..+..+..+.+.+ +.+..++..++.++++++|++++ +.+.+++..+
T Consensus 208 ~~~L~~l~~~~N~----~~~~~~~~-------~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~ 274 (394)
T COG4886 208 LSALEELDLSNNS----IIELLSSL-------SNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLG 274 (394)
T ss_pred hhhhhhhhhcCCc----ceecchhh-------hhcccccccccCC-ceeeeccchhccccccceecccc-cccccccccc
Confidence 5569999999986 33444333 3678888888777 77877778889999999999999 6899998866
Q ss_pred CCCccceeeccCCch
Q 038031 671 LPSSLLQLWISGCPL 685 (729)
Q Consensus 671 ~~~~L~~L~l~~n~~ 685 (729)
...+++.|++++|..
T Consensus 275 ~~~~l~~L~~s~n~~ 289 (394)
T COG4886 275 SLTNLRELDLSGNSL 289 (394)
T ss_pred ccCccCEEeccCccc
Confidence 688999999999754
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=3.8e-07 Score=89.58 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=37.3
Q ss_pred hhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcc----cccccccCCCCccEEEeccC
Q 038031 318 ELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLV----KLPQSSLSLCSLREIEIYNC 391 (729)
Q Consensus 318 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c 391 (729)
..+..++.|++|++++|- ++.= +...-+..+....|+|+.|.+.+|.+-. .+...+...|.|..|++++|
T Consensus 235 kaL~s~~~L~El~l~dcl-l~~~---Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCL-LENE---GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHhcccchheeecccccc-cccc---cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 345666777777777775 3221 1112233333345677777777766422 12223344666667777664
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.09 E-value=3e-07 Score=95.69 Aligned_cols=123 Identities=27% Similarity=0.306 Sum_probs=82.2
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCc
Q 038031 542 CLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTA 621 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~ 621 (729)
-|+.|-+++|++..++..++..+.|..||.+.|.+..... -+..+.+|+.|++..|. +..+|.+..
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-----ql~~l~slr~l~vrRn~----l~~lp~El~----- 209 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-----QLGYLTSLRDLNVRRNH----LEDLPEELC----- 209 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-----HhhhHHHHHHHHHhhhh----hhhCCHHHh-----
Confidence 3666667777666666555566677777777766655432 45667777777777777 777776551
Q ss_pred cCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCC----CCCCCccceeeccCC
Q 038031 622 LPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPE----KGLPSSLLQLWISGC 683 (729)
Q Consensus 622 ~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~n 683 (729)
--.|..||++. |++..||..|.+|+.|++|.+.+|+ +++-|. .|..--+|+|++.-|
T Consensus 210 ---~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 ---SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---CCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 34577777776 7788888778888888888887743 555443 244445677777766
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=7.6e-06 Score=61.45 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=34.1
Q ss_pred CCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCC
Q 038031 592 SSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 592 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 660 (729)
|+|++|++++|. +..+|... |..+++|++|++++ +.++.++ ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~----l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK----LTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST----ESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC----CCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 345666666665 55555432 24556666666665 5556665 45666666666666664
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=6.9e-06 Score=61.68 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=27.3
Q ss_pred ccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 542 CLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
+|++|++++|++..++ .....+++|++|++++|.+.... ...|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP----PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE----TTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC----HHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 23333455555555544443322 1244455555555555443
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=3.7e-07 Score=97.57 Aligned_cols=126 Identities=25% Similarity=0.282 Sum_probs=103.0
Q ss_pred CCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccC
Q 038031 540 LSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLG 619 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 619 (729)
+-.|...+.++|.+..+.......+.|+.|+|++|++.... .+..++.|++|||++|+ +..+|....
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~----L~~vp~l~~--- 229 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNC----LRHVPQLSM--- 229 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccch----hccccccch---
Confidence 34788888899988888877788899999999999998864 45889999999999999 788886431
Q ss_pred CccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC---CCCCccceeeccCCch
Q 038031 620 TALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK---GLPSSLLQLWISGCPL 685 (729)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~n~~ 685 (729)
.--+|+.|.+++ |.++.+ .++.++.+|+.||++. |.+...... +.+.+|+.|++.|||.
T Consensus 230 ----~gc~L~~L~lrn-N~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 230 ----VGCKLQLLNLRN-NALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ----hhhhheeeeecc-cHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 224599999999 888888 7899999999999999 455554442 3377899999999985
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.79 E-value=2.4e-06 Score=89.22 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=116.9
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+.++.+|..+.++..|+.++++.|+++.++..+.. --|+.|-+++|++..... .++.++.|.+|+.+.|.
T Consensus 108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sNNkl~~lp~-----~ig~~~tl~~ld~s~ne---- 177 (722)
T KOG0532|consen 108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNKLTSLPE-----EIGLLPTLAHLDVSKNE---- 177 (722)
T ss_pred ccceecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEecCccccCCc-----ccccchhHHHhhhhhhh----
Confidence 56677888899999999999999999999855544 358999999998876533 55688999999999999
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCch
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPL 685 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~ 685 (729)
+..+|...+ .+.+|+.|.+.. +.+..+|..+. .-.|..||++. |++..+|.. ..++.|++|-+.+||.
T Consensus 178 i~slpsql~-------~l~slr~l~vrR-n~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 178 IQSLPSQLG-------YLTSLRDLNVRR-NHLEDLPEELC-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhchHHhh-------hHHHHHHHHHhh-hhhhhCCHHHh-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCCC
Confidence 889998774 789999999999 78999997777 55789999987 789999986 3489999999999985
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.1e-06 Score=84.41 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccc---cCCCCCCCccEEEEEccC
Q 038031 175 FPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG---TLPEHLPALQMLAIYKCE 238 (729)
Q Consensus 175 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~L~~L~l~~~~ 238 (729)
+|+|.+|+++++..++.-.... +.+|+.|++|.++.|-.+.- ......|+|..|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~----~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQE----FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHHH----HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 5555555555554444322111 45566666666666643210 001145666777766654
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.71 E-value=4.1e-05 Score=86.64 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=47.6
Q ss_pred cceEEEccCCCC-CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCc
Q 038031 543 LQELTIIGGALP-SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTA 621 (729)
Q Consensus 543 L~~L~l~~~~i~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~ 621 (729)
++.|++++|.+. .++..++.+++|+.|+|++|.+.+.++. .+..+++|+.|++++|.+ .+.+|...
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~l---sg~iP~~l------ 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSF---NGSIPESL------ 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCC---CCCCchHH------
Confidence 445555555444 2333334445555555555555443332 344455555555555542 22344333
Q ss_pred cCCCCCcceEEcccCCCcccccccCCC-CCCccEEeecCCC
Q 038031 622 LPLPASLTSLSISRFPNLERLSSSIVD-LQNLTELHLWDCP 661 (729)
Q Consensus 622 ~~~l~~L~~L~l~~~~~l~~l~~~~~~-l~~L~~L~l~~c~ 661 (729)
..+++|+.|++++|.....+|..+.. +.++..+++.+|+
T Consensus 487 -~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 487 -GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 24455555555553333344433332 2334445555443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=2.6e-06 Score=83.85 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccc
Q 038031 562 LPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLER 641 (729)
Q Consensus 562 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 641 (729)
..+.|+++....|+.-..........|+..+.|+.+.++.|... ...+ .-...++..+++|+.|++.+|..-..
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~--~eG~----~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR--PEGV----TALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc--Cchh----HHHHHHHHhCCcceeeecccchhhhH
Confidence 34556666666555544433323344555556666666655422 1111 01112334556666666665322111
Q ss_pred ----ccccCCCCCCccEEeecCC
Q 038031 642 ----LSSSIVDLQNLTELHLWDC 660 (729)
Q Consensus 642 ----l~~~~~~l~~L~~L~l~~c 660 (729)
+...+..++.|+.|++++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHhcccchheeeccccc
Confidence 1134445555666666665
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=7.1e-05 Score=68.32 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=93.5
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCcc
Q 038031 543 LQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTAL 622 (729)
Q Consensus 543 L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~ 622 (729)
=+++++.+.+++.+........+...+||++|.+... ..|..++.|.+|.+.+|+ +..+....+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNr----It~I~p~L~------ 84 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNR----ITRIDPDLD------ 84 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc------ccCCCccccceEEecCCc----ceeeccchh------
Confidence 4556666665555554334446788899999987763 467889999999999999 777776554
Q ss_pred CCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCCCCCCCCCC-----CCCCccceeeccCCch
Q 038031 623 PLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCPKLKYFPEK-----GLPSSLLQLWISGCPL 685 (729)
Q Consensus 623 ~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~n~~ 685 (729)
..+|+|+.|.+.+ +.+.++. ..+..||.|++|.+-+|+ ++....- ..+++|+.||+.+=..
T Consensus 85 ~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 85 TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 5789999999999 7788876 567889999999999954 5554432 1278999999987643
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=3.9e-07 Score=97.38 Aligned_cols=87 Identities=23% Similarity=0.208 Sum_probs=56.1
Q ss_pred cCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
.+..++.|++|||++|++..++.+...--.|..|.+++|....- .++.++.+|+.||+++|. +..+..-.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL------~gie~LksL~~LDlsyNl----l~~hseL~ 273 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL------RGIENLKSLYGLDLSYNL----LSEHSELE 273 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh------hhHHhhhhhhccchhHhh----hhcchhhh
Confidence 45677888888888888777774333333488888888877653 355778888888888876 44433211
Q ss_pred cccCCccCCCCCcceEEcccCC
Q 038031 616 KRLGTALPLPASLTSLSISRFP 637 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~ 637 (729)
.+..+..|+.|.|.+|+
T Consensus 274 -----pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 274 -----PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -----HHHHHHHHHHHhhcCCc
Confidence 01135667777777744
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=1e-05 Score=87.30 Aligned_cols=237 Identities=21% Similarity=0.228 Sum_probs=133.4
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC-CCCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE-VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
..++.+++..+.. ..+-..+..+.+|+.|++.+ +.++.+.. ...+++|++|++++|. ++.+... ..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i-~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLI-AKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhh-hhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccch---hhccchhhh
Confidence 4555555554442 22222355566777777766 56666655 4556666666666666 4444443 444556666
Q ss_pred EeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccc
Q 038031 436 NIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESL 515 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 515 (729)
+++++ .+..+.... .++ .|+.++++++. +
T Consensus 146 ~l~~N-~i~~~~~~~-------------------------------~l~--~L~~l~l~~n~-i---------------- 174 (414)
T KOG0531|consen 146 NLSGN-LISDISGLE-------------------------------SLK--SLKLLDLSYNR-I---------------- 174 (414)
T ss_pred eeccC-cchhccCCc-------------------------------cch--hhhcccCCcch-h----------------
Confidence 66552 222221110 112 45555555421 1
Q ss_pred cccccccccccCcccccccCc-CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC-
Q 038031 516 EVGNLPPSLKSLSRLEALPKG-LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS- 593 (729)
Q Consensus 516 ~~~~~~~~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~- 593 (729)
..+... ...+.+++.+++.+|.+..+.... ....+..+++..|.+.... .+..+..
T Consensus 175 ---------------~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~-~~~~l~~~~l~~n~i~~~~------~l~~~~~~ 232 (414)
T KOG0531|consen 175 ---------------VDIENDELSELISLEELDLGGNSIREIEGLD-LLKKLVLLSLLDNKISKLE------GLNELVML 232 (414)
T ss_pred ---------------hhhhhhhhhhccchHHHhccCCchhcccchH-HHHHHHHhhcccccceecc------CcccchhH
Confidence 111100 356678888899998666665222 2245555577777766532 2334444
Q ss_pred -cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCC---CC-
Q 038031 594 -LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYF---PE- 668 (729)
Q Consensus 594 -L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l---~~- 668 (729)
|+.+.+++|. +..++... ..++.+..|++.+ +++..+ ..+...+.+..++...+...... ..
T Consensus 233 ~L~~l~l~~n~----i~~~~~~~-------~~~~~l~~l~~~~-n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 233 HLRELYLSGNR----ISRSPEGL-------ENLKNLPVLDLSS-NRISNL-EGLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred HHHHHhcccCc----cccccccc-------cccccccccchhh-cccccc-ccccccchHHHhccCcchhcchhhhhccc
Confidence 8899999988 55554333 2578888888888 666665 45666777777777775433121 11
Q ss_pred -CCCCCccceeeccCCch
Q 038031 669 -KGLPSSLLQLWISGCPL 685 (729)
Q Consensus 669 -~~~~~~L~~L~l~~n~~ 685 (729)
....++++...+.+||.
T Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccccccccccccccCcc
Confidence 23367788888888875
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.55 E-value=0.00011 Score=83.09 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=63.5
Q ss_pred cceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccccc
Q 038031 566 LQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSS 645 (729)
Q Consensus 566 L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 645 (729)
++.|+|++|.+.+..+. .+..+++|+.|++++|.+ .+.+|... ..+++|+.|++++|.....+|..
T Consensus 420 v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l---~g~iP~~~-------~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSI---RGNIPPSL-------GSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcc---cCcCChHH-------hCCCCCCEEECCCCCCCCCCchH
Confidence 56666666666554442 456666777777777663 23555444 25667777777764433456666
Q ss_pred CCCCCCccEEeecCCCCCCCCCCC--CCCCccceeeccCCchhH
Q 038031 646 IVDLQNLTELHLWDCPKLKYFPEK--GLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 646 ~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~l~ 687 (729)
+..+++|++|++++|+....+|.. ..+.++..+++.+|+.+.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 666777777777766555555543 113345566666666544
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=3.1e-05 Score=85.93 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=9.5
Q ss_pred cCCCccEEEeccCCCccc
Q 038031 322 DICSLKRLTIRRCPKIQS 339 (729)
Q Consensus 322 ~l~~L~~L~l~~c~~l~~ 339 (729)
.++.|+.+.+.+|..+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~ 203 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITD 203 (482)
T ss_pred hCchhhHhhhcccccCCh
Confidence 345555555555554443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.21 E-value=0.0003 Score=48.29 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCC
Q 038031 626 ASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 626 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
++|++|++++ ++++.+|..+.+|++|++|++++| .+++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3566677776 566667655677777777777774 455443
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=2.2e-05 Score=87.13 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=22.2
Q ss_pred cceEEEecCCCCCccccccccCCCCCccEEEeecCCCccc
Q 038031 406 LKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRY 445 (729)
Q Consensus 406 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 445 (729)
++.|+++.|...+...-......+.+++.+++.+|..+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 6777777776554433222111255667777777765543
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.15 E-value=0.0001 Score=79.52 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=53.8
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc-c
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE-D 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~-~ 615 (729)
+..+++|++|++++|.|.++.+.... +.|+.|++.+|.+... ..+..+++|+.+++++|. +..+... .
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l-~~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~----i~~ie~~~~ 182 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTL-TLLKELNLSGNLISDI------SGLESLKSLKLLDLSYNR----IVDIENDEL 182 (414)
T ss_pred hhhhhcchheeccccccccccchhhc-cchhhheeccCcchhc------cCCccchhhhcccCCcch----hhhhhhhhh
Confidence 34444555555555544444422222 2355555555544432 123334445555555544 3333320 0
Q ss_pred cccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCc--cceeeccCCch
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSS--LLQLWISGCPL 685 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~--L~~L~l~~n~~ 685 (729)
..+.+++.+.+.+ +.+..+ .++..+..+..+++.. +.+..+-....... |+.+++.+|+.
T Consensus 183 -------~~~~~l~~l~l~~-n~i~~i-~~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 183 -------SELISLEELDLGG-NSIREI-EGLDLLKKLVLLSLLD-NKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred -------hhccchHHHhccC-Cchhcc-cchHHHHHHHHhhccc-ccceeccCcccchhHHHHHHhcccCcc
Confidence 1234444444444 333333 2222233333334444 23333322111222 67777777764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00033 Score=67.72 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=20.4
Q ss_pred cCCcceEEEecCCCCCccc-cccccCCCCCccEEEeec
Q 038031 403 PSKLKKIQIRHCDALKSLP-EAWMCDTNSSLEILNIQY 439 (729)
Q Consensus 403 ~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~ 439 (729)
.+.++.+|+.+|. +.+.. ...++..+|.|+.|+++.
T Consensus 70 ~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 70 VTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred hhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC
Confidence 4566667776666 33322 122226777777777754
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.03 E-value=0.0005 Score=47.21 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=15.2
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcceEEecCchh
Q 038031 542 CLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNME 576 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~ 576 (729)
+|++|++++|+|..+++.++.+++|++|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 44555555555444443333444444444444433
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00017 Score=81.38 Aligned_cols=95 Identities=18% Similarity=0.089 Sum_probs=59.0
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
..++|+|..||+|+++++++. ..+.+++|++|.+.+-.+..... ...+..|++|+.||+|..... .-+....
T Consensus 169 c~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~~~~----~~~~ii~ 240 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRDKNN----DDTKIIE 240 (699)
T ss_pred hhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhh---HHHHhcccCCCeeeccccccc----cchHHHH
Confidence 467788888888888877773 44556888888887766654221 225567888888888886522 2121111
Q ss_pred ccCCccCCCCCcceEEcccCCCcc
Q 038031 617 RLGTALPLPASLTSLSISRFPNLE 640 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~ 640 (729)
.+.+-...+|+|+.||.++ ..+.
T Consensus 241 qYlec~~~LpeLrfLDcSg-Tdi~ 263 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSG-TDIN 263 (699)
T ss_pred HHHHhcccCccccEEecCC-cchh
Confidence 1111223578888888887 4443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00039 Score=78.58 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccc
Q 038031 562 LPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLER 641 (729)
Q Consensus 562 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 641 (729)
.+|+|++|.+++-.+....+ .....++|+|..||||+.+ +..+.. + +.+++|+.|.+.+.. +..
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~Tn----I~nl~G-I-------S~LknLq~L~mrnLe-~e~ 209 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTN----ISNLSG-I-------SRLKNLQVLSMRNLE-FES 209 (699)
T ss_pred hCcccceEEecCceecchhH---HHHhhccCccceeecCCCC----ccCcHH-H-------hccccHHHHhccCCC-CCc
Confidence 34566666665544433322 2234556666666666655 444422 2 245666666665522 222
Q ss_pred cc--ccCCCCCCccEEeecCCCCCCCC-------CCCCCCCccceeeccCCch
Q 038031 642 LS--SSIVDLQNLTELHLWDCPKLKYF-------PEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 642 l~--~~~~~l~~L~~L~l~~c~~l~~l-------~~~~~~~~L~~L~l~~n~~ 685 (729)
-. ..+-++.+|+.||+|.-.....- .....+|.|+.||.++...
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 11 34455666666666663222211 0112256777777776643
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00044 Score=66.90 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=55.0
Q ss_pred hhhhccCcccEEEeeecCCc--ccccccccCCCCccEEEeccCCCccc-CCCC-CCcCCcceEEEecCCCCCcccccccc
Q 038031 351 QLCELSCRLEYLGLLYCEGL--VKLPQSSLSLCSLREIEIYNCSSLVS-FPEV-ALPSKLKKIQIRHCDALKSLPEAWMC 426 (729)
Q Consensus 351 ~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~ 426 (729)
.++..+..+++++|..|... .++.....++|.|++|+++. +.+.. |... ....+|++|.+.+.. +..-....+.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l 142 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSL 142 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCC-CChhhhhhhh
Confidence 33444578888999888643 34555667899999999986 44432 3222 235688888887765 4332222222
Q ss_pred CCCCCccEEEeec
Q 038031 427 DTNSSLEILNIQY 439 (729)
Q Consensus 427 ~~l~~L~~L~l~~ 439 (729)
..+|.++++.++.
T Consensus 143 ~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 143 DDLPKVTELHMSD 155 (418)
T ss_pred hcchhhhhhhhcc
Confidence 6677777777776
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.66 E-value=0.00013 Score=62.26 Aligned_cols=114 Identities=15% Similarity=0.023 Sum_probs=81.1
Q ss_pred CccceEEEccCCCCCCC---CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccc
Q 038031 541 SCLQELTIIGGALPSLE---EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKR 617 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 617 (729)
..+..+++++|++-.+. ........|+..+|++|.+...... .-..++.++.|++++|. +..+|.+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~ne----isdvPeE~-- 96 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNE----ISDVPEEL-- 96 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhh----hhhchHHH--
Confidence 45667888888665554 2233336778888888877654332 33556788888888888 88888765
Q ss_pred cCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL 671 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 671 (729)
..+|.|+.|+++. +.+...|..+..+.+|-.|+..+ +....++...+
T Consensus 97 -----Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~dl~ 143 (177)
T KOG4579|consen 97 -----AAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVDLF 143 (177)
T ss_pred -----hhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCC-CccccCcHHHh
Confidence 3678888888888 66777777777788888888877 56777776533
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=6.8e-05 Score=63.92 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=40.4
Q ss_pred cceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccccc
Q 038031 566 LQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSS 645 (729)
Q Consensus 566 L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 645 (729)
+..++|+.|.+...... ...+.....|...+|++|. +..+|.... ..++..+.|++.+ +.++++|..
T Consensus 29 ~h~ldLssc~lm~i~da--vy~l~~~~el~~i~ls~N~----fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE 95 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADA--VYMLSKGYELTKISLSDNG----FKKFPKKFT------IKFPTATTLNLAN-NEISDVPEE 95 (177)
T ss_pred hhhcccccchhhHHHHH--HHHHhCCceEEEEecccch----hhhCCHHHh------hccchhhhhhcch-hhhhhchHH
Confidence 34455555544422211 1233444445555555555 555554432 2344555555555 555555544
Q ss_pred CCCCCCccEEeecCC
Q 038031 646 IVDLQNLTELHLWDC 660 (729)
Q Consensus 646 ~~~l~~L~~L~l~~c 660 (729)
+..++.|+.|+++.|
T Consensus 96 ~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFN 110 (177)
T ss_pred HhhhHHhhhcccccC
Confidence 555555555555553
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.006 Score=56.10 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.8
Q ss_pred cCCCCCccceEEEccCCCCCCCCCCC-CCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLEEEDG-LPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.|.+++.|.+|.+++|+|..|.+..+ ..++|+.|.+.+|++..... ...+..+|.|++|.+-+|. ++....-
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Np----v~~k~~Y 131 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNP----VEHKKNY 131 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCc----hhcccCc
Confidence 45678899999999998888874443 44789999999988876543 3467778888888888876 4433221
Q ss_pred ccccCCccCCCCCcceEEccc
Q 038031 615 DKRLGTALPLPASLTSLSISR 635 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~ 635 (729)
-. -....+|+|++||.++
T Consensus 132 R~---yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RL---YVLYKLPSLRTLDFQK 149 (233)
T ss_pred ee---EEEEecCcceEeehhh
Confidence 00 0012456777777665
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.00092 Score=64.15 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=55.8
Q ss_pred CCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccC
Q 038031 540 LSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLG 619 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 619 (729)
+.+.++|+.++|.+..|.- ...++.|++|.|+-|++..-. .+..|++|++|.|..|+ +..+.+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~----I~sldEL----- 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNC----IESLDEL----- 81 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcc----cccHHHH-----
Confidence 4566777777776665542 223366666666666665432 33555555555555555 3333221
Q ss_pred CccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC------CCCCccceee
Q 038031 620 TALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK------GLPSSLLQLW 679 (729)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~ 679 (729)
..+.++|+|++|++..||=.+.-+.. ..+++|+.||
T Consensus 82 ------------------------~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 ------------------------EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ------------------------HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 44566777777777776655444332 1156666664
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.37 E-value=0.0064 Score=58.37 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=58.5
Q ss_pred CCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccccc
Q 038031 539 NLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRL 618 (729)
Q Consensus 539 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 618 (729)
.+..|+.|++.++.++.+..+- .+++|+.|+++.|........ ...+..+|+|+++++++|... .+.+++.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l--~vl~e~~P~l~~l~ls~Nki~-~lstl~p----- 111 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGL--EVLAEKAPNLKVLNLSGNKIK-DLSTLRP----- 111 (260)
T ss_pred cccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccc--eehhhhCCceeEEeecCCccc-cccccch-----
Confidence 4455555556666554444322 226777777777733222111 223455677777777777721 1222222
Q ss_pred CCccCCCCCcceEEcccCCCccccc----ccCCCCCCccEEeecCC
Q 038031 619 GTALPLPASLTSLSISRFPNLERLS----SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 619 ~~~~~~l~~L~~L~l~~~~~l~~l~----~~~~~l~~L~~L~l~~c 660 (729)
...+++|..|++.+|.-.. +. ..+.-+++|++|+-...
T Consensus 112 ---l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 ---LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ---hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 1245667777777764433 22 34455677777776554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0007 Score=64.95 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=58.9
Q ss_pred ccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccC
Q 038031 523 SLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGC 602 (729)
Q Consensus 523 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 602 (729)
++++| .+..+ .....++.|++|.++=|.|+.+.+. ..|.+|++|+|+.|.+....- ...+.++|+|+.|||..|
T Consensus 25 Ncwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~pl-~rCtrLkElYLRkN~I~sldE---L~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 25 NCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAPL-QRCTRLKELYLRKNCIESLDE---LEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cccCC-CccHH-HHHHhcccceeEEeeccccccchhH-HHHHHHHHHHHHhcccccHHH---HHHHhcCchhhhHhhccC
Confidence 67775 44444 2246899999999999988888753 456999999999998865433 347899999999999998
Q ss_pred CC
Q 038031 603 DD 604 (729)
Q Consensus 603 ~~ 604 (729)
.-
T Consensus 99 PC 100 (388)
T KOG2123|consen 99 PC 100 (388)
T ss_pred Cc
Confidence 63
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.73 E-value=0.017 Score=55.53 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=37.3
Q ss_pred hccccccCCceeEecCccCCCChhhhhhcccCCcccCCceEEEEeeCCCCCCCchhh---hHHhhhccCCCCCCccEEEE
Q 038031 29 ELKLLMHLRGALEISKLENVKDIGDAKEAGLDGKKNLKELSLNWTCSTDGSSSREAE---TEMGVLDMLKPHKNLDQFCV 105 (729)
Q Consensus 29 ~l~~l~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~L~~L~L 105 (729)
++--+..+. +++++...-..+..+.....+++.++|+..+++ ..|.+..... .-...++++..||+|+..+|
T Consensus 25 el~~~d~~~-evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs----d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 25 ELEMMDELV-EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS----DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHhhccee-EEeccCCcccHHHHHHHHHHHhhhcceeEeehh----hhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 344455555 666655333333444555566667777776664 2222111111 11123445556666666666
Q ss_pred eeeC
Q 038031 106 CGYG 109 (729)
Q Consensus 106 ~~~~ 109 (729)
|.|.
T Consensus 100 SDNA 103 (388)
T COG5238 100 SDNA 103 (388)
T ss_pred cccc
Confidence 6555
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.0041 Score=57.21 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=62.0
Q ss_pred CccEEEEccCCCC-CcCCCCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCCCCCc
Q 038031 124 NLVTLKFEDCGMC-TALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVE 202 (729)
Q Consensus 124 ~L~~L~l~~~~~~-~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 202 (729)
.++.++-+++... ..+..+..++.++.|.+.+|..+.++..++.+.. +++|+.|++++|+.+++..... +.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~----~~~L~~L~lsgC~rIT~~GL~~----L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL----APSLQDLDLSGCPRITDGGLAC----LL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhccc----ccchheeeccCCCeechhHHHH----HH
Confidence 4566666665422 3445677888888888888888888877776643 8889999999888877644332 56
Q ss_pred cCCccceEeeccCcc
Q 038031 203 RFPKLRELQILRCSK 217 (729)
Q Consensus 203 ~~~~L~~L~l~~~~~ 217 (729)
.+++|+.|.+.+.+.
T Consensus 174 ~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPY 188 (221)
T ss_pred HhhhhHHHHhcCchh
Confidence 788888888887653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.52 E-value=0.053 Score=52.23 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCc
Q 038031 560 DGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNL 639 (729)
Q Consensus 560 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 639 (729)
......|+.|.+.++..+.. ..+-.+++|++|.++.|+... ...++.-. ..+|+|++|++++ +++
T Consensus 39 ~d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~-~~~l~vl~-------e~~P~l~~l~ls~-Nki 103 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRV-SGGLEVLA-------EKAPNLKVLNLSG-NKI 103 (260)
T ss_pred cccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccc-cccceehh-------hhCCceeEEeecC-Ccc
Confidence 33446788888888777653 356778999999999995321 23333322 1459999999999 777
Q ss_pred cccc--ccCCCCCCccEEeecCCCCCCCCCC---C--CCCCccceeeccCCc
Q 038031 640 ERLS--SSIVDLQNLTELHLWDCPKLKYFPE---K--GLPSSLLQLWISGCP 684 (729)
Q Consensus 640 ~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~---~--~~~~~L~~L~l~~n~ 684 (729)
+.+. .....+.+|..|++.+|.-.. +.. . .++++|++|+-.+..
T Consensus 104 ~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 104 KDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 7654 556778889999999985333 322 1 127888888776653
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.27 E-value=0.38 Score=42.07 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
|.++++|+.+.+.. .+..+. .....+.+|+.+.+.++ ... +. ...|.+++.++.+.+.+ . +..++...
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~---~~~F~~~~~l~~i~~~~-~----~~~i~~~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IG---DNAFSNCKSLESITFPN-N----LKSIGDNA 76 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E----TTTTTT-TT-EEEEETS-T----T-EE-TTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cc---eeeeecccccccccccc-c----cccccccc
Confidence 45666777777663 345555 33444457777777664 222 22 34667777777777765 2 44444322
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCC
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPE 668 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~ 668 (729)
|...++|+.+++.. .+..++ ..+.++ +|+.+.+.+ .++.++.
T Consensus 77 ------F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 77 ------FSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEE 119 (129)
T ss_dssp ------TTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS---
T ss_pred ------ccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECC
Confidence 23467777777765 255665 556666 777777654 3444544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.026 Score=52.08 Aligned_cols=85 Identities=27% Similarity=0.509 Sum_probs=54.3
Q ss_pred CCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc
Q 038031 564 TNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS 643 (729)
Q Consensus 564 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 643 (729)
..++.+|-+++.+....+. .+..++.++.|.+.+|.- +....-+ +.. ...++|+.|+|++|+.|++-.
T Consensus 101 ~~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~---~dD~~L~--~l~---~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKY---FDDWCLE--RLG---GLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ceEEEEecCCchHHHHHHH----HHhccchhhhheeccccc---hhhHHHH--Hhc---ccccchheeeccCCCeechhH
Confidence 4678888888888877654 667777777777777652 2221110 000 135778888888877777754
Q ss_pred -ccCCCCCCccEEeecCC
Q 038031 644 -SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 644 -~~~~~l~~L~~L~l~~c 660 (729)
..+..+++|+.|.+.+-
T Consensus 169 L~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHHhhhhHHHHhcCc
Confidence 45566777777777663
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.58 E-value=0.64 Score=40.61 Aligned_cols=105 Identities=13% Similarity=0.238 Sum_probs=53.3
Q ss_pred ccccccC-cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 529 RLEALPK-GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 529 ~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
.++.++. .|.++++|+.+.+.++ +..+. .....+++++.+.+.++ .... . ...|..+++|+.+.+..+
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i-~---~~~F~~~~~l~~i~~~~~---- 91 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSI-G---DNAFSNCTNLKNIDIPSN---- 91 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-----TTTTTT-TTECEEEETTT----
T ss_pred CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-cccc-c---cccccccccccccccCcc----
Confidence 3445543 3788889999999875 67776 44555678999999763 2221 1 347788999999999764
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCcc
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLT 653 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~ 653 (729)
+..++... +... +++.+.+.. .+..++ ..+.++++|+
T Consensus 92 -~~~i~~~~------f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 92 -ITEIGSSS------FSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp --BEEHTTT------TTT--T--EEE-TT--B-SS----GGG------
T ss_pred -ccEEchhh------hcCC-CceEEEECC--CccEECCccccccccCC
Confidence 44444432 2344 888888775 455555 5667676664
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.25 E-value=0.15 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=7.2
Q ss_pred ccceEEEccCCCCCC
Q 038031 542 CLQELTIIGGALPSL 556 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l 556 (729)
+|++|++++|++.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 566666666655443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.96 E-value=0.14 Score=29.03 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=7.2
Q ss_pred cceEEcccCCCcccccc
Q 038031 628 LTSLSISRFPNLERLSS 644 (729)
Q Consensus 628 L~~L~l~~~~~l~~l~~ 644 (729)
|++|++++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 444444443 4444443
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.87 E-value=0.27 Score=47.68 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=10.3
Q ss_pred CCCccceEEEccCCCC
Q 038031 539 NLSCLQELTIIGGALP 554 (729)
Q Consensus 539 ~l~~L~~L~l~~~~i~ 554 (729)
.+..++++++|+|.|.
T Consensus 28 ~~d~~~evdLSGNtig 43 (388)
T COG5238 28 MMDELVEVDLSGNTIG 43 (388)
T ss_pred hhcceeEEeccCCccc
Confidence 3566777777777443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=73.71 E-value=2.6 Score=24.83 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=12.7
Q ss_pred CCccceEEEccCCCCCCC
Q 038031 540 LSCLQELTIIGGALPSLE 557 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~ 557 (729)
+++|+.|++++|+|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777777766
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=73.71 E-value=2.6 Score=24.83 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=12.7
Q ss_pred CCccceEEEccCCCCCCC
Q 038031 540 LSCLQELTIIGGALPSLE 557 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~ 557 (729)
+++|+.|++++|+|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777777766
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.99 E-value=2.3 Score=25.09 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=7.2
Q ss_pred ccceeeccCCchhHH
Q 038031 674 SLLQLWISGCPLIEE 688 (729)
Q Consensus 674 ~L~~L~l~~n~~l~~ 688 (729)
+|+.|++++|+.+++
T Consensus 3 ~L~~L~l~~C~~itD 17 (26)
T smart00367 3 NLRELDLSGCTNITD 17 (26)
T ss_pred CCCEeCCCCCCCcCH
Confidence 444555555544443
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.53 E-value=2 Score=46.16 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCCCccceEEEccCCCCCCC---CCCCCCCCcceEEecCc--hhhhhhhhhccCCCCCCCCcceeeeccCCC
Q 038031 538 HNLSCLQELTIIGGALPSLE---EEDGLPTNLQSLDIRGN--MEICKSLIERGRGFHRFSSLRHLTIGGCDD 604 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~L~~~--~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~ 604 (729)
.+.+.+..+.+++|++..+. ......|+|+.|+|++| .+..... .+.++ ...|++|.+.+|..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e---l~K~k-~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE---LDKLK-GLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh---hhhhc-CCCHHHeeecCCcc
Confidence 45677778888888777666 33445588888888887 2222111 11222 33577788888774
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.55 E-value=6.6 Score=22.51 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=9.6
Q ss_pred CCcceEEecCchhhhhh
Q 038031 564 TNLQSLDIRGNMEICKS 580 (729)
Q Consensus 564 ~~L~~L~L~~~~~~~~~ 580 (729)
++|++|+|++|.+....
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 56777777777765543
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.74 E-value=7.2 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=10.2
Q ss_pred CccceEEEccCCCCCCC
Q 038031 541 SCLQELTIIGGALPSLE 557 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~ 557 (729)
.+|+.|++++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666655554
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.54 E-value=8.2 Score=22.91 Aligned_cols=17 Identities=35% Similarity=0.598 Sum_probs=7.6
Q ss_pred CccEEeecCCCCCCCCCC
Q 038031 651 NLTELHLWDCPKLKYFPE 668 (729)
Q Consensus 651 ~L~~L~l~~c~~l~~l~~ 668 (729)
+|+.|++++ |+++++|.
T Consensus 3 ~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN-NQLTSLPE 19 (26)
T ss_pred ccceeecCC-CccccCcc
Confidence 344444444 34444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=53.08 E-value=0.63 Score=44.11 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=16.9
Q ss_pred CCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCc
Q 038031 538 HNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGN 574 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~ 574 (729)
..+...+.||++.|++.++..-......|..||++.|
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn 75 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN 75 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh
Confidence 3445555555555544444332333344444444443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.61 E-value=33 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=9.4
Q ss_pred CCcceEEecCchhhh
Q 038031 564 TNLQSLDIRGNMEIC 578 (729)
Q Consensus 564 ~~L~~L~L~~~~~~~ 578 (729)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456666666666654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.14 E-value=25 Score=38.21 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccc
Q 038031 563 PTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERL 642 (729)
Q Consensus 563 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 642 (729)
.+.+..+.|++|++...... .......|+|..|+|++|... +..-++... .....|++|-+.+++.-+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~--sslsq~apklk~L~LS~N~~~--~~~~~el~K------~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL--SSLSQIAPKLKTLDLSHNHSK--ISSESELDK------LKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred Ccceeeeecccchhhchhhh--hHHHHhcchhheeecccchhh--hcchhhhhh------hcCCCHHHeeecCCccccch
Confidence 37778888888887644322 334466788999999998311 322222110 13467888888887665555
Q ss_pred c---ccC----CCCCCccEEe
Q 038031 643 S---SSI----VDLQNLTELH 656 (729)
Q Consensus 643 ~---~~~----~~l~~L~~L~ 656 (729)
. ..+ ..||+|..||
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 3 222 2578887776
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=24.39 E-value=2.6 Score=40.18 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCc
Q 038031 560 DGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNL 639 (729)
Q Consensus 560 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 639 (729)
+..+...+.||++.|...... ..|+.++.|..|+++.|. +..+|...+ ....+..+++.+ +.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq----~~~~~~d~~-------q~~e~~~~~~~~-n~~ 100 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQ----IKFLPKDAK-------QQRETVNAASHK-NNH 100 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhh----HhhChhhHH-------HHHHHHHHHhhc-cch
Confidence 344477888888888776553 255667788888888877 777777553 345555666655 778
Q ss_pred ccccccCCCCCCccEEeecCCC
Q 038031 640 ERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 640 ~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
+..|.++...|.+++++..+++
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhCCccccccCCcchhhhccCc
Confidence 8888888888888888887755
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.44 E-value=2.9 Score=45.69 Aligned_cols=140 Identities=22% Similarity=0.189 Sum_probs=67.0
Q ss_pred CccceEEEccCCCCCCC-----CCCCCCCCcceEEecCchhhhhhhhhccCCC----CCCCCcceeeeccCCCccccccc
Q 038031 541 SCLQELTIIGGALPSLE-----EEDGLPTNLQSLDIRGNMEICKSLIERGRGF----HRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~-----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l----~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
..+++|.+..|.+.... ........++.++++.|.+...........+ ....++++|++++|.. .
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~----t-- 217 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGV----T-- 217 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc----C--
Confidence 45555666656444332 1222256667777776665322211111122 2355677777777652 2
Q ss_pred cccccccCCccCCCCC-cceEEcccCCCcccc-----cccCCCC-CCccEEeecCCCCCCCCCCC------CCCCcccee
Q 038031 612 PLEDKRLGTALPLPAS-LTSLSISRFPNLERL-----SSSIVDL-QNLTELHLWDCPKLKYFPEK------GLPSSLLQL 678 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l-----~~~~~~l-~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L 678 (729)
+.........+...++ +..+++.+ +.+... .+.+..+ +.+++++++.| .++.-... ...+.++++
T Consensus 218 ~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l 295 (478)
T KOG4308|consen 218 SSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEEL 295 (478)
T ss_pred hHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHh
Confidence 1111000111122233 55566666 334322 2344444 66778888875 34333221 114577888
Q ss_pred eccCCchhHH
Q 038031 679 WISGCPLIEE 688 (729)
Q Consensus 679 ~l~~n~~l~~ 688 (729)
.+.+|+..-.
T Consensus 296 ~l~~n~l~~~ 305 (478)
T KOG4308|consen 296 SLSNNPLTDY 305 (478)
T ss_pred hcccCccccH
Confidence 8887775443
No 87
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.30 E-value=1.3e+02 Score=20.36 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=15.5
Q ss_pred CCccEEeecCCCCCCCCCCCCCCCccceeecc
Q 038031 650 QNLTELHLWDCPKLKYFPEKGLPSSLLQLWIS 681 (729)
Q Consensus 650 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 681 (729)
+++++|.+.+ .--..+....++.++++|.+.
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEee
Confidence 4555666633 222333344456666666654
Done!