Query 038031
Match_columns 729
No_of_seqs 265 out of 3263
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.2E-42 2.5E-46 397.9 24.2 536 94-707 174-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-38 3.9E-43 371.0 23.1 91 587-687 627-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6E-35 2.1E-39 336.5 31.1 148 529-688 468-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-33 2.1E-37 319.8 32.7 541 34-684 25-595 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.7E-32 2E-36 307.4 37.3 508 98-687 33-561 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.8E-31 2.3E-35 298.6 39.7 291 358-687 262-559 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-31 1.9E-35 299.3 28.7 503 34-664 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6.3E-30 2.2E-34 290.6 35.6 518 101-714 15-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-29 7E-34 296.1 38.6 506 98-687 24-561 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.6E-33 290.1 40.5 495 102-685 8-538 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.3E-28 4.3E-33 277.9 34.3 477 98-686 28-531 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-28 6.1E-33 275.3 30.5 61 377-440 277-344 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2E-27 6.8E-32 268.1 29.0 484 34-667 28-535 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-26 4.6E-31 259.9 35.0 448 123-685 26-509 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-27 1.2E-31 262.7 28.8 135 534-685 341-480 (520)
16 4eco_A Uncharacterized protein 99.9 5E-27 1.7E-31 266.7 23.7 130 538-685 454-599 (636)
17 4g8a_A TOLL-like receptor 4; l 99.9 1E-25 3.6E-30 257.5 34.9 501 98-687 52-581 (635)
18 4ecn_A Leucine-rich repeat pro 99.9 3.9E-26 1.3E-30 263.6 30.2 365 242-685 442-839 (876)
19 4eco_A Uncharacterized protein 99.9 1.2E-26 4.1E-31 263.6 22.8 381 201-687 202-633 (636)
20 4ecn_A Leucine-rich repeat pro 99.9 2E-26 7E-31 265.9 24.7 434 123-668 323-844 (876)
21 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-26 1.5E-30 253.8 23.7 440 101-661 3-479 (520)
22 1jl5_A Outer protein YOPM; leu 99.9 7.5E-27 2.6E-31 253.5 16.3 280 320-685 149-428 (454)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-24 4.2E-29 244.3 30.6 135 534-685 370-509 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-24 1.3E-28 240.1 28.6 426 122-661 30-508 (562)
25 4g8a_A TOLL-like receptor 4; l 99.9 2E-24 6.7E-29 246.9 25.0 113 534-661 462-578 (635)
26 1jl5_A Outer protein YOPM; leu 99.9 4.5E-24 1.5E-28 231.7 24.2 301 98-578 71-371 (454)
27 3v47_A TOLL-like receptor 5B a 99.9 6.5E-23 2.2E-27 224.2 25.4 130 540-685 274-407 (455)
28 3o6n_A APL1; leucine-rich repe 99.9 6.6E-23 2.3E-27 219.2 23.2 310 294-688 43-354 (390)
29 1o6v_A Internalin A; bacterial 99.9 2E-22 6.8E-27 220.7 27.4 99 98-215 46-144 (466)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-22 7.3E-27 218.6 26.3 161 357-576 191-351 (457)
31 4fmz_A Internalin; leucine ric 99.9 8.2E-23 2.8E-27 214.9 22.1 280 357-685 66-345 (347)
32 3v47_A TOLL-like receptor 5B a 99.9 1.8E-22 6.3E-27 220.6 23.9 119 533-667 291-412 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-22 1.8E-26 215.5 22.7 357 141-669 37-393 (457)
34 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.2E-26 213.6 26.0 126 537-684 261-386 (466)
35 3oja_B Anopheles plasmodium-re 99.9 6.4E-22 2.2E-26 223.4 22.7 310 294-688 49-360 (597)
36 4fmz_A Internalin; leucine ric 99.9 1.7E-21 5.7E-26 204.9 22.2 280 294-661 64-344 (347)
37 2id5_A Lingo-1, leucine rich r 99.9 4.8E-21 1.6E-25 210.6 23.1 124 523-661 206-331 (477)
38 2id5_A Lingo-1, leucine rich r 99.9 6.7E-21 2.3E-25 209.4 22.6 293 324-685 32-332 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 9.6E-21 3.3E-25 202.4 21.1 280 294-661 67-350 (390)
40 3oja_B Anopheles plasmodium-re 99.8 4.8E-20 1.7E-24 208.0 20.5 280 294-661 73-356 (597)
41 1xku_A Decorin; proteoglycan, 99.8 2E-19 6.7E-24 187.5 23.5 287 358-711 32-328 (330)
42 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-19 8.9E-24 186.7 21.7 264 358-686 34-307 (332)
43 4fcg_A Uncharacterized protein 99.8 2E-19 7E-24 186.6 19.5 236 356-666 80-316 (328)
44 2ft3_A Biglycan; proteoglycan, 99.8 4.4E-19 1.5E-23 184.9 20.7 104 324-440 54-157 (332)
45 3ogk_B Coronatine-insensitive 99.8 1.6E-21 5.4E-26 220.8 0.9 61 540-603 462-524 (592)
46 1xku_A Decorin; proteoglycan, 99.8 1.9E-18 6.6E-23 180.0 23.5 262 357-683 52-329 (330)
47 3g06_A SSPH2 (leucine-rich rep 99.8 6.7E-18 2.3E-22 188.7 24.7 256 357-685 40-296 (622)
48 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-19 1.4E-23 183.2 13.5 251 357-688 50-306 (313)
49 3ogk_B Coronatine-insensitive 99.8 6.9E-20 2.4E-24 207.3 6.4 113 540-666 402-528 (592)
50 4fcg_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 177.6 18.5 231 379-683 79-311 (328)
51 2p1m_B Transport inhibitor res 99.8 2.8E-21 9.6E-26 218.9 -5.7 109 538-659 429-540 (594)
52 3g06_A SSPH2 (leucine-rich rep 99.8 4E-17 1.4E-21 182.4 25.4 256 325-662 41-296 (622)
53 3zyi_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 178.6 20.7 223 357-661 75-301 (452)
54 2p1m_B Transport inhibitor res 99.7 1.4E-20 4.7E-25 213.2 -6.3 63 539-604 454-518 (594)
55 3zyj_A Leucine-rich repeat-con 99.7 6.1E-17 2.1E-21 175.6 22.2 223 357-661 64-290 (440)
56 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 175.2 15.4 253 357-685 52-313 (353)
57 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-18 4.2E-23 180.1 5.3 241 356-688 33-277 (317)
58 3zyj_A Leucine-rich repeat-con 99.7 6.7E-17 2.3E-21 175.3 19.2 222 323-603 63-290 (440)
59 1z7x_W Ribonuclease inhibitor; 99.7 6.4E-20 2.2E-24 200.8 -4.8 337 294-665 26-412 (461)
60 2z80_A TOLL-like receptor 2, v 99.7 4.4E-17 1.5E-21 171.3 17.1 262 385-713 35-312 (353)
61 2z66_A Variable lymphocyte rec 99.7 8.8E-17 3E-21 165.5 18.7 135 536-685 121-260 (306)
62 3zyi_A Leucine-rich repeat-con 99.7 3.3E-16 1.1E-20 170.5 23.3 238 384-685 57-302 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.6E-23 178.7 4.7 219 375-686 28-250 (317)
64 1z7x_W Ribonuclease inhibitor; 99.7 4.2E-20 1.4E-24 202.2 -10.6 379 122-603 2-409 (461)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-16 4.4E-21 162.4 14.8 52 384-439 14-65 (285)
66 1ogq_A PGIP-2, polygalacturona 99.7 5.2E-17 1.8E-21 167.4 11.8 224 357-664 76-305 (313)
67 3oja_A Leucine-rich immune mol 99.7 3.5E-17 1.2E-21 179.3 10.6 243 349-658 26-270 (487)
68 2xwt_C Thyrotropin receptor; s 99.7 3.4E-16 1.1E-20 154.7 16.7 174 487-686 56-239 (239)
69 2z66_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 160.7 17.2 114 534-661 143-259 (306)
70 4ay9_X Follicle-stimulating ho 99.7 1.8E-15 6.1E-20 158.6 21.4 229 370-659 21-255 (350)
71 2xwt_C Thyrotropin receptor; s 99.7 1.2E-15 4.1E-20 150.7 17.1 100 545-661 134-237 (239)
72 1ozn_A Reticulon 4 receptor; N 99.6 2.5E-15 8.4E-20 152.8 17.4 218 407-686 14-238 (285)
73 1p9a_G Platelet glycoprotein I 99.6 4.6E-15 1.6E-19 150.8 19.2 201 376-661 5-206 (290)
74 1p9a_G Platelet glycoprotein I 99.6 4E-15 1.4E-19 151.3 18.0 199 427-685 7-207 (290)
75 1wwl_A Monocyte differentiatio 99.6 5.6E-17 1.9E-21 167.2 4.2 56 625-684 252-307 (312)
76 3oja_A Leucine-rich immune mol 99.6 1.5E-15 5E-20 166.3 13.3 234 378-681 31-270 (487)
77 2o6q_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 146.5 18.8 133 537-685 81-217 (270)
78 4ay9_X Follicle-stimulating ho 99.6 3E-14 1E-18 149.2 21.2 240 384-684 12-257 (350)
79 2o6q_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 142.9 19.7 198 381-661 16-216 (270)
80 1wwl_A Monocyte differentiatio 99.6 4.7E-16 1.6E-20 160.3 5.2 242 357-660 43-306 (312)
81 2z62_A TOLL-like receptor 4, v 99.6 1.5E-14 5.1E-19 146.3 16.0 108 537-660 120-234 (276)
82 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.8E-18 139.9 16.5 136 535-685 94-236 (276)
83 3rfs_A Internalin B, repeat mo 99.5 7.3E-14 2.5E-18 140.7 14.2 56 379-439 39-94 (272)
84 1h6u_A Internalin H; cell adhe 99.5 8.6E-14 2.9E-18 142.8 14.8 194 357-644 41-234 (308)
85 1h6u_A Internalin H; cell adhe 99.5 1.2E-13 4.2E-18 141.6 15.0 198 377-668 37-234 (308)
86 3m19_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 133.8 16.7 137 535-687 53-193 (251)
87 4glp_A Monocyte differentiatio 99.5 3.5E-13 1.2E-17 138.6 15.3 82 357-441 91-180 (310)
88 3rfs_A Internalin B, repeat mo 99.5 7.7E-13 2.6E-17 133.2 15.3 172 453-660 41-215 (272)
89 4glp_A Monocyte differentiatio 99.4 4.6E-13 1.6E-17 137.7 12.4 138 535-685 163-306 (310)
90 2ast_B S-phase kinase-associat 99.4 2.9E-14 9.9E-19 148.7 1.5 243 357-684 47-304 (336)
91 3m19_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 126.5 16.3 111 536-661 78-190 (251)
92 4ezg_A Putative uncharacterize 99.4 1.6E-12 5.5E-17 123.9 11.9 136 530-684 56-192 (197)
93 3goz_A Leucine-rich repeat-con 99.4 5.5E-14 1.9E-18 148.0 0.7 114 542-661 168-295 (362)
94 2ca6_A RAN GTPase-activating p 99.4 1E-13 3.4E-18 147.6 2.2 124 536-666 182-318 (386)
95 3e6j_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 124.1 13.3 141 528-686 29-172 (229)
96 1h6t_A Internalin B; cell adhe 99.4 2E-12 6.8E-17 131.4 11.1 126 537-684 86-211 (291)
97 2v9t_B SLIT homolog 2 protein 99.4 4.9E-12 1.7E-16 122.7 13.2 140 528-685 21-164 (220)
98 2ast_B S-phase kinase-associat 99.4 6.5E-14 2.2E-18 146.0 -0.2 225 382-683 48-282 (336)
99 3cvr_A Invasion plasmid antige 99.3 7.7E-12 2.6E-16 138.0 16.1 71 382-463 60-130 (571)
100 3cvr_A Invasion plasmid antige 99.3 1E-11 3.6E-16 136.9 15.0 181 431-660 60-240 (571)
101 3goz_A Leucine-rich repeat-con 99.3 1.1E-12 3.8E-17 138.1 5.6 115 319-440 17-148 (362)
102 2ca6_A RAN GTPase-activating p 99.3 2.4E-13 8.2E-18 144.6 -1.8 92 536-637 211-314 (386)
103 1h6t_A Internalin B; cell adhe 99.3 2.9E-11 1E-15 122.7 13.2 56 379-439 44-99 (291)
104 3e6j_A Variable lymphocyte rec 99.3 4.2E-11 1.4E-15 116.9 13.7 112 534-661 57-170 (229)
105 1m9s_A Internalin B; cell inva 99.3 1.6E-11 5.5E-16 137.0 11.7 171 453-667 43-213 (605)
106 2o6s_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 114.2 14.0 148 509-685 27-177 (208)
107 2v70_A SLIT-2, SLIT homolog 2 99.2 4.2E-11 1.5E-15 116.1 12.4 139 529-685 22-165 (220)
108 2xot_A Amphoterin-induced prot 99.2 2.9E-11 1E-15 127.0 11.1 141 529-685 50-201 (361)
109 2o6s_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 114.0 12.4 139 529-685 18-160 (208)
110 1xeu_A Internalin C; cellular 99.2 4.7E-11 1.6E-15 119.2 11.8 150 482-667 39-188 (263)
111 3sb4_A Hypothetical leucine ri 99.2 6.1E-11 2.1E-15 122.9 12.1 114 322-453 23-146 (329)
112 4ezg_A Putative uncharacterize 99.2 5.4E-11 1.8E-15 113.2 10.7 151 538-714 41-193 (197)
113 2v70_A SLIT-2, SLIT homolog 2 99.2 1.3E-10 4.5E-15 112.6 13.1 110 537-661 53-164 (220)
114 1m9s_A Internalin B; cell inva 99.2 9.2E-11 3.1E-15 130.9 13.2 77 357-440 43-119 (605)
115 2ell_A Acidic leucine-rich nuc 99.2 4.9E-11 1.7E-15 110.3 8.9 112 532-660 40-157 (168)
116 2v9t_B SLIT homolog 2 protein 99.2 1.8E-10 6.2E-15 111.6 12.9 118 529-661 43-163 (220)
117 1a9n_A U2A', U2A'; complex (nu 99.1 4.6E-11 1.6E-15 111.5 6.8 134 537-688 15-155 (176)
118 1xeu_A Internalin C; cellular 99.1 1.7E-10 5.9E-15 115.1 10.8 144 510-685 41-184 (263)
119 2ell_A Acidic leucine-rich nuc 99.1 8.4E-11 2.9E-15 108.8 7.9 128 539-685 22-159 (168)
120 2xot_A Amphoterin-induced prot 99.1 1.8E-10 6.1E-15 121.0 10.6 175 433-661 21-200 (361)
121 2je0_A Acidic leucine-rich nuc 99.1 1.2E-10 4.2E-15 105.2 7.1 122 541-681 17-148 (149)
122 2je0_A Acidic leucine-rich nuc 99.1 1.2E-10 4E-15 105.3 6.1 127 508-659 15-149 (149)
123 2wfh_A SLIT homolog 2 protein 99.0 1E-09 3.4E-14 103.8 11.9 123 544-685 13-138 (193)
124 1w8a_A SLIT protein; signaling 99.0 8.4E-10 2.9E-14 104.4 11.0 104 542-660 30-136 (192)
125 2o6r_A Variable lymphocyte rec 99.0 1.9E-09 6.6E-14 100.4 12.3 124 543-684 9-135 (177)
126 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4E-14 103.4 10.3 116 529-661 21-137 (193)
127 3sb4_A Hypothetical leucine ri 99.0 5.4E-09 1.8E-13 108.1 15.3 102 539-657 224-328 (329)
128 1w8a_A SLIT protein; signaling 99.0 2.3E-09 7.9E-14 101.3 10.4 125 544-685 11-138 (192)
129 1a9n_A U2A', U2A'; complex (nu 98.9 5.3E-10 1.8E-14 104.2 5.0 105 540-661 41-151 (176)
130 4fdw_A Leucine rich hypothetic 98.9 4E-08 1.4E-12 104.0 19.8 141 295-460 112-255 (401)
131 4fdw_A Leucine rich hypothetic 98.9 7.3E-08 2.5E-12 101.9 21.7 125 541-684 248-381 (401)
132 2o6r_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 97.1 11.3 116 529-661 18-135 (177)
133 4b8c_D Glucose-repressible alc 98.8 2.5E-09 8.4E-14 122.5 6.0 117 529-662 212-328 (727)
134 1dce_A Protein (RAB geranylger 98.8 1E-08 3.5E-13 113.6 9.0 118 542-679 442-566 (567)
135 2r9u_A Variable lymphocyte rec 98.8 2.3E-08 7.7E-13 92.7 9.8 105 544-666 15-120 (174)
136 3g39_A Variable lymphocyte rec 98.8 2.3E-08 8E-13 92.2 9.7 103 542-661 10-113 (170)
137 4b8c_D Glucose-repressible alc 98.7 2E-08 7E-13 114.9 8.4 124 544-685 204-328 (727)
138 1dce_A Protein (RAB geranylger 98.7 3.5E-08 1.2E-12 109.4 8.8 110 529-657 452-567 (567)
139 1ds9_A Outer arm dynein; leuci 98.6 2.8E-10 9.6E-15 108.3 -9.7 115 528-661 35-151 (198)
140 4fs7_A Uncharacterized protein 98.5 3.9E-06 1.3E-10 88.9 19.4 300 294-683 69-376 (394)
141 3g39_A Variable lymphocyte rec 98.5 3.4E-07 1.2E-11 84.3 9.6 102 565-685 10-114 (170)
142 4fs7_A Uncharacterized protein 98.5 6.4E-06 2.2E-10 87.2 19.6 146 537-711 226-375 (394)
143 2r9u_A Variable lymphocyte rec 98.5 5.1E-07 1.7E-11 83.5 9.6 101 566-685 14-117 (174)
144 1ds9_A Outer arm dynein; leuci 98.3 5.9E-09 2E-13 99.1 -6.9 126 542-687 24-154 (198)
145 2ifg_A High affinity nerve gro 98.2 3E-06 1E-10 88.1 9.5 96 529-641 20-117 (347)
146 3e4g_A ATP synthase subunit S, 98.2 3.3E-06 1.1E-10 76.7 7.7 90 296-396 61-154 (176)
147 4gt6_A Cell surface protein; l 98.2 7E-05 2.4E-09 79.1 19.3 286 358-685 65-369 (394)
148 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 79.8 3.6 88 357-445 61-154 (176)
149 2ifg_A High affinity nerve gro 98.1 4.1E-06 1.4E-10 87.0 8.1 55 523-577 37-93 (347)
150 4gt6_A Cell surface protein; l 98.1 0.00017 5.7E-09 76.2 20.3 126 536-682 260-387 (394)
151 4h09_A Hypothetical leucine ri 98.0 0.00032 1.1E-08 73.6 20.7 113 537-669 236-350 (379)
152 4h09_A Hypothetical leucine ri 98.0 0.00086 2.9E-08 70.3 23.7 128 536-683 212-343 (379)
153 3un9_A NLR family member X1; l 97.9 3.4E-07 1.2E-11 95.7 -5.1 11 487-497 73-83 (372)
154 2ra8_A Uncharacterized protein 97.8 1.8E-05 6.1E-10 82.0 6.5 64 373-439 164-228 (362)
155 3un9_A NLR family member X1; l 97.8 3.1E-07 1.1E-11 96.1 -7.4 12 380-391 71-82 (372)
156 2ra8_A Uncharacterized protein 97.7 5E-05 1.7E-09 78.6 6.8 138 537-684 168-318 (362)
157 1io0_A Tropomodulin; LRR prote 97.4 2.6E-05 8.8E-10 72.6 0.8 67 537-603 32-104 (185)
158 1io0_A Tropomodulin; LRR prote 97.2 5.8E-05 2E-09 70.2 -0.2 70 535-604 59-135 (185)
159 3rw6_A Nuclear RNA export fact 96.7 0.00034 1.2E-08 68.5 1.1 62 538-603 167-231 (267)
160 3rw6_A Nuclear RNA export fact 96.4 0.0016 5.3E-08 63.8 3.4 81 355-437 168-258 (267)
161 3rfe_A Platelet glycoprotein I 94.3 0.064 2.2E-06 46.0 5.8 36 625-661 30-66 (130)
162 3rfe_A Platelet glycoprotein I 94.2 0.053 1.8E-06 46.5 5.1 51 630-684 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 92.6 0.02 6.9E-07 52.8 -0.2 66 538-603 38-109 (197)
164 1pgv_A TMD-1, tropomodulin TMD 92.3 0.012 4.3E-07 54.2 -2.1 68 535-602 64-136 (197)
165 2lz0_A Uncharacterized protein 25.7 63 0.0022 25.5 3.8 39 620-660 14-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.2e-42 Score=397.85 Aligned_cols=536 Identities=17% Similarity=0.096 Sum_probs=268.6
Q ss_pred CCCCCCccEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCCCCCCCCCCCeEEEcCCCCceEcCccccCCCCCC
Q 038031 94 LKPHKNLDQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPI 173 (729)
Q Consensus 94 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 173 (729)
+..+++|+.|++++|........ ..+++|++|++++|...+.+|.++.+++|++|++++|.....++..+ .
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l------~ 244 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI------S 244 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT------T
T ss_pred hccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH------h
Confidence 44455666666665543332211 34566666666666544445556666666666666654332333222 1
Q ss_pred CCCCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccccCCCC----CCCccEEEEEccC---CcccccCC
Q 038031 174 PFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLPEH----LPALQMLAIYKCE---KLSISITS 246 (729)
Q Consensus 174 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~~L~~L~l~~~~---~l~~~~~~ 246 (729)
.+++|++|++.++.- ....+ ...+++|++|++++|. +++.+|.. +++|+.|++++|. .++..+..
T Consensus 245 ~l~~L~~L~Ls~n~l-~~~~~------~~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 245 TCTELKLLNISSNQF-VGPIP------PLPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp TCSSCCEEECCSSCC-EESCC------CCCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cCCCCCEEECCCCcc-cCccC------ccccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 256666666665532 11111 1245666666666553 43344432 2566666666654 23334555
Q ss_pred CCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCC-C
Q 038031 247 LPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDIC-S 325 (729)
Q Consensus 247 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~-~ 325 (729)
+++|++|++++|......+.. ....+++|+.|++.++.....++. .+..++ +
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~-----------------------~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~~ 369 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMD-----------------------TLLKMRGLKVLDLSFNEFSGELPE----SLTNLSAS 369 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHH-----------------------HHTTCTTCCEEECCSSEEEECCCT----THHHHTTT
T ss_pred CCCccEEECCCCcccCcCCHH-----------------------HHhcCCCCCEEeCcCCccCccccH----HHHhhhcC
Confidence 666666666666543111100 001344555555554432112222 223333 5
Q ss_pred ccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcc-cCCC-CCCc
Q 038031 326 LKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLV-SFPE-VALP 403 (729)
Q Consensus 326 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~ 403 (729)
|+.|+++++.-...++.... . ..+++|++|++++|...+.+|..+..+++|++|++++| .++ .+|. ...+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~-----~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l 441 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLC-----Q--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSL 441 (768)
T ss_dssp CSEEECCSSEEEEECCTTTT-----C--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred CcEEEccCCCcCCCcChhhh-----h--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcC
Confidence 55555554432111111100 0 00144555555555544445555555555555555553 232 2221 1124
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc-CCCCCCCeEEEecCCCCcccccccCcccccccc
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV-QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRR 482 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 482 (729)
++|++|++++|.....+|..+ ..+++|++|++++|.....++.. .-.++|+.|+++++.-...+ |..+. .
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~-----~ 512 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIG-----R 512 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGG-----G
T ss_pred CCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--ChHHh-----c
Confidence 555555555555333444333 44555555555554322222211 11233555555554322222 22222 3
Q ss_pred ccccccceEEecCCCCccccccCC-CCcccccccccc------ccccccccCcccccc----------------------
Q 038031 483 YTSSLLEKLEIWDCPSLTCIFSKN-ELPATLESLEVG------NLPPSLKSLSRLEAL---------------------- 533 (729)
Q Consensus 483 l~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~~~------~~~~~l~~~~~l~~l---------------------- 533 (729)
++ +|+.|++++|.-... +|.. .-.++|+.|+++ .+|..+..+..+..+
T Consensus 513 l~--~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 513 LE--NLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp CT--TCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred CC--CCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 34 555555555322212 2211 111334444221 122222111111000
Q ss_pred -----------cCcCCCCCccceEEEccCCCC-CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeecc
Q 038031 534 -----------PKGLHNLSCLQELTIIGGALP-SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGG 601 (729)
Q Consensus 534 -----------~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 601 (729)
+..+..++.++.+++..+.+. .++...+.+++|++||+++|.+.+.++. .+..+++|+.|++++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGH 665 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCS
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcC
Confidence 000111112222222222211 1223344568899999999999987764 688999999999999
Q ss_pred CCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeecc
Q 038031 602 CDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWIS 681 (729)
Q Consensus 602 n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 681 (729)
|.. .+.+|...+ .+++|++|++++|.....+|..+..+++|++|++++|+..+.+|..+.+.++....+.
T Consensus 666 N~l---~g~ip~~l~-------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 666 NDI---SGSIPDEVG-------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp SCC---CSCCCGGGG-------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred Ccc---CCCCChHHh-------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 995 457887774 7899999999996655688999999999999999999888899998888889999999
Q ss_pred CCchhHH----hhhccCCCCcccccccceE
Q 038031 682 GCPLIEE----KCRKDGGQYWDLLTHIPCV 707 (729)
Q Consensus 682 ~n~~l~~----~~~~~~~~~~~~~~~~~~~ 707 (729)
+||.+.. .|....++.|.+++|++.+
T Consensus 736 gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 736 NNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SCTEEESTTSCCCCSCC-------------
T ss_pred CCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 9987653 4778889999999999874
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-38 Score=370.96 Aligned_cols=91 Identities=18% Similarity=0.061 Sum_probs=75.7
Q ss_pred CCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCC
Q 038031 587 GFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYF 666 (729)
Q Consensus 587 ~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 666 (729)
.+..+++|+.|++++|.. .+.+|..++ .+++|+.|++++|.....+|..++.+++|++|++++|+.-+.+
T Consensus 627 ~~~~l~~L~~LdLs~N~l---~g~ip~~l~-------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNML---SGYIPKEIG-------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCSSSBCCCEEECCSSCC---BSCCCGGGG-------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred hhhccccccEEECcCCcc---cccCCHHHh-------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 456788999999999985 557887764 7899999999996555589999999999999999997766688
Q ss_pred CCC-CCCCccceeeccCCchhH
Q 038031 667 PEK-GLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 667 ~~~-~~~~~L~~L~l~~n~~l~ 687 (729)
|.. +.+++|++|++++|+...
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEE
T ss_pred ChHHhCCCCCCEEECcCCcccc
Confidence 875 347899999999997543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6e-35 Score=336.55 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=119.3
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhh----hccCCCCCCCCcceeeeccCC
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLI----ERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~----~~~~~l~~l~~L~~L~ls~n~ 603 (729)
.+..+|..+..+++|++|++++|++..++ .....+++|++|++++|.+...... .....+..+++|++|++++|.
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 34566778899999999999999999887 4466779999999999988764221 002247889999999999998
Q ss_pred CccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCC---CCCccceee
Q 038031 604 DDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKG---LPSSLLQLW 679 (729)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~ 679 (729)
+..+|... +..+++|+.|++++ +.++.+| ..+..+++|++|++++| .++.++... .+++|+.++
T Consensus 548 ----l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 548 ----FDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp ----CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEE
T ss_pred ----CCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEE
Confidence 77887642 35789999999999 7888998 45789999999999994 788887653 368999999
Q ss_pred ccCCchhHH
Q 038031 680 ISGCPLIEE 688 (729)
Q Consensus 680 l~~n~~l~~ 688 (729)
+++||...+
T Consensus 616 l~~N~~~c~ 624 (680)
T 1ziw_A 616 MRFNPFDCT 624 (680)
T ss_dssp CTTCCCCBC
T ss_pred ccCCCcccC
Confidence 999997654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-33 Score=319.78 Aligned_cols=541 Identities=14% Similarity=0.110 Sum_probs=321.0
Q ss_pred ccCCceeEecCccCCCChhhhhhcccCCcccCCceEEEEeeCCCCCCCchhhhHHhhhccCCCCCCccEEEEeeeCCCCC
Q 038031 34 MHLRGALEISKLENVKDIGDAKEAGLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLDQFCVCGYGGTKF 113 (729)
Q Consensus 34 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 113 (729)
++++ .|++++.. +.......|..+++|++|++++ +.. ... ....+..+++|++|++++|.+..+
T Consensus 25 ~~l~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~--n~l------~~~---~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 25 TNIT-VLNLTHNQ----LRRLPAANFTRYSQLTSLDVGF--NTI------SKL---EPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp TTCS-EEECCSSC----CCCCCGGGGGGGTTCSEEECCS--SCC------CCC---CTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCc-EEECCCCC----CCCcCHHHHhCCCcCcEEECCC--Ccc------Ccc---CHHHHhcccCcCEEECCCCccCcc
Confidence 4566 66665421 2223334466667777777764 110 000 111233456677777776666666
Q ss_pred Ccc-cCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeeccccccc
Q 038031 114 PTW-LGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWE 190 (729)
Q Consensus 114 ~~~-~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 190 (729)
|.. + ..+++|++|++++|. +..++ .++++++|++|++++|.. ..++...+ ..+++|++|++.++. ++
T Consensus 89 ~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-----~~l~~L~~L~L~~n~-l~ 158 (680)
T 1ziw_A 89 SDKTF--AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQ-----VQLENLQELLLSNNK-IQ 158 (680)
T ss_dssp CTTTT--TTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSS-----SCCTTCCEEECCSSC-CC
T ss_pred Chhhh--ccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcc-cccCchhh-----cccccCCEEEccCCc-cc
Confidence 542 3 346677777777665 33343 366677777777766632 22221111 125666666665542 22
Q ss_pred ccccCCCCCCCccCCccceEeeccCccccccCCCCCCCccEEEEEccCCcccccCCCCcccEEEEeCCCCceeecccccc
Q 038031 191 DWIPHGSSQGVERFPKLRELQILRCSKLQGTLPEHLPALQMLAIYKCEKLSISITSLPALCKLVIGGCKKVVLRSATDHL 270 (729)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 270 (729)
....... ....+++|++|+++++ .+++..|. .+..+++|+.+.+.++.........
T Consensus 159 ~~~~~~~--~~~~~~~L~~L~L~~n-~l~~~~~~------------------~~~~l~~L~~L~l~~~~l~~~~~~~--- 214 (680)
T 1ziw_A 159 ALKSEEL--DIFANSSLKKLELSSN-QIKEFSPG------------------CFHAIGRLFGLFLNNVQLGPSLTEK--- 214 (680)
T ss_dssp CBCHHHH--GGGTTCEESEEECTTC-CCCCBCTT------------------GGGGSSEECEEECTTCCCHHHHHHH---
T ss_pred ccCHHHh--hccccccccEEECCCC-cccccChh------------------hhhhhhhhhhhhccccccChhhHHH---
Confidence 1111000 0123355666666655 23322222 2333445555555444322100000
Q ss_pred CcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCC--CccEEEeccCCCccccchhhhHHH
Q 038031 271 GLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDIC--SLKRLTIRRCPKIQSLVVEEEKDQ 348 (729)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~ 348 (729)
+... ...+.|+.|.+.++.. ..+.. ..+..++ +|+.|++++|. ++.+.+. .
T Consensus 215 ----------------~~~~--l~~~~L~~L~L~~n~l-~~~~~---~~~~~l~~~~L~~L~Ls~n~-l~~~~~~----~ 267 (680)
T 1ziw_A 215 ----------------LCLE--LANTSIRNLSLSNSQL-STTSN---TTFLGLKWTNLTMLDLSYNN-LNVVGND----S 267 (680)
T ss_dssp ----------------HHHH--HTTSCCCEEECTTSCC-CEECT---TTTGGGGGSCCCEEECTTSC-CCEECTT----T
T ss_pred ----------------HHHH--hhhccccEEEccCCcc-cccCh---hHhhccCcCCCCEEECCCCC-cCccCcc----c
Confidence 0000 0124556666555432 11111 2334443 48888888765 4443322 1
Q ss_pred HhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcc-----cCC-----CCCCcCCcceEEEecCCCCC
Q 038031 349 QQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLV-----SFP-----EVALPSKLKKIQIRHCDALK 418 (729)
Q Consensus 349 ~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~-----~~~~~~~L~~L~l~~~~~l~ 418 (729)
+..+ ++|++|++++|...+..+..+..+++|++|+++++..-. .+| ....+++|++|++++|. +.
T Consensus 268 ~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~ 342 (680)
T 1ziw_A 268 FAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IP 342 (680)
T ss_dssp TTTC----TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BC
T ss_pred ccCc----ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cC
Confidence 2222 788888888887666666778888888888888642111 222 12337888888888887 55
Q ss_pred ccccccccCCCCCccEEEeecCCC-cccccccCC----CCCCCeEEEecCCCCcccccccCccccccccccccccceEEe
Q 038031 419 SLPEAWMCDTNSSLEILNIQYCCS-LRYIVEVQL----PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEI 493 (729)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~----~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l 493 (729)
.++...+ ..+++|++|++++|.. +..++...+ .++|+.|+++++. ++.+ ....+. .++ +|+.|++
T Consensus 343 ~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~--~~~~~~----~l~--~L~~L~L 412 (680)
T 1ziw_A 343 GIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKI--ESDAFS----WLG--HLEVLDL 412 (680)
T ss_dssp CCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEE--CTTTTT----TCT--TCCEEEC
T ss_pred CCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeE--Chhhhh----CCC--CCCEEeC
Confidence 5555444 7788888998887642 223332222 1468888888775 5544 334443 566 8899999
Q ss_pred cCCCCccccccCCCC--ccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCC---CCCCCCCCCCcce
Q 038031 494 WDCPSLTCIFSKNEL--PATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPS---LEEEDGLPTNLQS 568 (729)
Q Consensus 494 ~~c~~l~~~~~~~~~--~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~---l~~~~~~~~~L~~ 568 (729)
+++.--.. ++...+ .++|++| ++.++.-....+..+..+++|++|++++|.+.. ++.....+++|++
T Consensus 413 ~~N~l~~~-~~~~~~~~l~~L~~L-------~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 413 GLNEIGQE-LTGQEWRGLENIFEI-------YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CSSCCEEE-CCSGGGTTCTTCCEE-------ECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCcCccc-cCcccccCcccccEE-------ecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 88543222 333222 2568888 676665433445568889999999999998754 3456677799999
Q ss_pred EEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc--ccCCccCCCCCcceEEcccCCCccccc-cc
Q 038031 569 LDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK--RLGTALPLPASLTSLSISRFPNLERLS-SS 645 (729)
Q Consensus 569 L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~ 645 (729)
|++++|.+....+ ..+..+++|++|++++|. +..++.... .....+..+++|+.|++++ +.++.+| ..
T Consensus 485 L~Ls~N~l~~i~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~ 555 (680)
T 1ziw_A 485 LDLSNNNIANIND----DMLEGLEKLEILDLQHNN----LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEV 555 (680)
T ss_dssp EECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred EECCCCCCCcCCh----hhhccccccCEEeCCCCC----ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHH
Confidence 9999999876543 467899999999999998 555543210 0112346789999999999 6888998 46
Q ss_pred CCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCc
Q 038031 646 IVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCP 684 (729)
Q Consensus 646 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~ 684 (729)
+..+++|++|++++ +.++.+|...+ +++|+.|++++|.
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 89999999999998 68899988654 6899999999995
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.7e-32 Score=307.43 Aligned_cols=508 Identities=15% Similarity=0.104 Sum_probs=326.8
Q ss_pred CCccEEEEeeeCCCCC-CcccCCCCCCCccEEEEccCCCCCcCC-CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKF-PTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPF 175 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 175 (729)
++++.|+++++.+..+ |..+ ..+++|++|++++|......| .++++++|++|++++|......+..+. .+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTF--SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS------GP 104 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTS--TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS------SC
T ss_pred CcCcEEEccCCccCcCChhHh--ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc------cc
Confidence 4677777777766655 3334 356777777777765333333 367777777777777643333333322 26
Q ss_pred CCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccc-cCCC--CCCCccEEEEEccCCc---ccccCCCCc
Q 038031 176 PCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG-TLPE--HLPALQMLAIYKCEKL---SISITSLPA 249 (729)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~--~l~~L~~L~l~~~~~l---~~~~~~l~~ 249 (729)
++|++|++.++. ++...... +..+++|++|++++|. +.+ .+|. .+++|+.|++++|... ...+..+++
T Consensus 105 ~~L~~L~L~~n~-i~~l~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 105 KALKHLFFIQTG-ISSIDFIP----LHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTCCEEECTTSC-CSCGGGSC----CTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred ccccEeeccccC-cccCCcch----hccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 777777777652 22221111 4667778888887764 331 1122 3567777877777522 224556777
Q ss_pred cc--EEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCC--C
Q 038031 250 LC--KLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDIC--S 325 (729)
Q Consensus 250 L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~--~ 325 (729)
|+ +|++++|......+... ....|+.|++.++..+.. .+..+. .
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~-------~~~~l~~~~ 226 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAF-------------------------DSAVFQSLNFGGTQNLLV-------IFKGLKNST 226 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTT-------------------------TTCEEEEEECTTCSCHHH-------HHHHTTTCE
T ss_pred cceeEEecCCCccCccChhHh-------------------------hhccccccccCCchhHHH-------Hhhhccccc
Confidence 77 67777776555443311 234577777766653221 223333 3
Q ss_pred ccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCC-CCcC
Q 038031 326 LKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEV-ALPS 404 (729)
Q Consensus 326 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~ 404 (729)
++.+.+..+..+....... ..+..+. ..+|++|++++|......+..+..+++|++|++++| .++.+|.. ..++
T Consensus 227 l~~l~~~~~~~~~~~~i~~--~~~~~l~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~ 301 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISP--AVFEGLC--EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLS 301 (606)
T ss_dssp EEEEECCCCTTSCCCCCCG--GGGGGGG--GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCT
T ss_pred hhheechhhccccccccCh--hHhchhh--cCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccc
Confidence 4444444444333221111 1121111 137899999988765555556888999999999984 67788753 3378
Q ss_pred CcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc--CCCCCCCeEEEecCCCCcccccccCcccccccc
Q 038031 405 KLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV--QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRR 482 (729)
Q Consensus 405 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 482 (729)
+|++|++++|. +..++...+ ..+++|++|++++|.....++.. .-.++|+.|+++++. ++.+......+. .
T Consensus 302 ~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~ 374 (606)
T 3t6q_A 302 TLKKLVLSANK-FENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLR----N 374 (606)
T ss_dssp TCCEEECTTCC-CSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTT----T
T ss_pred cCCEEECccCC-cCcCchhhh-hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcc----c
Confidence 99999999987 555544333 78899999999987554445443 223669999988875 444411122222 5
Q ss_pred ccccccceEEecCCCCccccccCCCC--ccccccccccccccccccCcccccccC-cCCCCCccceEEEccCCCCCCC-C
Q 038031 483 YTSSLLEKLEIWDCPSLTCIFSKNEL--PATLESLEVGNLPPSLKSLSRLEALPK-GLHNLSCLQELTIIGGALPSLE-E 558 (729)
Q Consensus 483 l~~~~L~~L~l~~c~~l~~~~~~~~~--~~~L~~L~~~~~~~~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~ 558 (729)
++ +|+.|+++++ .+.. .+...+ .++|++| ++.++.-....+. .+..+++|++|++++|.+.... .
T Consensus 375 l~--~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L-------~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 375 LS--HLQSLNLSYN-EPLS-LKTEAFKECPQLELL-------DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp CT--TCCEEECCSC-SCEE-ECTTTTTTCTTCSEE-------ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred CC--CCCEEECCCC-cCCc-CCHHHhcCCccCCeE-------ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 66 8999999885 3444 322222 3678888 7766544333333 3789999999999999888665 5
Q ss_pred CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCC
Q 038031 559 EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPN 638 (729)
Q Consensus 559 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 638 (729)
..+.+++|++|++++|.+.+.... ....+..+++|++|++++|. +..++.. ++..+++|+.|++++|..
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~----l~~~~~~------~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCD----LSSIDQH------AFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSC----CCEECTT------TTTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCc----cCccChh------hhccccCCCEEECCCCcc
Confidence 567789999999999998763221 02467889999999999998 5555432 225789999999999544
Q ss_pred cccccccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCchhH
Q 038031 639 LERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPLIE 687 (729)
Q Consensus 639 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~l~ 687 (729)
....|..+..+++| +|++++| .++.++...+ +++|+.|++++||...
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCccc
Confidence 44455889999999 9999995 6777766533 6899999999998644
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.8e-31 Score=298.57 Aligned_cols=291 Identities=18% Similarity=0.105 Sum_probs=196.9
Q ss_pred cccEEEeeecCCcc-cccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 358 RLEYLGLLYCEGLV-KLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 358 ~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
.++++.+..+..+. .+|. +..+++|+.|++++ +.++.++....+++|++|++++|. +..+|. -.+++|++|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~----~~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPT----LDLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES-CCCCCCCCCCTTCCCSEEEEESCC-CSSCCC----CCCSSCCEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecC-ccchhhhhccccccCCEEEccccc-Cccccc----CCCCccceee
Confidence 56666664333333 3443 67777777777777 456666655556777777777777 366662 1667777777
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccC-CCCccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSK-NELPATLESL 515 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L 515 (729)
+++|..+..+....+ ++|+.|+++++. ++.+......+. .++ +|+.|++++|. +.. ++. ..-.++|++|
T Consensus 335 l~~n~~~~~~~~~~l-~~L~~L~ls~n~-l~~~~~~~~~~~----~~~--~L~~L~L~~n~-l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 335 LTMNKGSISFKKVAL-PSLSYLDLSRNA-LSFSGCCSYSDL----GTN--SLRHLDLSFNG-AII-MSANFMGLEELQHL 404 (606)
T ss_dssp EESCSSCEECCCCCC-TTCCEEECCSSC-EEEEEECCHHHH----CCS--CCCEEECCSCS-EEE-ECCCCTTCTTCCEE
T ss_pred ccCCcCccchhhccC-CCCCEEECcCCc-cCCCcchhhhhc----cCC--cccEeECCCCc-ccc-chhhccCCCCCCee
Confidence 777655544433233 447777777653 333210011111 455 78888887753 444 331 1223567777
Q ss_pred cccccccccccCccccccc-CcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC
Q 038031 516 EVGNLPPSLKSLSRLEALP-KGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS 593 (729)
Q Consensus 516 ~~~~~~~~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 593 (729)
.+.++.-....| ..+..+++|++|++++|.+.... .....+++|++|++++|.+..... ...+..+++
T Consensus 405 -------~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~ 474 (606)
T 3vq2_A 405 -------DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL---SNVFANTTN 474 (606)
T ss_dssp -------ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTT
T ss_pred -------ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch---HHhhccCCC
Confidence 666654333344 46789999999999999887644 566778999999999999887432 347889999
Q ss_pred cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccc-cccCCCCCCccEEeecCCCCCCCCCCCC-C
Q 038031 594 LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERL-SSSIVDLQNLTELHLWDCPKLKYFPEKG-L 671 (729)
Q Consensus 594 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~ 671 (729)
|++|++++|. +..++... +..+++|++|++++| .++.+ |..+..+++|++|++++| .++.+|... .
T Consensus 475 L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~ 542 (606)
T 3vq2_A 475 LTFLDLSKCQ----LEQISWGV------FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH 542 (606)
T ss_dssp CCEEECTTSC----CCEECTTT------TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG
T ss_pred CCEEECCCCc----CCccChhh------hcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh
Confidence 9999999998 55554321 247899999999995 55555 688999999999999995 688888761 2
Q ss_pred C-CccceeeccCCchhH
Q 038031 672 P-SSLLQLWISGCPLIE 687 (729)
Q Consensus 672 ~-~~L~~L~l~~n~~l~ 687 (729)
+ ++|+.|++++||...
T Consensus 543 l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCTTCCEEECCSCCCCC
T ss_pred hcccCcEEEccCCCccc
Confidence 3 479999999998644
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=5.6e-31 Score=299.27 Aligned_cols=503 Identities=16% Similarity=0.101 Sum_probs=301.0
Q ss_pred ccCCceeEecCccCCCChhhhhhcccCCcccCCceEEEEeeCCCCCCCchhhhHHhhhccCCCCCCccEEEEeeeCCCCC
Q 038031 34 MHLRGALEISKLENVKDIGDAKEAGLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLDQFCVCGYGGTKF 113 (729)
Q Consensus 34 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 113 (729)
++|+ .|++++. .+.......|+++++|++|++++ +. .. ......+..+++|++|++++|.+...
T Consensus 32 ~~l~-~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~--n~------l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 32 SSTK-NIDLSFN----PLKILKSYSFSNFSELQWLDLSR--CE------IE---TIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TTCC-EEECTTS----CCCEECTTTTTTCTTCCEEECTT--CC------CC---EECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCcC-EEECCCC----CcCEeChhhccCCccCcEEeCCC--Cc------cc---ccCHHHhhchhhcCEeECCCCccccc
Confidence 5677 7777652 23444455688888888888874 11 01 11123466778888888888877766
Q ss_pred -CcccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCce-EcCccccCCCCCCCCCCcceeeecccccc
Q 038031 114 -PTWLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVK-RLGSEFYGDDSPIPFPCLETLRFEDMQEW 189 (729)
Q Consensus 114 -~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 189 (729)
|..+ ..+++|++|++++|.. ..++ .++++++|++|++++|.... .++..+.. +++|++|++.++ .+
T Consensus 96 ~p~~~--~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~Ls~n-~l 165 (606)
T 3vq2_A 96 SPGSF--SGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN------LTNLVHVDLSYN-YI 165 (606)
T ss_dssp CTTSS--TTCTTCCEEECTTSCC-CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT------CTTCCEEECCSS-CC
T ss_pred Chhhc--CCcccCCEEEccCCcc-ccccccccCCCCCCCEEeCCCCcccceechHhHhh------cCCCCEEEccCC-cc
Confidence 5566 4688888888888763 3333 47888888888888874332 23443322 788888888775 23
Q ss_pred cccccCCCCCCCccCCcc----ceEeeccCccccccCCC---CCCCccEEEEEccCCc----ccccCCCCcccEEEEeCC
Q 038031 190 EDWIPHGSSQGVERFPKL----RELQILRCSKLQGTLPE---HLPALQMLAIYKCEKL----SISITSLPALCKLVIGGC 258 (729)
Q Consensus 190 ~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~---~l~~L~~L~l~~~~~l----~~~~~~l~~L~~L~l~~~ 258 (729)
+...... +..+++| .+|+++++. ++ .++. ...+|+.|++++|... ...+..++.|+.+++...
T Consensus 166 ~~~~~~~----~~~l~~L~~~l~~L~l~~n~-l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 166 QTITVND----LQFLRENPQVNLSLDMSLNP-ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp CEECTTT----THHHHHCTTCCCEEECTTCC-CC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eecChhh----hhhhhccccccceeeccCCC-cc-eeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 3322211 3333333 367777764 44 2322 1236777777776532 223445666666655432
Q ss_pred CCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCcc
Q 038031 259 KKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQ 338 (729)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 338 (729)
........ ..+.......+..+ .++.+.+..+..+.
T Consensus 240 ~~~~~~~l-------------------------------------------~~~~~~~~~~l~~l-~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 240 EFKDERNL-------------------------------------------EIFEPSIMEGLCDV-TIDEFRLTYTNDFS 275 (606)
T ss_dssp CCTTSCCC-------------------------------------------SCCCGGGGTTGGGS-EEEEEEECCCTTCC
T ss_pred ccccCCcc-------------------------------------------cccChHHhhhhhhc-cHhheecccccccc
Confidence 21110000 00000000011111 34444443333333
Q ss_pred ccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCC
Q 038031 339 SLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALK 418 (729)
Q Consensus 339 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~ 418 (729)
...+. +..+ ++|++|+++++.. +.+| .+..+++|++|++++| .++.+|.. .+++|++|++++|..+.
T Consensus 276 ~~~~~-----~~~l----~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n-~l~~lp~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 276 DDIVK-----FHCL----ANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRC-QLKQFPTL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp GGGGS-----CGGG----TTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESC-CCSSCCCC-CCSSCCEEEEESCSSCE
T ss_pred ccccc-----cccC----CCCCEEEecCccc-hhhh-hccccccCCEEEcccc-cCcccccC-CCCccceeeccCCcCcc
Confidence 22221 1111 5666666666653 4444 5666666666666664 33666644 56666666666665444
Q ss_pred ccccccccCCCCCccEEEeecCCCccccc---c-cCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEec
Q 038031 419 SLPEAWMCDTNSSLEILNIQYCCSLRYIV---E-VQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIW 494 (729)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~ 494 (729)
.++ . ..+++|++|++++| .+.... . ..-.++|+.|+++++. ++.+ +..+. .++ +|+.|+++
T Consensus 343 ~~~--~--~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~--~~~~~-----~l~--~L~~L~l~ 407 (606)
T 3vq2_A 343 SFK--K--VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM--SANFM-----GLE--ELQHLDFQ 407 (606)
T ss_dssp ECC--C--CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEE--CCCCT-----TCT--TCCEEECT
T ss_pred chh--h--ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccc--hhhcc-----CCC--CCCeeECC
Confidence 331 1 45666666666664 232221 1 1122446666666654 4444 32221 455 77777777
Q ss_pred CCCCccccccCC--CCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCC--CCCCCCCCCCcceEE
Q 038031 495 DCPSLTCIFSKN--ELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPS--LEEEDGLPTNLQSLD 570 (729)
Q Consensus 495 ~c~~l~~~~~~~--~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~ 570 (729)
++ .+....+.. .-.++|++| +++++.-....|..+..+++|++|++++|.+.. ++...+.+++|++|+
T Consensus 408 ~n-~l~~~~~~~~~~~l~~L~~L-------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 408 HS-TLKRVTEFSAFLSLEKLLYL-------DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TS-EEESTTTTTTTTTCTTCCEE-------ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CC-ccCCccChhhhhccccCCEE-------ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 64 233312211 223567777 666665555567778899999999999998875 456677889999999
Q ss_pred ecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc-cccccccCCccCCCCCcceEEcccCCCcccccccCCCC
Q 038031 571 IRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF-PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDL 649 (729)
Q Consensus 571 L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l 649 (729)
+++|.+....+ ..+..+++|++|++++|. +..+ |... ..+++|++|++++ +.++.+|..+..+
T Consensus 480 Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~p~~~~~l 543 (606)
T 3vq2_A 480 LSKCQLEQISW----GVFDTLHRLQLLNMSHNN----LLFLDSSHY-------NQLYSLSTLDCSF-NRIETSKGILQHF 543 (606)
T ss_dssp CTTSCCCEECT----TTTTTCTTCCEEECCSSC----CSCEEGGGT-------TTCTTCCEEECTT-SCCCCEESCGGGS
T ss_pred CCCCcCCccCh----hhhcccccCCEEECCCCc----CCCcCHHHc-------cCCCcCCEEECCC-CcCcccCHhHhhh
Confidence 99998887654 367899999999999998 5555 4444 4789999999999 5688999888888
Q ss_pred C-CccEEeecCCCCCC
Q 038031 650 Q-NLTELHLWDCPKLK 664 (729)
Q Consensus 650 ~-~L~~L~l~~c~~l~ 664 (729)
+ +|++|++++|+..-
T Consensus 544 ~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CTTCCEEECCSCCCCC
T ss_pred cccCcEEEccCCCccc
Confidence 7 69999999976443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.3e-30 Score=290.61 Aligned_cols=518 Identities=15% Similarity=0.111 Sum_probs=349.2
Q ss_pred cEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcC-C-CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCc
Q 038031 101 DQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTAL-P-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCL 178 (729)
Q Consensus 101 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 178 (729)
+.++.++.....+|..+ ..++++|++++|. +..+ + .++++++|++|++++|......+..|.+ +++|
T Consensus 15 ~~~~c~~~~l~~iP~~l----~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L 83 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL----PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS------QHRL 83 (606)
T ss_dssp TEEECTTSCCSSCCTTS----CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT------CTTC
T ss_pred ceEECCCCCcccCcCCC----CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccC------cccc
Confidence 35666666677788765 4589999999987 4444 3 5899999999999998544433444433 8999
Q ss_pred ceeeecccccccccccCCCCCCCccCCccceEeeccCccccc---cCCCCCCCccEEEEEccCCcc---cccCCCCcccE
Q 038031 179 ETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG---TLPEHLPALQMLAIYKCEKLS---ISITSLPALCK 252 (729)
Q Consensus 179 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~ 252 (729)
++|++.++. +....+.. +..+++|++|++++|. +++ .....+++|++|++++|.... ..+..+++|++
T Consensus 84 ~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 84 DTLVLTANP-LIFMAETA----LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp CEEECTTCC-CSEECTTT----TSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred CeeeCCCCc-ccccChhh----hcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 999999873 33332222 6789999999999884 442 222467889999999887332 23344889999
Q ss_pred EEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCcc--EEEEeccCCCchhhhhhhhhhhcCCCccEEE
Q 038031 253 LVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLE--ELEIKNIKNETHIWKSYNELLQDICSLKRLT 330 (729)
Q Consensus 253 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 330 (729)
|++++|......... ...+++|+ .|++.++. +..++. .. .....|+.|+
T Consensus 158 L~L~~n~l~~~~~~~------------------------~~~l~~L~~l~L~l~~n~-l~~~~~---~~-~~~~~L~~L~ 208 (606)
T 3t6q_A 158 LDFQNNAIHYLSKED------------------------MSSLQQATNLSLNLNGND-IAGIEP---GA-FDSAVFQSLN 208 (606)
T ss_dssp EECCSSCCCEECHHH------------------------HHTTTTCCSEEEECTTCC-CCEECT---TT-TTTCEEEEEE
T ss_pred EEcccCcccccChhh------------------------hhhhcccceeEEecCCCc-cCccCh---hH-hhhccccccc
Confidence 999998766543321 01567777 66666653 333332 22 2335788888
Q ss_pred eccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcc--cc-cccccCCC--CccEEEeccCCCcccCCCCCC--c
Q 038031 331 IRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLV--KL-PQSSLSLC--SLREIEIYNCSSLVSFPEVAL--P 403 (729)
Q Consensus 331 l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~~-~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~--~ 403 (729)
+++|..+... +..+ ....++.+.+..+.... .+ +..+..+. +|+.|++++ +.++.++...+ +
T Consensus 209 l~~~~~~~~~--------~~~l--~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~-n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 209 FGGTQNLLVI--------FKGL--KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK-HYFFNISSNTFHCF 277 (606)
T ss_dssp CTTCSCHHHH--------HHHT--TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT-CCCSSCCTTTTTTC
T ss_pred cCCchhHHHH--------hhhc--cccchhheechhhccccccccChhHhchhhcCceeEEEeec-CccCccCHHHhccc
Confidence 8888744322 2122 00244555554443322 11 12233332 799999998 57888876433 8
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc--CCCCCCCeEEEecCCCCcccccccCccccccc
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV--QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSR 481 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 481 (729)
++|++|++++|. ++.+|..+ ..+++|++|++++| .+..++.. .-.++|+.|++.++.....+ +...+.
T Consensus 278 ~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~---- 347 (606)
T 3t6q_A 278 SGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLEL--GTGCLE---- 347 (606)
T ss_dssp TTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBC--CSSTTT----
T ss_pred cCCCEEeccCCc-cCCCChhh--cccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccccc--chhhhh----
Confidence 999999999997 77888765 78999999999986 44444322 23357999999998644445 555444
Q ss_pred cccccccceEEecCCCCccccc--cC-CCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-
Q 038031 482 RYTSSLLEKLEIWDCPSLTCIF--SK-NELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE- 557 (729)
Q Consensus 482 ~l~~~~L~~L~l~~c~~l~~~~--~~-~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~- 557 (729)
.++ +|+.|+++++. +..+. +. ..-.++|++| ++.++.-....|..+..+++|++|++++|.+....
T Consensus 348 ~l~--~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L-------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 348 NLE--NLRELDLSHDD-IETSDCCNLQLRNLSHLQSL-------NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp TCT--TCCEEECCSSC-CCEEEESTTTTTTCTTCCEE-------ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccC--cCCEEECCCCc-cccccCcchhcccCCCCCEE-------ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 677 99999999854 33311 11 1223679999 77776544445677899999999999999877654
Q ss_pred -CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccC
Q 038031 558 -EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRF 636 (729)
Q Consensus 558 -~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 636 (729)
.....+++|++|++++|.+....+ ..+..+++|++|++++|... -..++.. ..+..+++|++|++++|
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~--~~~~~~~-----~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFP--KGNIQKT-----NSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCG--GGEECSS-----CGGGGCTTCCEEECTTS
T ss_pred chhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCC--ccccccc-----hhhccCCCccEEECCCC
Confidence 336677999999999999876554 36788999999999999842 1112211 12347899999999995
Q ss_pred CCcccc-cccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCchhHHhhhccCCCCcccccccceEEeCCeE
Q 038031 637 PNLERL-SSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPLIEEKCRKDGGQYWDLLTHIPCVKIDWER 713 (729)
Q Consensus 637 ~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (729)
.++.+ |..+..+++|++|++++| .++.++...+ +++| .|++++|.... .....+..+++++.+.+++..
T Consensus 487 -~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 487 -DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISI-----ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCC-----CCGGGHHHHHTSSEEECTTCC
T ss_pred -ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccc-----cCHhhcccCCCCCEEeCCCCC
Confidence 56665 588999999999999996 5655544333 6788 99999996431 111223445566666666654
Q ss_pred E
Q 038031 714 L 714 (729)
Q Consensus 714 ~ 714 (729)
+
T Consensus 559 ~ 559 (606)
T 3t6q_A 559 L 559 (606)
T ss_dssp E
T ss_pred c
Confidence 3
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=296.12 Aligned_cols=506 Identities=16% Similarity=0.091 Sum_probs=281.1
Q ss_pred CCccEEEEeeeCCCCC-CcccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKF-PTWLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIP 174 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 174 (729)
++++.|+|++|.+... |..+ ..+++|++|++++|.....++ .++++++|++|+|++|......+..|.+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~------ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSF--PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG------ 95 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSC--SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS------
T ss_pred CCcCEEECCCCcCCccChhHC--cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC------
Confidence 4566666665554443 2233 345666666666654444442 3556666666666665332222222222
Q ss_pred CCCcceeeecccccccc-cccCCCCCCCccCCccceEeeccCccccccCC----CCCCCccEEEEEccCCcc---cccCC
Q 038031 175 FPCLETLRFEDMQEWED-WIPHGSSQGVERFPKLRELQILRCSKLQGTLP----EHLPALQMLAIYKCEKLS---ISITS 246 (729)
Q Consensus 175 ~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~L~~L~l~~~~~l~---~~~~~ 246 (729)
+++|++|++.++. +.+ ...... +..+++|++|++++|. +++..+ ..+++|+.|++++|..-. ..+..
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~---~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGY---FRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCC---CSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred CcccCEeeCcCCC-CCcccccCcc---ccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 5566666666542 221 111111 3456666666666553 321211 245666666666654211 12222
Q ss_pred C--CcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCC--CCCCccEEEEeccCCCchhhhhhhhhhhc
Q 038031 247 L--PALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKP--RIPKLEELEIKNIKNETHIWKSYNELLQD 322 (729)
Q Consensus 247 l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 322 (729)
+ ++|+.|+++.|......+.. -+..+. ....|+.|++.++......+..... ...
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~--------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-~l~ 229 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVD--------------------WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN-AIS 229 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCC--------------------CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG-TSC
T ss_pred ccCCccceEECCCCccccccccc--------------------hhhcCCccccCceeEEecCCCcCchhHHHHHHh-hcC
Confidence 3 56666666666533321110 000000 0113666666654322222210000 011
Q ss_pred CCCccEEEeccCC--------CccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCc
Q 038031 323 ICSLKRLTIRRCP--------KIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSL 394 (729)
Q Consensus 323 l~~L~~L~l~~c~--------~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l 394 (729)
...++.+.+..+. .+...... .+..+ .+++|++|++++|......+..+..+++|+.|++++ +.+
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~----~f~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i 302 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQN----TFAGL--ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKI 302 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGT----TTTTT--TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCC
T ss_pred cccccceecccccccccccccccCCCChh----hhhcc--ccCCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcC
Confidence 2355555554211 11111111 01100 126777888877775555566677777888888877 456
Q ss_pred ccCCCCC--CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC--CCCCCeEEEecCCCCcccc
Q 038031 395 VSFPEVA--LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL--PPSLKQLTIWRCDNIRTLT 470 (729)
Q Consensus 395 ~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~ 470 (729)
+.++... .+++|++|++++|. +..+....+ ..+++|+.|++++| .+..++...+ .++|+.|+++++. ++.+
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i- 377 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF-YGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTI- 377 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCC-CSCCCSCSC-SSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCC-
T ss_pred CCCChHHhcCCCCCCEEECCCCC-CCccCHHHh-cCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcc-
Confidence 5554332 36778888887776 444433333 67777888888774 4554444322 3567777777764 4443
Q ss_pred cccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccC--cCCCCCccceEEE
Q 038031 471 VEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPK--GLHNLSCLQELTI 548 (729)
Q Consensus 471 ~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~--~~~~l~~L~~L~l 548 (729)
+ .++ +|+.|+++++ .+.. ++.. ..+++.+ ++.+ +.+..++. .+..+++|++|++
T Consensus 378 -~---------~~~--~L~~L~l~~N-~l~~-l~~~--~~~l~~L-------~ls~-N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 378 -H---------FIP--SIPDIFLSGN-KLVT-LPKI--NLTANLI-------HLSE-NRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp -S---------SCC--SCSEEEEESC-CCCC-CCCC--CTTCCEE-------ECCS-CCCCSSTTHHHHTTCTTCCEEEE
T ss_pred -c---------CCC--CcchhccCCC-Cccc-cccc--cccccee-------eccc-CccccCchhhhhhcCCccceeeC
Confidence 1 234 7777777773 3333 3322 2445666 4443 23333322 2457899999999
Q ss_pred ccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhh-ccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCC
Q 038031 549 IGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIE-RGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLP 625 (729)
Q Consensus 549 ~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l 625 (729)
++|++..++ .....+++|++|++++|.+....... ....+..+++|++|++++|. +..++... +..+
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~------~~~l 503 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY----LNSLPPGV------FSHL 503 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH----HTTCCTTS------SSSC
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc----ccccChhH------ccch
Confidence 999888765 23445689999999999876332100 02457889999999999998 77776543 3578
Q ss_pred CCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCchhH
Q 038031 626 ASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 626 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~l~ 687 (729)
++|+.|++++ +.++.+|..... ++|++|++++| .++.++... +.+|+.|++++||...
T Consensus 504 ~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~-~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 504 TALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-QLLAPNPDV-FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCC-CSSCCEEEEEEECCCC
T ss_pred hhhheeECCC-CCCCccChhhhh-ccccEEECCCC-cCCCCChhH-hCCcCEEEecCCCccc
Confidence 9999999999 678888743322 89999999994 566665543 5689999999988543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=290.10 Aligned_cols=495 Identities=16% Similarity=0.101 Sum_probs=343.6
Q ss_pred EEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCC-CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcce
Q 038031 102 QFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLET 180 (729)
Q Consensus 102 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 180 (729)
..+.+++..+.+|. + .++|++|++++|......+ .++++++|++|++++|.....++...++ .+++|++
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-----~L~~L~~ 77 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-----NLPNLRI 77 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-----SCTTCCE
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc-----CCCCCCE
Confidence 45566667777886 3 5799999999987433323 5899999999999999777777443322 3899999
Q ss_pred eeecccccccccccCCCCCCCccCCccceEeeccCccccccCC-----CCCCCccEEEEEccCCcc----cccCCCCccc
Q 038031 181 LRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLP-----EHLPALQMLAIYKCEKLS----ISITSLPALC 251 (729)
Q Consensus 181 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~l~~L~~L~l~~~~~l~----~~~~~l~~L~ 251 (729)
|+++++. +....+.. +..+++|++|++++|. +.+.+| ..+++|+.|++++|.... ..+..+++|+
T Consensus 78 L~Ls~N~-l~~~~p~~----~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 78 LDLGSSK-IYFLHPDA----FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp EECTTCC-CCEECTTS----SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred EECCCCc-CcccCHhH----ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 9999873 44333222 6889999999999884 553343 368899999999997322 3577899999
Q ss_pred EEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCC--CCccEEEEeccCCCchhhhhhhhhhhcCC-----
Q 038031 252 KLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRI--PKLEELEIKNIKNETHIWKSYNELLQDIC----- 324 (729)
Q Consensus 252 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~l~----- 324 (729)
+|++++|.......... ..+ ++|+.|.+.++......+. .+..++
T Consensus 152 ~L~Ls~N~i~~~~~~~l------------------------~~l~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~~~~ 203 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL------------------------EPLQGKTLSFFSLAANSLYSRVSV----DWGKCMNPFRN 203 (844)
T ss_dssp EEEEESSCCCCCCSGGG------------------------HHHHHCSSCCCEECCSBSCCCCCC----CCCSSSCTTTT
T ss_pred EEECCCCcCCeeCHHHc------------------------ccccCCccceEECCCCcccccccc----chhhcCCcccc
Confidence 99999987544322100 012 6788888887654332222 122222
Q ss_pred -CccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCC--------cc-cccccccC--CCCccEEEeccCC
Q 038031 325 -SLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEG--------LV-KLPQSSLS--LCSLREIEIYNCS 392 (729)
Q Consensus 325 -~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--------l~-~~~~~~~~--l~~L~~L~l~~c~ 392 (729)
.|+.|+++++.--.... ......+ ...+++++.++.+.. +. .....+.. .++|+.|++++|
T Consensus 204 ~~L~~L~Ls~n~l~~~~~-~~~~~~l-----~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n- 276 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDIT-GNFSNAI-----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG- 276 (844)
T ss_dssp CCBSEEBCSSCCSSTTTT-SGGGGTS-----CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-
T ss_pred CceeEEecCCCcCchhHH-HHHHhhc-----CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-
Confidence 49999999874222221 1111101 125788888763321 11 11122333 378999999994
Q ss_pred CcccCCCCC--CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccccc--CCCCCCCeEEEecCCCCcc
Q 038031 393 SLVSFPEVA--LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV--QLPPSLKQLTIWRCDNIRT 468 (729)
Q Consensus 393 ~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~ 468 (729)
.+..++... .+++|++|++++|. +..++...+ ..+++|++|++++| .+..+... .-.++|+.|+++++. ++.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~ 352 (844)
T 3j0a_A 277 FVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAF-YGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH-IAI 352 (844)
T ss_dssp CCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTT-TTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCC-CCC
T ss_pred cccccChhhhhcCCCCCEEECCCCc-CCCCChHHh-cCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCC-CCc
Confidence 666665433 38999999999998 555544444 88999999999986 45544333 223569999999874 666
Q ss_pred cccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEE
Q 038031 469 LTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTI 548 (729)
Q Consensus 469 l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l 548 (729)
+ +...+. .++ +|+.|+++++ .++. ++. .++|+.| .+.+ +++..+|.. ..+++.|++
T Consensus 353 ~--~~~~~~----~l~--~L~~L~Ls~N-~l~~-i~~---~~~L~~L-------~l~~-N~l~~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 353 I--QDQTFK----FLE--KLQTLDLRDN-ALTT-IHF---IPSIPDI-------FLSG-NKLVTLPKI---NLTANLIHL 408 (844)
T ss_dssp C--CSSCSC----SCC--CCCEEEEETC-CSCC-CSS---CCSCSEE-------EEES-CCCCCCCCC---CTTCCEEEC
T ss_pred c--Chhhhc----CCC--CCCEEECCCC-CCCc-ccC---CCCcchh-------ccCC-CCccccccc---ccccceeec
Confidence 6 555554 677 9999999985 4444 332 4678888 6665 355566643 568999999
Q ss_pred ccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCC
Q 038031 549 IGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPA 626 (729)
Q Consensus 549 ~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~ 626 (729)
++|++..++ .....+++|++|++++|.+..... ...+..+++|+.|++++|. +..++... .....+..++
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~L~~L~Ls~N~----l~~~~~~~-~~~~~~~~l~ 480 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSG---DQTPSENPSLEQLFLGENM----LQLAWETE-LCWDVFEGLS 480 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS---SSSSCSCTTCCBCEEESCC----CSSSCCSC-CCSSCSSCBC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCccccccc---ccccccCCccccccCCCCc----cccccccc-cchhhhcCcc
Confidence 999988876 234467999999999999876433 2345678999999999998 54333211 1123446789
Q ss_pred CcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCch
Q 038031 627 SLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 627 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~ 685 (729)
+|+.|++++ +.++.++ ..+..+++|++|++++ |.++.++...+.++|+.|++++|..
T Consensus 481 ~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 481 HLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQL 538 (844)
T ss_dssp CEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECC
T ss_pred cccEEECCC-CcccccChhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCcC
Confidence 999999999 5788877 5689999999999999 5889998877779999999999975
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=277.87 Aligned_cols=477 Identities=17% Similarity=0.172 Sum_probs=279.8
Q ss_pred CCccEEEEeeeCCCCCCc-ccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKFPT-WLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIP 174 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 174 (729)
++++.|+++++.+..++. .+ ..+++|++|++++|. +..++ .++++++|++|++++|. ++.++...+ ..
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF-----SG 98 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT--TTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT-----TT
T ss_pred ccccEEEccCCccCccChhHh--hCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhh-----cC
Confidence 356666666655544432 22 345666666666654 33333 25566666666666653 333332221 12
Q ss_pred CCCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccc-cCCC---CCCCccEEEEEccCCcc---cccCCC
Q 038031 175 FPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG-TLPE---HLPALQMLAIYKCEKLS---ISITSL 247 (729)
Q Consensus 175 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~---~l~~L~~L~l~~~~~l~---~~~~~l 247 (729)
+++|++|++.++. ++...... ++.+++|++|+++++. +++ .+|. .+++|++|++++|..-. ..+..+
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~----~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFP----IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCS----CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred ccccccccccccc-cccCCCcc----ccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 5666666666542 22221111 4556666666666653 321 2332 34566666666554211 123334
Q ss_pred Ccc----cEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCC-Cchhhhhhhhhhhc
Q 038031 248 PAL----CKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKN-ETHIWKSYNELLQD 322 (729)
Q Consensus 248 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~ 322 (729)
.+| +.+++++|.......... ....|+.|.+.+... ...++ ..+..
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~-------------------------~~~~L~~L~l~~n~~~~~~~~----~~~~~ 223 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAF-------------------------KEIRLHKLTLRNNFDSLNVMK----TCIQG 223 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTT-------------------------TTCEEEEEEEESCCSCTTHHH----HHHHT
T ss_pred hccchhhhhcccCCCCceecCHHHh-------------------------ccCcceeEecccccccccchh----hhhcC
Confidence 444 567777665544332211 122577777766432 12222 34556
Q ss_pred CCCccEEEecc--C---CCccccchhhhHHHHhhhhhccCcccEEEeeecC-CcccccccccCCCCccEEEeccCCCccc
Q 038031 323 ICSLKRLTIRR--C---PKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCE-GLVKLPQSSLSLCSLREIEIYNCSSLVS 396 (729)
Q Consensus 323 l~~L~~L~l~~--c---~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~l~~~~~~~~~l~~L~~L~l~~c~~l~~ 396 (729)
++.++...+.. . ..+..+..... .++.. ..++.+++.++. .....+..+..+++|++|++++| .++.
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~-~~l~~-----l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~ 296 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSAL-EGLCN-----LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIER 296 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTT-GGGGG-----SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECS
T ss_pred ccccceeeeccccccCchhhhhcchhhh-ccccc-----cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchh
Confidence 66666554431 1 12222222111 11111 257778887773 33456677888889999999884 6777
Q ss_pred CCCCCC-cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCc
Q 038031 397 FPEVAL-PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGI 475 (729)
Q Consensus 397 l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 475 (729)
+|.... + +|++|++++|. +..+|. ..+++|+.|+++++......+. ...++|+.|+++++. ++.+......
T Consensus 297 l~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~ 368 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQS 368 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHH
T ss_pred hhhhhccC-CccEEeeccCc-ccccCc----ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccc
Confidence 775444 4 88999998887 556665 3568888888888654433333 223457777777664 3322100111
Q ss_pred cccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCC
Q 038031 476 QSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPS 555 (729)
Q Consensus 476 ~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~ 555 (729)
+. .++ +|+.|++++| .+..++..+..+++|++|++++|.+..
T Consensus 369 ~~----~~~--~L~~L~l~~n--------------------------------~l~~~~~~~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 369 DF----GTT--SLKYLDLSFN--------------------------------GVITMSSNFLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp HH----TCS--CCCEEECCSC--------------------------------SEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred cc----ccC--ccCEEECCCC--------------------------------ccccccccccccCCCCEEEccCCcccc
Confidence 11 344 6667766663 222333346678899999999987776
Q ss_pred CC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEc
Q 038031 556 LE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSI 633 (729)
Q Consensus 556 l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 633 (729)
+. .....+++|++|++++|.+....+ ..+..+++|++|++++|... ...+|... ..+++|++|++
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~--~~~~p~~~-------~~l~~L~~L~l 477 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQ--ENFLPDIF-------TELRNLTFLDL 477 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTCEEG--GGEECSCC-------TTCTTCCEEEC
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccch----hhhhcCCcCcEEECcCCcCc--cccchhhh-------hcccCCCEEEC
Confidence 64 345667899999999998776543 36788899999999998731 13466544 47899999999
Q ss_pred ccCCCcccc-cccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCchh
Q 038031 634 SRFPNLERL-SSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPLI 686 (729)
Q Consensus 634 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~l 686 (729)
++| .++.+ |..+..+++|++|++++| .++.++...+ +++|+.|++++|+..
T Consensus 478 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 478 SQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 994 56655 678889999999999995 6777766433 788999999998753
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.8e-28 Score=275.26 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=31.7
Q ss_pred ccCCCCccEEEeccCCCcccCCC-------CCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecC
Q 038031 377 SLSLCSLREIEIYNCSSLVSFPE-------VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYC 440 (729)
Q Consensus 377 ~~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 440 (729)
+..+++|+.|++.++ .+..... ....++|++|++++|. +..+|...+ ..+++|++|++++|
T Consensus 277 ~~~l~~L~~L~l~~~-~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~-~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 277 VSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFS-QHLKSLEFLDLSEN 344 (549)
T ss_dssp CCCCTTCCEEEEESC-BCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHH-HHCTTCCEEECCSS
T ss_pred hhhhccccccccccc-ccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHH-hcCccccEEEccCC
Confidence 344566666666653 2222110 0113466666666665 555655433 34666666666664
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=268.07 Aligned_cols=484 Identities=17% Similarity=0.156 Sum_probs=285.3
Q ss_pred ccCCceeEecCccCCCChhhhhhcccCCcccCCceEEEEeeCCCCCCCchhhhHHhhhccCCCCCCccEEEEeeeCCCCC
Q 038031 34 MHLRGALEISKLENVKDIGDAKEAGLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLDQFCVCGYGGTKF 113 (729)
Q Consensus 34 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 113 (729)
++++ .|++++.. +.......|..+++|++|++++ +. .. ......+..+++|++|++++|.+...
T Consensus 28 ~~l~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~--n~------i~---~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 28 FSTK-NLDLSFNP----LRHLGSYSFFSFPELQVLDLSR--CE------IQ---TIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCC-EEECCSCC----CCEECTTTTTTCSSCCEEECTT--CC------CC---EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cccc-EEEccCCc----cCccChhHhhCCCCceEEECCC--Cc------CC---ccCcccccCchhCCEEeCcCCcCCcc
Confidence 3566 66665421 2333344567777777777764 11 00 11123455667777777777766555
Q ss_pred C-cccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCce-EcCccccCCCCCCCCCCcceeeecccccc
Q 038031 114 P-TWLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVK-RLGSEFYGDDSPIPFPCLETLRFEDMQEW 189 (729)
Q Consensus 114 ~-~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 189 (729)
+ ..+ ..+++|++|++++|. +..++ +++.+++|++|++++|.... .++..+.. +++|++|++.++. +
T Consensus 92 ~~~~~--~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~l~~n~-l 161 (570)
T 2z63_A 92 ALGAF--SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNK-I 161 (570)
T ss_dssp CTTTT--TTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG------CTTCCEEECTTSC-C
T ss_pred CHhhh--cCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcc------cCCCCEEeCcCCc-c
Confidence 4 334 356777777777764 44444 36777777777777763222 12333322 6677777776652 2
Q ss_pred cccccCCCCCCCccCCcc----ceEeeccCccccccCCCCC--CCccEEEEEccCCc----ccccCCCCcccEEEEeCCC
Q 038031 190 EDWIPHGSSQGVERFPKL----RELQILRCSKLQGTLPEHL--PALQMLAIYKCEKL----SISITSLPALCKLVIGGCK 259 (729)
Q Consensus 190 ~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~~l--~~L~~L~l~~~~~l----~~~~~~l~~L~~L~l~~~~ 259 (729)
....... +..+++| ++|+++++. +++..+..+ .+|+.|++++|..- ...+..+..++...+....
T Consensus 162 ~~~~~~~----~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 162 QSIYCTD----LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp CEECGGG----GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred ceecHHH----ccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 2221111 3344445 566666553 332222211 24555555554311 1112223333333222110
Q ss_pred CceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCC--CccEEEeccCCCc
Q 038031 260 KVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDIC--SLKRLTIRRCPKI 337 (729)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~--~L~~L~l~~c~~l 337 (729)
. . +...+..++. ..+..++ .++.+++.++..+
T Consensus 237 ~-----------------------------------~--------~~~~l~~~~~---~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 237 F-----------------------------------R--------NEGNLEKFDK---SALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp C-----------------------------------C--------CCSSCEECCT---TTTGGGGGSEEEEEEEEETTEE
T ss_pred c-----------------------------------c--------Cchhhhhcch---hhhccccccchhhhhhhcchhh
Confidence 0 0 0000111111 1122222 3555666655433
Q ss_pred cccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCC
Q 038031 338 QSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDAL 417 (729)
Q Consensus 338 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l 417 (729)
....+. .+..+ ++|++|++++|. ++.+|..+..+ +|++|++++| .++.+|. ..+++|++|++++|...
T Consensus 271 ~~~~~~----~~~~l----~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 271 LDDIID----LFNCL----TNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ESCSTT----TTGGG----TTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSC
T ss_pred hhhchh----hhcCc----CcccEEEecCcc-chhhhhhhccC-CccEEeeccC-cccccCc-ccccccCEEeCcCCccc
Confidence 332222 12222 788999998886 45677778788 9999999984 6667775 45788999999988844
Q ss_pred CccccccccCCCCCccEEEeecCCCccccc---c-cCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEe
Q 038031 418 KSLPEAWMCDTNSSLEILNIQYCCSLRYIV---E-VQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEI 493 (729)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l 493 (729)
...+. ..+++|++|++++|. +.... . ..-.++|+.|+++++. ++.+ +.. +. .++ +|+.|++
T Consensus 339 ~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~-~~----~l~--~L~~L~l 403 (570)
T 2z63_A 339 NAFSE----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITM--SSN-FL----GLE--QLEHLDF 403 (570)
T ss_dssp CBCCC----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEE--EEE-EE----TCT--TCCEEEC
T ss_pred ccccc----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccc--ccc-cc----ccC--CCCEEEc
Confidence 43332 567899999998853 43331 1 1223568888888875 4444 333 22 456 7888888
Q ss_pred cCCCCccccccCCCCccccccccccccccccccCccccccc-CcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEe
Q 038031 494 WDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALP-KGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDI 571 (729)
Q Consensus 494 ~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L 571 (729)
+++. +.. ..+ ..+..+++|++|++++|.+.... .....+++|++|++
T Consensus 404 ~~n~-l~~------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 404 QHSN-LKQ------------------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp TTSE-EES------------------------------CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cCCc-ccc------------------------------ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 7741 111 111 24578899999999999877654 55667799999999
Q ss_pred cCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc-cccccccCCccCCCCCcceEEcccCCCccccc-ccCCCC
Q 038031 572 RGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF-PLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDL 649 (729)
Q Consensus 572 ~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l 649 (729)
++|.+..... ...+..+++|++|++++|. +..+ |... ..+++|++|++++ +.++.++ ..+..+
T Consensus 453 ~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~----l~~~~~~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l 517 (570)
T 2z63_A 453 AGNSFQENFL---PDIFTELRNLTFLDLSQCQ----LEQLSPTAF-------NSLSSLQVLNMAS-NQLKSVPDGIFDRL 517 (570)
T ss_dssp TTCEEGGGEE---CSCCTTCTTCCEEECTTSC----CCEECTTTT-------TTCTTCCEEECCS-SCCSCCCTTTTTTC
T ss_pred cCCcCccccc---hhhhhcccCCCEEECCCCc----cccCChhhh-------hcccCCCEEeCCC-CcCCCCCHHHhhcc
Confidence 9999873221 2478899999999999998 5555 4433 4789999999999 5677776 568999
Q ss_pred CCccEEeecCCCCCCCCC
Q 038031 650 QNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 650 ~~L~~L~l~~c~~l~~l~ 667 (729)
++|++|++++|+.-...|
T Consensus 518 ~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred cCCcEEEecCCcccCCCc
Confidence 999999999976444433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.4e-26 Score=259.92 Aligned_cols=448 Identities=17% Similarity=0.200 Sum_probs=232.0
Q ss_pred CCccEEEEccCCCCCcC-C-CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCCCC
Q 038031 123 SNLVTLKFEDCGMCTAL-P-SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSSQG 200 (729)
Q Consensus 123 ~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 200 (729)
++|++|++++|. +..+ + .++++++|++|++++|. ++.++...+ ..+++|++|+++++. +.......
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~l~~L~~L~Ls~n~-l~~~~~~~---- 93 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAF-----YSLGSLEHLDLSDNH-LSSLSSSW---- 93 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECTTSC-CCSCCHHH----
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhc-----cccccCCEEECCCCc-cCccCHHH----
Confidence 455555555544 2222 1 25555555555555542 223322111 114555555555441 22111100
Q ss_pred CccCCccceEeeccCccccc-cC---CCCCCCccEEEEEccCCcc----cccCCCCcccEEEEeCCCCceeeccccccCc
Q 038031 201 VERFPKLRELQILRCSKLQG-TL---PEHLPALQMLAIYKCEKLS----ISITSLPALCKLVIGGCKKVVLRSATDHLGL 272 (729)
Q Consensus 201 ~~~~~~L~~L~l~~~~~l~~-~~---~~~l~~L~~L~l~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 272 (729)
++.+++|++|++++|. +++ .+ ...+++|+.|++++|..+. ..+..+++|++|++++|......+.
T Consensus 94 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------ 166 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ------ 166 (549)
T ss_dssp HTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT------
T ss_pred hccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh------
Confidence 3445556666665553 221 11 1234555555555554221 1345566777777776654432211
Q ss_pred ccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhh
Q 038031 273 QNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQL 352 (729)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l 352 (729)
....+++|+.|++.+.. ...++. ..+..+++|+.|+++++. +..+.... ..+
T Consensus 167 ------------------~l~~l~~L~~L~l~~n~-~~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~-----~~~ 218 (549)
T 2z81_A 167 ------------------SLKSIRDIHHLTLHLSE-SAFLLE---IFADILSSVRYLELRDTN-LARFQFSP-----LPV 218 (549)
T ss_dssp ------------------TTTTCSEEEEEEEECSB-STTHHH---HHHHSTTTBSEEEEESCB-CTTCCCCC-----CSS
T ss_pred ------------------hhhccccCceEecccCc-ccccch---hhHhhcccccEEEccCCc-cccccccc-----cch
Confidence 01134455555555433 222332 334456777777777654 22211000 000
Q ss_pred hhccCcccEEEeeecCCcc----cccccccCCCCccEEEeccCCCcccCCC--------CCCcCCcceEEEecCCCCCcc
Q 038031 353 CELSCRLEYLGLLYCEGLV----KLPQSSLSLCSLREIEIYNCSSLVSFPE--------VALPSKLKKIQIRHCDALKSL 420 (729)
Q Consensus 353 ~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~--------~~~~~~L~~L~l~~~~~l~~~ 420 (729)
...+++|++|+++++.... .++..+..+++|+.+++++|. +..+.. ...+.+|+.|++.++. +...
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~ 296 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQF 296 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccc-cchh
Confidence 1123677777777765332 223344566777777777753 322211 1224566666666654 2211
Q ss_pred ccc-----cccCCCCCccEEEeecCCCcccccccC--CCCCCCeEEEecCCCCccccccc--CccccccccccccccceE
Q 038031 421 PEA-----WMCDTNSSLEILNIQYCCSLRYIVEVQ--LPPSLKQLTIWRCDNIRTLTVEE--GIQSSSSRRYTSSLLEKL 491 (729)
Q Consensus 421 ~~~-----~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~--~~~~~~~~~l~~~~L~~L 491 (729)
... .+ ...++|+.|++++| .+..++... -.++|+.|+++++.-...+ +. ..+. .++ +|+.|
T Consensus 297 ~~~~~l~~~~-~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~----~l~--~L~~L 366 (549)
T 2z81_A 297 YLFYDLSTVY-SLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEY--LKNSACKG----AWP--SLQTL 366 (549)
T ss_dssp GGSCCCCHHH-HHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHH--HHHHTCTT----SST--TCCEE
T ss_pred hhcccchhhh-hhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCcccccc--ccchhhhh----ccc--cCcEE
Confidence 100 00 12345555555553 233333221 1233555555544311111 10 0011 233 45555
Q ss_pred EecCCCCccccccCCCCccccccccccccccccccCccccccc---CcCCCCCccceEEEccCCCCCCCCCCCCCCCcce
Q 038031 492 EIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALP---KGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQS 568 (729)
Q Consensus 492 ~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~---~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~ 568 (729)
++++| .++.++ ..+..+++|++|++++|++..++...+.+++|++
T Consensus 367 ~Ls~N--------------------------------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 367 VLSQN--------------------------------HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414 (549)
T ss_dssp ECTTS--------------------------------CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred EccCC--------------------------------cccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccE
Confidence 54442 233332 2356778888888888888888876777788888
Q ss_pred EEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCC
Q 038031 569 LDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVD 648 (729)
Q Consensus 569 L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 648 (729)
|++++|.+..... .-.++|++|++++|. +..++. .+++|++|++++ +.++.+|. ...
T Consensus 415 L~Ls~N~l~~l~~-------~~~~~L~~L~Ls~N~----l~~~~~----------~l~~L~~L~Ls~-N~l~~ip~-~~~ 471 (549)
T 2z81_A 415 LNLSSTGIRVVKT-------CIPQTLEVLDVSNNN----LDSFSL----------FLPRLQELYISR-NKLKTLPD-ASL 471 (549)
T ss_dssp EECTTSCCSCCCT-------TSCTTCSEEECCSSC----CSCCCC----------CCTTCCEEECCS-SCCSSCCC-GGG
T ss_pred EECCCCCcccccc-------hhcCCceEEECCCCC----hhhhcc----------cCChhcEEECCC-CccCcCCC-ccc
Confidence 8888887654321 113678888888887 555542 468888899988 57778875 456
Q ss_pred CCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 649 LQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 649 l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
+++|++|++++| .++.++...+ +++|+.|++++|+.
T Consensus 472 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 472 FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 888899999884 6777766533 77888999988874
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.5e-27 Score=262.73 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=89.8
Q ss_pred cCcCCCCCccceEEEccCCCCCCC---CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALPSLE---EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS 610 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~ 610 (729)
|..+..+++|++|++++|++..++ ...+.+++|++|++++|.+....+ ...+..+++|++|++++|.. .+.
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~---~~~~~~l~~L~~L~Ls~N~l---~~~ 414 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTKSLLSLNMSSNIL---TDT 414 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG---GCSCCCCTTCCEEECCSSCC---CGG
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc---cchhccCccCCEEECcCCCC---Ccc
Confidence 344556677777777777666543 334555777777777777765333 23466677788888888773 233
Q ss_pred ccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 611 FPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
+|... .++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|...+ +++|++|++++||.
T Consensus 415 ~~~~l---------~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 415 IFRCL---------PPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGGSC---------CTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhhh---------cccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 33322 26788888888 567777766667888888888884 6777776522 67788888888875
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5e-27 Score=266.68 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCCCccceEEEccCCCCCCCCCCCCC--------CCcceEEecCchhhhhhhhhccCCCC--CCCCcceeeeccCCCccc
Q 038031 538 HNLSCLQELTIIGGALPSLEEEDGLP--------TNLQSLDIRGNMEICKSLIERGRGFH--RFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~~~~~~--------~~L~~L~L~~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~~~~~ 607 (729)
..+++|++|++++|++..++...... ++|++|++++|.+.. ++. .+. .+++|++|++++|.
T Consensus 454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~~~l~~L~~L~Ls~N~---- 524 (636)
T 4eco_A 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD----DFRATTLPYLVGIDLSYNS---- 524 (636)
T ss_dssp HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCG----GGSTTTCTTCCEEECCSSC----
T ss_pred ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cCh----hhhhccCCCcCEEECCCCC----
Confidence 34677777777777777666322211 277777777777663 221 233 67777777777777
Q ss_pred cccccccccccCCccCCCCCcceEEccc------CCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeecc
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISR------FPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWIS 681 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 681 (729)
+..+|...+ .+++|+.|++++ |.....+|..+..+++|++|++++| .++.+|.. +.++|+.|+++
T Consensus 525 l~~ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls 595 (636)
T 4eco_A 525 FSKFPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIK 595 (636)
T ss_dssp CSSCCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECC
T ss_pred CCCcChhhh-------cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECc
Confidence 555666553 567777777743 3345566777777788888888774 45777764 34678888888
Q ss_pred CCch
Q 038031 682 GCPL 685 (729)
Q Consensus 682 ~n~~ 685 (729)
+|+.
T Consensus 596 ~N~l 599 (636)
T 4eco_A 596 DNPN 599 (636)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 7764
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1e-25 Score=257.50 Aligned_cols=501 Identities=16% Similarity=0.135 Sum_probs=282.7
Q ss_pred CCccEEEEeeeCCCCCCc-ccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKFPT-WLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIP 174 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 174 (729)
+++++|+|++|.++.+|. .+ ..+++|++|+|++|. ++.++ .|+++++|++|+|++| .++.++...++.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f--~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~----- 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----- 122 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT-----
T ss_pred cCCCEEEeeCCCCCCCCHHHH--hCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC-----
Confidence 467777777777766653 33 357777777777765 44554 3677777777777776 355555443222
Q ss_pred CCCcceeeecccccccccccCCCCCCCccCCccceEeeccCcccc-ccCCC---CCCCccEEEEEccCCccc---ccCCC
Q 038031 175 FPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQ-GTLPE---HLPALQMLAIYKCEKLSI---SITSL 247 (729)
Q Consensus 175 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~---~l~~L~~L~l~~~~~l~~---~~~~l 247 (729)
+++|++|++.++ .++.+.... ++.+++|++|+++++. ++ ..+|. .+++|+.|++++|..-.. .+..+
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~----~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFP----IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCC----CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCEEECCCC-cCCCCChhh----hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 677777777765 233322111 4667777777777663 32 12222 355666666665542111 11111
Q ss_pred Cc----ccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcC
Q 038031 248 PA----LCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDI 323 (729)
Q Consensus 248 ~~----L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l 323 (729)
.. ...++++.+.......... ....+..+.+.+......+.. ..+..+
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~-------------------------~~~~~~~l~l~~n~~~~~~~~---~~~~~l 248 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAF-------------------------KEIRLHKLTLRNNFDSLNVMK---TCIQGL 248 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTT-------------------------TTCEEEEEEEESCCSSHHHHH---HHHHTT
T ss_pred hhhhhhhhhhhcccCcccccCcccc-------------------------cchhhhhhhhhcccccccccc---hhhcCC
Confidence 11 2233444433322221100 122334444443222112222 345556
Q ss_pred CCccEEEeccC--C---CccccchhhhHHHHhhhhhccCcccEEEeeecCC---cccccccccCCCCccEEEeccCCCcc
Q 038031 324 CSLKRLTIRRC--P---KIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEG---LVKLPQSSLSLCSLREIEIYNCSSLV 395 (729)
Q Consensus 324 ~~L~~L~l~~c--~---~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~---l~~~~~~~~~l~~L~~L~l~~c~~l~ 395 (729)
..++...+... . .+...... .+... ..+....+..+.. ....+..+..+.+++.+.+.+ ..+.
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~----~~~~~----~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ 319 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKS----ALEGL----CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS-VTIE 319 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTT----TTGGG----GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES-CEEE
T ss_pred ccccccccccccccccccccccccc----ccccc----cchhhhhhhhhhhcccccchhhhhhhhcccccccccc-cccc
Confidence 66655554321 1 11111111 11111 3444444443321 122333455566777777776 3455
Q ss_pred cCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCccccc-ccC
Q 038031 396 SFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTV-EEG 474 (729)
Q Consensus 396 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~ 474 (729)
.+....+...|+.|++.+|. +..++. ..+..|+.+++.++.. ...+...-.++|+.+++++.. +..... +..
T Consensus 320 ~~~~~~~~~~L~~L~l~~~~-~~~~~~----~~l~~L~~l~l~~n~~-~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~ 392 (635)
T 4g8a_A 320 RVKDFSYNFGWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQS 392 (635)
T ss_dssp ECGGGGSCCCCSEEEEESCE-ESSCCC----CBCTTCCEEEEESCCS-CCBCCCCBCTTCCEEECCSSC-CBEEEECCHH
T ss_pred cccccccchhhhhhhccccc-ccCcCc----ccchhhhhcccccccC-CCCcccccccccccchhhccc-cccccccccc
Confidence 55555556677777777765 333332 3456677777766432 222222222347777665543 221110 111
Q ss_pred ccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccccc-CcCCCCCccceEEEccCCC
Q 038031 475 IQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALP-KGLHNLSCLQELTIIGGAL 553 (729)
Q Consensus 475 ~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~i 553 (729)
.. ... +++.+++..+..... .+.....++++.+ .+..+......+ ..+..+++++.+++++|.+
T Consensus 393 ~~-----~~~--~L~~L~~~~~~~~~~-~~~~~~l~~L~~l-------~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 393 DF-----GTI--SLKYLDLSFNGVITM-SSNFLGLEQLEHL-------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp HH-----SCS--CCCEEECCSCSEEEE-CSCCTTCTTCCEE-------ECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hh-----hhh--hhhhhhccccccccc-cccccccccccch-------hhhhcccccccccccccccccccccccccccc
Confidence 11 233 677777666432221 2222222456666 454444333333 3467899999999999988
Q ss_pred CCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEE
Q 038031 554 PSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLS 632 (729)
Q Consensus 554 ~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 632 (729)
..+. .....+++|++|++++|....... ...+..+++|++|++++|. +..++... +..+++|++|+
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N~----L~~l~~~~------f~~l~~L~~L~ 524 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQ----LEQLSPTA------FNSLSSLQVLN 524 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSC----CCEECTTT------TTTCTTCCEEE
T ss_pred ccccccccccchhhhhhhhhhcccccccC---chhhhhccccCEEECCCCc----cCCcChHH------HcCCCCCCEEE
Confidence 7665 556677999999999998765443 3578999999999999998 66665422 35789999999
Q ss_pred cccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC---CCccceeeccCCchhH
Q 038031 633 ISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL---PSSLLQLWISGCPLIE 687 (729)
Q Consensus 633 l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~n~~l~ 687 (729)
|++ ++++.++ ..+..+++|++|++++ |.++.++...+ +++|+.|++++||...
T Consensus 525 Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999 6788886 6789999999999999 56777766433 4789999999998643
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.9e-26 Score=263.55 Aligned_cols=365 Identities=17% Similarity=0.185 Sum_probs=244.4
Q ss_pred cccCCCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCC-----CCCCccEEEEeccCCCchhhhhh
Q 038031 242 ISITSLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKP-----RIPKLEELEIKNIKNETHIWKSY 316 (729)
Q Consensus 242 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~~~~~~ 316 (729)
..+..+++|+.|++++|..........+ -+ ...+...|.+|. .+++|+.|.+.++.....+|.
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~-~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-- 509 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDW---------ED-ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-- 509 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSC---------SC-TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG--
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccc---------cc-cccccccccCChhhhhccCCCCCEEECcCCCCCccChH--
Confidence 3567788888888888874431000000 00 000112222332 467899999998876666654
Q ss_pred hhhhhcCCCccEEEeccCCCccc--cchhhhHHHHhhh---hhccCcccEEEeeecCCcccccc--cccCCCCccEEEec
Q 038031 317 NELLQDICSLKRLTIRRCPKIQS--LVVEEEKDQQQQL---CELSCRLEYLGLLYCEGLVKLPQ--SSLSLCSLREIEIY 389 (729)
Q Consensus 317 ~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~l---~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~ 389 (729)
.+..+++|+.|+++++..++. ++.. +..+ ...+++|++|++++|... .+|. .+..+++|++|+++
T Consensus 510 --~l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 510 --FLYDLPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp --GGGGCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred --HHhCCCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 678899999999998875553 3322 2222 112369999999999855 8888 89999999999999
Q ss_pred cCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCC-ccEEEeecCCCcccccccC-CC--CCCCeEEEecCCC
Q 038031 390 NCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSS-LEILNIQYCCSLRYIVEVQ-LP--PSLKQLTIWRCDN 465 (729)
Q Consensus 390 ~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~-~~--~~L~~L~l~~~~~ 465 (729)
+| .++.+|....+++|+.|++++|. +..+|..+ ..+++ |+.|++++|. +..++... .. ++|+.|+++++.-
T Consensus 582 ~N-~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 582 HN-KVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TS-CCCBCCCCCTTSEESEEECCSSC-CSCCCTTS--CEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CC-CcccchhhcCCCcceEEECcCCc-cccchHHH--hhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcC
Confidence 84 67788866668999999999988 55777664 67888 9999998864 44554321 11 2366666666542
Q ss_pred CcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcC-CCCCccc
Q 038031 466 IRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGL-HNLSCLQ 544 (729)
Q Consensus 466 l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~-~~l~~L~ 544 (729)
-..+ + .+.. ....+..++|+.|++++| .+..+|..+ ..+++|+
T Consensus 657 ~g~i--p-~l~~-~l~~~~~~~L~~L~Ls~N--------------------------------~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 657 GSEG--R-NISC-SMDDYKGINASTVTLSYN--------------------------------EIQKFPTELFATGSPIS 700 (876)
T ss_dssp TTTS--S-SCSS-CTTTCCCCCEEEEECCSS--------------------------------CCCSCCHHHHHTTCCCS
T ss_pred CCcc--c-cchh-hhccccCCCcCEEEccCC--------------------------------cCCccCHHHHccCCCCC
Confidence 1111 1 0000 000111114444444442 333555544 4788999
Q ss_pred eEEEccCCCCCCCCCCCC--------CCCcceEEecCchhhhhhhhhccCCCC--CCCCcceeeeccCCCcccccccccc
Q 038031 545 ELTIIGGALPSLEEEDGL--------PTNLQSLDIRGNMEICKSLIERGRGFH--RFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 545 ~L~l~~~~i~~l~~~~~~--------~~~L~~L~L~~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.|++++|++..++..... +++|++|+|++|.+.. ++. .+. .+++|+.|++++|. +..+|..
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~----~l~~~~l~~L~~L~Ls~N~----L~~lp~~ 771 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD----DFRATTLPYLSNMDVSYNC----FSSFPTQ 771 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCG----GGSTTTCTTCCEEECCSSC----CSSCCCG
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chH----HhhhccCCCcCEEEeCCCC----CCccchh
Confidence 999999988888743322 1389999999998873 332 344 88999999999998 6668876
Q ss_pred ccccCCccCCCCCcceEEccc------CCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCch
Q 038031 615 DKRLGTALPLPASLTSLSISR------FPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~ 685 (729)
. ..+++|+.|++++ |.....+|..+..+++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 772 l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 772 P-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp G-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred h-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 6 3789999999976 4445677888899999999999995 55888885 557999999999975
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-26 Score=263.57 Aligned_cols=381 Identities=16% Similarity=0.172 Sum_probs=235.9
Q ss_pred CccCCccceEeeccCcccccc-----------------CCCCCCCccEEEEEccCCcccccC--CCCcccEEEEeCCCCc
Q 038031 201 VERFPKLRELQILRCSKLQGT-----------------LPEHLPALQMLAIYKCEKLSISIT--SLPALCKLVIGGCKKV 261 (729)
Q Consensus 201 ~~~~~~L~~L~l~~~~~l~~~-----------------~~~~l~~L~~L~l~~~~~l~~~~~--~l~~L~~L~l~~~~~~ 261 (729)
++.+++|++|+++++. +++. +|. .+. .+++|++|++++|...
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~------------------~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTE------------------DLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS------------------CCCGGGCTTCCEEEEECCTTC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCch------------------hhhhcccCCCCEEEecCCcCC
Confidence 6889999999999885 6643 554 334 5555566666655432
Q ss_pred eeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCc--hhhhhhhh--hhhcCCCccEEEeccCCCc
Q 038031 262 VLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNET--HIWKSYNE--LLQDICSLKRLTIRRCPKI 337 (729)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~--~~~~l~~L~~L~l~~c~~l 337 (729)
...+. ....+++|+.|++.++..++ .+|..... .+..+++|+.|+++++. +
T Consensus 263 ~~~p~------------------------~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 263 TKLPT------------------------FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp SSCCT------------------------TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred ccChH------------------------HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 21110 00134455555555544233 23331100 01234788888888765 4
Q ss_pred cccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC-cCC-cceEEEecCC
Q 038031 338 QSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL-PSK-LKKIQIRHCD 415 (729)
Q Consensus 338 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~-L~~L~l~~~~ 415 (729)
+.++.. ..+..+ ++|++|++++|...+.+| .+..+++|++|++++ +.++.+|.... +++ |++|++++|.
T Consensus 318 ~~ip~~---~~l~~l----~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 318 KTFPVE---TSLQKM----KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY-NQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SSCCCH---HHHTTC----TTCCEEECCSCCCEEECC-CCEEEEEESEEECCS-SEEEECCTTSEEECTTCCEEECCSSC
T ss_pred CccCch---hhhccC----CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC-CccccccHhhhhhcccCcEEEccCCc
Confidence 455431 023333 788888888887655777 778888888888887 46667765322 667 8888888887
Q ss_pred CCCccccccccCCCCCccEEEeecCCCccccccc-C-------CCCCCCeEEEecCCCCcccccccCccccccccccccc
Q 038031 416 ALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEV-Q-------LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSL 487 (729)
Q Consensus 416 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~-------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~ 487 (729)
+..+|..+....+++|++|++++|.-....+.. . -..+|+.|+++++. ++.+ +...+. .++ +
T Consensus 389 -l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l--p~~~~~----~l~--~ 458 (636)
T 4eco_A 389 -LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF--PKELFS----TGS--P 458 (636)
T ss_dssp -CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC--CTHHHH----TTC--C
T ss_pred -CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcC--CHHHHc----cCC--C
Confidence 557776542223457888888875433222211 0 11357777777654 4444 554443 355 7
Q ss_pred cceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCC--CCCC
Q 038031 488 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDG--LPTN 565 (729)
Q Consensus 488 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~--~~~~ 565 (729)
|+.|+++++ .++. ++...+. ..+..+.++++|++|++++|++..++.... .+++
T Consensus 459 L~~L~Ls~N-~l~~-i~~~~~~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 459 LSSINLMGN-MLTE-IPKNSLK----------------------DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp CSEEECCSS-CCSB-CCSSSSE----------------------ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECCCC-CCCC-cCHHHhc----------------------cccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 777777763 2222 2221110 000112345589999999999988886554 7799
Q ss_pred cceEEecCchhhhhhhhhccCCCCCCCCcceeeecc------CCCccccccccccccccCCccCCCCCcceEEcccCCCc
Q 038031 566 LQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGG------CDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNL 639 (729)
Q Consensus 566 L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~------n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 639 (729)
|++|++++|.+.. ++ ..+..+++|++|++++ |.. .+.+|... ..+++|++|++++ +.+
T Consensus 515 L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~~ls~N~l---~~~~p~~l-------~~l~~L~~L~Ls~-N~l 578 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FP----TQPLNSSTLKGFGIRNQRDAQGNRT---LREWPEGI-------TLCPSLTQLQIGS-NDI 578 (636)
T ss_dssp CCEEECCSSCCSS-CC----CGGGGCSSCCEEECCSCBCTTCCBC---CCCCCTTG-------GGCSSCCEEECCS-SCC
T ss_pred cCEEECCCCCCCC-cC----hhhhcCCCCCEEECCCCcccccCcc---cccChHHH-------hcCCCCCEEECCC-CcC
Confidence 9999999998887 33 3567899999999955 443 45566655 4789999999999 567
Q ss_pred ccccccCCCCCCccEEeecCCCCCCCCCCCCC----------CCccceeeccCCchhH
Q 038031 640 ERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL----------PSSLLQLWISGCPLIE 687 (729)
Q Consensus 640 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~l~~n~~l~ 687 (729)
+.+|..+. ++|++|++++| .+..+...+. +...+..++++|+.+.
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CccCHhHh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 99987655 89999999996 4555543322 1223556777887653
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2e-26 Score=265.91 Aligned_cols=434 Identities=14% Similarity=0.122 Sum_probs=268.3
Q ss_pred CCccEEEEccCCCCCcCC-CCCCCCCCCeEEEcCCCCceEc-CccccC--------------------------------
Q 038031 123 SNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRL-GSEFYG-------------------------------- 168 (729)
Q Consensus 123 ~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~-~~~~~~-------------------------------- 168 (729)
.+++.|+|+++...+.+| .++.+++|++|+|+.++.+... +.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 579999999988666777 4999999999999433332211 000000
Q ss_pred --------CCC-----CCCCCCcceeeecc-cccccccccCCCCCCCccCCccceEeeccCccccc--------------
Q 038031 169 --------DDS-----PIPFPCLETLRFED-MQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG-------------- 220 (729)
Q Consensus 169 --------~~~-----~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-------------- 220 (729)
... ......++.+.+.. ...++. ++..++.+++|++|+++++. +++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-----IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-----ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDY 476 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-----ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-----hhHHHhcCCCCCEEECcCCc-CCCCccccccccccccc
Confidence 000 00112222332222 122222 22237899999999999884 664
Q ss_pred ---cCCCCCCCccEEEEEccCCcccccC--CCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCC
Q 038031 221 ---TLPEHLPALQMLAIYKCEKLSISIT--SLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRI 295 (729)
Q Consensus 221 ---~~~~~l~~L~~L~l~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 295 (729)
.+|. .+. .+++|++|++++|......+.. ...+
T Consensus 477 ~~g~iP~------------------~l~f~~L~~L~~L~Ls~N~l~~~iP~~------------------------l~~L 514 (876)
T 4ecn_A 477 AKQYENE------------------ELSWSNLKDLTDVELYNCPNMTQLPDF------------------------LYDL 514 (876)
T ss_dssp HHHHTTS------------------CCCGGGCTTCCEEEEESCTTCCSCCGG------------------------GGGC
T ss_pred ccccCCh------------------hhhhccCCCCCEEECcCCCCCccChHH------------------------HhCC
Confidence 1553 333 4555555555555422211110 0134
Q ss_pred CCccEEEEeccCCCch--hhhhhhh---hhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCc
Q 038031 296 PKLEELEIKNIKNETH--IWKSYNE---LLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGL 370 (729)
Q Consensus 296 ~~L~~L~l~~~~~l~~--~~~~~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l 370 (729)
++|+.|++.++..++. +|..... .+..+++|+.|+++++. +..++.. ..+..+ ++|++|++++|...
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~---~~l~~L----~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPAS---ASLQKM----VKLGLLDCVHNKVR 586 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCH---HHHTTC----TTCCEEECTTSCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCCh---hhhhcC----CCCCEEECCCCCcc
Confidence 5555555555442332 3331111 22345688888888776 4455441 123333 78999999988754
Q ss_pred ccccccccCCCCccEEEeccCCCcccCCCCCC-cCC-cceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccc
Q 038031 371 VKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL-PSK-LKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVE 448 (729)
Q Consensus 371 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 448 (729)
.+| .+..+++|+.|++++| .++.+|.... +++ |++|++++|. +..+|..+.....++|+.|++++|.-...++.
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -cch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 777 7888999999999884 5667775333 677 9999999888 66777654212334599999988643332221
Q ss_pred cC------CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccccccccc
Q 038031 449 VQ------LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPP 522 (729)
Q Consensus 449 ~~------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~ 522 (729)
.. -..+|+.|+++++. ++.+ |...+. .++ +|+.|+++++ .+.. +|...+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~-L~~l--p~~~~~----~l~--~L~~L~Ls~N-~L~~-ip~~~~-------------- 717 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNE-IQKF--PTELFA----TGS--PISTIILSNN-LMTS-IPENSL-------------- 717 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSC-CCSC--CHHHHH----TTC--CCSEEECCSC-CCSC-CCTTSS--------------
T ss_pred chhhhccccCCCcCEEEccCCc-CCcc--CHHHHc----cCC--CCCEEECCCC-cCCc-cChHHh--------------
Confidence 11 11468888888875 5555 655553 456 8999999884 3333 322111
Q ss_pred ccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCC--CCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeec
Q 038031 523 SLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDG--LPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIG 600 (729)
Q Consensus 523 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls 600 (729)
. ..+..+.++++|+.|++++|++..++.... .+++|+.|+|++|.+... + ..+..+++|+.|+++
T Consensus 718 ---~-----~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p----~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 718 ---K-----PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-P----TQPLNSSQLKAFGIR 784 (876)
T ss_dssp ---S-----CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-C----CGGGGCTTCCEEECC
T ss_pred ---c-----cccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-c----hhhhcCCCCCEEECC
Confidence 0 000113455689999999998888886554 778999999999988763 2 356789999999997
Q ss_pred c------CCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCC
Q 038031 601 G------CDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPE 668 (729)
Q Consensus 601 ~------n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 668 (729)
+ |.. ...+|... ..+++|+.|++++ +.++.+|..+. ++|+.|++++|+ +..+..
T Consensus 785 ~N~~ls~N~l---~~~ip~~l-------~~L~~L~~L~Ls~-N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 785 HQRDAEGNRI---LRQWPTGI-------TTCPSLIQLQIGS-NDIRKVDEKLT--PQLYILDIADNP-NISIDV 844 (876)
T ss_dssp CCBCTTCCBC---CCCCCTTG-------GGCSSCCEEECCS-SCCCBCCSCCC--SSSCEEECCSCT-TCEEEC
T ss_pred CCCCcccccc---cccChHHH-------hcCCCCCEEECCC-CCCCccCHhhc--CCCCEEECCCCC-CCccCh
Confidence 7 443 44566555 4789999999999 55699987655 799999999964 555543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=253.81 Aligned_cols=440 Identities=15% Similarity=0.098 Sum_probs=291.1
Q ss_pred cEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCC--CCCCCCCCCeEEEcCCCCceEc-CccccCCCCCCCCCC
Q 038031 101 DQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRL-GSEFYGDDSPIPFPC 177 (729)
Q Consensus 101 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~~~ 177 (729)
++|+++++....+|..+ .++|++|++++|. +..++ .++++++|++|++++|. ++.+ +..+.+ +++
T Consensus 3 ~~l~ls~n~l~~ip~~~----~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~------l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL----SQKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKF------NQE 70 (520)
T ss_dssp CEEECTTSCCSSCCCSC----CTTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTT------CTT
T ss_pred ceEecCCCCcccccccc----cccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhc------ccC
Confidence 57889999888888755 3899999999987 44554 48899999999999985 4444 333322 788
Q ss_pred cceeeecccccccccccCCCCCCCccCCccceEeeccCccccc-cCCC---CCCCccEEEEEccCCcccccCCCCcc--c
Q 038031 178 LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG-TLPE---HLPALQMLAIYKCEKLSISITSLPAL--C 251 (729)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~---~l~~L~~L~l~~~~~l~~~~~~l~~L--~ 251 (729)
|++|+++++ .++.+.. . .+++|++|++++|. +++ .+|. .+++|+.|++++|..-...+..+++| +
T Consensus 71 L~~L~Ls~N-~l~~lp~------~-~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~ 141 (520)
T 2z7x_B 71 LEYLDLSHN-KLVKISC------H-PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141 (520)
T ss_dssp CCEEECCSS-CCCEEEC------C-CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEE
T ss_pred CCEEecCCC-ceeecCc------c-ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchhhccccccceee
Confidence 999999876 3443322 2 67888888888774 432 2332 34555555555554332333344444 5
Q ss_pred EEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCC-CccEEE
Q 038031 252 KLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDIC-SLKRLT 330 (729)
Q Consensus 252 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~-~L~~L~ 330 (729)
+|++++|.... ....+ ..+..+. ....++
T Consensus 142 ~L~l~~n~l~~----------------------------------------------~~~~~----~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 142 KVLLVLGETYG----------------------------------------------EKEDP----EGLQDFNTESLHIV 171 (520)
T ss_dssp EEEEEECTTTT----------------------------------------------SSCCT----TTTTTCCEEEEEEE
T ss_pred EEEeecccccc----------------------------------------------ccccc----ccccccccceEEEE
Confidence 55554443200 11111 1122222 122445
Q ss_pred eccCCCccccchhhhHHHHhhhhhccCcccEEEeeecC-------CcccccccccCCCCccEEEeccCCCccc-----CC
Q 038031 331 IRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCE-------GLVKLPQSSLSLCSLREIEIYNCSSLVS-----FP 398 (729)
Q Consensus 331 l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~-------~l~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~ 398 (729)
++++.....+... .+.. +++|+.|++++|. ..+.++ .+..+++|+.|++++| .+.. ++
T Consensus 172 l~~n~~~~~~~~~----~~~~----l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~ 241 (520)
T 2z7x_B 172 FPTNKEFHFILDV----SVKT----VANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI-ETTWNSFIRIL 241 (520)
T ss_dssp CCSSSCCCCCCCC----CCTT----CSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHH
T ss_pred eccCcchhhhhhh----hhhc----ccceeeccccccccccccceeecchh-hhccccchhhcccccc-ccCHHHHHHHH
Confidence 5555544333221 1112 2899999999986 233444 6888999999999985 3332 11
Q ss_pred CCCCcCCcceEEEecCCCCCcccccccc---CCCCCccEEEeecCCCcccccccC---C--CCCCCeEEEecCCCCcccc
Q 038031 399 EVALPSKLKKIQIRHCDALKSLPEAWMC---DTNSSLEILNIQYCCSLRYIVEVQ---L--PPSLKQLTIWRCDNIRTLT 470 (729)
Q Consensus 399 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~l~~L~~L~l~~c~~l~~~~~~~---~--~~~L~~L~l~~~~~l~~l~ 470 (729)
.....++|++|++++|.....+|...+. ..+++|+.++++++.. .++... . ..+++.|+++++. +..+.
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 318 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHML 318 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-ccccc
Confidence 1112468999999999844466665421 4678899999988543 333211 1 1459999999986 44331
Q ss_pred cccCccccccccccccccceEEecCCCCccccccC-CCCccccccccccccccccccCcccc---cccCcCCCCCccceE
Q 038031 471 VEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSK-NELPATLESLEVGNLPPSLKSLSRLE---ALPKGLHNLSCLQEL 546 (729)
Q Consensus 471 ~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~~~~~~~~l~~~~~l~---~l~~~~~~l~~L~~L 546 (729)
++ . .++ +|+.|+++++. ++...+. ..-.++|++| .+.++. +. .+|..+..+++|++|
T Consensus 319 ~~----~----~l~--~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L-------~L~~N~-l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 319 CP----S----KIS--PFLHLDFSNNL-LTDTVFENCGHLTELETL-------ILQMNQ-LKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CC----S----SCC--CCCEEECCSSC-CCTTTTTTCCCCSSCCEE-------ECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred ch----h----hCC--cccEEEeECCc-cChhhhhhhccCCCCCEE-------EccCCc-cCccccchHHHhhCCCCCEE
Confidence 11 1 556 99999999964 4431332 2233679999 776643 33 555668899999999
Q ss_pred EEccCCCCC-CCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCC
Q 038031 547 TIIGGALPS-LEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPL 624 (729)
Q Consensus 547 ~l~~~~i~~-l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~ 624 (729)
++++|.+.. ++. ....+++|++|++++|.+....+. .+. ++|++|++++|. +..+|.... .
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~--~~L~~L~Ls~N~----l~~ip~~~~-------~ 442 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----CLP--PRIKVLDLHSNK----IKSIPKQVV-------K 442 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----SCC--TTCCEEECCSSC----CCCCCGGGG-------G
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh----hhc--ccCCEEECCCCc----ccccchhhh-------c
Confidence 999999887 773 456679999999999998776553 221 799999999998 778887663 7
Q ss_pred CCCcceEEcccCCCccccccc-CCCCCCccEEeecCCC
Q 038031 625 PASLTSLSISRFPNLERLSSS-IVDLQNLTELHLWDCP 661 (729)
Q Consensus 625 l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 661 (729)
+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 443 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 443 LEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 89999999999 678899965 8899999999999974
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=7.5e-27 Score=253.50 Aligned_cols=280 Identities=26% Similarity=0.299 Sum_probs=138.3
Q ss_pred hhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC
Q 038031 320 LQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE 399 (729)
Q Consensus 320 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 399 (729)
++.+++|+.|+++++. ++.++.. +++|++|++++|. ++.+| .+..+++|++|++++| .++.+|.
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~------------~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~ 212 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDL------------PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPD 212 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCC------------CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCC------------cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCC
Confidence 5667778888887764 4444321 2688999998886 44566 5888999999999984 6776664
Q ss_pred CCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccc
Q 038031 400 VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSS 479 (729)
Q Consensus 400 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 479 (729)
. +++|++|++++|. +..+|. + ..+++|++|++++| .+..++. .+++|+.|+++++. ++.+ +..
T Consensus 213 ~--~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~N~-l~~l--~~~----- 275 (454)
T 1jl5_A 213 L--PLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDNY-LTDL--PEL----- 275 (454)
T ss_dssp C--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECCSSC-CSCC--CCC-----
T ss_pred C--cCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCC-cCCcccc--cccccCEEECCCCc-cccc--Ccc-----
Confidence 3 4689999999987 667775 2 78899999999885 4555443 34678888888764 5544 331
Q ss_pred cccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCC
Q 038031 480 SRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEE 559 (729)
Q Consensus 480 ~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~ 559 (729)
++ +|+.|+++++ .++. ++ .++++|++| +++++ .+..++. -.++|++|++++|++..++..
T Consensus 276 ---~~--~L~~L~ls~N-~l~~-l~--~~~~~L~~L-------~l~~N-~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~ 335 (454)
T 1jl5_A 276 ---PQ--SLTFLDVSEN-IFSG-LS--ELPPNLYYL-------NASSN-EIRSLCD---LPPSLEELNVSNNKLIELPAL 335 (454)
T ss_dssp ---CT--TCCEEECCSS-CCSE-ES--CCCTTCCEE-------ECCSS-CCSEECC---CCTTCCEEECCSSCCSCCCCC
T ss_pred ---cC--cCCEEECcCC-ccCc-cc--CcCCcCCEE-------ECcCC-cCCcccC---CcCcCCEEECCCCcccccccc
Confidence 23 7888888874 2333 22 122445555 33332 2222221 013555566665555554422
Q ss_pred CCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCc
Q 038031 560 DGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNL 639 (729)
Q Consensus 560 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 639 (729)
+++|++|++++|.+.. ++ . .+++|++|++++|. +..+|. .+..+..|.. ++..
T Consensus 336 ---~~~L~~L~L~~N~l~~-lp-----~--~l~~L~~L~L~~N~----l~~l~~----------ip~~l~~L~~--n~~~ 388 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLAE-VP-----E--LPQNLKQLHVEYNP----LREFPD----------IPESVEDLRM--NSHL 388 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CC-----C--CCTTCCEEECCSSC----CSSCCC----------CCTTCCEEEC--CC--
T ss_pred ---CCcCCEEECCCCcccc-cc-----c--hhhhccEEECCCCC----CCcCCC----------ChHHHHhhhh--cccc
Confidence 3555555555555442 11 1 24555555555555 333321 1122233221 2233
Q ss_pred ccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCch
Q 038031 640 ERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 640 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~ 685 (729)
..+|. .+++|++|++++| .++.++. .+.+++.|.+.+|..
T Consensus 389 ~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 389 AEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSERV 428 (454)
T ss_dssp ----------------------------------------------
T ss_pred ccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCccc
Confidence 33332 2378888888884 4554433 456778888877754
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-24 Score=244.25 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=97.2
Q ss_pred cCcCCCCCccceEEEccCCCCCCC---CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALPSLE---EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS 610 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~ 610 (729)
|..+..+++|++|++++|++..++ ...+.+++|++|++++|.+....+ ...+..+++|++|++++|.. .+.
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~l~~L~~L~l~~n~l---~~~ 443 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCAWAESILVLNLSSNML---TGS 443 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCCCCTTCCEEECCSSCC---CGG
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC---hhhhcCcccCCEEECCCCCC---Ccc
Confidence 445567788888888888777665 345566888888888887766443 34567788888888888873 233
Q ss_pred ccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC--CCCCccceeeccCCch
Q 038031 611 FPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK--GLPSSLLQLWISGCPL 685 (729)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~ 685 (729)
+|... .++|+.|++++ +.++.+|..+..+++|++|++++ +.++.+|.. ..+++|+.|++++||.
T Consensus 444 ~~~~l---------~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 444 VFRCL---------PPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp GGSSC---------CTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred hhhhh---------cCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 33322 26888888888 57888887777888888888888 467788775 2367888888888875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.9e-24 Score=240.12 Aligned_cols=426 Identities=15% Similarity=0.094 Sum_probs=234.1
Q ss_pred CCCccEEEEccCCCCCcCCCCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCCCCC
Q 038031 122 FSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGV 201 (729)
Q Consensus 122 ~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 201 (729)
+...++++++++. +..+|.- -.++|++|++++|. ++.++...+ ..+++|++|++.++ .++...+.. +
T Consensus 30 ~~~~~~l~ls~~~-L~~ip~~-~~~~L~~L~Ls~N~-i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~----~ 96 (562)
T 3a79_B 30 NELESMVDYSNRN-LTHVPKD-LPPRTKALSLSQNS-ISELRMPDI-----SFLSELRVLRLSHN-RIRSLDFHV----F 96 (562)
T ss_dssp ---CCEEECTTSC-CCSCCTT-SCTTCCEEECCSSC-CCCCCGGGT-----TTCTTCCEEECCSC-CCCEECTTT----T
T ss_pred cCCCcEEEcCCCC-CccCCCC-CCCCcCEEECCCCC-ccccChhhh-----ccCCCccEEECCCC-CCCcCCHHH----h
Confidence 4455888888875 5567641 12789999998874 444443222 22777888888765 333332222 4
Q ss_pred ccCCccceEeeccCccccccCCCCCCCccEEEEEccCCcccccCCCCcccEEEEeCCCCceee--ccccccCcccceeec
Q 038031 202 ERFPKLRELQILRCSKLQGTLPEHLPALQMLAIYKCEKLSISITSLPALCKLVIGGCKKVVLR--SATDHLGLQNSVVCR 279 (729)
Q Consensus 202 ~~~~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~ 279 (729)
..+++|++|+++++. ++ .+|. . .+++|++|++++|...... ...
T Consensus 97 ~~l~~L~~L~Ls~N~-l~-~lp~------------------~--~l~~L~~L~Ls~N~l~~l~~p~~~------------ 142 (562)
T 3a79_B 97 LFNQDLEYLDVSHNR-LQ-NISC------------------C--PMASLRHLDLSFNDFDVLPVCKEF------------ 142 (562)
T ss_dssp TTCTTCCEEECTTSC-CC-EECS------------------C--CCTTCSEEECCSSCCSBCCCCGGG------------
T ss_pred CCCCCCCEEECCCCc-CC-ccCc------------------c--ccccCCEEECCCCCccccCchHhh------------
Confidence 567777777777663 44 4443 1 5677888888888755432 111
Q ss_pred CCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCc--cEEEeccCCCc-cccchhhhHHHHhhhhhcc
Q 038031 280 DTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSL--KRLTIRRCPKI-QSLVVEEEKDQQQQLCELS 356 (729)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L--~~L~l~~c~~l-~~l~~~~~~~~~~~l~~~~ 356 (729)
..+++|+.|++.+.. ++. ..+..+++| +.|+++++... ....+. .+..+ .
T Consensus 143 -------------~~l~~L~~L~L~~n~-l~~------~~~~~l~~L~L~~L~L~~n~l~~~~~~~~----~l~~l---~ 195 (562)
T 3a79_B 143 -------------GNLTKLTFLGLSAAK-FRQ------LDLLPVAHLHLSCILLDLVSYHIKGGETE----SLQIP---N 195 (562)
T ss_dssp -------------GGCTTCCEEEEECSB-CCT------TTTGGGTTSCEEEEEEEESSCCCCSSSCC----EEEEC---C
T ss_pred -------------cccCcccEEecCCCc-ccc------CchhhhhhceeeEEEeecccccccccCcc----ccccc---C
Confidence 156788888887743 222 123444555 88888776530 111111 01000 0
Q ss_pred CcccEEEeeecCCcccccc-cccCCCCccEEEeccCCC-c----------ccC---------------------CCCCCc
Q 038031 357 CRLEYLGLLYCEGLVKLPQ-SSLSLCSLREIEIYNCSS-L----------VSF---------------------PEVALP 403 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~-l----------~~l---------------------~~~~~~ 403 (729)
...-.+++++|.....++. .+..+++|+.++++++.. . ... +.....
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 0111445555554443332 455677788888877420 0 000 000012
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecCC--CcccccccC---C--CCCCCeEEEecCCCCcccccccCcc
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCC--SLRYIVEVQ---L--PPSLKQLTIWRCDNIRTLTVEEGIQ 476 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~~---~--~~~L~~L~l~~~~~l~~l~~~~~~~ 476 (729)
++|++|++++|.....+|...+.....+|+.|.+.++. .+ .++... . ..+++.|++.++. +..+.++
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~---- 349 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP-FIHMVCP---- 349 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCCC----
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC-cccccCc----
Confidence 35666666666533344443321111333333332211 11 111000 0 1346777776664 2222110
Q ss_pred ccccccccccccceEEecCCCCccccccC-CCCccccccccccccccccccCcccc---cccCcCCCCCccceEEEccCC
Q 038031 477 SSSSRRYTSSLLEKLEIWDCPSLTCIFSK-NELPATLESLEVGNLPPSLKSLSRLE---ALPKGLHNLSCLQELTIIGGA 552 (729)
Q Consensus 477 ~~~~~~l~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~~~~~~~~l~~~~~l~---~l~~~~~~l~~L~~L~l~~~~ 552 (729)
. .++ +|+.|+++++. ++...+. ..-.++|++| ++.++ ++. .+|..+..+++|++|++++|+
T Consensus 350 ~----~l~--~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-------~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 P----SPS--SFTFLNFTQNV-FTDSVFQGCSTLKRLQTL-------ILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp S----SCC--CCCEEECCSSC-CCTTTTTTCCSCSSCCEE-------ECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred c----CCC--CceEEECCCCc-cccchhhhhcccCCCCEE-------ECCCC-CcCCcccchhhhcCCCCCCEEECCCCc
Confidence 1 445 78888887743 3331222 1223567777 55553 333 334456778888888888887
Q ss_pred CCC-CC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCC-CCcceeeeccCCCccccccccccccccCCccCCCCCcc
Q 038031 553 LPS-LE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRF-SSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLT 629 (729)
Q Consensus 553 i~~-l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l-~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~ 629 (729)
+.. ++ .....+++|++|++++|.+....+ ..+ ++|++|++++|. +..+|... ..+++|+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~l~~~L~~L~L~~N~----l~~ip~~~-------~~l~~L~ 476 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVF-------RCLPPKVKVLDLHNNR----IMSIPKDV-------THLQALQ 476 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-------SSCCTTCSEEECCSSC----CCCCCTTT-------TSSCCCS
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchh-------hhhcCcCCEEECCCCc----CcccChhh-------cCCCCCC
Confidence 776 66 335556788888888887765544 223 578888888887 66777655 2678888
Q ss_pred eEEcccCCCccccccc-CCCCCCccEEeecCCC
Q 038031 630 SLSISRFPNLERLSSS-IVDLQNLTELHLWDCP 661 (729)
Q Consensus 630 ~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 661 (729)
.|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 477 ~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 477 ELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 888888 667778755 7778888888888864
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2e-24 Score=246.92 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=84.1
Q ss_pred cCcCCCCCccceEEEccCCCC-C-CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALP-S-LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~-~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
+..+..++.|+.|++++|.+. . ++.....+++|++|+|++|.+....+ ..|.++++|++|+|++|. +..+
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~----~~f~~l~~L~~L~Ls~N~----l~~l 533 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNN----FFSL 533 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSC----CCBC
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh----HHHcCCCCCCEEECCCCc----CCCC
Confidence 445677888889999888533 2 23556667889999999988776554 367888999999999988 6666
Q ss_pred cccccccCCccCCCCCcceEEcccCCCccccc-ccCCCC-CCccEEeecCCC
Q 038031 612 PLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDL-QNLTELHLWDCP 661 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l-~~L~~L~l~~c~ 661 (729)
+... +..+++|++|++++ +.++.++ ..+..+ ++|++|++++|+
T Consensus 534 ~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 534 DTFP------YKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCGG------GTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ChhH------HhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 6532 25678999999998 5666665 667777 689999999864
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=4.5e-24 Score=231.66 Aligned_cols=301 Identities=26% Similarity=0.295 Sum_probs=179.9
Q ss_pred CCccEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCCCCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC 177 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 177 (729)
.+++.|+++++....+|.. .++|++|++++|. +..+|. .+++|++|++++| .++.++. ..++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~-----~~~L~~L~l~~n~-l~~lp~--~~~~L~~L~l~~n-~l~~l~~---------~~~~ 132 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL-----PPHLESLVASCNS-LTELPE--LPQSLKSLLVDNN-NLKALSD---------LPPL 132 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC-----CTTCSEEECCSSC-CSSCCC--CCTTCCEEECCSS-CCSCCCS---------CCTT
T ss_pred cCCCEEEecCCccccCCCC-----cCCCCEEEccCCc-CCcccc--ccCCCcEEECCCC-ccCcccC---------CCCC
Confidence 3568899988887777752 4789999998876 444664 3478999999887 3433321 1368
Q ss_pred cceeeecccccccccccCCCCCCCccCCccceEeeccCccccccCCCCCCCccEEEEEccCCcccccCCCCcccEEEEeC
Q 038031 178 LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQGTLPEHLPALQMLAIYKCEKLSISITSLPALCKLVIGG 257 (729)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~ 257 (729)
|++|++.++ .++.+. .+..+++|++|+++++ .++ .+|...++|+.|++ ++
T Consensus 133 L~~L~L~~n-~l~~lp------~~~~l~~L~~L~l~~N-~l~-~lp~~~~~L~~L~L---------------------~~ 182 (454)
T 1jl5_A 133 LEYLGVSNN-QLEKLP------ELQNSSFLKIIDVDNN-SLK-KLPDLPPSLEFIAA---------------------GN 182 (454)
T ss_dssp CCEEECCSS-CCSSCC------CCTTCTTCCEEECCSS-CCS-CCCCCCTTCCEEEC---------------------CS
T ss_pred CCEEECcCC-CCCCCc------ccCCCCCCCEEECCCC-cCc-ccCCCcccccEEEC---------------------cC
Confidence 888888876 333322 1677888888888877 455 46654444555544 44
Q ss_pred CCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCc
Q 038031 258 CKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKI 337 (729)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l 337 (729)
|.....+ .++.+++|+.|+++++. +
T Consensus 183 n~l~~l~------------------------------------------------------~~~~l~~L~~L~l~~N~-l 207 (454)
T 1jl5_A 183 NQLEELP------------------------------------------------------ELQNLPFLTAIYADNNS-L 207 (454)
T ss_dssp SCCSSCC------------------------------------------------------CCTTCTTCCEEECCSSC-C
T ss_pred CcCCcCc------------------------------------------------------cccCCCCCCEEECCCCc-C
Confidence 4322111 01233444444444433 2
Q ss_pred cccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCC
Q 038031 338 QSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDAL 417 (729)
Q Consensus 338 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l 417 (729)
+.++. .+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++. .+++|++|++++|. +
T Consensus 208 ~~l~~------------~~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~--~~~~L~~L~l~~N~-l 269 (454)
T 1jl5_A 208 KKLPD------------LPLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADN-NLLKTLPD--LPPSLEALNVRDNY-L 269 (454)
T ss_dssp SSCCC------------CCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS-SCCSSCCS--CCTTCCEEECCSSC-C
T ss_pred CcCCC------------CcCcccEEECcCCc-CCccc-ccCCCCCCCEEECCC-CcCCcccc--cccccCEEECCCCc-c
Confidence 22211 11467777777775 34566 367778888888877 45666653 34678888888776 5
Q ss_pred CccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCC
Q 038031 418 KSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCP 497 (729)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~ 497 (729)
..+|.. .++|++|++++| .+..++ ..+++|+.|+++++. ++.+ +. ..+ +|+.|+++++
T Consensus 270 ~~l~~~-----~~~L~~L~ls~N-~l~~l~--~~~~~L~~L~l~~N~-l~~i--~~--------~~~--~L~~L~Ls~N- 327 (454)
T 1jl5_A 270 TDLPEL-----PQSLTFLDVSEN-IFSGLS--ELPPNLYYLNASSNE-IRSL--CD--------LPP--SLEELNVSNN- 327 (454)
T ss_dssp SCCCCC-----CTTCCEEECCSS-CCSEES--CCCTTCCEEECCSSC-CSEE--CC--------CCT--TCCEEECCSS-
T ss_pred cccCcc-----cCcCCEEECcCC-ccCccc--CcCCcCCEEECcCCc-CCcc--cC--------CcC--cCCEEECCCC-
Confidence 555532 367778888774 344332 234567777766653 3333 11 012 5666666552
Q ss_pred CccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhh
Q 038031 498 SLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEI 577 (729)
Q Consensus 498 ~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~ 577 (729)
++..+|.. +++|++|++++|++..++. .+++|++|++++|++.
T Consensus 328 -------------------------------~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 328 -------------------------------KLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp -------------------------------CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred -------------------------------cccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCC
Confidence 22233322 4677888888887777665 4577888888887776
Q ss_pred h
Q 038031 578 C 578 (729)
Q Consensus 578 ~ 578 (729)
+
T Consensus 371 ~ 371 (454)
T 1jl5_A 371 E 371 (454)
T ss_dssp S
T ss_pred c
Confidence 5
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=6.5e-23 Score=224.25 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=93.7
Q ss_pred CCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccccc
Q 038031 540 LSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRL 618 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 618 (729)
.++|++|++++|.+..+. ...+.+++|++|++++|.+....+ ..+..+++|++|++++|. +..++...
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~~--- 342 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWGLTHLLKLNLSQNF----LGSIDSRM--- 342 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSC----CCEECGGG---
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hHhcCcccCCEEECCCCc----cCCcChhH---
Confidence 467888888888777654 456666888888888887776543 256778888888888887 55553322
Q ss_pred CCccCCCCCcceEEcccCCCcccc-cccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 619 GTALPLPASLTSLSISRFPNLERL-SSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 619 ~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
+..+++|++|++++ +.++.+ |..+..+++|++|++++ +.++.+|...+ +++|++|++++|+.
T Consensus 343 ---~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 343 ---FENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ---GTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---hcCcccCCEEECCC-CcccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCc
Confidence 24678888888888 456655 56788888888888888 46777776533 67888888888864
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-23 Score=219.20 Aligned_cols=310 Identities=15% Similarity=0.098 Sum_probs=215.1
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+++++.|.+.++. ++.++. ..+..+++|+.|+++++. ++.+.... +..+ ++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~---~~~~~l~~L~~L~L~~n~-i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPA---ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECT---HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCc-hhhCCh---hHhcccccCcEEECCCCc-ccccChhh----ccCC----CCcCEEECCCCCCCcCC
Confidence 46778888887743 455555 556778888888888765 55444321 2222 78888888887755445
Q ss_pred cccccCCCCccEEEeccCCCcccCCCCC--CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC
Q 038031 374 PQSSLSLCSLREIEIYNCSSLVSFPEVA--LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL 451 (729)
Q Consensus 374 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 451 (729)
+..+..+++|++|++++ +.++.++... .+++|++|++++|. +..++...+ ..+++|++|+++++ .++.++...+
T Consensus 110 ~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~l 185 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDLSLI 185 (390)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSS-CCSBCCGGGC
T ss_pred HHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCC-cCCccccccc
Confidence 55677888888888887 4677777643 37788888888877 555544433 67788888888774 4444433233
Q ss_pred CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccc
Q 038031 452 PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLE 531 (729)
Q Consensus 452 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~ 531 (729)
++|+.|++.++. ++.+. ..+ +|+.|+++++ .+.
T Consensus 186 -~~L~~L~l~~n~-l~~~~-----------~~~--~L~~L~l~~n--------------------------------~l~ 218 (390)
T 3o6n_A 186 -PSLFHANVSYNL-LSTLA-----------IPI--AVEELDASHN--------------------------------SIN 218 (390)
T ss_dssp -TTCSEEECCSSC-CSEEE-----------CCS--SCSEEECCSS--------------------------------CCC
T ss_pred -cccceeeccccc-ccccC-----------CCC--cceEEECCCC--------------------------------eee
Confidence 346666665542 33321 112 5555555552 223
Q ss_pred cccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 532 ALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 532 ~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
.+|.. ..++|+.|++++|.+..++ ....+++|++|++++|.+....+ ..+..+++|++|++++|. +..+
T Consensus 219 ~~~~~--~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~----l~~~ 287 (390)
T 3o6n_A 219 VVRGP--VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNR----LVAL 287 (390)
T ss_dssp EEECC--CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSC----CCEE
T ss_pred ecccc--ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCc----Cccc
Confidence 33322 2478999999999888764 44556899999999998876544 367889999999999998 6677
Q ss_pred cccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCchhHH
Q 038031 612 PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~l~~ 688 (729)
|... ..+++|++|++++ +.++.+|..+..+++|++|++++| .++.++. ..+++|+.|++++|+.-.+
T Consensus 288 ~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 288 NLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred Cccc-------CCCCCCCEEECCC-CcceecCccccccCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCccch
Confidence 6544 3679999999999 578899888888999999999995 6777764 4578999999999986544
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2e-22 Score=220.69 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCccEEEEeeeCCCCCCcccCCCCCCCccEEEEccCCCCCcCCCCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCC
Q 038031 98 KNLDQFCVCGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPC 177 (729)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 177 (729)
++++.|+++++....+|. + ..+++|++|++++|. +..++.++.+++|++|++++|. +..++. + ..+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~--~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-V--EYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITP-L------ANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-G--GGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-G------TTCTT
T ss_pred ccccEEecCCCCCccCcc-h--hhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCc-cccChh-h------cCCCC
Confidence 456666666655555553 2 245666666666654 3444446666666666666653 222221 1 11555
Q ss_pred cceeeecccccccccccCCCCCCCccCCccceEeeccC
Q 038031 178 LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRC 215 (729)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (729)
|++|++.++ .++.... +..+++|++|++++|
T Consensus 114 L~~L~L~~n-~l~~~~~------~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 114 LTGLTLFNN-QITDIDP------LKNLTNLNRLELSSN 144 (466)
T ss_dssp CCEEECCSS-CCCCCGG------GTTCTTCSEEEEEEE
T ss_pred CCEEECCCC-CCCCChH------HcCCCCCCEEECCCC
Confidence 555555554 2222211 345556666666554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.1e-22 Score=218.62 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=83.9
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
++|++|++++|.. +.+ .+..+++|++|++++ +.++.+| ...+++|++|++++|. +..++. ..+++|+.|+
T Consensus 191 ~~L~~L~l~~N~l-~~~--~l~~l~~L~~L~Ls~-N~l~~ip-~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~ 260 (457)
T 3bz5_A 191 KLLNRLNCDTNNI-TKL--DLNQNIQLTFLDCSS-NKLTEID-VTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLH 260 (457)
T ss_dssp TTCCEEECCSSCC-SCC--CCTTCTTCSEEECCS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEE
T ss_pred CCCCEEECcCCcC-Cee--ccccCCCCCEEECcC-CcccccC-ccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEe
Confidence 5666666666653 223 255666666666666 3555555 4445666666666665 444442 4456666666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
++++ +|+.|++++|..+..+ +.. .++ +|+.|++++|..+.. ++.
T Consensus 261 l~~n-------------~L~~L~l~~n~~~~~~--~~~-------~l~--~L~~L~Ls~n~~l~~-l~~----------- 304 (457)
T 3bz5_A 261 CIQT-------------DLLEIDLTHNTQLIYF--QAE-------GCR--KIKELDVTHNTQLYL-LDC----------- 304 (457)
T ss_dssp CTTC-------------CCSCCCCTTCTTCCEE--ECT-------TCT--TCCCCCCTTCTTCCE-EEC-----------
T ss_pred ccCC-------------CCCEEECCCCccCCcc--ccc-------ccc--cCCEEECCCCcccce-ecc-----------
Confidence 5542 2444555555544444 211 333 666666666654444 221
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchh
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNME 576 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~ 576 (729)
....++.+ .+..+++|++|++++|+++.++ .+.+++|++|++++|.+
T Consensus 305 ---------~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 305 ---------QAAGITEL--DLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp ---------TTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ---------CCCcceEe--chhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence 01122222 1334456666666666555542 44445666666665544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=8.2e-23 Score=214.89 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=176.4
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
++|++|++++|. ++.++. +..+++|++|++++| .++.++....+++|++|++++|. +..++.. ..+++|++|+
T Consensus 66 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEE
T ss_pred CCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchhh---ccCCceeEEE
Confidence 556666665554 233333 555566666666553 45555444445566666666555 4444431 5556666666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
+++|.....++.....++|+.|++.++. ++.+ +. +. .++ +|+.|++++| .+.. ++.....++|+.+
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~--~~----~l~--~L~~L~l~~n-~l~~-~~~~~~l~~L~~L- 204 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESK-VKDV--TP--IA----NLT--DLYSLSLNYN-QIED-ISPLASLTSLHYF- 204 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCC--GG--GG----GCT--TCSEEECTTS-CCCC-CGGGGGCTTCCEE-
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCC-cCCc--hh--hc----cCC--CCCEEEccCC-cccc-cccccCCCcccee-
Confidence 6655544444433333446666655553 2222 11 11 344 6666666654 2333 2222222445555
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcce
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRH 596 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~ 596 (729)
.+.++ .+..++. +..+++|++|++++|.+..+++ ...+++|++|++++|.+... ..+..+++|++
T Consensus 205 ------~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~ 269 (347)
T 4fmz_A 205 ------TAYVN-QITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKM 269 (347)
T ss_dssp ------ECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCE
T ss_pred ------ecccC-CCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCE
Confidence 44442 3333332 6788999999999998888876 66779999999999987763 24688999999
Q ss_pred eeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccc
Q 038031 597 LTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLL 676 (729)
Q Consensus 597 L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 676 (729)
|++++|. +..++.. ..+++|+.|++++|......+..+..+++|++|++++|+ ++.++....+++|+
T Consensus 270 L~l~~n~----l~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 270 LNVGSNQ----ISDISVL--------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMD 336 (347)
T ss_dssp EECCSSC----CCCCGGG--------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCS
T ss_pred EEccCCc----cCCChhh--------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccc
Confidence 9999998 6666532 368999999999964333444778899999999999965 67666545588999
Q ss_pred eeeccCCch
Q 038031 677 QLWISGCPL 685 (729)
Q Consensus 677 ~L~l~~n~~ 685 (729)
+|++++|+.
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 999999974
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.8e-22 Score=220.64 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=95.7
Q ss_pred ccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 533 LPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 533 l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
.|..+..+++|++|++++|++..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~ 362 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS----RMFENLDKLEVLDLSYNH----IRAL 362 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG----GGGTTCTTCCEEECCSSC----CCEE
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh----hHhcCcccCCEEECCCCc----cccc
Confidence 3556788899999999999988775 466677999999999998866543 367889999999999998 6555
Q ss_pred -cccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCC
Q 038031 612 -PLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 612 -~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
|... ..+++|++|++++ +.++.+| ..+..+++|++|++++|+.-...|
T Consensus 363 ~~~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 363 GDQSF-------LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTT-------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Chhhc-------cccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 3333 4789999999999 6788888 466899999999999976444444
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.3e-22 Score=215.52 Aligned_cols=357 Identities=15% Similarity=0.110 Sum_probs=227.6
Q ss_pred CCCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCCCCCccCCccceEeeccCccccc
Q 038031 141 SVGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELQILRCSKLQG 220 (729)
Q Consensus 141 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 220 (729)
.++.+++|++|++++| .++.++ .+ ..+++|++|++.++. ++.+. ++.+++|++|++++|. +++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~-~l------~~l~~L~~L~Ls~n~-l~~~~-------~~~l~~L~~L~Ls~N~-l~~ 99 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT-GI------EKLTGLTKLICTSNN-ITTLD-------LSQNTNLTYLACDSNK-LTN 99 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT-TG------GGCTTCSEEECCSSC-CSCCC-------CTTCTTCSEEECCSSC-CSC
T ss_pred ChhHcCCCCEEEccCC-CcccCh-hh------cccCCCCEEEccCCc-CCeEc-------cccCCCCCEEECcCCC-Cce
Confidence 4667899999999987 444443 22 237888888888763 33321 4667788888887763 442
Q ss_pred cCCCCCCCccEEEEEccCCcccccCCCCcccEEEEeCCCCceeeccccccCcccceeecCCCCcccccCCCCCCCCCccE
Q 038031 221 TLPEHLPALQMLAIYKCEKLSISITSLPALCKLVIGGCKKVVLRSATDHLGLQNSVVCRDTSNQVFLAGPLKPRIPKLEE 300 (729)
Q Consensus 221 ~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 300 (729)
.-...+++|+.|++++|..-...+..+ ++|+.
T Consensus 100 ~~~~~l~~L~~L~L~~N~l~~l~~~~l------------------------------------------------~~L~~ 131 (457)
T 3bz5_A 100 LDVTPLTKLTYLNCDTNKLTKLDVSQN------------------------------------------------PLLTY 131 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCCCTTC------------------------------------------------TTCCE
T ss_pred eecCCCCcCCEEECCCCcCCeecCCCC------------------------------------------------CcCCE
Confidence 111234455555554443221123334 44444
Q ss_pred EEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCC
Q 038031 301 LEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSL 380 (729)
Q Consensus 301 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l 380 (729)
|.+.++. ++.++ ++.+++|+.|++++|..+..+... . +++|++|++++|. ++.+| +..+
T Consensus 132 L~l~~N~-l~~l~------l~~l~~L~~L~l~~n~~~~~~~~~-------~----l~~L~~L~ls~n~-l~~l~--l~~l 190 (457)
T 3bz5_A 132 LNCARNT-LTEID------VSHNTQLTELDCHLNKKITKLDVT-------P----QTQLTTLDCSFNK-ITELD--VSQN 190 (457)
T ss_dssp EECTTSC-CSCCC------CTTCTTCCEEECTTCSCCCCCCCT-------T----CTTCCEEECCSSC-CCCCC--CTTC
T ss_pred EECCCCc-cceec------cccCCcCCEEECCCCCcccccccc-------c----CCcCCEEECCCCc-cceec--cccC
Confidence 4444432 11111 356677888888877666655322 1 2788888888886 44455 7788
Q ss_pred CCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEE
Q 038031 381 CSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTI 460 (729)
Q Consensus 381 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 460 (729)
++|+.|++++ +.++.++ ...+++|++|++++|. ++.+| . ..+++|+.|+++++ .+..++...+ ++|+.|++
T Consensus 191 ~~L~~L~l~~-N~l~~~~-l~~l~~L~~L~Ls~N~-l~~ip--~--~~l~~L~~L~l~~N-~l~~~~~~~l-~~L~~L~l 261 (457)
T 3bz5_A 191 KLLNRLNCDT-NNITKLD-LNQNIQLTFLDCSSNK-LTEID--V--TPLTQLTYFDCSVN-PLTELDVSTL-SKLTTLHC 261 (457)
T ss_dssp TTCCEEECCS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCC--C--TTCTTCSEEECCSS-CCSCCCCTTC-TTCCEEEC
T ss_pred CCCCEEECcC-CcCCeec-cccCCCCCEEECcCCc-ccccC--c--cccCCCCEEEeeCC-cCCCcCHHHC-CCCCEEec
Confidence 8999999988 4677764 5557899999999887 66676 2 77889999999885 4555443332 23555543
Q ss_pred ecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCC
Q 038031 461 WRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNL 540 (729)
Q Consensus 461 ~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l 540 (729)
++ . +|+.|++++|..+.. ++...+ ++|+.| ++++|..+..+|. ..
T Consensus 262 ~~---------------------n--~L~~L~l~~n~~~~~-~~~~~l-~~L~~L-------~Ls~n~~l~~l~~---~~ 306 (457)
T 3bz5_A 262 IQ---------------------T--DLLEIDLTHNTQLIY-FQAEGC-RKIKEL-------DVTHNTQLYLLDC---QA 306 (457)
T ss_dssp TT---------------------C--CCSCCCCTTCTTCCE-EECTTC-TTCCCC-------CCTTCTTCCEEEC---TT
T ss_pred cC---------------------C--CCCEEECCCCccCCc-cccccc-ccCCEE-------ECCCCcccceecc---CC
Confidence 22 1 566677777665555 554333 667888 7777777777763 44
Q ss_pred CccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCC
Q 038031 541 SCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGT 620 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~ 620 (729)
++|+.|++++| ++|++|++++|.+.+. .+..+++|+.|++++|. +..+
T Consensus 307 ~~L~~L~l~~~------------~~L~~L~L~~N~l~~l-------~l~~l~~L~~L~l~~N~----l~~l--------- 354 (457)
T 3bz5_A 307 AGITELDLSQN------------PKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVNAH----IQDF--------- 354 (457)
T ss_dssp CCCSCCCCTTC------------TTCCEEECTTCCCSCC-------CCTTCTTCSEEECCSSC----CCBC---------
T ss_pred CcceEechhhc------------ccCCEEECCCCccccc-------ccccCCcCcEEECCCCC----CCCc---------
Confidence 66677777766 7889999999988763 36788999999999988 4333
Q ss_pred ccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC
Q 038031 621 ALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK 669 (729)
Q Consensus 621 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 669 (729)
+.|..|++++ +.+... ..+..|..+++++|+.-..+|..
T Consensus 355 -----~~L~~L~l~~-n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 355 -----SSVGKIPALN-NNFEAE----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -----TTGGGSSGGG-TSEEEE----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -----cccccccccC-CcEEec----ceeeecCccccccCcEEEEcChh
Confidence 4556666666 444432 34556777788886655566653
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-21 Score=213.62 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
+..+++|++|++++|.+..+++ ...+++|++|++++|.+.... .+..+++|++|++++|. +..++..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n~----l~~~~~~-- 327 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNN----ISDISPV-- 327 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSC----CSCCGGG--
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCCc----CCCchhh--
Confidence 4556666666666666655554 344466666666666555432 24556666666666665 3333321
Q ss_pred ccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCc
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCP 684 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~ 684 (729)
..+++|+.|++++ +.++.+ ..+..+++|++|++++|+ ++.++....+++|+.|++++|+
T Consensus 328 ------~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 328 ------SSLTKLQRLFFYN-NKVSDV-SSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp ------GGCTTCCEEECCS-SCCCCC-GGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE
T ss_pred ------ccCccCCEeECCC-CccCCc-hhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc
Confidence 2456666666666 345554 345566666666666643 3333333335566666666664
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.4e-22 Score=223.35 Aligned_cols=310 Identities=15% Similarity=0.100 Sum_probs=202.9
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+.+++.+.+.++ .+..++. ..+..+++|+.|+++++. ++.+.+.. +..+ ++|++|++++|......
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~---~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPA---ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSC-EESEECT---HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCC-CCCCcCH---HHHccCCCCcEEECCCCC-CCCCChHH----hcCC----CCCCEEECCCCcCCCCC
Confidence 3566777777664 2344544 556777778888887765 44443321 2222 67777777777754444
Q ss_pred cccccCCCCccEEEeccCCCcccCCCCC--CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC
Q 038031 374 PQSSLSLCSLREIEIYNCSSLVSFPEVA--LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL 451 (729)
Q Consensus 374 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 451 (729)
|..++.+++|++|++++ +.++.+|... .+++|++|++++|. +..++...+ ..+++|++|++++| .+..++...+
T Consensus 116 ~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~l 191 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDLSLI 191 (597)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCGGGC
T ss_pred HHHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcChhhh
Confidence 55567777777777777 3666666543 36777777777776 444444333 66777777777764 3444433333
Q ss_pred CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccc
Q 038031 452 PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLE 531 (729)
Q Consensus 452 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~ 531 (729)
++|+.|+++++. ++.+. ..+ +|+.|+++++ .+.
T Consensus 192 -~~L~~L~l~~n~-l~~l~-----------~~~--~L~~L~ls~n--------------------------------~l~ 224 (597)
T 3oja_B 192 -PSLFHANVSYNL-LSTLA-----------IPI--AVEELDASHN--------------------------------SIN 224 (597)
T ss_dssp -TTCSEEECCSSC-CSEEE-----------CCT--TCSEEECCSS--------------------------------CCC
T ss_pred -hhhhhhhcccCc-ccccc-----------CCc--hhheeeccCC--------------------------------ccc
Confidence 336666655542 33221 112 5555555552 222
Q ss_pred cccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 532 ALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 532 ~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
.++..+ .++|+.|++++|.+...+ ..+.+++|++|++++|.+....+. .+..+++|+.|++++|. +..+
T Consensus 225 ~~~~~~--~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~----l~~l 293 (597)
T 3oja_B 225 VVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNR----LVAL 293 (597)
T ss_dssp EEECSC--CSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECTTSC----CCEE
T ss_pred cccccc--CCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHH----HhcCccCCCEEECCCCC----CCCC
Confidence 333222 367888899988777653 445568899999999888766543 67888999999999988 6666
Q ss_pred cccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCchhHH
Q 038031 612 PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~l~~ 688 (729)
|... ..+++|+.|++++ +.+..+|..+..+++|++|++++| .++.++. ..+++|+.|++++||.-.+
T Consensus 294 ~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 294 NLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred Cccc-------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCCCCCh
Confidence 6554 3578999999999 567788877888999999999995 5677764 3467899999999986443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.7e-21 Score=204.90 Aligned_cols=280 Identities=18% Similarity=0.185 Sum_probs=172.7
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+++|+.|++.++. ++.++. +..+++|+.|++++|. ++.++ .+..+ ++|++|++++|.. +.+
T Consensus 64 ~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n~-i~~~~------~~~~l----~~L~~L~l~~n~i-~~~ 125 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTNK-ITDIS------ALQNL----TNLRELYLNEDNI-SDI 125 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSC-CCCCG------GGTTC----TTCSEEECTTSCC-CCC
T ss_pred hcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCCc-ccCch------HHcCC----CcCCEEECcCCcc-cCc
Confidence 45666666666652 333322 5566666666666653 43331 12222 6666666666653 333
Q ss_pred cccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCC
Q 038031 374 PQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPP 453 (729)
Q Consensus 374 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 453 (729)
+. +..+++|++|++++|..+..++....+++|++|++++|. +..++.. ..+++|++|++++| .+..++.....+
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~l~ 199 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPI---ANLTDLYSLSLNYN-QIEDISPLASLT 199 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---GGCTTCSEEECTTS-CCCCCGGGGGCT
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhh---ccCCCCCEEEccCC-cccccccccCCC
Confidence 32 556666666666666555555554456666666666665 4444432 55666666666664 333333222233
Q ss_pred CCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccc
Q 038031 454 SLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEAL 533 (729)
Q Consensus 454 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l 533 (729)
+|+.+++.++. ++.+ +. +. .++ +|+.|++++| .+..+
T Consensus 200 ~L~~L~l~~n~-l~~~--~~--~~----~~~--~L~~L~l~~n--------------------------------~l~~~ 236 (347)
T 4fmz_A 200 SLHYFTAYVNQ-ITDI--TP--VA----NMT--RLNSLKIGNN--------------------------------KITDL 236 (347)
T ss_dssp TCCEEECCSSC-CCCC--GG--GG----GCT--TCCEEECCSS--------------------------------CCCCC
T ss_pred ccceeecccCC-CCCC--ch--hh----cCC--cCCEEEccCC--------------------------------ccCCC
Confidence 45555555542 2222 11 11 233 5555555543 23333
Q ss_pred cCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPL 613 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~ 613 (729)
+. +..+++|++|++++|.+..++ ....+++|++|++++|.+... ..+..+++|++|++++|. +...+.
T Consensus 237 ~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~----l~~~~~ 304 (347)
T 4fmz_A 237 SP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQ----LGNEDM 304 (347)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSC----CCGGGH
T ss_pred cc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCc----CCCcCh
Confidence 33 678899999999999888875 355668999999999987764 246789999999999998 544443
Q ss_pred -cccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCC
Q 038031 614 -EDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 614 -~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
.. ..+++|+.|++++| .++.++. +..+++|++|++++|+
T Consensus 305 ~~l-------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVI-------GGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH-------HTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hHh-------hccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 23 36899999999995 5777655 8889999999999964
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.8e-21 Score=210.60 Aligned_cols=124 Identities=19% Similarity=0.120 Sum_probs=75.7
Q ss_pred ccccCcccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeecc
Q 038031 523 SLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGG 601 (729)
Q Consensus 523 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 601 (729)
.+.++..+..+|.......+|++|++++|.+..++ .....+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVG 281 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCS
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCC
Confidence 44444444444444444557777777777766666 334555777777777776654432 3566777777777777
Q ss_pred CCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 602 CDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 602 n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
|. +..++.. ++..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 282 n~----l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 282 GQ----LAVVEPY------AFRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SC----CSEECTT------TBTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred Cc----cceECHH------HhcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 76 4444321 124567777777777 4666665 455667777777777754
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=6.7e-21 Score=209.44 Aligned_cols=293 Identities=19% Similarity=0.155 Sum_probs=202.8
Q ss_pred CCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCC--
Q 038031 324 CSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVA-- 401 (729)
Q Consensus 324 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-- 401 (729)
+.++.|+++++. ++.+.... +..+ ++|++|++++|......|..+..+++|++|++++ +.++.++...
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDE----FASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTT----TTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSST
T ss_pred CCCcEEECCCCc-cceECHhH----ccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCccccc
Confidence 577888888764 55544321 2222 7888888888765555566777888888888887 4677776543
Q ss_pred CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC--CCCCCCeEEEecCCCCcccccccCccccc
Q 038031 402 LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ--LPPSLKQLTIWRCDNIRTLTVEEGIQSSS 479 (729)
Q Consensus 402 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 479 (729)
.+++|++|++++|. +..++...+ ..+++|++|+++++ .+..+.... -.++|+.|++.++. ++.+ +...+.
T Consensus 102 ~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~-- 173 (477)
T 2id5_A 102 GLSNLTKLDISENK-IVILLDYMF-QDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSI--PTEALS-- 173 (477)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSC--CHHHHT--
T ss_pred CCCCCCEEECCCCc-cccCChhHc-cccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-Cccc--ChhHhc--
Confidence 36788888888877 444433333 67788888888774 444443322 22457777777763 4444 333333
Q ss_pred cccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCC-CCCC
Q 038031 480 SRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALP-SLEE 558 (729)
Q Consensus 480 ~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~-~l~~ 558 (729)
.++ +|+.|+++++. +.. ..+..+..+++|++|++++|.+. .++.
T Consensus 174 --~l~--~L~~L~l~~n~-i~~------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 174 --HLH--GLIVLRLRHLN-INA------------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp --TCT--TCCEEEEESCC-CCE------------------------------ECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred --ccC--CCcEEeCCCCc-CcE------------------------------eChhhcccCcccceeeCCCCccccccCc
Confidence 455 67777766631 111 11235678899999999998433 4444
Q ss_pred CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCC
Q 038031 559 EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPN 638 (729)
Q Consensus 559 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 638 (729)
......+|++|++++|.+..... ..+..+++|++|++++|. +..++... +..+++|+.|++++ +.
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~L~~-n~ 283 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNP----ISTIEGSM------LHELLRLQEIQLVG-GQ 283 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSC----CCEECTTS------CTTCTTCCEEECCS-SC
T ss_pred ccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCc----CCccChhh------ccccccCCEEECCC-Cc
Confidence 44445699999999998875432 357889999999999998 66666532 35789999999999 56
Q ss_pred cccc-cccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 639 LERL-SSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 639 l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
++.+ |..+..+++|++|++++ +.++.++...+ +++|++|++++||.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred cceECHHHhcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCCc
Confidence 6666 57889999999999999 57888887543 68999999999985
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=9.6e-21 Score=202.39 Aligned_cols=280 Identities=17% Similarity=0.144 Sum_probs=205.7
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+++|+.|++.++. ++.++. ..+..+++|+.|+++++. ++.+.+.. +..+ ++|++|++++|.. +.+
T Consensus 67 ~l~~L~~L~L~~n~-i~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l-~~l 132 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ-IEEIDT---YAFAYAHTIQKLYMGFNA-IRYLPPHV----FQNV----PLLTVLVLERNDL-SSL 132 (390)
T ss_dssp HCCCCSEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC-CCCCCTTT----TTTC----TTCCEEECCSSCC-CCC
T ss_pred ccccCcEEECCCCc-ccccCh---hhccCCCCcCEEECCCCC-CCcCCHHH----hcCC----CCCCEEECCCCcc-CcC
Confidence 46788888887754 444443 467888999999999876 55554331 2223 8999999999874 456
Q ss_pred ccc-ccCCCCccEEEeccCCCcccCCCC--CCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC
Q 038031 374 PQS-SLSLCSLREIEIYNCSSLVSFPEV--ALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ 450 (729)
Q Consensus 374 ~~~-~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 450 (729)
|.. +..+++|++|++++ +.++.++.. ..+++|++|++++|. ++.++. ..+++|+.++++++ .+..+ .
T Consensus 133 ~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----~~l~~L~~L~l~~n-~l~~~---~ 202 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL----SLIPSLFHANVSYN-LLSTL---A 202 (390)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG----GGCTTCSEEECCSS-CCSEE---E
T ss_pred CHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCc-CCcccc----ccccccceeecccc-ccccc---C
Confidence 544 58899999999998 467777653 347899999999987 665543 56799999999885 44433 3
Q ss_pred CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccc
Q 038031 451 LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRL 530 (729)
Q Consensus 451 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l 530 (729)
.+.+|+.|+++++. ++.+ +.... + +|+.|+++++ .++.
T Consensus 203 ~~~~L~~L~l~~n~-l~~~--~~~~~-------~--~L~~L~l~~n-~l~~----------------------------- 240 (390)
T 3o6n_A 203 IPIAVEELDASHNS-INVV--RGPVN-------V--ELTILKLQHN-NLTD----------------------------- 240 (390)
T ss_dssp CCSSCSEEECCSSC-CCEE--ECCCC-------S--SCCEEECCSS-CCCC-----------------------------
T ss_pred CCCcceEEECCCCe-eeec--ccccc-------c--cccEEECCCC-CCcc-----------------------------
Confidence 45679999998864 5555 33322 3 7888888874 2221
Q ss_pred ccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccc
Q 038031 531 EALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMV 609 (729)
Q Consensus 531 ~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 609 (729)
+ ..+..+++|++|++++|.+..+. .....+++|++|++++|.+.... ..+..+++|++|++++|. +.
T Consensus 241 --~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~n~----l~ 308 (390)
T 3o6n_A 241 --T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNH----LL 308 (390)
T ss_dssp --C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECCSSC----CC
T ss_pred --c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECCCCc----ce
Confidence 1 23567789999999999888764 55666789999999999887642 245778999999999998 77
Q ss_pred cccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCC
Q 038031 610 SFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
.+|...+ .+++|+.|++++ +.++.++ +..+++|++|++++|+
T Consensus 309 ~~~~~~~-------~l~~L~~L~L~~-N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 309 HVERNQP-------QFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCGGGHH-------HHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred ecCcccc-------ccCcCCEEECCC-CccceeC--chhhccCCEEEcCCCC
Confidence 7776553 579999999999 5677775 7788999999999963
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.8e-20 Score=207.98 Aligned_cols=280 Identities=17% Similarity=0.140 Sum_probs=188.7
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+++|+.|++.++. +..++. ..+..+++|+.|+++++. +..+++.. +..+ ++|++|++++|.. +.+
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l-~~l 138 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEIDT---YAFAYAHTIQKLYMGFNA-IRYLPPHV----FQNV----PLLTVLVLERNDL-SSL 138 (597)
T ss_dssp HCCCCSEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC-CCCCCTTT----TTTC----TTCCEEECCSSCC-CCC
T ss_pred cCCCCcEEECCCCC-CCCCCh---HHhcCCCCCCEEECCCCc-CCCCCHHH----HcCC----CCCCEEEeeCCCC-CCC
Confidence 46788888887754 444443 467788899999998876 55554431 2223 8899999999874 455
Q ss_pred cc-cccCCCCccEEEeccCCCcccCCCC--CCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC
Q 038031 374 PQ-SSLSLCSLREIEIYNCSSLVSFPEV--ALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ 450 (729)
Q Consensus 374 ~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 450 (729)
|. .+..+++|++|++++| .++.+++. ..+++|++|++++|. +..++. ..+++|+.|+++++ .+..+ .
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----~~l~~L~~L~l~~n-~l~~l---~ 208 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDL----SLIPSLFHANVSYN-LLSTL---A 208 (597)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG----GGCTTCSEEECCSS-CCSEE---E
T ss_pred CHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcCh----hhhhhhhhhhcccC-ccccc---c
Confidence 54 4688999999999984 66766643 347899999999887 665543 56788999999884 44433 3
Q ss_pred CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccc
Q 038031 451 LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRL 530 (729)
Q Consensus 451 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l 530 (729)
.+.+|+.|+++++. +..+ +.... + +|+.|+++++ .++.
T Consensus 209 ~~~~L~~L~ls~n~-l~~~--~~~~~-------~--~L~~L~L~~n-~l~~----------------------------- 246 (597)
T 3oja_B 209 IPIAVEELDASHNS-INVV--RGPVN-------V--ELTILKLQHN-NLTD----------------------------- 246 (597)
T ss_dssp CCTTCSEEECCSSC-CCEE--ECSCC-------S--CCCEEECCSS-CCCC-----------------------------
T ss_pred CCchhheeeccCCc-cccc--ccccC-------C--CCCEEECCCC-CCCC-----------------------------
Confidence 45678999988864 5555 33222 2 7888888774 2221
Q ss_pred ccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccc
Q 038031 531 EALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMV 609 (729)
Q Consensus 531 ~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 609 (729)
+..+..+++|+.|++++|.+..+. ..++.+++|++|++++|.+.... ..+..+++|++|++++|. +.
T Consensus 247 ---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~N~----l~ 314 (597)
T 3oja_B 247 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNH----LL 314 (597)
T ss_dssp ---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCSSC----CC
T ss_pred ---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCCCC----CC
Confidence 123456677777777777776553 44555677777777777766532 244567777777777777 55
Q ss_pred cccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCC
Q 038031 610 SFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
.+|...+ .+++|+.|++++ +.+..++ +..+++|++|++++|+
T Consensus 315 ~i~~~~~-------~l~~L~~L~L~~-N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 315 HVERNQP-------QFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCGGGHH-------HHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred ccCcccc-------cCCCCCEEECCC-CCCCCcC--hhhcCCCCEEEeeCCC
Confidence 6665542 567777777777 4566554 5667777777777754
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2e-19 Score=187.50 Aligned_cols=287 Identities=13% Similarity=0.164 Sum_probs=179.6
Q ss_pred cccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCC--CCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 358 RLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEV--ALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 358 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
+++.++++++. ++.+|..+ .++++.|++++ +.++.++.. ..+++|++|++++|. +..+....+ ..+++|++|
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL--PPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF-APLVKLERL 105 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC--CTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEE
T ss_pred CCeEEEecCCC-ccccCccC--CCCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCEE
Confidence 44555554443 33344322 24556666665 345555432 225566666666555 333322222 556666666
Q ss_pred EeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccc
Q 038031 436 NIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESL 515 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 515 (729)
+++++ .++.++... +++|+.|+++++. ++.+ +...+. .++ +|+.|+++++. +..
T Consensus 106 ~Ls~n-~l~~l~~~~-~~~L~~L~l~~n~-l~~~--~~~~~~----~l~--~L~~L~l~~n~-l~~-------------- 159 (330)
T 1xku_A 106 YLSKN-QLKELPEKM-PKTLQELRVHENE-ITKV--RKSVFN----GLN--QMIVVELGTNP-LKS-------------- 159 (330)
T ss_dssp ECCSS-CCSBCCSSC-CTTCCEEECCSSC-CCBB--CHHHHT----TCT--TCCEEECCSSC-CCG--------------
T ss_pred ECCCC-cCCccChhh-cccccEEECCCCc-cccc--CHhHhc----CCc--cccEEECCCCc-CCc--------------
Confidence 66653 344443322 2456666666553 4443 333333 455 78888877642 111
Q ss_pred cccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcc
Q 038031 516 EVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLR 595 (729)
Q Consensus 516 ~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~ 595 (729)
....+..+..+++|++|++++|.+..++... +++|++|++++|.+....+ ..+..+++|+
T Consensus 160 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~ 219 (330)
T 1xku_A 160 --------------SGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDA----ASLKGLNNLA 219 (330)
T ss_dssp --------------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECT----GGGTTCTTCC
T ss_pred --------------cCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCH----HHhcCCCCCC
Confidence 0122345677899999999999888887433 3899999999998876543 3678899999
Q ss_pred eeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC----
Q 038031 596 HLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL---- 671 (729)
Q Consensus 596 ~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---- 671 (729)
+|++++|. +..++... +..+++|+.|++++ +.++.+|.++..+++|++|++++ +.++.++...+
T Consensus 220 ~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 220 KLGLSFNS----ISAVDNGS------LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPG 287 (330)
T ss_dssp EEECCSSC----CCEECTTT------GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSS
T ss_pred EEECCCCc----CceeChhh------ccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcc
Confidence 99999998 66655421 24679999999999 67889998899999999999999 57888876543
Q ss_pred ----CCccceeeccCCchhHHhhhccCCCCcccccccceEEeCC
Q 038031 672 ----PSSLLQLWISGCPLIEEKCRKDGGQYWDLLTHIPCVKIDW 711 (729)
Q Consensus 672 ----~~~L~~L~l~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (729)
..+|+.+++++||.....+.+ ..+....++..+++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQP---STFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCCCGGGEEC--
T ss_pred cccccccccceEeecCcccccccCc---cccccccceeEEEecc
Confidence 367899999999864332222 3445556666655543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=2.6e-19 Score=186.71 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=151.6
Q ss_pred cccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC--CCCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 358 RLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE--VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 358 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
+++.++++++. ++.+|..+ .++|+.|++++ +.++.++. ...+++|++|++++|. +..++...+ ..+++|++|
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF-SPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS-TTCTTCCEE
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh-hCcCCCCEE
Confidence 45555555544 34444433 24666666666 34555543 2225666666666665 444422222 566666666
Q ss_pred EeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccc
Q 038031 436 NIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESL 515 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 515 (729)
+++++ .+..++.... ++|+.|+++++. ++.+ +...+. .++ +|+.|+++++. ++.
T Consensus 108 ~L~~n-~l~~l~~~~~-~~L~~L~l~~n~-i~~~--~~~~~~----~l~--~L~~L~l~~n~-l~~-------------- 161 (332)
T 2ft3_A 108 YISKN-HLVEIPPNLP-SSLVELRIHDNR-IRKV--PKGVFS----GLR--NMNCIEMGGNP-LEN-------------- 161 (332)
T ss_dssp ECCSS-CCCSCCSSCC-TTCCEEECCSSC-CCCC--CSGGGS----SCS--SCCEEECCSCC-CBG--------------
T ss_pred ECCCC-cCCccCcccc-ccCCEEECCCCc-cCcc--CHhHhC----CCc--cCCEEECCCCc-ccc--------------
Confidence 66663 4444443322 457777666653 4444 444443 566 78888887742 211
Q ss_pred cccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcc
Q 038031 516 EVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLR 595 (729)
Q Consensus 516 ~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~ 595 (729)
....+..+..+ +|++|++++|++..++... +++|++|++++|.+....+ ..+..+++|+
T Consensus 162 --------------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~ 220 (332)
T 2ft3_A 162 --------------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIEL----EDLLRYSKLY 220 (332)
T ss_dssp --------------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCT----TSSTTCTTCS
T ss_pred --------------CCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCH----HHhcCCCCCC
Confidence 01112233444 6777777777666666322 2677777777776665432 2566777777
Q ss_pred eeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC----
Q 038031 596 HLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL---- 671 (729)
Q Consensus 596 ~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---- 671 (729)
+|++++|. +..++... +..+++|+.|++++ +.++.+|..+..+++|++|++++ +.++.++...+
T Consensus 221 ~L~L~~N~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 221 RLGLGHNQ----IRMIENGS------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVG 288 (332)
T ss_dssp CCBCCSSC----CCCCCTTG------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSS
T ss_pred EEECCCCc----CCcCChhH------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccc
Confidence 77777776 55554321 13567777777777 56667776677777777777777 45666655322
Q ss_pred ----CCccceeeccCCchh
Q 038031 672 ----PSSLLQLWISGCPLI 686 (729)
Q Consensus 672 ----~~~L~~L~l~~n~~l 686 (729)
..+|+.|++++||..
T Consensus 289 ~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSSCCBSEEECCSSSSC
T ss_pred cccccccccceEeecCccc
Confidence 245677777777753
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=2e-19 Score=186.64 Aligned_cols=236 Identities=22% Similarity=0.290 Sum_probs=161.3
Q ss_pred cCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC-CCCcCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 356 SCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE-VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 356 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
.+++++|++++|. ++.+|..+..+++|++|++++ +.++.+|. ...+++|++|++++|. +..+|..+ ..+++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCE
Confidence 3789999999987 457888888899999999998 46777775 3348899999999987 66777665 78888999
Q ss_pred EEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccc
Q 038031 435 LNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLES 514 (729)
Q Consensus 435 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 514 (729)
|++++|+.+..++. .+....+ +.. +. .++ +|+.|+++++
T Consensus 155 L~L~~n~~~~~~p~-----~~~~~~~-----------~~~-~~----~l~--~L~~L~L~~n------------------ 193 (328)
T 4fcg_A 155 LSIRACPELTELPE-----PLASTDA-----------SGE-HQ----GLV--NLQSLRLEWT------------------ 193 (328)
T ss_dssp EEEEEETTCCCCCS-----CSEEEC------------CCC-EE----EST--TCCEEEEEEE------------------
T ss_pred EECCCCCCccccCh-----hHhhccc-----------hhh-hc----cCC--CCCEEECcCC------------------
Confidence 99988766554432 1221111 000 11 344 6666666652
Q ss_pred ccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCc
Q 038031 515 LEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSL 594 (729)
Q Consensus 515 L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L 594 (729)
++..+|..+..+++|++|++++|.+..+++..+.+++|++|++++|++.+..+. .+..+++|
T Consensus 194 --------------~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L 255 (328)
T 4fcg_A 194 --------------GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPL 255 (328)
T ss_dssp --------------CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCC
T ss_pred --------------CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH----HhcCCCCC
Confidence 223455566777888888888887777775566667777777777777665542 56677777
Q ss_pred ceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCC
Q 038031 595 RHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYF 666 (729)
Q Consensus 595 ~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 666 (729)
++|++++|.. .+.+|... ..+++|+.|++++|+.++.+|..+..+++|+.+++.. +.+..+
T Consensus 256 ~~L~L~~n~~---~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~-~~~~~l 316 (328)
T 4fcg_A 256 KRLILKDCSN---LLTLPLDI-------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP-HLQAQL 316 (328)
T ss_dssp CEEECTTCTT---CCBCCTTG-------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG-GGSCC-
T ss_pred CEEECCCCCc---hhhcchhh-------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH-HHHHHH
Confidence 7777777664 55566544 3567777777777777777777777777777777765 344443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=4.4e-19 Score=184.94 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCc
Q 038031 324 CSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALP 403 (729)
Q Consensus 324 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 403 (729)
++++.|+++++. ++.+.+. .+..+ ++|++|++++|......|..+..+++|++|++++ +.++.+|...+
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~- 122 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKD----DFKGL----QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP- 122 (332)
T ss_dssp TTCCEEECCSSC-CCEECTT----TTTTC----TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC-
T ss_pred CCCeEEECCCCc-CCccCHh----HhhCC----CCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc-
Confidence 466666666554 4443322 12222 5666666666654444455666666666666666 35555554333
Q ss_pred CCcceEEEecCCCCCccccccccCCCCCccEEEeecC
Q 038031 404 SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYC 440 (729)
Q Consensus 404 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 440 (729)
++|++|++++|. +..++...+ ..+++|++|+++++
T Consensus 123 ~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 123 SSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGN 157 (332)
T ss_dssp TTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSC
T ss_pred ccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCC
Confidence 566666666665 445554433 55666666666653
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.6e-21 Score=220.83 Aligned_cols=61 Identities=20% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCccceEEEccCCCCCC--CCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 540 LSCLQELTIIGGALPSL--EEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
+++|++|++++|+++.. +.....+++|++|++++|.+..... ...+..+++|++|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI---AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH---HHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH---HHHHHhcCccCeeECcCCc
Confidence 45566666666644321 1222334556666666655433221 1122345555666666555
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.9e-18 Score=179.97 Aligned_cols=262 Identities=16% Similarity=0.183 Sum_probs=126.5
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCC--CCCcCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPE--VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
+++++|++++|...+..+..+..+++|++|++++| .++.+.+ ...+++|++|++++|. ++.+|... .++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh----cccccE
Confidence 45555555555432222234555555555555552 3444422 1224555555555554 44444432 145555
Q ss_pred EEeecCCCccccccc--CCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccc
Q 038031 435 LNIQYCCSLRYIVEV--QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATL 512 (729)
Q Consensus 435 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 512 (729)
|+++++ .+..++.. .-.++|+.|+++++. ++...+....+. .++ +|+.|+++++ .++.
T Consensus 126 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~l~--~L~~L~l~~n-~l~~----------- 185 (330)
T 1xku_A 126 LRVHEN-EITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQ----GMK--KLSYIRIADT-NITT----------- 185 (330)
T ss_dssp EECCSS-CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGG----GCT--TCCEEECCSS-CCCS-----------
T ss_pred EECCCC-cccccCHhHhcCCccccEEECCCCc-CCccCcChhhcc----CCC--CcCEEECCCC-cccc-----------
Confidence 555553 23333221 112345555555543 221111222222 455 7777777663 2222
Q ss_pred ccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCC
Q 038031 513 ESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRF 591 (729)
Q Consensus 513 ~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 591 (729)
+|..+ .++|++|++++|.+..+. .....+++|++|++++|.+....+ ..+..+
T Consensus 186 --------------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l 239 (330)
T 1xku_A 186 --------------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLANT 239 (330)
T ss_dssp --------------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGGGS
T ss_pred --------------------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhccCC
Confidence 22222 145666666666555543 334444666666666665554322 245556
Q ss_pred CCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCC------CCCCccEEeecCCCCCC
Q 038031 592 SSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIV------DLQNLTELHLWDCPKLK 664 (729)
Q Consensus 592 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~------~l~~L~~L~l~~c~~l~ 664 (729)
++|++|++++|. +..+|... ..+++|++|++++ +.++.++ ..+. ..++|+.+++++|+ +.
T Consensus 240 ~~L~~L~L~~N~----l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~ 306 (330)
T 1xku_A 240 PHLRELHLNNNK----LVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ 306 (330)
T ss_dssp TTCCEEECCSSC----CSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred CCCCEEECCCCc----CccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-cc
Confidence 666666666666 55555543 2556666666666 4565555 2222 23566677777654 32
Q ss_pred C--CCCCCC--CCccceeeccCC
Q 038031 665 Y--FPEKGL--PSSLLQLWISGC 683 (729)
Q Consensus 665 ~--l~~~~~--~~~L~~L~l~~n 683 (729)
. ++...+ +.+++.+++++|
T Consensus 307 ~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccCccccccccceeEEEeccc
Confidence 2 222222 456666666665
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=6.7e-18 Score=188.69 Aligned_cols=256 Identities=28% Similarity=0.342 Sum_probs=156.6
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
.++++|+++++. ++.+|..+. ++|++|++++ +.++.+|. .+++|++|++++|. ++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~-N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECS-CCCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecC-CCCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 356666666655 345554443 5666666666 35666654 45666666666665 555553 346666666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
+++| .+..++. .+++|+.|++.++. ++.+ +.. ++ +|+.|++++| .++. ++. .+++|+.|
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~l--p~~--------l~--~L~~L~Ls~N-~l~~-l~~--~~~~L~~L- 166 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSL--PVL--------PP--GLQELSVSDN-QLAS-LPA--LPSELCKL- 166 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSSC-CSCC--CCC--------CT--TCCEEECCSS-CCSC-CCC--CCTTCCEE-
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCCC-CCcC--CCC--------CC--CCCEEECcCC-cCCC-cCC--ccCCCCEE-
Confidence 6663 4444443 34556666666553 4444 321 23 6677777664 3443 332 33556666
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcce
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRH 596 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~ 596 (729)
.+.+ +.+..+| ..+++|+.|++++|.+..++. .+++|+.|++++|.+.... ..+++|++
T Consensus 167 ------~L~~-N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--------~~~~~L~~ 225 (622)
T 3g06_A 167 ------WAYN-NQLTSLP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLP--------ALPSGLKE 225 (622)
T ss_dssp ------ECCS-SCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCC--------CCCTTCCE
T ss_pred ------ECCC-CCCCCCc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccccC--------CCCCCCCE
Confidence 4444 3455555 345778888888887776663 2467888888877665421 22467888
Q ss_pred eeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCcc
Q 038031 597 LTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSL 675 (729)
Q Consensus 597 L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 675 (729)
|++++|. +..+|. .+++|+.|++++ +.++.+|. .+++|++|++++| .++.+|.. ..+++|
T Consensus 226 L~Ls~N~----L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 226 LIVSGNR----LTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp EECCSSC----CSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred EEccCCc----cCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 8888877 666662 357788888887 56777765 5677888888774 66677653 236778
Q ss_pred ceeeccCCch
Q 038031 676 LQLWISGCPL 685 (729)
Q Consensus 676 ~~L~l~~n~~ 685 (729)
+.|++++|+.
T Consensus 287 ~~L~L~~N~l 296 (622)
T 3g06_A 287 TTVNLEGNPL 296 (622)
T ss_dssp CEEECCSCCC
T ss_pred CEEEecCCCC
Confidence 8888888864
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=4.2e-19 Score=183.15 Aligned_cols=251 Identities=18% Similarity=0.135 Sum_probs=179.7
Q ss_pred CcccEEEeeecCCcc--cccccccCCCCccEEEeccCCCcc-cCCC-CCCcCCcceEEEecCCCCCccccccccCCCCCc
Q 038031 357 CRLEYLGLLYCEGLV--KLPQSSLSLCSLREIEIYNCSSLV-SFPE-VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSL 432 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 432 (729)
.++++|+++++...+ .+|..+..+++|++|++++++.+. .+|. ...+++|++|++++|.....+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 578889999888666 788888999999999998634555 4553 3337889999999888444666654 778888
Q ss_pred cEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccc
Q 038031 433 EILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATL 512 (729)
Q Consensus 433 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 512 (729)
++|++++|. +.. .+ +..+. .++ +|+.|+++++ .++.
T Consensus 128 ~~L~Ls~N~-l~~----------------------~~--p~~~~-----~l~--~L~~L~L~~N-~l~~----------- 163 (313)
T 1ogq_A 128 VTLDFSYNA-LSG----------------------TL--PPSIS-----SLP--NLVGITFDGN-RISG----------- 163 (313)
T ss_dssp CEEECCSSE-EES----------------------CC--CGGGG-----GCT--TCCEEECCSS-CCEE-----------
T ss_pred CEEeCCCCc-cCC----------------------cC--ChHHh-----cCC--CCCeEECcCC-cccC-----------
Confidence 888888752 211 00 11111 344 7777777763 1211
Q ss_pred ccccccccccccccCcccccccCcCCCCC-ccceEEEccCCCC-CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCC
Q 038031 513 ESLEVGNLPPSLKSLSRLEALPKGLHNLS-CLQELTIIGGALP-SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHR 590 (729)
Q Consensus 513 ~~L~~~~~~~~l~~~~~l~~l~~~~~~l~-~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 590 (729)
.+|..+..++ +|++|++++|++. .++.....++ |++|++++|.+....+ ..+..
T Consensus 164 -------------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~----~~~~~ 219 (313)
T 1ogq_A 164 -------------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS----VLFGS 219 (313)
T ss_dssp -------------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG----GGCCT
T ss_pred -------------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC----HHHhc
Confidence 2344556666 8889999988776 4444444444 9999999998876554 36788
Q ss_pred CCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCC
Q 038031 591 FSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKG 670 (729)
Q Consensus 591 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 670 (729)
+++|++|++++|. +...+... ..+++|++|++++|.....+|..+..+++|++|++++|+.-+.+|..+
T Consensus 220 l~~L~~L~L~~N~----l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 220 DKNTQKIHLAKNS----LAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp TSCCSEEECCSSE----ECCBGGGC-------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred CCCCCEEECCCCc----eeeecCcc-------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 9999999999988 44333323 367999999999954444788889999999999999976555888876
Q ss_pred CCCccceeeccCCchhHH
Q 038031 671 LPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 671 ~~~~L~~L~l~~n~~l~~ 688 (729)
.+++|+.+++++|+.+..
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 688999999999997654
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=6.9e-20 Score=207.31 Aligned_cols=113 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCccceEEEc----cCCCCCCC------CCCCCCCCcceEEecCch--hhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 540 LSCLQELTII----GGALPSLE------EEDGLPTNLQSLDIRGNM--EICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 540 l~~L~~L~l~----~~~i~~l~------~~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+++|++|+++ .+.++..+ .....+++|++|++++|. +....+ ......+++|++|++++|...
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~---~~~~~~~~~L~~L~L~~n~l~-- 476 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL---SYIGQYSPNVRWMLLGYVGES-- 476 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH---HHHHHSCTTCCEEEECSCCSS--
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH---HHHHHhCccceEeeccCCCCC--
Confidence 6777788876 33344321 112335778888886544 333322 112234677888888877632
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCccc--ccccCCCCCCccEEeecCCCCCCCC
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLER--LSSSIVDLQNLTELHLWDCPKLKYF 666 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l 666 (729)
-..++... ..+++|++|++++|+ ++. ++.....+++|++|++++|+ ++..
T Consensus 477 ~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 477 DEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 12233322 245778888888866 443 23344567788888888865 5444
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=3.2e-18 Score=177.57 Aligned_cols=231 Identities=25% Similarity=0.328 Sum_probs=173.4
Q ss_pred CCCCccEEEeccCCCcccCCCCCC-cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCe
Q 038031 379 SLCSLREIEIYNCSSLVSFPEVAL-PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQ 457 (729)
Q Consensus 379 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 457 (729)
..++++.|++++ +.++.+|.... +++|++|++++|. +..+|..+ ..+++|++|++++| .+..++.
T Consensus 79 ~~~~l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~--~~l~~L~~L~Ls~n-~l~~lp~--------- 144 (328)
T 4fcg_A 79 TQPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM--QQFAGLETLTLARN-PLRALPA--------- 144 (328)
T ss_dssp TSTTCCEEEEES-SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG--GGGTTCSEEEEESC-CCCCCCG---------
T ss_pred cccceeEEEccC-CCchhcChhhhhCCCCCEEECCCCC-ccchhHHH--hccCCCCEEECCCC-ccccCcH---------
Confidence 357899999998 57788876433 8899999999988 55777655 77888888888885 3333321
Q ss_pred EEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcC
Q 038031 458 LTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGL 537 (729)
Q Consensus 458 L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~ 537 (729)
.+. .++ +|+.|++++|..+.. +|. .+.. ..++..+
T Consensus 145 ----------------~l~-----~l~--~L~~L~L~~n~~~~~-~p~-----------------~~~~----~~~~~~~ 179 (328)
T 4fcg_A 145 ----------------SIA-----SLN--RLRELSIRACPELTE-LPE-----------------PLAS----TDASGEH 179 (328)
T ss_dssp ----------------GGG-----GCT--TCCEEEEEEETTCCC-CCS-----------------CSEE----EC-CCCE
T ss_pred ----------------HHh-----cCc--CCCEEECCCCCCccc-cCh-----------------hHhh----ccchhhh
Confidence 111 233 566666665543333 211 1111 0112235
Q ss_pred CCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccc
Q 038031 538 HNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKR 617 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 617 (729)
..+++|++|++++|++..++...+.+++|++|++++|.+.... ..+..+++|++|++++|.. .+.+|...
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-----~~l~~l~~L~~L~Ls~n~~---~~~~p~~~-- 249 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-----PAIHHLPKLEELDLRGCTA---LRNYPPIF-- 249 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-----GGGGGCTTCCEEECTTCTT---CCBCCCCT--
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-----hhhccCCCCCEEECcCCcc---hhhhHHHh--
Confidence 6789999999999999988877777899999999999988642 2578899999999999886 56666655
Q ss_pred cCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCC
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGC 683 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n 683 (729)
..+++|+.|++++|+.++.+|..+..+++|++|++++|+.++.+|.. +.+++|+.+++..+
T Consensus 250 -----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 250 -----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 47899999999999999999988999999999999999999999985 34788888888754
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.8e-21 Score=218.87 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=49.3
Q ss_pred CCCCccceEEEccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 538 HNLSCLQELTIIGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
..+++|++|++++ .+.... .....+++|++|++++|.+...... .....+++|++|++++|... -..+....
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~L~~L~L~~n~~~--~~~~~~~~ 502 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH---HVLSGCDSLRKLEIRDCPFG--DKALLANA 502 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH---HHHHHCTTCCEEEEESCSCC--HHHHHHTG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH---HHHhcCCCcCEEECcCCCCc--HHHHHHHH
Confidence 3455666666654 222111 1111245666666666665443321 11244666666666666521 11111111
Q ss_pred cccCCccCCCCCcceEEcccCCCcccccccC-CCCCCccEEeecC
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLSSSI-VDLQNLTELHLWD 659 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~ 659 (729)
..+++|+.|++++|+....-...+ ..+|+|+...+..
T Consensus 503 -------~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 503 -------SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp -------GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred -------HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 134666666666654422111222 3455555555544
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=4e-17 Score=182.40 Aligned_cols=256 Identities=30% Similarity=0.372 Sum_probs=170.7
Q ss_pred CccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcC
Q 038031 325 SLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPS 404 (729)
Q Consensus 325 ~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 404 (729)
.++.|+++++. ++.++.. .+++|++|++++|. ++.+|. .+++|++|++++ +.++.+|. .++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~-----------l~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~-N~l~~lp~--~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDC-----------LPAHITTLVIPDNN-LTSLPA---LPPELRTLEVSG-NQLTSLPV--LPP 101 (622)
T ss_dssp CCCEEECCSSC-CSCCCSC-----------CCTTCSEEEECSCC-CSCCCC---CCTTCCEEEECS-CCCSCCCC--CCT
T ss_pred CCcEEEecCCC-cCccChh-----------hCCCCcEEEecCCC-CCCCCC---cCCCCCEEEcCC-CcCCcCCC--CCC
Confidence 46666666544 4444432 12567777777665 345554 456777777776 35666664 456
Q ss_pred CcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCcccccccccc
Q 038031 405 KLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYT 484 (729)
Q Consensus 405 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~ 484 (729)
+|++|++++|. +..++. .+++|+.|++++| .++.++.. +++|+.|+++++. ++.+ +. .++
T Consensus 102 ~L~~L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N~-l~~l--~~--------~~~ 161 (622)
T 3g06_A 102 GLLELSIFSNP-LTHLPA-----LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQ-LASL--PA--------LPS 161 (622)
T ss_dssp TCCEEEECSCC-CCCCCC-----CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCC--CC--------CCT
T ss_pred CCCEEECcCCc-CCCCCC-----CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCCc-CCCc--CC--------ccC
Confidence 77777777665 555543 3466777777663 44444432 2557777776653 4444 32 122
Q ss_pred ccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCC
Q 038031 485 SSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPT 564 (729)
Q Consensus 485 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~ 564 (729)
+|+.|++++ +.++. ++ ..+++|+.| ++.+ +.+..+|. .+++|+.|++++|.+..++. .++
T Consensus 162 --~L~~L~L~~-N~l~~-l~--~~~~~L~~L-------~Ls~-N~l~~l~~---~~~~L~~L~L~~N~l~~l~~---~~~ 221 (622)
T 3g06_A 162 --ELCKLWAYN-NQLTS-LP--MLPSGLQEL-------SVSD-NQLASLPT---LPSELYKLWAYNNRLTSLPA---LPS 221 (622)
T ss_dssp --TCCEEECCS-SCCSC-CC--CCCTTCCEE-------ECCS-SCCSCCCC---CCTTCCEEECCSSCCSSCCC---CCT
T ss_pred --CCCEEECCC-CCCCC-Cc--ccCCCCcEE-------ECCC-CCCCCCCC---ccchhhEEECcCCcccccCC---CCC
Confidence 677777766 34444 44 334667777 5555 34555654 34789999999998888774 348
Q ss_pred CcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc
Q 038031 565 NLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS 644 (729)
Q Consensus 565 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 644 (729)
+|++|++++|.+... + ..+++|++|++++|. +..+|. .+++|+.|++++ +.++.+|.
T Consensus 222 ~L~~L~Ls~N~L~~l-p-------~~l~~L~~L~Ls~N~----L~~lp~----------~~~~L~~L~Ls~-N~L~~lp~ 278 (622)
T 3g06_A 222 GLKELIVSGNRLTSL-P-------VLPSELKELMVSGNR----LTSLPM----------LPSGLLSLSVYR-NQLTRLPE 278 (622)
T ss_dssp TCCEEECCSSCCSCC-C-------CCCTTCCEEECCSSC----CSCCCC----------CCTTCCEEECCS-SCCCSCCG
T ss_pred CCCEEEccCCccCcC-C-------CCCCcCcEEECCCCC----CCcCCc----------ccccCcEEeCCC-CCCCcCCH
Confidence 999999999987652 1 456899999999998 777876 358999999999 67889998
Q ss_pred cCCCCCCccEEeecCCCC
Q 038031 645 SIVDLQNLTELHLWDCPK 662 (729)
Q Consensus 645 ~~~~l~~L~~L~l~~c~~ 662 (729)
.+..+++|+.|++++|+.
T Consensus 279 ~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGGSCTTCEEECCSCCC
T ss_pred HHhhccccCEEEecCCCC
Confidence 899999999999999753
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.1e-17 Score=178.65 Aligned_cols=223 Identities=21% Similarity=0.212 Sum_probs=126.9
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
+++++|++++|......+..+..+++|++|++++ +.++.++...+ +++|++|++++|. +..++...+ ..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCCE
Confidence 6777777777765555556677778888888877 45666654333 6777788877776 666665544 66777777
Q ss_pred EEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccc
Q 038031 435 LNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLES 514 (729)
Q Consensus 435 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 514 (729)
|+++++ .+..++. ..+. .++ +|+.|++++|+.+..
T Consensus 152 L~L~~N-~l~~~~~-------------------------~~~~----~l~--~L~~L~l~~~~~l~~------------- 186 (452)
T 3zyi_A 152 LWLRNN-PIESIPS-------------------------YAFN----RVP--SLMRLDLGELKKLEY------------- 186 (452)
T ss_dssp EECCSC-CCCEECT-------------------------TTTT----TCT--TCCEEECCCCTTCCE-------------
T ss_pred EECCCC-CcceeCH-------------------------hHHh----cCC--cccEEeCCCCCCccc-------------
Confidence 777764 3333322 1111 233 555555554433322
Q ss_pred ccccccccccccCcccccccC-cCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC
Q 038031 515 LEVGNLPPSLKSLSRLEALPK-GLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS 593 (729)
Q Consensus 515 L~~~~~~~~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 593 (729)
++. .+..+++|++|++++|.+..++. ...+++|++|++++|.+....+ ..+..+++
T Consensus 187 ------------------i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~ 243 (452)
T 3zyi_A 187 ------------------ISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRP----GSFHGLSS 243 (452)
T ss_dssp ------------------ECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECG----GGGTTCTT
T ss_pred ------------------cChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCc----ccccCccC
Confidence 111 23455566666666665555542 3334566666666666554433 24556666
Q ss_pred cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 594 LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 594 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
|++|++++|. +..++.. ++..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 244 L~~L~L~~n~----l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQ----VSLIERN------AFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSC----CCEECTT------TTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCc----CceECHH------HhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 6666666665 4443321 123456666666666 4555555 345556666666666643
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1.4e-20 Score=213.18 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCCccceEEEccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCC
Q 038031 539 NLSCLQELTIIGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDD 604 (729)
Q Consensus 539 ~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~ 604 (729)
.+++|++|++++|.+.... .....+++|++|++++|.+..... ...+..+++|++|++++|..
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL---LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH---HHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH---HHHHHhCCCCCEEeeeCCCC
Confidence 3678999999998654322 222346889999999998854433 23446688999999999873
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=6.1e-17 Score=175.65 Aligned_cols=223 Identities=18% Similarity=0.187 Sum_probs=114.8
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCC--CcCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVA--LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
++++.|++++|......+..+..+++|++|++++ +.++.++... .+++|++|++++|. ++.++...+ ..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF-VYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS-CSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCc-CCeeCHhHh-hccccCce
Confidence 5666666666654333344556666666666665 3455544322 25566666666654 555544333 55566666
Q ss_pred EEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccc
Q 038031 435 LNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLES 514 (729)
Q Consensus 435 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 514 (729)
|+++++ .+..++ ...+. .++ +|+.|+++++..+..
T Consensus 141 L~L~~N-~i~~~~-------------------------~~~~~----~l~--~L~~L~l~~~~~l~~------------- 175 (440)
T 3zyj_A 141 LWLRNN-PIESIP-------------------------SYAFN----RIP--SLRRLDLGELKRLSY------------- 175 (440)
T ss_dssp EECCSC-CCCEEC-------------------------TTTTT----TCT--TCCEEECCCCTTCCE-------------
T ss_pred eeCCCC-cccccC-------------------------HHHhh----hCc--ccCEeCCCCCCCcce-------------
Confidence 666553 232222 22222 233 455555544333322
Q ss_pred ccccccccccccCcccccccC-cCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC
Q 038031 515 LEVGNLPPSLKSLSRLEALPK-GLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS 593 (729)
Q Consensus 515 L~~~~~~~~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 593 (729)
++. .+..+++|++|++++|.+..++. ...+++|++|++++|.+....+ ..+..+++
T Consensus 176 ------------------i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~ 232 (440)
T 3zyj_A 176 ------------------ISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRP----GSFQGLMH 232 (440)
T ss_dssp ------------------ECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECT----TTTTTCTT
T ss_pred ------------------eCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccCh----hhhccCcc
Confidence 221 23455566666666665555543 3334566666666665554332 24556666
Q ss_pred cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 594 LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 594 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
|++|++++|. +..++.. ++..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 233 L~~L~L~~n~----l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQ----IQVIERN------AFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCC----CCEECTT------SSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCc----eeEEChh------hhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 6666666665 4444331 123456666666666 4555555 344556666666666643
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=175.23 Aligned_cols=253 Identities=19% Similarity=0.196 Sum_probs=128.5
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCC--CCcCCcceEEEecCCCCCccccccccCCCCCccE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEV--ALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEI 434 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 434 (729)
++|++|++++|......+..+..+++|++|++++| .++.++.. ..+++|++|++++|. ++.++...+ ..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCE
Confidence 57777777777643333336777888888888774 56666442 336778888888776 666665533 67777888
Q ss_pred EEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccc
Q 038031 435 LNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLES 514 (729)
Q Consensus 435 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 514 (729)
|+++++ .+..++.. ..+. .++ +|+.|+++++..+.. ++
T Consensus 129 L~L~~n-~l~~l~~~------------------------~~~~----~l~--~L~~L~l~~n~~~~~-~~---------- 166 (353)
T 2z80_A 129 LNLLGN-PYKTLGET------------------------SLFS----HLT--KLQILRVGNMDTFTK-IQ---------- 166 (353)
T ss_dssp EECTTC-CCSSSCSS------------------------CSCT----TCT--TCCEEEEEESSSCCE-EC----------
T ss_pred EECCCC-CCcccCch------------------------hhhc----cCC--CCcEEECCCCccccc-cC----------
Confidence 888774 33333320 1111 223 444444444322221 00
Q ss_pred ccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC
Q 038031 515 LEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS 593 (729)
Q Consensus 515 L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 593 (729)
+..+..+++|++|++++|.+..+. .....+++|++|++++|.+..... ..+..+++
T Consensus 167 -------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~ 223 (353)
T 2z80_A 167 -------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSS 223 (353)
T ss_dssp -------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTT
T ss_pred -------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhccc
Confidence 112334455555555555444432 333344555555555554432221 12233555
Q ss_pred cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCC----CcccccccCCCCCCccEEeecCCCCCCCCCCC
Q 038031 594 LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFP----NLERLSSSIVDLQNLTELHLWDCPKLKYFPEK 669 (729)
Q Consensus 594 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 669 (729)
|++|++++|. +..++.... ......+.++.++++++. .+..+|..+..+++|++|++++ +.++.+|..
T Consensus 224 L~~L~L~~n~----l~~~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~ 295 (353)
T 2z80_A 224 VECLELRDTD----LDTFHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDG 295 (353)
T ss_dssp EEEEEEESCB----CTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTT
T ss_pred ccEEECCCCc----ccccccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHH
Confidence 5555555555 333321110 000123444555554421 1223455556666666666666 355666654
Q ss_pred C--CCCccceeeccCCch
Q 038031 670 G--LPSSLLQLWISGCPL 685 (729)
Q Consensus 670 ~--~~~~L~~L~l~~n~~ 685 (729)
. .+++|++|++++|+.
T Consensus 296 ~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HHhcCCCCCEEEeeCCCc
Confidence 2 256666666666653
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-18 Score=180.14 Aligned_cols=241 Identities=13% Similarity=0.061 Sum_probs=117.8
Q ss_pred cCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEE
Q 038031 356 SCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEIL 435 (729)
Q Consensus 356 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 435 (729)
+++|++|++++|......+..+..+++|++|++++| .++.++....+++|++|++++|. +..++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccC------CCCcCEE
Confidence 356777777776644444456667777777777763 45444434446666666666665 443332 2556666
Q ss_pred EeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccc
Q 038031 436 NIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESL 515 (729)
Q Consensus 436 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 515 (729)
++++| .+..++... ++ +|+.|+++++ .++. +
T Consensus 105 ~l~~n-~l~~~~~~~--------------------------------~~--~L~~L~l~~N-~l~~-~------------ 135 (317)
T 3o53_A 105 HAANN-NISRVSCSR--------------------------------GQ--GKKNIYLANN-KITM-L------------ 135 (317)
T ss_dssp ECCSS-CCSEEEECC--------------------------------CS--SCEEEECCSS-CCCS-G------------
T ss_pred ECCCC-ccCCcCccc--------------------------------cC--CCCEEECCCC-CCCC-c------------
Confidence 66553 232222211 11 4444444432 1111 0
Q ss_pred cccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCC
Q 038031 516 EVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSS 593 (729)
Q Consensus 516 ~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 593 (729)
.+..+..+++|++|++++|.+..+. .....+++|++|++++|.+.... ....+++
T Consensus 136 -----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~ 192 (317)
T 3o53_A 136 -----------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAK 192 (317)
T ss_dssp -----------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTT
T ss_pred -----------------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc------ccccccc
Confidence 0112334455555555555444433 11123355555555555544331 1123555
Q ss_pred cceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCC-CCCCCC-CC
Q 038031 594 LRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKL-KYFPEK-GL 671 (729)
Q Consensus 594 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~-~~ 671 (729)
|++|++++|. +..+|... ..+++|+.|++++ +.++.+|..+..+++|++|++++|+.. ..++.. +.
T Consensus 193 L~~L~Ls~N~----l~~l~~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 193 LKTLDLSSNK----LAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp CCEEECCSSC----CCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred CCEEECCCCc----CCcchhhh-------cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 6666666655 44444433 2455666666666 455556655566666666666664322 122211 11
Q ss_pred CCccceeeccCCchhHH
Q 038031 672 PSSLLQLWISGCPLIEE 688 (729)
Q Consensus 672 ~~~L~~L~l~~n~~l~~ 688 (729)
++.|+.+++++|+.++.
T Consensus 261 ~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cccceEEECCCchhccC
Confidence 44556666655555443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=6.7e-17 Score=175.31 Aligned_cols=222 Identities=22% Similarity=0.277 Sum_probs=136.9
Q ss_pred CCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCC-
Q 038031 323 ICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVA- 401 (729)
Q Consensus 323 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~- 401 (729)
.++++.|+++++. ++.+.... +..+ ++|++|++++|......+..+..+++|++|++++ +.++.++...
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~~~----~~~l----~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKVNS----FKHL----RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAF 132 (440)
T ss_dssp CTTCSEEECCSCC-CCEECTTT----TSSC----SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTS
T ss_pred CCCCcEEEccCCc-CCeeCHHH----hhCC----CCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHh
Confidence 3689999999876 66655432 3333 8999999999986555557889999999999999 5788887643
Q ss_pred -CcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC--CCCCCeEEEecCCCCcccccccCcccc
Q 038031 402 -LPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL--PPSLKQLTIWRCDNIRTLTVEEGIQSS 478 (729)
Q Consensus 402 -~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~ 478 (729)
.+++|++|++++|. +..++...+ ..+++|++|++++|+.+..++...+ .++|+.|+++++. ++.+ +. +.
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~--~~--~~- 204 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREI--PN--LT- 204 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSC--CC--CT-
T ss_pred hccccCceeeCCCCc-ccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccc--cc--cC-
Confidence 48999999999998 777776555 7889999999998776665554322 1334444444432 3322 21 00
Q ss_pred ccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccc-cCcCCCCCccceEEEccCCCCCCC
Q 038031 479 SSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEAL-PKGLHNLSCLQELTIIGGALPSLE 557 (729)
Q Consensus 479 ~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~l~ 557 (729)
.++ +|+.|+++++ .+..+ |..+..+++|++|++++|++..+.
T Consensus 205 ---~l~--~L~~L~Ls~N--------------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 205 ---PLI--KLDELDLSGN--------------------------------HLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp ---TCS--SCCEEECTTS--------------------------------CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ---CCc--ccCEEECCCC--------------------------------ccCccChhhhccCccCCEEECCCCceeEEC
Confidence 222 3444444332 11111 233455555666666666555444
Q ss_pred -CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 558 -EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 558 -~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
..+..+++|++|+|++|.+..... ..+..+++|+.|++++|.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSC
T ss_pred hhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCC
Confidence 333444555555555555543322 234555555555555554
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.4e-20 Score=200.78 Aligned_cols=337 Identities=17% Similarity=0.143 Sum_probs=206.7
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcc--
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLV-- 371 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-- 371 (729)
.+++|+.|++.+|.--..........+..+++|+.|+++++. +........ ...+....++|++|++++|....
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHH---HHHHhhCCCceeEEEccCCCCCHHH
Confidence 578899999998763222112223457778999999999875 443222111 11121111279999999998542
Q ss_pred --cccccccCCCCccEEEeccCCCcccCCC-------CCCcCCcceEEEecCCCCCcc-----ccccccCCCCCccEEEe
Q 038031 372 --KLPQSSLSLCSLREIEIYNCSSLVSFPE-------VALPSKLKKIQIRHCDALKSL-----PEAWMCDTNSSLEILNI 437 (729)
Q Consensus 372 --~~~~~~~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L~~L~l 437 (729)
.++..+..+++|++|++++| .++.... ....++|++|++++|. ++.. +..+ ..+++|++|++
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~L 177 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDFKELTV 177 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTCCEEEC
T ss_pred HHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCCCEEEC
Confidence 45777889999999999985 4553211 1114579999999997 5442 2222 56789999999
Q ss_pred ecCCCcccccccC-------CCCCCCeEEEecCCCCcccc---cccCccccccccccccccceEEecCCCCcccc----c
Q 038031 438 QYCCSLRYIVEVQ-------LPPSLKQLTIWRCDNIRTLT---VEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCI----F 503 (729)
Q Consensus 438 ~~c~~l~~~~~~~-------~~~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~----~ 503 (729)
++|. +.+..... ..++|+.|++++|. ++... ++.. + ..++ +|+.|+++++ .+... +
T Consensus 178 ~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l----~~~~--~L~~L~Ls~n-~l~~~~~~~l 247 (461)
T 1z7x_W 178 SNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGI-V----ASKA--SLRELALGSN-KLGDVGMAEL 247 (461)
T ss_dssp CSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHH-H----HHCT--TCCEEECCSS-BCHHHHHHHH
T ss_pred cCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHH-H----HhCC--CccEEeccCC-cCChHHHHHH
Confidence 9864 44322111 13469999998884 44320 0111 1 1345 8999999986 33331 0
Q ss_pred cCC--CCccccccccccccccccccCccccc-----ccCcCCCCCccceEEEccCCCCCCC------CCCCCCCCcceEE
Q 038031 504 SKN--ELPATLESLEVGNLPPSLKSLSRLEA-----LPKGLHNLSCLQELTIIGGALPSLE------EEDGLPTNLQSLD 570 (729)
Q Consensus 504 ~~~--~~~~~L~~L~~~~~~~~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~~~i~~l~------~~~~~~~~L~~L~ 570 (729)
... .-.++|++| ++++| .+.. ++..+..+++|++|++++|.+.... ......++|++|+
T Consensus 248 ~~~~~~~~~~L~~L-------~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 248 CPGLLHPSSRLRTL-------WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHTSTTCCCCEE-------ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHhcCCCCceEE-------ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 010 113568888 66665 4443 5666677888999999988665322 1122336889999
Q ss_pred ecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccc-ccccccCCcc-CCCCCcceEEcccCCCcc-----ccc
Q 038031 571 IRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFP-LEDKRLGTAL-PLPASLTSLSISRFPNLE-----RLS 643 (729)
Q Consensus 571 L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~-~~~~~~~~~~-~~l~~L~~L~l~~~~~l~-----~l~ 643 (729)
+++|.+...........+..+++|++|++++|. +.... .... ..+ ...++|++|++++| .++ .++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~----i~~~~~~~l~---~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNR----LEDAGVRELC---QGLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB----CHHHHHHHHH---HHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCc----cccccHHHHH---HHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 998887654321112345667889999999887 33321 1110 000 12578999999985 565 567
Q ss_pred ccCCCCCCccEEeecCCCCCCC
Q 038031 644 SSIVDLQNLTELHLWDCPKLKY 665 (729)
Q Consensus 644 ~~~~~l~~L~~L~l~~c~~l~~ 665 (729)
..+..+++|++|++++| .++.
T Consensus 392 ~~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSS-SCCH
T ss_pred HHHHhCCCccEEECCCC-CCCH
Confidence 77778889999999886 4443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.4e-17 Score=171.34 Aligned_cols=262 Identities=16% Similarity=0.132 Sum_probs=160.9
Q ss_pred EEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC--CCCCCeEEEec
Q 038031 385 EIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL--PPSLKQLTIWR 462 (729)
Q Consensus 385 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~ 462 (729)
..+.++ +.++.+|. ...++|++|++++|. ++.++...+ ..+++|++|+++++ .+..++...+ .++|+.|++++
T Consensus 35 ~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDL-QRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHHHh-ccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC
Confidence 344444 34555543 223455555555554 444444222 45555555555553 3333322211 13355555544
Q ss_pred CCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccC--cCCCC
Q 038031 463 CDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPK--GLHNL 540 (729)
Q Consensus 463 ~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~--~~~~l 540 (729)
+. ++.+ +...+. .++ +|+.|+++++ .+..+|. .+..+
T Consensus 110 n~-l~~~--~~~~~~----~l~--~L~~L~L~~n--------------------------------~l~~l~~~~~~~~l 148 (353)
T 2z80_A 110 NY-LSNL--SSSWFK----PLS--SLTFLNLLGN--------------------------------PYKTLGETSLFSHL 148 (353)
T ss_dssp SC-CSSC--CHHHHT----TCT--TCSEEECTTC--------------------------------CCSSSCSSCSCTTC
T ss_pred Cc-CCcC--CHhHhC----CCc--cCCEEECCCC--------------------------------CCcccCchhhhccC
Confidence 42 3333 333222 455 7778877763 2223343 46788
Q ss_pred CccceEEEccC-CCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccccc
Q 038031 541 SCLQELTIIGG-ALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRL 618 (729)
Q Consensus 541 ~~L~~L~l~~~-~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 618 (729)
++|++|++++| .+..++ ...+.+++|++|++++|.+....+ ..+..+++|++|++++|. +..+|....
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~----l~~~~~~~~-- 218 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP----KSLKSIQNVSHLILHMKQ----HILLLEIFV-- 218 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT----TTTTTCSEEEEEEEECSC----STTHHHHHH--
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH----HHHhccccCCeecCCCCc----cccchhhhh--
Confidence 99999999999 466665 456677999999999999877644 377899999999999998 667765431
Q ss_pred CCccCCCCCcceEEcccCCCccccc-cc---CCCCCCccEEeecCCCCCCC-----CCCC-CCCCccceeeccCCchhHH
Q 038031 619 GTALPLPASLTSLSISRFPNLERLS-SS---IVDLQNLTELHLWDCPKLKY-----FPEK-GLPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 619 ~~~~~~l~~L~~L~l~~~~~l~~l~-~~---~~~l~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~n~~l~~ 688 (729)
..+++|+.|++++ +.++.++ .. ....+.++.++++++ .+.. +|.. ..+++|++|++++|..- .
T Consensus 219 ----~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 219 ----DVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp ----HHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred ----hhcccccEEECCC-Cccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 2479999999999 5677654 22 234678899999885 3332 2221 23679999999999642 2
Q ss_pred hhhccCCCCcccccccceEEeCCeE
Q 038031 689 KCRKDGGQYWDLLTHIPCVKIDWER 713 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (729)
.....+..+++++.+.+++..
T Consensus 292 ----i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 292 ----VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSC
T ss_pred ----cCHHHHhcCCCCCEEEeeCCC
Confidence 111224567788888887764
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=8.8e-17 Score=165.47 Aligned_cols=135 Identities=21% Similarity=0.140 Sum_probs=101.2
Q ss_pred cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.+..+++|++|++++|.+..+. .....+++|++|++++|.+..... ...+..+++|++|++++|. +..++..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~----l~~~~~~ 193 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQ----LEQLSPT 193 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSC----CCEECTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc---hhHHhhCcCCCEEECCCCC----cCCcCHH
Confidence 4567889999999999777554 445667899999999998876322 3467889999999999988 5555332
Q ss_pred ccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC---CCccceeeccCCch
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL---PSSLLQLWISGCPL 685 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~n~~ 685 (729)
.+..+++|++|++++ +.++.++ ..+..+++|++|++++| .++..+...+ +++|++|++++|+.
T Consensus 194 ------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 194 ------AFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ------TTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ------HhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 124678999999999 5677776 46788999999999996 4554443222 35899999999975
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=3.3e-16 Score=170.49 Aligned_cols=238 Identities=17% Similarity=0.206 Sum_probs=157.3
Q ss_pred cEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCC--CCCCCeEEEe
Q 038031 384 REIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQL--PPSLKQLTIW 461 (729)
Q Consensus 384 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~ 461 (729)
..++.++ ..++.+|. ...+++++|++++|. +..++...+ ..+++|++|+++++ .+..++...+ .++|+.|+++
T Consensus 57 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQ-GIPSNTRYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCS-SCCSSCCS-CCCTTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECC-CCcCccCC-CCCCCccEEECcCCc-CceECHHHc-CCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence 3444444 34555553 233556666666555 444433322 55566666666553 3333332211 1345555555
Q ss_pred cCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccccc-CcCCCC
Q 038031 462 RCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALP-KGLHNL 540 (729)
Q Consensus 462 ~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~-~~~~~l 540 (729)
++. ++.+ +...+. .++ +|+.|+++++ .+..+| ..+..+
T Consensus 132 ~n~-l~~~--~~~~~~----~l~--~L~~L~L~~N--------------------------------~l~~~~~~~~~~l 170 (452)
T 3zyi_A 132 DNW-LTVI--PSGAFE----YLS--KLRELWLRNN--------------------------------PIESIPSYAFNRV 170 (452)
T ss_dssp SSC-CSBC--CTTTSS----SCT--TCCEEECCSC--------------------------------CCCEECTTTTTTC
T ss_pred CCc-CCcc--Chhhhc----ccC--CCCEEECCCC--------------------------------CcceeCHhHHhcC
Confidence 542 4444 444443 455 7888887773 122233 246788
Q ss_pred CccceEEEccC-CCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccccc
Q 038031 541 SCLQELTIIGG-ALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRL 618 (729)
Q Consensus 541 ~~L~~L~l~~~-~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 618 (729)
++|++|++++| .+..++ .....+++|++|++++|.+... ..+..+++|++|++++|. +..++...
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N~----l~~~~~~~--- 237 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNH----FPEIRPGS--- 237 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTSC----CSEECGGG---
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECcCCc----CcccCccc---
Confidence 99999999985 455555 3466679999999999988753 257889999999999998 66664322
Q ss_pred CCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 619 GTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 619 ~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
+..+++|+.|++++ +.++.++ ..+..+++|++|++++| .++.++...+ +++|+.|++++||.
T Consensus 238 ---~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 238 ---FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ---GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ---ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 25789999999999 5677664 78899999999999994 7888887644 78999999999983
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.9e-18 Score=178.68 Aligned_cols=219 Identities=15% Similarity=0.154 Sum_probs=161.7
Q ss_pred ccccCCCCccEEEeccCCCcccCCC--CCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCC
Q 038031 375 QSSLSLCSLREIEIYNCSSLVSFPE--VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLP 452 (729)
Q Consensus 375 ~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 452 (729)
..+..+++|++|++++ +.++.++. ...+++|++|++++|. +...+.. ..+++|++|++++| .+..++
T Consensus 28 ~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~l~~L~~L~Ls~n-~l~~l~----- 96 (317)
T 3o53_A 28 SLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNV-LYETLDL---ESLSTLRTLDLNNN-YVQELL----- 96 (317)
T ss_dssp HHHTTGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEE---TTCTTCCEEECCSS-EEEEEE-----
T ss_pred HHhccCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCc-CCcchhh---hhcCCCCEEECcCC-cccccc-----
Confidence 3445677889999988 46776653 3347888888888887 5444432 77788888888774 222111
Q ss_pred CCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccc
Q 038031 453 PSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEA 532 (729)
Q Consensus 453 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~ 532 (729)
..+ +|+.|+++++ .++.
T Consensus 97 -----------------------------~~~--~L~~L~l~~n-~l~~------------------------------- 113 (317)
T 3o53_A 97 -----------------------------VGP--SIETLHAANN-NISR------------------------------- 113 (317)
T ss_dssp -----------------------------ECT--TCCEEECCSS-CCSE-------------------------------
T ss_pred -----------------------------CCC--CcCEEECCCC-ccCC-------------------------------
Confidence 112 6777777663 2221
Q ss_pred ccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 533 LPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 533 l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
++ ...+++|++|++++|++..++ ...+.+++|++|++++|.+....+ ...+..+++|++|++++|. +..+
T Consensus 114 ~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~L~~N~----l~~~ 184 (317)
T 3o53_A 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---AELAASSDTLEHLNLQYNF----IYDV 184 (317)
T ss_dssp EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---GGGGGGTTTCCEEECTTSC----CCEE
T ss_pred cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH---HHHhhccCcCCEEECCCCc----Cccc
Confidence 11 123578999999999999886 355667999999999999887654 2233578999999999998 6666
Q ss_pred cccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCchh
Q 038031 612 PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPLI 686 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~l 686 (729)
+... .+++|++|++++ +.++.+|..+..+++|++|++++| .++.+|.. ..+++|+.|++++|+..
T Consensus 185 ~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 6543 489999999999 789999888999999999999995 78888875 34789999999999865
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=4.2e-20 Score=202.25 Aligned_cols=379 Identities=19% Similarity=0.161 Sum_probs=182.3
Q ss_pred CCCccEEEEccCCCCCcCC--C-CCCCCCCCeEEEcCCCCceEcCccccCCCCCCCCCCcceeeecccccccccccCCCC
Q 038031 122 FSNLVTLKFEDCGMCTALP--S-VGQLPSLKHLTVRGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDMQEWEDWIPHGSS 198 (729)
Q Consensus 122 ~~~L~~L~l~~~~~~~~l~--~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 198 (729)
.++|++|+++++. +...+ . +..+++|++|++++|. ++..+....... ...+++|++|+++++. +.+......
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-l~~~~~~~l- 76 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSA-LRVNPALAELNLRSNE-LGDVGVHCV- 76 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHH-HHTCTTCCEEECTTCC-CHHHHHHHH-
T ss_pred Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHH-HHhCCCcCEEeCCCCc-CChHHHHHH-
Confidence 3567888888765 32222 2 5678888888888874 332110000000 0114666666666542 221110000
Q ss_pred CCCccCC----ccceEeeccCccccccCCCCCCCccEEEEEccCCcccccCCCCcccEEEEeCCCCceeeccccccCccc
Q 038031 199 QGVERFP----KLRELQILRCSKLQGTLPEHLPALQMLAIYKCEKLSISITSLPALCKLVIGGCKKVVLRSATDHLGLQN 274 (729)
Q Consensus 199 ~~~~~~~----~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 274 (729)
...++ +|++|++++|. +...- +..+...+..+++|++|++++|.........
T Consensus 77 --~~~l~~~~~~L~~L~L~~n~-i~~~~--------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~------- 132 (461)
T 1z7x_W 77 --LQGLQTPSCKIQKLSLQNCC-LTGAG--------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQL------- 132 (461)
T ss_dssp --HHTTCSTTCCCCEEECTTSC-CBGGG--------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-------
T ss_pred --HHHHhhCCCceeEEEccCCC-CCHHH--------------HHHHHHHHccCCceeEEECCCCcCchHHHHH-------
Confidence 01122 45555555542 22000 0011224556667777777776532211000
Q ss_pred ceeecCCCCcccccCCCCCCCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhh
Q 038031 275 SVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCE 354 (729)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~ 354 (729)
+...+....++|++|++.++.-...........+..+++|+.|+++++. +.......... .+..
T Consensus 133 ------------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~---~l~~ 196 (461)
T 1z7x_W 133 ------------LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQ---GLKD 196 (461)
T ss_dssp ------------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH---HHHH
T ss_pred ------------HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHH---HHhc
Confidence 0000111244577777766542221111122345667788888888765 43322221111 1111
Q ss_pred ccCcccEEEeeecCCcc----cccccccCCCCccEEEeccCCCcccCC-----C--CCCcCCcceEEEecCCCCCc----
Q 038031 355 LSCRLEYLGLLYCEGLV----KLPQSSLSLCSLREIEIYNCSSLVSFP-----E--VALPSKLKKIQIRHCDALKS---- 419 (729)
Q Consensus 355 ~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~-----~--~~~~~~L~~L~l~~~~~l~~---- 419 (729)
..++|++|++++|.... .++..+..+++|++|++++| .++... . ...+++|++|++++|. ++.
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 274 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCG 274 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHH
Confidence 23578888888876433 24556667788888888874 454321 1 1125677777777775 544
Q ss_pred -cccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCC
Q 038031 420 -LPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPS 498 (729)
Q Consensus 420 -~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~ 498 (729)
++..+ ..+++|++|++++| .+.+.... .+ ...... ..+ +|+.|++++|.
T Consensus 275 ~l~~~l--~~~~~L~~L~Ls~n-~i~~~~~~------------------~l--~~~l~~----~~~--~L~~L~L~~n~- 324 (461)
T 1z7x_W 275 DLCRVL--RAKESLKELSLAGN-ELGDEGAR------------------LL--CETLLE----PGC--QLESLWVKSCS- 324 (461)
T ss_dssp HHHHHH--HHCTTCCEEECTTC-CCHHHHHH------------------HH--HHHHTS----TTC--CCCEEECTTSC-
T ss_pred HHHHHH--hhCCCcceEECCCC-CCchHHHH------------------HH--HHHhcc----CCc--cceeeEcCCCC-
Confidence 33322 44677777777764 23221100 00 000000 112 56666666542
Q ss_pred ccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-----C-CCCCCCCcceEEec
Q 038031 499 LTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-----E-EDGLPTNLQSLDIR 572 (729)
Q Consensus 499 l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-----~-~~~~~~~L~~L~L~ 572 (729)
++. .....++..+..+++|++|++++|.+.... . .....++|++|+++
T Consensus 325 l~~--------------------------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 325 FTA--------------------------ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp CBG--------------------------GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred Cch--------------------------HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 221 011122333455567777777777554332 0 11124577777777
Q ss_pred CchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 573 GNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
+|.+...........+..+++|++|++++|.
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 7776642110001245567777788887776
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.3e-16 Score=162.39 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=25.0
Q ss_pred cEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeec
Q 038031 384 REIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQY 439 (729)
Q Consensus 384 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 439 (729)
+.++.++ ..++.+|. ..+++|++|++++|. +..++...+ ..+++|++|++++
T Consensus 14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~ 65 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHS 65 (285)
T ss_dssp CEEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCS
T ss_pred eEEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCC
Confidence 3444444 34555542 234455555555554 444443322 4555555555555
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=5.2e-17 Score=167.44 Aligned_cols=224 Identities=16% Similarity=0.078 Sum_probs=113.7
Q ss_pred CcccEEEeee-cCCcccccccccCCCCccEEEeccCCCcc-cCCC-CCCcCCcceEEEecCCCCCccccccccCCCCCcc
Q 038031 357 CRLEYLGLLY-CEGLVKLPQSSLSLCSLREIEIYNCSSLV-SFPE-VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLE 433 (729)
Q Consensus 357 ~~L~~L~L~~-~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 433 (729)
++|++|++++ +...+.+|..+..+++|++|++++| .++ .+|. ...+++|++|++++|.....+|..+ ..+++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCC
Confidence 6666666664 4444456666666777777777664 343 4443 2236677777777666333455443 5667777
Q ss_pred EEEeecCCCccccccc--CCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccc
Q 038031 434 ILNIQYCCSLRYIVEV--QLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPAT 511 (729)
Q Consensus 434 ~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 511 (729)
+|++++|.-...++.. .+++ +|+.|+++++ .++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~---------------------------------~L~~L~L~~N-~l~----------- 187 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSK---------------------------------LFTSMTISRN-RLT----------- 187 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCT---------------------------------TCCEEECCSS-EEE-----------
T ss_pred eEECcCCcccCcCCHHHhhhhh---------------------------------cCcEEECcCC-eee-----------
Confidence 7777664221122111 1111 3333333331 010
Q ss_pred cccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCC
Q 038031 512 LESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHR 590 (729)
Q Consensus 512 L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 590 (729)
..+|..+..++ |++|++++|.+.... .....+++|++|++++|.+....+ .+..
T Consensus 188 -------------------~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~ 242 (313)
T 1ogq_A 188 -------------------GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGL 242 (313)
T ss_dssp -------------------EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCC
T ss_pred -------------------ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccc
Confidence 01122223333 555555555444222 333444556666666655544332 2455
Q ss_pred CCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCC
Q 038031 591 FSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLK 664 (729)
Q Consensus 591 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 664 (729)
+++|++|++++|.. .+.+|... ..+++|+.|++++|.....+|.. ..+++|+.+++++|+.+.
T Consensus 243 l~~L~~L~Ls~N~l---~~~~p~~l-------~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 243 SKNLNGLDLRNNRI---YGTLPQGL-------TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CTTCCEEECCSSCC---EECCCGGG-------GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCCCCEEECcCCcc---cCcCChHH-------hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 66666666666662 22445443 25566677777663322245443 666677777777665443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.5e-17 Score=179.26 Aligned_cols=243 Identities=11% Similarity=0.059 Sum_probs=132.8
Q ss_pred HhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCC
Q 038031 349 QQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDT 428 (729)
Q Consensus 349 ~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 428 (729)
+..+...+++|++|++++|......|..+..+++|++|++++| .++.+++...+++|++|++++|. +..++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCC------
Confidence 3333334468888888888765555667888888888888884 56655445557888888888876 555443
Q ss_pred CCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCC
Q 038031 429 NSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNEL 508 (729)
Q Consensus 429 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~ 508 (729)
.++|++|++++| .+..++...+ ++|+.|+++++. ++.+ +...+. .++ +|+.|+++++ .++.
T Consensus 98 ~~~L~~L~L~~N-~l~~~~~~~l-~~L~~L~L~~N~-l~~~--~~~~~~----~l~--~L~~L~Ls~N-~l~~------- 158 (487)
T 3oja_A 98 GPSIETLHAANN-NISRVSCSRG-QGKKNIYLANNK-ITML--RDLDEG----CRS--RVQYLDLKLN-EIDT------- 158 (487)
T ss_dssp CTTCCEEECCSS-CCCCEEECCC-SSCEEEECCSSC-CCSG--GGBCGG----GGS--SEEEEECTTS-CCCE-------
T ss_pred CCCcCEEECcCC-cCCCCCcccc-CCCCEEECCCCC-CCCC--Cchhhc----CCC--CCCEEECCCC-CCCC-------
Confidence 267777877774 3444433332 335555555543 3322 111111 233 5555555442 1111
Q ss_pred ccccccccccccccccccCcccccccCcC-CCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCC
Q 038031 509 PATLESLEVGNLPPSLKSLSRLEALPKGL-HNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRG 587 (729)
Q Consensus 509 ~~~L~~L~~~~~~~~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 587 (729)
..|..+ ..+++|++|++++|.+..++... .+++|++|++++|.+....+ .
T Consensus 159 -----------------------~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-----~ 209 (487)
T 3oja_A 159 -----------------------VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGP-----E 209 (487)
T ss_dssp -----------------------EEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECG-----G
T ss_pred -----------------------cChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCH-----h
Confidence 012222 24566666666666555554322 24566666666665554322 2
Q ss_pred CCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCc-ccccccCCCCCCccEEeec
Q 038031 588 FHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNL-ERLSSSIVDLQNLTELHLW 658 (729)
Q Consensus 588 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~ 658 (729)
+..+++|+.|++++|. +..+|... ..+++|+.|++++|+.. ..+|..+..+++|+.++++
T Consensus 210 ~~~l~~L~~L~Ls~N~----l~~lp~~l-------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 FQSAAGVTWISLRNNK----LVLIEKAL-------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGTTCSEEECTTSC----CCEECTTC-------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCCccEEEecCCc----Ccccchhh-------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4555666666666665 44455433 24556666666663322 2444455555555555553
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=3.4e-16 Score=154.74 Aligned_cols=174 Identities=12% Similarity=0.103 Sum_probs=126.9
Q ss_pred ccceEEecCCCCccccccCCCC--ccccccccccccccccccCcccccccC-cCCCCCccceEEEccCCCCCCCCCCCCC
Q 038031 487 LLEKLEIWDCPSLTCIFSKNEL--PATLESLEVGNLPPSLKSLSRLEALPK-GLHNLSCLQELTIIGGALPSLEEEDGLP 563 (729)
Q Consensus 487 ~L~~L~l~~c~~l~~~~~~~~~--~~~L~~L~~~~~~~~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~~ 563 (729)
+|+.|+++++..++. ++...+ .++|++| ++.+|+.++.++. .+..+++|++|++++|++..++. ...+
T Consensus 56 ~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L-------~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l 126 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQ-LESHSFYNLSKVTHI-------EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV 126 (239)
T ss_dssp TCCEEEEECCSSCCE-ECTTTEESCTTCCEE-------EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC
T ss_pred CCcEEeCCCCCCcce-eCHhHcCCCcCCcEE-------ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc
Confidence 555555555433444 332222 1345555 5555455555553 46789999999999999998886 5566
Q ss_pred CCcc---eEEecCc-hhhhhhhhhccCCCCCCCCcc-eeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCC
Q 038031 564 TNLQ---SLDIRGN-MEICKSLIERGRGFHRFSSLR-HLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPN 638 (729)
Q Consensus 564 ~~L~---~L~L~~~-~~~~~~~~~~~~~l~~l~~L~-~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 638 (729)
++|+ +|++++| .+.... ...+..+++|+ +|++++|. +..+|.... ..++|+.|++++|..
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~n~----l~~i~~~~~-------~~~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYNNG----FTSVQGYAF-------NGTKLDAVYLNKNKY 191 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCSCC----CCEECTTTT-------TTCEEEEEECTTCTT
T ss_pred cccccccEEECCCCcchhhcC----cccccchhcceeEEEcCCCC----CcccCHhhc-------CCCCCCEEEcCCCCC
Confidence 7787 9999999 665443 34688999999 99999998 778877542 338999999999656
Q ss_pred ccccc-ccCCCC-CCccEEeecCCCCCCCCCCCCCCCccceeeccCCchh
Q 038031 639 LERLS-SSIVDL-QNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPLI 686 (729)
Q Consensus 639 l~~l~-~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~l 686 (729)
++.++ ..+..+ ++|++|++++ +.++.+|.. .+++|+.|++++++.+
T Consensus 192 l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 192 LTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred cccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 98887 678889 9999999999 678888875 5789999999988753
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.8e-16 Score=160.68 Aligned_cols=114 Identities=21% Similarity=0.146 Sum_probs=83.3
Q ss_pred cCcCCCCCccceEEEccCCCCC--CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALPS--LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
+..+..+++|++|++++|.+.. ++.....+++|++|++++|.+....+ ..+..+++|++|++++|. +..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~----l~~~ 214 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNN----FFSL 214 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSC----CSBC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCc----cCcc
Confidence 3445677888888888887764 45566667888888888888776543 366788899999999988 6666
Q ss_pred cccccccCCccCCCCCcceEEcccCCCcccccccCCCCC-CccEEeecCCC
Q 038031 612 PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQ-NLTELHLWDCP 661 (729)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~ 661 (729)
+... +..+++|+.|++++|......+..+..++ +|++|++++|+
T Consensus 215 ~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 215 DTFP------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CSGG------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred Chhh------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 5422 24678999999999543334456777774 89999999964
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.8e-15 Score=158.62 Aligned_cols=229 Identities=20% Similarity=0.193 Sum_probs=137.2
Q ss_pred cccccccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCccccc
Q 038031 370 LVKLPQSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIV 447 (729)
Q Consensus 370 l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 447 (729)
++.+|..+ .+++++|++++ +.++.++...+ +++|++|++++|..++.++...+ .++++++++.+.+++.+..++
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEEC
T ss_pred CCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCcccccC
Confidence 44455433 24556666655 45555554332 55666666666554444544433 455555554444444555444
Q ss_pred ccCC--CCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccc
Q 038031 448 EVQL--PPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLK 525 (729)
Q Consensus 448 ~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~ 525 (729)
...+ .++|+.|++.++. ++.+ +...+. ... ++..+++.++..+
T Consensus 97 ~~~f~~l~~L~~L~l~~n~-l~~~--~~~~~~----~~~--~l~~l~l~~~~~i-------------------------- 141 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTG-IKHL--PDVHKI----HSL--QKVLLDIQDNINI-------------------------- 141 (350)
T ss_dssp TTSBCCCTTCCEEEEEEEC-CSSC--CCCTTC----CBS--SCEEEEEESCTTC--------------------------
T ss_pred chhhhhccccccccccccc-cccC--Cchhhc----ccc--hhhhhhhcccccc--------------------------
Confidence 3221 1335555554432 3322 221111 111 3444555443333
Q ss_pred cCcccccccC-cCCCC-CccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 526 SLSRLEALPK-GLHNL-SCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 526 ~~~~l~~l~~-~~~~l-~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
..++. .+..+ ..++.|++++|+|..++.......+|++|++.+++....++ ...|..+++|++|++++|.
T Consensus 142 -----~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 142 -----HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP---NDVFHGASGPVILDISRTR 213 (350)
T ss_dssp -----CEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSC
T ss_pred -----ccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC---HHHhccCcccchhhcCCCC
Confidence 33332 23333 36788999999888888655556789999998766666555 4567889999999999988
Q ss_pred CccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecC
Q 038031 604 DDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWD 659 (729)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 659 (729)
+..+|... +.+|+.|.+.+++.++.+| .+..+++|+.+++.+
T Consensus 214 ----l~~lp~~~---------~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 ----IHSLPSYG---------LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CCCCCSSS---------CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ----cCccChhh---------hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 88888643 5888888888888888887 478888999998854
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.2e-15 Score=150.75 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=55.3
Q ss_pred eEEEccC-CCCCCCC-CCCCCCCcc-eEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCc
Q 038031 545 ELTIIGG-ALPSLEE-EDGLPTNLQ-SLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTA 621 (729)
Q Consensus 545 ~L~l~~~-~i~~l~~-~~~~~~~L~-~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~ 621 (729)
+|++++| .+..+++ ....+++|+ +|++++|.+... + ...+.. ++|++|++++|.. +..+|...
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~---~~~~~~-~~L~~L~L~~n~~---l~~i~~~~------ 199 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-Q---GYAFNG-TKLDAVYLNKNKY---LTVIDKDA------ 199 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-C---TTTTTT-CEEEEEECTTCTT---CCEECTTT------
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-C---HhhcCC-CCCCEEEcCCCCC---cccCCHHH------
Confidence 6666666 5555552 244456666 666666655522 2 123333 5666777766621 44444322
Q ss_pred cCCC-CCcceEEcccCCCcccccccCCCCCCccEEeecCCC
Q 038031 622 LPLP-ASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 622 ~~~l-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
+..+ ++|+.|++++ +.++.+|.. .+++|+.|+++++.
T Consensus 200 ~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC-
T ss_pred hhccccCCcEEECCC-CccccCChh--HhccCceeeccCcc
Confidence 2345 6677777777 566666643 56677777776654
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2.5e-15 Score=152.84 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=143.1
Q ss_pred ceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC--CCCCCCeEEEecCCCCcccccccCcccccccccc
Q 038031 407 KKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ--LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYT 484 (729)
Q Consensus 407 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~ 484 (729)
++++.++.. ++.+|... .++|++|+++++ .+..++... -.++|+.|+++++. ++.+ ....+. .++
T Consensus 14 ~~~~c~~~~-l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~----~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARI--DAAAFT----GLA 80 (285)
T ss_dssp CEEECCSSC-CSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEE--CTTTTT----TCT
T ss_pred eEEEcCcCC-cccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-ccee--CHhhcC----Ccc
Confidence 455555444 55565432 356677777663 444444321 12345566555542 3333 222222 334
Q ss_pred ccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccc-cCcCCCCCccceEEEccCCCCCCC-CCCCC
Q 038031 485 SSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEAL-PKGLHNLSCLQELTIIGGALPSLE-EEDGL 562 (729)
Q Consensus 485 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~ 562 (729)
+|+.|+++++ ..+..+ |..+..+++|++|++++|.+..++ .....
T Consensus 81 --~L~~L~l~~n-------------------------------~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 127 (285)
T 1ozn_A 81 --LLEQLDLSDN-------------------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127 (285)
T ss_dssp --TCCEEECCSC-------------------------------TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred --CCCEEeCCCC-------------------------------CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC
Confidence 5555555543 334444 445678889999999999888775 45566
Q ss_pred CCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccc
Q 038031 563 PTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERL 642 (729)
Q Consensus 563 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 642 (729)
+++|++|++++|.+....+ ..+..+++|++|++++|. +..++... +..+++|+.|++++ +.++.+
T Consensus 128 l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~----l~~~~~~~------~~~l~~L~~L~l~~-n~l~~~ 192 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNR----ISSVPERA------FRGLHSLDRLLLHQ-NRVAHV 192 (285)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCEECTTT------TTTCTTCCEEECCS-SCCCEE
T ss_pred CcCCCEEECCCCcccccCH----hHhccCCCccEEECCCCc----ccccCHHH------hcCccccCEEECCC-Cccccc
Confidence 7899999999998775432 357888999999999988 66666532 24678999999999 456655
Q ss_pred -cccCCCCCCccEEeecCCCCCCCCCCC--CCCCccceeeccCCchh
Q 038031 643 -SSSIVDLQNLTELHLWDCPKLKYFPEK--GLPSSLLQLWISGCPLI 686 (729)
Q Consensus 643 -~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~l 686 (729)
|..+..+++|++|++++| .++.++.. ..+++|+.|++++|+..
T Consensus 193 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 678888999999999994 67777653 33788999999999753
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=4.6e-15 Score=150.81 Aligned_cols=201 Identities=19% Similarity=0.178 Sum_probs=136.9
Q ss_pred cccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCC
Q 038031 376 SSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSL 455 (729)
Q Consensus 376 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 455 (729)
.+.++++++++++++ +.++.+|.. ..+++++|++++|. +..++...+ ..+++|++|+++++ .+..++...
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~~ip~~-~~~~l~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~----- 74 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLTALPPD-LPKDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDRA-ELTKLQVDG----- 74 (290)
T ss_dssp EEECSTTCCEEECTT-SCCSSCCSC-CCTTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTTS-CCCEEECCS-----
T ss_pred cccccCCccEEECCC-CCCCcCCCC-CCCCCCEEEcCCCc-CCccCHHHh-hcCCCCCEEECCCC-ccCcccCCC-----
Confidence 356788899999988 678888753 35789999999988 666654444 78889999999874 333322111
Q ss_pred CeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccC
Q 038031 456 KQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPK 535 (729)
Q Consensus 456 ~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~ 535 (729)
.++ +|+.|+++++ .+..+|.
T Consensus 75 --------------------------~l~--~L~~L~Ls~N--------------------------------~l~~l~~ 94 (290)
T 1p9a_G 75 --------------------------TLP--VLGTLDLSHN--------------------------------QLQSLPL 94 (290)
T ss_dssp --------------------------CCT--TCCEEECCSS--------------------------------CCSSCCC
T ss_pred --------------------------CCC--cCCEEECCCC--------------------------------cCCcCch
Confidence 233 6666666652 2223444
Q ss_pred cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.+..+++|++|++++|++..++ ..+..+++|++|++++|.+.... ...+..+++|++|++++|. +..+|..
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~----l~~l~~~ 166 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSLANNN----LTELPAG 166 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSC----CSCCCTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEECCCCc----CCccCHH
Confidence 5566777788888888777776 44555677777777777766443 2356677788888888877 6666653
Q ss_pred ccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCC
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
. +..+++|+.|++++ +.++.+|.++..+++|+.+++++|+
T Consensus 167 ~------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 167 L------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp T------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred H------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 3 24567788888877 6677777777777778888887754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=4e-15 Score=151.27 Aligned_cols=199 Identities=23% Similarity=0.234 Sum_probs=148.1
Q ss_pred CCCCCccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCC
Q 038031 427 DTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKN 506 (729)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~ 506 (729)
..+++++++++++ ..++.++. .++++++.|+++++. ++.+ +...+. .++ +|+.|+++++ .+
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip~-~~~~~l~~L~L~~N~-l~~~--~~~~~~----~l~--~L~~L~L~~n-~l------- 67 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALPP-DLPKDTTILHLSENL-LYTF--SLATLM----PYT--RLTQLNLDRA-EL------- 67 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCCS-CCCTTCCEEECTTSC-CSEE--EGGGGT----TCT--TCCEEECTTS-CC-------
T ss_pred cccCCccEEECCC-CCCCcCCC-CCCCCCCEEEcCCCc-CCcc--CHHHhh----cCC--CCCEEECCCC-cc-------
Confidence 4556666666665 34444443 234556666666654 4444 333333 456 8888888773 22
Q ss_pred CCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccC
Q 038031 507 ELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGR 586 (729)
Q Consensus 507 ~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 586 (729)
..++.. ..+++|++|++++|++..++.....+++|++|++++|.+....+ .
T Consensus 68 ------------------------~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~ 118 (290)
T 1p9a_G 68 ------------------------TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----G 118 (290)
T ss_dssp ------------------------CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----S
T ss_pred ------------------------CcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH----H
Confidence 222222 57889999999999999998777788999999999999876542 4
Q ss_pred CCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCCCCCC
Q 038031 587 GFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCPKLKY 665 (729)
Q Consensus 587 ~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 665 (729)
.|..+++|++|++++|. +..+|... +..+++|+.|++++ +.++.+|. .+..+++|++|++++ +.++.
T Consensus 119 ~~~~l~~L~~L~L~~N~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ 186 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNE----LKTLPPGL------LTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYT 186 (290)
T ss_dssp TTTTCTTCCEEECTTSC----CCCCCTTT------TTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCC
T ss_pred HHcCCCCCCEEECCCCC----CCccChhh------cccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCc
Confidence 68899999999999998 77777643 35789999999999 78999984 568899999999999 57889
Q ss_pred CCCCCC-CCccceeeccCCch
Q 038031 666 FPEKGL-PSSLLQLWISGCPL 685 (729)
Q Consensus 666 l~~~~~-~~~L~~L~l~~n~~ 685 (729)
+|.... ..+|+.+++++||.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCB
T ss_pred cChhhcccccCCeEEeCCCCc
Confidence 988644 67899999999985
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.6e-17 Score=167.23 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCc
Q 038031 625 PASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCP 684 (729)
Q Consensus 625 l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~ 684 (729)
+++|++|++++ +.++.+|..+. ++|++|++++ +.++.+|....+++|++|++++|+
T Consensus 252 l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 45555555555 34445554333 5555555555 344444442334555555555554
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.5e-15 Score=166.35 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=152.6
Q ss_pred cCCCCccEEEeccCCCcccCCC--CCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCC
Q 038031 378 LSLCSLREIEIYNCSSLVSFPE--VALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSL 455 (729)
Q Consensus 378 ~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 455 (729)
..+++|++|++++ +.++.+++ ...+++|++|++++|. +...+.. ..+++|++|++++| .+..++.. ++|
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l---~~l~~L~~L~Ls~N-~l~~l~~~---~~L 101 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNV-LYETLDL---ESLSTLRTLDLNNN-YVQELLVG---PSI 101 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEEC---TTCTTCCEEECCSS-EEEEEEEC---TTC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCccc---ccCCCCCEEEecCC-cCCCCCCC---CCc
Confidence 3456899999998 46777764 3348899999999988 5544442 78899999999885 45544432 457
Q ss_pred CeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccC
Q 038031 456 KQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPK 535 (729)
Q Consensus 456 ~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~ 535 (729)
+.|+++++. ++.+ +.. .++ +|+.|+++++ .++. ..|.
T Consensus 102 ~~L~L~~N~-l~~~--~~~-------~l~--~L~~L~L~~N-~l~~------------------------------~~~~ 138 (487)
T 3oja_A 102 ETLHAANNN-ISRV--SCS-------RGQ--GKKNIYLANN-KITM------------------------------LRDL 138 (487)
T ss_dssp CEEECCSSC-CCCE--EEC-------CCS--SCEEEECCSS-CCCS------------------------------GGGB
T ss_pred CEEECcCCc-CCCC--Ccc-------ccC--CCCEEECCCC-CCCC------------------------------CCch
Confidence 777776654 4433 211 223 5666666553 1111 1233
Q ss_pred cCCCCCccceEEEccCCCCCCC-C-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-E-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPL 613 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~ 613 (729)
.+..+++|+.|++++|.+..+. . ..+.+++|++|++++|.+.... ....+++|+.|++++|. +..+|.
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~----l~~~~~ 208 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNK----LAFMGP 208 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSC----CCEECG
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCC----CCCCCH
Confidence 4566788888888888777644 2 2235678888888888876542 23457888888888887 666665
Q ss_pred cccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCC-CCCCCC-CCCCccceeecc
Q 038031 614 EDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKL-KYFPEK-GLPSSLLQLWIS 681 (729)
Q Consensus 614 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~-~~~~~L~~L~l~ 681 (729)
.. ..+++|+.|++++ +.++.+|..+..+++|+.|++++|+.. ..+|.. +.++.|+.+++.
T Consensus 209 ~~-------~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hH-------cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44 3678888888888 667778877788888888888886432 122221 224455656554
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.2e-14 Score=146.45 Aligned_cols=133 Identities=24% Similarity=0.284 Sum_probs=95.4
Q ss_pred CCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
+..+++|++|++++|.+..++ .....+++|++|++++|.+....+ ..+..+++|++|++++|. +..+|...
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~----l~~~~~~~ 152 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGYNE----LQSLPKGV 152 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCCCCTTT
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCCCc----CCccCHhH
Confidence 466778888888888777776 344556788888888887765433 356778888888888887 66666532
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
+..+++|+.|++++ +.++.++ ..+..+++|++|++++| .++.++...+ +++|+.|++++||.
T Consensus 153 ------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 153 ------FDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------ccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 24678888888888 5677776 45777888888888884 6777776533 67888888888874
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3e-14 Score=149.23 Aligned_cols=240 Identities=18% Similarity=0.163 Sum_probs=177.6
Q ss_pred cEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCC--CCCCeEEEe
Q 038031 384 REIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLP--PSLKQLTIW 461 (729)
Q Consensus 384 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~ 461 (729)
+.++.++ ++++.+|.. .++++++|++++|. ++.++...| .++++|++|++++|.....++...+. +++..+...
T Consensus 12 ~~v~C~~-~~Lt~iP~~-l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSD-LPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTT-CCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcC-cCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5677777 689999853 46799999999988 888987666 89999999999997655555554332 346666666
Q ss_pred cCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccC-cCCCC
Q 038031 462 RCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPK-GLHNL 540 (729)
Q Consensus 462 ~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~-~~~~l 540 (729)
++.+++.+ +.+.+. .++ +|+.|+++++ .++ .+|. .+...
T Consensus 88 ~~N~l~~l--~~~~f~----~l~--~L~~L~l~~n-~l~-------------------------------~~~~~~~~~~ 127 (350)
T 4ay9_X 88 KANNLLYI--NPEAFQ----NLP--NLQYLLISNT-GIK-------------------------------HLPDVHKIHS 127 (350)
T ss_dssp EETTCCEE--CTTSBC----CCT--TCCEEEEEEE-CCS-------------------------------SCCCCTTCCB
T ss_pred cCCccccc--Cchhhh----hcc--cccccccccc-ccc-------------------------------cCCchhhccc
Confidence 66778877 666665 677 8888888773 222 2221 23345
Q ss_pred CccceEEEcc-CCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccc
Q 038031 541 SCLQELTIIG-GALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKR 617 (729)
Q Consensus 541 ~~L~~L~l~~-~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 617 (729)
.++..|++.+ +.+..++ .+.+....++.|++++|.+..... ......+|++|++++|+. ++.+|...
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l~l~~~n~---l~~i~~~~-- 197 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNN---LEELPNDV-- 197 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEEECTTCTT---CCCCCTTT--
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHHhhccCCc---ccCCCHHH--
Confidence 6778888866 4566666 334455689999999998876432 334567899999987554 88888643
Q ss_pred cCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCc
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCP 684 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~ 684 (729)
|..+++|+.|++++ +.++.+|. ..+.+|+.|.+.+++.++.+|....+++|+.+++.++.
T Consensus 198 ----f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 198 ----FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp ----TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred ----hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 35789999999999 78999985 34788899999999999999986668899999997543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.5e-14 Score=142.95 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=127.7
Q ss_pred CCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEE
Q 038031 381 CSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTI 460 (729)
Q Consensus 381 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 460 (729)
.+.+.+++++ +.++.+|. ...+++++|++++|. +..++...+ ..+++|++|+++++ .+..++
T Consensus 16 ~~~~~l~~~~-~~l~~ip~-~~~~~l~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~i~------------- 77 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLTAIPS-NIPADTKKLDLQSNK-LSSLPSKAF-HRLTKLRLLYLNDN-KLQTLP------------- 77 (270)
T ss_dssp TTTTEEECTT-SCCSSCCS-CCCTTCSEEECCSSC-CSCCCTTSS-SSCTTCCEEECCSS-CCSCCC-------------
T ss_pred CCCCEEEccC-CCCCccCC-CCCCCCCEEECcCCC-CCeeCHHHh-cCCCCCCEEECCCC-ccCeeC-------------
Confidence 3466777776 56777764 334677788887776 556655433 66777777777764 222222
Q ss_pred ecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccccc-CcCCC
Q 038031 461 WRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALP-KGLHN 539 (729)
Q Consensus 461 ~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~-~~~~~ 539 (729)
...+. .++ +|+.|+++++ .++ .+| ..+..
T Consensus 78 ------------~~~~~----~l~--~L~~L~l~~n-~l~-------------------------------~~~~~~~~~ 107 (270)
T 2o6q_A 78 ------------AGIFK----ELK--NLETLWVTDN-KLQ-------------------------------ALPIGVFDQ 107 (270)
T ss_dssp ------------TTTTS----SCT--TCCEEECCSS-CCC-------------------------------CCCTTTTTT
T ss_pred ------------hhhhc----CCC--CCCEEECCCC-cCC-------------------------------cCCHhHccc
Confidence 22211 233 6666666552 111 122 22456
Q ss_pred CCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccccc
Q 038031 540 LSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRL 618 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 618 (729)
+++|++|++++|++..++ ..+..+++|++|++++|.+..... ..+..+++|++|++++|. +..++...
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~----l~~~~~~~--- 176 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNNQ----LKRVPEGA--- 176 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CSCCCTTT---
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCCc----CcEeChhH---
Confidence 677778888877777766 334566788888888877665432 346778888888888887 66666532
Q ss_pred CCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 619 GTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 619 ~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
+..+++|+.|++++ +.++.+| ..+..+++|++|++++|+
T Consensus 177 ---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 177 ---FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 24678899999988 5777777 457788999999998864
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=4.7e-16 Score=160.31 Aligned_cols=242 Identities=20% Similarity=0.197 Sum_probs=149.9
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCccc--CCCCC--------CcCCcceEEEecCCCCCcccccccc
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVS--FPEVA--------LPSKLKKIQIRHCDALKSLPEAWMC 426 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~--------~~~~L~~L~l~~~~~l~~~~~~~~~ 426 (729)
++|++|++++|.. .+|..+... |+.|++++ +.++. ++... .+++|++|++++|.....+|..++.
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH--Hhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 6778888887775 556544433 77777777 34533 23222 2578888888888744456655433
Q ss_pred CCCCCccEEEeecCCCccccccc--C----CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCcc
Q 038031 427 DTNSSLEILNIQYCCSLRYIVEV--Q----LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLT 500 (729)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~~~~~--~----~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~ 500 (729)
..+++|++|+++++ .+...+.. . .+++|+.|+++++. ++.+ +...+. .++ +|+.|+++++.-..
T Consensus 118 ~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~--~~~~~~----~l~--~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNF--SCEQVR----VFP--ALSTLDLSDNPELG 187 (312)
T ss_dssp CCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCC--CTTTCC----CCS--SCCEEECCSCTTCH
T ss_pred hcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccc--hHHHhc----cCC--CCCEEECCCCCcCc
Confidence 56788888888774 44443211 1 12567777777764 4444 333333 455 67777766642111
Q ss_pred ccccCCCCccccccccccccccccccCcccccccCc--CCCCCccceEEEccCCCCCCC----CCCCCCCCcceEEecCc
Q 038031 501 CIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKG--LHNLSCLQELTIIGGALPSLE----EEDGLPTNLQSLDIRGN 574 (729)
Q Consensus 501 ~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~--~~~l~~L~~L~l~~~~i~~l~----~~~~~~~~L~~L~L~~~ 574 (729)
. ..++.. +..+++|++|++++|++..++ .....+++|++|++++|
T Consensus 188 ~-----------------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 188 E-----------------------------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp H-----------------------------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred c-----------------------------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 0 001111 256778888888888777543 22234478888888888
Q ss_pred hhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccE
Q 038031 575 MEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTE 654 (729)
Q Consensus 575 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 654 (729)
.+....+ ...+..+++|++|++++|. +..+|... .++|++|++++ +.++.+|. +..+++|++
T Consensus 239 ~l~~~~~---~~~~~~l~~L~~L~Ls~N~----l~~ip~~~---------~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 239 SLRDAAG---APSCDWPSQLNSLNLSFTG----LKQVPKGL---------PAKLSVLDLSY-NRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp CCCSSCC---CSCCCCCTTCCEEECTTSC----CSSCCSSC---------CSEEEEEECCS-SCCCSCCC-TTTSCEEEE
T ss_pred cCCcccc---hhhhhhcCCCCEEECCCCc----cChhhhhc---------cCCceEEECCC-CCCCCChh-HhhCCCCCE
Confidence 7776542 2345567788888888887 66777644 27888888888 66777765 777888888
Q ss_pred EeecCC
Q 038031 655 LHLWDC 660 (729)
Q Consensus 655 L~l~~c 660 (729)
|++++|
T Consensus 301 L~L~~N 306 (312)
T 1wwl_A 301 LSLKGN 306 (312)
T ss_dssp EECTTC
T ss_pred EeccCC
Confidence 888885
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.5e-14 Score=146.26 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred CCCCCccceEEEccCCCCC--CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcc----eeeeccCCCcccccc
Q 038031 537 LHNLSCLQELTIIGGALPS--LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLR----HLTIGGCDDDTVMVS 610 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~----~L~ls~n~~~~~~~~ 610 (729)
+..+++|++|++++|.+.. ++...+.+++|++|++++|.+....+ ..+..+++|+ .|++++|. +..
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L~ls~n~----l~~ 191 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNP----MNF 191 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEEEECCSSC----CCE
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccceeeecCCCc----ccc
Confidence 4556666777777766655 33444445666666666666554322 1333344444 66666666 555
Q ss_pred ccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCC
Q 038031 611 FPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 660 (729)
++.... ...+|+.|++++ +.++.+| ..+..+++|++|++++|
T Consensus 192 ~~~~~~-------~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 192 IQPGAF-------KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECTTSS-------CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cCcccc-------CCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 544331 234667777776 4466665 33466667777777664
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.1e-13 Score=139.86 Aligned_cols=136 Identities=26% Similarity=0.343 Sum_probs=107.5
Q ss_pred CcCCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccc
Q 038031 535 KGLHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPL 613 (729)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~ 613 (729)
..+..+++|++|++++|.+..++. ..+.+++|++|++++|.+..... ...+..+++|++|++++|. +..++.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---~~~~~~l~~L~~L~Ls~N~----l~~~~~ 166 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL---PEYFSNLTNLEHLDLSSNK----IQSIYC 166 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC---CGGGGGCTTCCEEECCSSC----CCEECG
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC---chhhccCCCCCEEECCCCC----CCcCCH
Confidence 457889999999999999988874 56777999999999998876321 2367889999999999998 666654
Q ss_pred cccccCCccCCCCCcc----eEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 614 EDKRLGTALPLPASLT----SLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 614 ~~~~~~~~~~~l~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
.. +..+++|+ .|++++ +.++.++.......+|++|++++| .++.++...+ +++|+.|++++||.
T Consensus 167 ~~------~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 167 TD------LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GG------GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred HH------hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 22 12345555 899999 778888866666679999999995 6888887543 78999999998864
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=7.3e-14 Score=140.74 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeec
Q 038031 379 SLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQY 439 (729)
Q Consensus 379 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 439 (729)
.+++|+.|++++ +.++.++....+++|++|++++|. +..++.. ..+++|++|++++
T Consensus 39 ~l~~L~~L~l~~-~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 39 ELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNK-LHDISAL---KELTNLTYLILTG 94 (272)
T ss_dssp HHTTCCEEECTT-SCCCCCTTGGGCTTCCEEECTTSC-CCCCGGG---TTCTTCCEEECTT
T ss_pred cccceeeeeeCC-CCcccccccccCCCCcEEECCCCC-CCCchhh---cCCCCCCEEECCC
Confidence 344555555554 234444443444555555555544 3333321 4455555555554
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=8.6e-14 Score=142.84 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=111.7
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
++|++|++++|. ++.++ .+..+++|++|++++| .++.++....+++|++|++++|. +..++.. ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSAI---AGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGGG---TTCTTCCEEE
T ss_pred CCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCchhh---cCCCCCCEEE
Confidence 566666666654 33343 3555666666666663 45555544445666666666665 4444422 5556666666
Q ss_pred eecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccccccc
Q 038031 437 IQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLE 516 (729)
Q Consensus 437 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 516 (729)
+++| .+..++. +. .++ +|+.|+++++ .++.
T Consensus 114 l~~n-~l~~~~~---------------------------l~----~l~--~L~~L~l~~n-~l~~--------------- 143 (308)
T 1h6u_A 114 LTST-QITDVTP---------------------------LA----GLS--NLQVLYLDLN-QITN--------------- 143 (308)
T ss_dssp CTTS-CCCCCGG---------------------------GT----TCT--TCCEEECCSS-CCCC---------------
T ss_pred CCCC-CCCCchh---------------------------hc----CCC--CCCEEECCCC-ccCc---------------
Confidence 6553 2222111 11 334 6666666653 1111
Q ss_pred ccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcce
Q 038031 517 VGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRH 596 (729)
Q Consensus 517 ~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~ 596 (729)
++. +..+++|++|++++|.+..++. ...+++|++|++++|.+.... .+..+++|++
T Consensus 144 ----------------~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~ 199 (308)
T 1h6u_A 144 ----------------ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS------PLASLPNLIE 199 (308)
T ss_dssp ----------------CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------GGGGCTTCCE
T ss_pred ----------------Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh------hhcCCCCCCE
Confidence 111 3456677777777777766665 455577777777777665432 2566778888
Q ss_pred eeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc
Q 038031 597 LTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS 644 (729)
Q Consensus 597 L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 644 (729)
|++++|. +..++. . ..+++|+.|++++ +.++..|.
T Consensus 200 L~L~~N~----l~~~~~-l-------~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKNNQ----ISDVSP-L-------ANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp EECTTSC----CCBCGG-G-------TTCTTCCEEEEEE-EEEECCCE
T ss_pred EEccCCc----cCcccc-c-------cCCCCCCEEEccC-CeeecCCe
Confidence 8888877 555553 2 3678888888887 55666653
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1.2e-13 Score=141.64 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=152.8
Q ss_pred ccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCC
Q 038031 377 SLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLK 456 (729)
Q Consensus 377 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 456 (729)
...+++|++|++++| .++.++....+++|++|++++|. +..++. + ..+++|++|++++|. +..++.
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-------- 102 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-L--KNLTKITELELSGNP-LKNVSA-------- 102 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-G--TTCCSCCEEECCSCC-CSCCGG--------
T ss_pred HHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCc-CCCChh-H--ccCCCCCEEEccCCc-CCCchh--------
Confidence 456889999999995 78888866668999999999997 777766 2 888999999998853 332110
Q ss_pred eEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCc
Q 038031 457 QLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKG 536 (729)
Q Consensus 457 ~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~ 536 (729)
+ . .++ +|+.|+++++. ++ .++ .
T Consensus 103 ---------~----------~----~l~--~L~~L~l~~n~-l~-------------------------------~~~-~ 124 (308)
T 1h6u_A 103 ---------I----------A----GLQ--SIKTLDLTSTQ-IT-------------------------------DVT-P 124 (308)
T ss_dssp ---------G----------T----TCT--TCCEEECTTSC-CC-------------------------------CCG-G
T ss_pred ---------h----------c----CCC--CCCEEECCCCC-CC-------------------------------Cch-h
Confidence 0 0 344 78888887741 21 122 2
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
+..+++|++|++++|++..+++ ...+++|++|++++|.+.... .+..+++|++|++++|. +..++..
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~----l~~~~~l-- 191 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADDNK----ISDISPL-- 191 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC----CCCCGGG--
T ss_pred hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh------hhcCCCCCCEEECCCCc----cCcChhh--
Confidence 5778999999999999988876 556699999999999887632 36889999999999998 6666652
Q ss_pred ccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCC
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPE 668 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 668 (729)
..+++|+.|++++ +.++.++ .+..+++|++|++++| .++..|.
T Consensus 192 ------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 192 ------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp ------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred ------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 3689999999999 6788876 4899999999999995 5666554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=3.7e-13 Score=133.82 Aligned_cols=137 Identities=21% Similarity=0.245 Sum_probs=112.2
Q ss_pred CcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccc
Q 038031 535 KGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPL 613 (729)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~ 613 (729)
..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +..++.
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~----l~~~~~ 124 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQ----LKSLPS 124 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSC----CCCCCT
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCCc----CCCcCh
Confidence 45788999999999999998877 445677999999999998876543 367889999999999998 777776
Q ss_pred cccccCCccCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCchhH
Q 038031 614 EDKRLGTALPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPLIE 687 (729)
Q Consensus 614 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~l~ 687 (729)
.. +..+++|+.|++++ +.++.++. .+..+++|++|++++ +.++.++...+ +++|+.|++++|+.-.
T Consensus 125 ~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 125 GV------FDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred hH------hccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 43 24689999999999 68888874 688999999999999 57888876533 7899999999998643
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.5e-13 Score=138.61 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=62.3
Q ss_pred CcccEEEeeecCCcccccccc--cCCCCccEEEeccCCCcccC-CC-----CCCcCCcceEEEecCCCCCccccccccCC
Q 038031 357 CRLEYLGLLYCEGLVKLPQSS--LSLCSLREIEIYNCSSLVSF-PE-----VALPSKLKKIQIRHCDALKSLPEAWMCDT 428 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~--~~l~~L~~L~l~~c~~l~~l-~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 428 (729)
++|++|++++|...+..|..+ ..+++|++|++++| .++.. +. ...+++|++|++++|. +..++...+ ..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~-~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQV-RA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSC-CC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHh-cc
Confidence 679999999998777777766 88999999999985 55542 21 1237899999999988 555554443 78
Q ss_pred CCCccEEEeecCC
Q 038031 429 NSSLEILNIQYCC 441 (729)
Q Consensus 429 l~~L~~L~l~~c~ 441 (729)
+++|++|++++|.
T Consensus 168 l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 168 FPALTSLDLSDNP 180 (310)
T ss_dssp CTTCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 8899999998864
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=7.7e-13 Score=133.20 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccc
Q 038031 453 PSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEA 532 (729)
Q Consensus 453 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~ 532 (729)
++|+.|++.++. ++.+ +. +. .++ +|+.|+++++ .++. ++...-.++|++| .+.++ .+..
T Consensus 41 ~~L~~L~l~~~~-i~~~--~~--l~----~l~--~L~~L~l~~n-~l~~-~~~l~~l~~L~~L-------~L~~n-~l~~ 99 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSV--QG--IQ----YLP--NVRYLALGGN-KLHD-ISALKELTNLTYL-------ILTGN-QLQS 99 (272)
T ss_dssp TTCCEEECTTSC-CCCC--TT--GG----GCT--TCCEEECTTS-CCCC-CGGGTTCTTCCEE-------ECTTS-CCCC
T ss_pred cceeeeeeCCCC-cccc--cc--cc----cCC--CCcEEECCCC-CCCC-chhhcCCCCCCEE-------ECCCC-ccCc
Confidence 457888777654 4433 21 11 455 7888888774 2333 2221222345555 44433 2333
Q ss_pred ccCc-CCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc
Q 038031 533 LPKG-LHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS 610 (729)
Q Consensus 533 l~~~-~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~ 610 (729)
++.. +..+++|++|++++|++..+++ ..+.+++|++|++++|.+....+ ..+..+++|++|++++|. +..
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~----l~~ 171 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLSYNQ----LQS 171 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCC
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH----HHhccCccCCEEECCCCC----cCc
Confidence 3322 3455555555555555554442 23344555555555554443221 134455555555555554 333
Q ss_pred ccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCC
Q 038031 611 FPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 660 (729)
++... +..+++|+.|++++ +.++.++ ..+..+++|++|++++|
T Consensus 172 ~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 172 LPEGV------FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCHHH------hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCC
Confidence 33321 12345555555555 3344443 23445555555555554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=4.6e-13 Score=137.69 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=90.3
Q ss_pred CcCCCCCccceEEEccCCCCC---CC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccc
Q 038031 535 KGLHNLSCLQELTIIGGALPS---LE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMV 609 (729)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~i~~---l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 609 (729)
..+..+++|++|++++|++.. ++ ...+.+++|++|++++|.+...... ....+..+++|++|++++|. +.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N~----l~ 237 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHNS----LR 237 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTSC----CC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCCC----CC
Confidence 456677888888888886543 22 2234567888888888877532210 01123567888888888887 44
Q ss_pred cc-cccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCch
Q 038031 610 SF-PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 610 ~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~ 685 (729)
.+ |...+ .+..+++|++|++++ +.++.+|..+. ++|++|++++ |.++.+|....+++|+.|++++|+.
T Consensus 238 ~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 238 ATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCCC
Confidence 44 44332 111236888888888 66777776554 7888888888 4677766644567888888888864
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.9e-14 Score=148.71 Aligned_cols=243 Identities=16% Similarity=0.120 Sum_probs=122.1
Q ss_pred CcccEEEeeecCCcccccccccCC--CCccEEEeccCCCcccCCC-CCCcCCcceEEEecCCCCCc--cccccccCCCCC
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSL--CSLREIEIYNCSSLVSFPE-VALPSKLKKIQIRHCDALKS--LPEAWMCDTNSS 431 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l--~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~ 431 (729)
..++.++++++... +..+..+ ++++.|+++++ .+...+. ...+++|++|++++|. +.. ++... ..+++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~--~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL--SQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH--TTBCC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHH--hhCCC
Confidence 44667777665432 2334444 67777777763 4444332 2236677777777776 332 33332 66777
Q ss_pred ccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccc
Q 038031 432 LEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPAT 511 (729)
Q Consensus 432 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 511 (729)
|++|++++|. +.+... .. +. .++ +|+.|++++|..++.
T Consensus 120 L~~L~L~~~~-l~~~~~------------------------~~-l~----~~~--~L~~L~L~~~~~l~~---------- 157 (336)
T 2ast_B 120 LQNLSLEGLR-LSDPIV------------------------NT-LA----KNS--NLVRLNLSGCSGFSE---------- 157 (336)
T ss_dssp CSEEECTTCB-CCHHHH------------------------HH-HT----TCT--TCSEEECTTCBSCCH----------
T ss_pred CCEEeCcCcc-cCHHHH------------------------HH-Hh----cCC--CCCEEECCCCCCCCH----------
Confidence 7777777653 221110 00 00 122 455555554422221
Q ss_pred cccccccccccccccCcccccccCcCCCCCccceEEEccC-CCCC--CCCCCCCCC-CcceEEecCch--hhhhhhhhcc
Q 038031 512 LESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGG-ALPS--LEEEDGLPT-NLQSLDIRGNM--EICKSLIERG 585 (729)
Q Consensus 512 L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~-~i~~--l~~~~~~~~-~L~~L~L~~~~--~~~~~~~~~~ 585 (729)
..++..+..+++|++|++++| .+.. ++.....++ +|++|++++|. +..... .
T Consensus 158 -------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l---~ 215 (336)
T 2ast_B 158 -------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL---S 215 (336)
T ss_dssp -------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH---H
T ss_pred -------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH---H
Confidence 001112234455555555555 4442 222223334 66666666663 221111 1
Q ss_pred CCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCC
Q 038031 586 RGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLK 664 (729)
Q Consensus 586 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 664 (729)
..+..+++|++|++++|... ....+... ..+++|+.|++++|..+..-. ..+..+++|++|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l--~~~~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~---- 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVML--KNDCFQEF-------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI---- 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTC--CGGGGGGG-------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----
T ss_pred HHHhhCCCCCEEeCCCCCcC--CHHHHHHH-------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----
Confidence 13455677777777776621 12222222 245777777777765333211 24666778888888776
Q ss_pred CCCCCCC---CCccceeeccCCc
Q 038031 665 YFPEKGL---PSSLLQLWISGCP 684 (729)
Q Consensus 665 ~l~~~~~---~~~L~~L~l~~n~ 684 (729)
++..++ ..+++.|++++|.
T Consensus 283 -i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 283 -VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp -SCTTCHHHHHHHSTTSEESCCC
T ss_pred -cCHHHHHHHHhhCcceEEeccc
Confidence 444332 2457777776554
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=3.7e-12 Score=126.54 Aligned_cols=111 Identities=23% Similarity=0.283 Sum_probs=90.7
Q ss_pred cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.+..+++|++|++++|++..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +..++..
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~ 149 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQ----LQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCCCCTT
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCc----CCccCHH
Confidence 4677899999999999988887 455677999999999998875432 357889999999999998 7777763
Q ss_pred ccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
. +..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 150 ~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 A------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp T------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred H------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 2 24789999999999 6788877 578899999999999964
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.6e-12 Score=123.91 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=105.1
Q ss_pred cccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccc
Q 038031 530 LEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMV 609 (729)
Q Consensus 530 l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 609 (729)
+..+| ++..+++|++|++++|.+..++ ....+++|++|++++|.+....+ ..+..+++|++|++++|. +.
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~----i~ 125 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSA----HD 125 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSB----CB
T ss_pred ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCc----cC
Confidence 33444 5677889999999999776665 34456899999999998876544 367889999999999988 44
Q ss_pred c-ccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCc
Q 038031 610 S-FPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCP 684 (729)
Q Consensus 610 ~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~ 684 (729)
. .+... ..+++|++|++++|..++.++ .+..+++|++|++++| .++.++....+++|+.|++++|+
T Consensus 126 ~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 126 DSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred cHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 3 33333 368999999999966688886 6888999999999994 67777744447899999999987
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=5.5e-14 Score=148.04 Aligned_cols=114 Identities=17% Similarity=0.072 Sum_probs=57.3
Q ss_pred ccceEEEccCCCCCCCC-----CCCCC-CCcceEEecCchhhhhhhhhccCCCCC-CCCcceeeeccCCCcccccccccc
Q 038031 542 CLQELTIIGGALPSLEE-----EDGLP-TNLQSLDIRGNMEICKSLIERGRGFHR-FSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~-----~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~l~~-l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
+|++|++++|++..... ....+ ++|++|++++|.+...........+.. .++|++|++++|. +...+..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~ 243 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC----LHGPSLE 243 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC----CCCCCHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC----CCcHHHH
Confidence 66666666665554431 11122 466777777666654211100112223 2467777777766 3333221
Q ss_pred ccccCCccCCCCCcceEEcccCC-------CcccccccCCCCCCccEEeecCCC
Q 038031 615 DKRLGTALPLPASLTSLSISRFP-------NLERLSSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~ 661 (729)
. ....+..+++|+.|++++|. .+..++..+..+++|+.|++++|+
T Consensus 244 ~--l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 N--LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp H--HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred H--HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0 00112345667777777642 133334456667777777777753
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=1e-13 Score=147.55 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=82.9
Q ss_pred cCCCCCccceEEEccCCCCC------CCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc-c
Q 038031 536 GLHNLSCLQELTIIGGALPS------LEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV-M 608 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~------l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~-~ 608 (729)
.+..+++|++|++++|++.. ++.....+++|++|+|++|.+...........+..+++|++|++++|..... .
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 34567899999999997772 1225566789999999999886321110022567889999999999983211 0
Q ss_pred ccccccccccCCccCCCCCcceEEcccCCCccc-----ccccC-CCCCCccEEeecCCCCCCCC
Q 038031 609 VSFPLEDKRLGTALPLPASLTSLSISRFPNLER-----LSSSI-VDLQNLTELHLWDCPKLKYF 666 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~l 666 (729)
..++.... ...+++|+.|++++ +.++. +|..+ .++++|++|++++|+ ++..
T Consensus 262 ~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~ 318 (386)
T 2ca6_A 262 AAVVDAFS-----KLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEE 318 (386)
T ss_dssp HHHHHHHH-----TCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTT
T ss_pred HHHHHHHh-----hccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcc
Confidence 01233220 01378999999999 45665 77666 668999999999964 4433
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=4.2e-12 Score=124.09 Aligned_cols=141 Identities=24% Similarity=0.268 Sum_probs=111.5
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
.++..+|..+. ++|++|++++|.+..+. ..+..+++|++|++++|.+.... ...+..+++|++|++++|.
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~--- 99 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQ--- 99 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC---
T ss_pred CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCc---
Confidence 35566665543 78999999999888875 55666789999999999875443 2357889999999999998
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCc
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCP 684 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~ 684 (729)
+..++... +..+++|+.|++++ +.++.+|..+..+++|++|++++ |.++.++...+ +++|+.|++++||
T Consensus 100 -l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 -LTVLPSAV------FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp -CCCCCTTT------TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred -CCccChhH------hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77776543 24689999999999 77889998889999999999999 57888886533 7899999999998
Q ss_pred hh
Q 038031 685 LI 686 (729)
Q Consensus 685 ~l 686 (729)
..
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 53
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=2e-12 Score=131.39 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=61.9
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
+..+++|++|++++|.+..++. ...+++|++|++++|.+... ..+..+++|++|++++|. +..++. .
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~----l~~~~~-l- 152 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNK----ITDITV-L- 152 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSC----CCCCGG-G-
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCc----CCcchh-h-
Confidence 4455555555555555554443 33345555555555554432 123445555555555555 333321 1
Q ss_pred ccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCc
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCP 684 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~ 684 (729)
..+++|+.|++++ +.++.++. +..+++|++|++++| .++.++....+++|+.|++++|+
T Consensus 153 ------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 153 ------SRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------GGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ------ccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 2345555555555 34444433 555555555555552 44444433334555555555554
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4.9e-12 Score=122.73 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=110.5
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
.+++.+|..+. ++|++|++++|+|..+++ .+..+++|++|++++|.+....+ ..|.++++|++|++++|.
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~Ls~N~--- 91 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNK--- 91 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT----TTTTTCSSCCEEECCSSC---
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH----HHhhCCcCCCEEECCCCc---
Confidence 34566665543 688999999998888873 56667899999999998876543 367889999999999998
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCC
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGC 683 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n 683 (729)
+..+|... +..+++|+.|++++ +.++.++ ..+..+++|++|++++ +.++.++...+ +++|+.|++++|
T Consensus 92 -l~~l~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 -ITELPKSL------FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp -CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CCccCHhH------ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 77777643 24689999999999 6777775 6788999999999999 57888876533 688999999999
Q ss_pred ch
Q 038031 684 PL 685 (729)
Q Consensus 684 ~~ 685 (729)
|.
T Consensus 163 ~~ 164 (220)
T 2v9t_B 163 PF 164 (220)
T ss_dssp CE
T ss_pred Cc
Confidence 75
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=6.5e-14 Score=146.04 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=144.2
Q ss_pred CccEEEeccCCCcccCCCCCCc--CCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEE
Q 038031 382 SLREIEIYNCSSLVSFPEVALP--SKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLT 459 (729)
Q Consensus 382 ~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 459 (729)
.++.++++++ .+..- ....+ ++++.|+++++. +...+... ..+++|++|++++|. +....
T Consensus 48 ~~~~l~l~~~-~~~~~-~~~~~~~~~l~~L~l~~n~-l~~~~~~~--~~~~~L~~L~L~~~~-l~~~~------------ 109 (336)
T 2ast_B 48 LWQTLDLTGK-NLHPD-VTGRLLSQGVIAFRCPRSF-MDQPLAEH--FSPFRVQHMDLSNSV-IEVST------------ 109 (336)
T ss_dssp TSSEEECTTC-BCCHH-HHHHHHHTTCSEEECTTCE-ECSCCCSC--CCCBCCCEEECTTCE-ECHHH------------
T ss_pred hheeeccccc-cCCHH-HHHhhhhccceEEEcCCcc-ccccchhh--ccCCCCCEEEccCCC-cCHHH------------
Confidence 4778888873 33310 01112 678888888776 33333332 456777777777652 21100
Q ss_pred EecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCC
Q 038031 460 IWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHN 539 (729)
Q Consensus 460 l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~ 539 (729)
+ +.. +. .++ +|+.|++++|. +.. ..+..+..
T Consensus 110 ---------~--~~~-~~----~~~--~L~~L~L~~~~-l~~------------------------------~~~~~l~~ 140 (336)
T 2ast_B 110 ---------L--HGI-LS----QCS--KLQNLSLEGLR-LSD------------------------------PIVNTLAK 140 (336)
T ss_dssp ---------H--HHH-HT----TBC--CCSEEECTTCB-CCH------------------------------HHHHHHTT
T ss_pred ---------H--HHH-Hh----hCC--CCCEEeCcCcc-cCH------------------------------HHHHHHhc
Confidence 0 111 11 345 88888888752 221 12234466
Q ss_pred CCccceEEEccC-CCCC--CCCCCCCCCCcceEEecCc-hhhhhhhhhccCCCCCCC-CcceeeeccCCCcccccccccc
Q 038031 540 LSCLQELTIIGG-ALPS--LEEEDGLPTNLQSLDIRGN-MEICKSLIERGRGFHRFS-SLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 540 l~~L~~L~l~~~-~i~~--l~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~-~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
+++|++|++++| .++. ++.....+++|++|++++| .+..... ...+..++ +|++|++++|.....-..++..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV---QVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH---HHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH---HHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 899999999999 5553 3344556799999999999 7665422 22467889 9999999998511001445554
Q ss_pred ccccCCccCCCCCcceEEcccCCCcc-cccccCCCCCCccEEeecCCCCCCCCCC--CCCCCccceeeccCC
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLE-RLSSSIVDLQNLTELHLWDCPKLKYFPE--KGLPSSLLQLWISGC 683 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~n 683 (729)
. ..+++|+.|++++|..++ ..+..+..+++|++|++++|..+..... -+.+++|+.|++++|
T Consensus 218 ~-------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 218 V-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp H-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred H-------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3 257999999999977565 4557788999999999999873332211 123789999999999
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=7.7e-12 Score=137.96 Aligned_cols=71 Identities=31% Similarity=0.443 Sum_probs=49.9
Q ss_pred CccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCCCCCeEEEe
Q 038031 382 SLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPPSLKQLTIW 461 (729)
Q Consensus 382 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~ 461 (729)
+|+.|++++ +.++.+|... +++|++|++++|. ++.+| . .+++|++|++++| .+..++. ++.+|+.|+++
T Consensus 60 ~L~~L~Ls~-n~L~~lp~~l-~~~L~~L~Ls~N~-l~~ip-~----~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSLPDNL-PPQITVLEITQNA-LISLP-E----LPASLEYLDACDN-RLSTLPE--LPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCS-SCCSCCCSCC-CTTCSEEECCSSC-CSCCC-C----CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECC
T ss_pred CccEEEeCC-CCCCccCHhH-cCCCCEEECcCCC-Ccccc-c----ccCCCCEEEccCC-CCCCcch--hhcCCCEEECC
Confidence 899999998 4688887533 4789999999887 66777 2 3578888888874 4544444 33356666655
Q ss_pred cC
Q 038031 462 RC 463 (729)
Q Consensus 462 ~~ 463 (729)
++
T Consensus 129 ~N 130 (571)
T 3cvr_A 129 NN 130 (571)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1e-11 Score=136.90 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=95.4
Q ss_pred CccEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcc
Q 038031 431 SLEILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPA 510 (729)
Q Consensus 431 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~ 510 (729)
+++.|+++++ .+..++.. ++++|+.|+++++. ++.+ | . .++ +|+.|+++++ .++. +|. ++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-l~~~L~~L~Ls~N~-l~~i--p-~-------~l~--~L~~L~Ls~N-~l~~-ip~--l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-LPPQITVLEITQNA-LISL--P-E-------LPA--SLEYLDACDN-RLST-LPE--LPA 120 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-CCTTCSEEECCSSC-CSCC--C-C-------CCT--TCCEEECCSS-CCSC-CCC--CCT
T ss_pred CccEEEeCCC-CCCccCHh-HcCCCCEEECcCCC-Cccc--c-c-------ccC--CCCEEEccCC-CCCC-cch--hhc
Confidence 7889999885 56665543 34678888888764 6655 5 2 234 8888888874 4444 443 333
Q ss_pred ccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCC
Q 038031 511 TLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHR 590 (729)
Q Consensus 511 ~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 590 (729)
+|++| .+.++ .+..+|. .+++|+.|++++|.+..++. .+++|++|++++|.+.. ++ . +.
T Consensus 121 ~L~~L-------~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp----~-l~- 179 (571)
T 3cvr_A 121 SLKHL-------DVDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LP----E-LP- 179 (571)
T ss_dssp TCCEE-------ECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC----C-CC-
T ss_pred CCCEE-------ECCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cc----h-hh-
Confidence 55555 44432 3344444 34555555555555555443 33555555555555443 11 1 22
Q ss_pred CCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCC
Q 038031 591 FSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDC 660 (729)
Q Consensus 591 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 660 (729)
++|+.|++++|. +..+|. ... ......+.|+.|++++ +.++.+|..+..+++|++|++++|
T Consensus 180 -~~L~~L~Ls~N~----L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 180 -ESLEALDVSTNL----LESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp -TTCCEEECCSSC----CSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred -CCCCEEECcCCC----CCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 555555555555 444444 210 0000111125555555 445555554555555555555554
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=1.1e-12 Score=138.06 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=68.0
Q ss_pred hhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccC-cccEEEeeecCCcccccccccCC-----CCccEEEeccCC
Q 038031 319 LLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSC-RLEYLGLLYCEGLVKLPQSSLSL-----CSLREIEIYNCS 392 (729)
Q Consensus 319 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~l~~~~~~~~~l-----~~L~~L~l~~c~ 392 (729)
+....++|+.|++++|. ++..........+..+ + +|++|++++|......+..+..+ ++|++|++++|
T Consensus 17 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHhCCCCceEEEccCCC-CChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 44455568888888776 6665554333334333 5 78888888886444334334332 78888888874
Q ss_pred CcccCCCC------CCc-CCcceEEEecCCCCCcccccccc---CC-CCCccEEEeecC
Q 038031 393 SLVSFPEV------ALP-SKLKKIQIRHCDALKSLPEAWMC---DT-NSSLEILNIQYC 440 (729)
Q Consensus 393 ~l~~l~~~------~~~-~~L~~L~l~~~~~l~~~~~~~~~---~~-l~~L~~L~l~~c 440 (729)
.++..... ... ++|++|++++|. ++..+...+. .. .++|++|++++|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 46544321 112 678888888877 5554432210 23 257888888775
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=2.4e-13 Score=144.63 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=59.3
Q ss_pred cCCCCCccceEEEccCCCC-----CCCCCCCCCCCcceEEecCchhhhhhhhhccCCC--CCCCCcceeeeccCCCcccc
Q 038031 536 GLHNLSCLQELTIIGGALP-----SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGF--HRFSSLRHLTIGGCDDDTVM 608 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l--~~l~~L~~L~ls~n~~~~~~ 608 (729)
.+..+++|++|++++|.+. .++.....+++|++|+|++|.+...........+ ..+++|++|++++|. +
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~----i 286 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE----I 286 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC----C
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc----C
Confidence 4566778888888888662 3334445567888888888877654221001233 347888888888888 4
Q ss_pred cc-----ccccccccCCccCCCCCcceEEcccCC
Q 038031 609 VS-----FPLEDKRLGTALPLPASLTSLSISRFP 637 (729)
Q Consensus 609 ~~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~ 637 (729)
.. +|.... ..+++|+.|++++|+
T Consensus 287 ~~~g~~~l~~~l~------~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 287 ELDAVRTLKTVID------EKMPDLLFLELNGNR 314 (386)
T ss_dssp BHHHHHHHHHHHH------HHCTTCCEEECTTSB
T ss_pred CHHHHHHHHHHHH------hcCCCceEEEccCCc
Confidence 44 555431 246888999998843
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.9e-11 Score=122.72 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred CCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEEeec
Q 038031 379 SLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQY 439 (729)
Q Consensus 379 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 439 (729)
.+++|+.|++++| .++.++....+++|++|++++|. +..++. + ..+++|++|++++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-l--~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNK-LTDIKP-L--ANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEECCS
T ss_pred hcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCc-cCCCcc-c--ccCCCCCEEECCC
Confidence 4455555555552 45555444445555666665554 444443 1 5555666666655
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=4.2e-11 Score=116.92 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=95.9
Q ss_pred cCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccc
Q 038031 534 PKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFP 612 (729)
Q Consensus 534 ~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~ 612 (729)
|..+..+++|++|++++|++..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +..+|
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~----l~~lp 128 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNK----LTELP 128 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCSCC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCc----ccccC
Confidence 556788999999999999999888 445677999999999998876533 357899999999999999 77888
Q ss_pred ccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 613 LEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 613 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
... ..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 129 ~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 129 RGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 766 3789999999999 7888888 568899999999999964
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=1.6e-11 Score=137.00 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=101.7
Q ss_pred CCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccccc
Q 038031 453 PSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEA 532 (729)
Q Consensus 453 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~ 532 (729)
..|+.|++.++. +..+ +. +. .++ +|+.|++++| .+.. ++...-.++|+.| .+.++ .+..
T Consensus 43 ~~L~~L~l~~n~-i~~l--~~--l~----~l~--~L~~L~Ls~N-~l~~-~~~l~~l~~L~~L-------~Ls~N-~l~~ 101 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSV--QG--IQ----YLP--NVTKLFLNGN-KLTD-IKPLTNLKNLGWL-------FLDEN-KIKD 101 (605)
T ss_dssp TTCCCCBCTTCC-CCCC--TT--GG----GCT--TCCEEECTTS-CCCC-CGGGGGCTTCCEE-------ECCSS-CCCC
T ss_pred CCCCEEECcCCC-CCCC--hH--Hc----cCC--CCCEEEeeCC-CCCC-ChhhccCCCCCEE-------ECcCC-CCCC
Confidence 457777777654 4444 21 22 566 8888888874 3444 3222222456666 55543 3444
Q ss_pred ccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccc
Q 038031 533 LPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFP 612 (729)
Q Consensus 533 l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~ 612 (729)
+| .+..+++|+.|++++|.+..++. ...+++|+.|+|++|.+... ..+..+++|+.|+|++|. +..++
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~----l~~~~ 169 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQ----ISDIV 169 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSC----CCCCG
T ss_pred Ch-hhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCc----CCCch
Confidence 43 46667777777777776666543 33446777777777766543 145667777777777776 44443
Q ss_pred ccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCC
Q 038031 613 LEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 613 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
. . ..+++|+.|+|++ +.++.++ .+..+++|+.|++++| .+...|
T Consensus 170 ~-l-------~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 170 P-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp G-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCC
T ss_pred h-h-------ccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCc
Confidence 3 2 3567777777777 4566663 4666777777777774 344443
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=5.7e-11 Score=114.21 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=88.0
Q ss_pred ccccccccccccccccccCcccccccCc-CCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccC
Q 038031 509 PATLESLEVGNLPPSLKSLSRLEALPKG-LHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGR 586 (729)
Q Consensus 509 ~~~L~~L~~~~~~~~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 586 (729)
++++++| ++.++ ++..++.. +..+++|++|++++|++..++. ....+++|++|++++|.+....+ .
T Consensus 27 ~~~l~~L-------~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~ 94 (208)
T 2o6s_A 27 PAQTTYL-------DLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN----G 94 (208)
T ss_dssp CTTCSEE-------ECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----T
T ss_pred CCCCcEE-------EcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH----h
Confidence 3566777 55553 34444433 5667777777777777666653 33455777777777776654322 2
Q ss_pred CCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCCCCCC
Q 038031 587 GFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCPKLKY 665 (729)
Q Consensus 587 ~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 665 (729)
.+..+++|++|++++|. +..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus 95 ~~~~l~~L~~L~L~~N~----l~~~~~~~------~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ----LQSLPDGV------FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp TTTTCTTCCEEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred HhcCccCCCEEEcCCCc----CcccCHhH------hccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee--
Confidence 45667777777777766 55555432 23567777777777 45666653 3566777777777775321
Q ss_pred CCCCCCCCccceeeccCCch
Q 038031 666 FPEKGLPSSLLQLWISGCPL 685 (729)
Q Consensus 666 l~~~~~~~~L~~L~l~~n~~ 685 (729)
+.+++|+.|+++.|..
T Consensus 162 ----~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKH 177 (208)
T ss_dssp ----CCTTTTHHHHHHHHHC
T ss_pred ----cCCCCHHHHHHHHHhC
Confidence 2244566666665543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=4.2e-11 Score=116.05 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=93.5
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCC--CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLE--EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
.++.+|..+ .+.+++|++++|++..++ ..+..+++|++|++++|.+....+ ..|..+++|++|++++|.
T Consensus 22 ~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~----~~~~~l~~L~~L~Ls~N~--- 92 (220)
T 2v70_A 22 KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE----GAFEGASGVNEILLTSNR--- 92 (220)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSC---
T ss_pred CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH----HHhCCCCCCCEEECCCCc---
Confidence 344455433 234577888888777664 234556788888888877665432 356778888888888877
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCcccc-cccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCC
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERL-SSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGC 683 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n 683 (729)
+..++... +..+++|++|++++ +.++.+ |..+..+++|++|++++ +.++.++...+ +++|+.|++++|
T Consensus 93 -l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 -LENVQHKM------FKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp -CCCCCGGG------GTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred -cCccCHhH------hcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence 66665532 24678888888888 556666 46777888888888888 46666644333 677888888888
Q ss_pred ch
Q 038031 684 PL 685 (729)
Q Consensus 684 ~~ 685 (729)
+.
T Consensus 164 ~l 165 (220)
T 2v70_A 164 PF 165 (220)
T ss_dssp CE
T ss_pred CC
Confidence 64
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=2.9e-11 Score=126.98 Aligned_cols=141 Identities=25% Similarity=0.231 Sum_probs=106.0
Q ss_pred ccccccCc-CC-CCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCc
Q 038031 529 RLEALPKG-LH-NLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDD 605 (729)
Q Consensus 529 ~l~~l~~~-~~-~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~ 605 (729)
++..++.. +. .+++|++|++++|+|..++ ..+..+++|++|+|++|.+....+ ..|..+++|++|++++|.
T Consensus 50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~-- 123 (361)
T 2xot_A 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNH-- 123 (361)
T ss_dssp CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSC--
T ss_pred CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCCc--
Confidence 33444333 44 7899999999999998887 456677999999999998775432 367889999999999998
Q ss_pred cccccccccccccCCccCCCCCcceEEcccCCCccccccc-C---CCCCCccEEeecCCCCCCCCCCCCC--CCc--cce
Q 038031 606 TVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSS-I---VDLQNLTELHLWDCPKLKYFPEKGL--PSS--LLQ 677 (729)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~---~~l~~L~~L~l~~c~~l~~l~~~~~--~~~--L~~ 677 (729)
+..++.. ++..+++|+.|++++ +.++.+|.. + ..+++|++|++++ |.++.++...+ ++. ++.
T Consensus 124 --i~~~~~~------~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 124 --IVVVDRN------AFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp --CCEECTT------TTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTT
T ss_pred --ccEECHH------HhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcce
Confidence 6666432 235789999999999 788888844 3 5789999999999 57888875422 444 588
Q ss_pred eeccCCch
Q 038031 678 LWISGCPL 685 (729)
Q Consensus 678 L~l~~n~~ 685 (729)
|++.+||.
T Consensus 194 l~l~~N~~ 201 (361)
T 2xot_A 194 LYLHNNPL 201 (361)
T ss_dssp EECCSSCE
T ss_pred EEecCCCc
Confidence 99999874
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=6.2e-11 Score=113.96 Aligned_cols=139 Identities=23% Similarity=0.328 Sum_probs=94.9
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
.+..+|..+ .++|++|++++|++..++. ....+++|++|++++|.+.... ...+..+++|++|++++|.
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~---- 87 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQ---- 87 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC----
T ss_pred CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCc----
Confidence 344555433 4578888888887777763 3456678888888888776432 2346778888888888877
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCc
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCP 684 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~ 684 (729)
+..++... +..+++|++|++++ +.++.++ ..+..+++|++|++++ +.++.++...+ +++|+.|++++|+
T Consensus 88 l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 LQSLPNGV------FDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHhH------hcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCC
Confidence 66665432 24677888888887 5677776 3467788888888888 46666666432 6778888888875
Q ss_pred h
Q 038031 685 L 685 (729)
Q Consensus 685 ~ 685 (729)
.
T Consensus 160 ~ 160 (208)
T 2o6s_A 160 W 160 (208)
T ss_dssp B
T ss_pred e
Confidence 3
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=4.7e-11 Score=119.22 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=90.0
Q ss_pred cccccccceEEecCCCCccccccCCCCccccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCC
Q 038031 482 RYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDG 561 (729)
Q Consensus 482 ~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~ 561 (729)
.++ +|+.|+++++ .++. ++.....++|++| +++++ .+..++. +..+++|++|++++|++..++....
T Consensus 39 ~l~--~L~~L~l~~n-~i~~-l~~l~~l~~L~~L-------~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 39 ELS--GVQNFNGDNS-NIQS-LAGMQFFTNLKEL-------HLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp HHT--TCSEEECTTS-CCCC-CTTGGGCTTCCEE-------ECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred hcC--cCcEEECcCC-Cccc-chHHhhCCCCCEE-------ECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc
Confidence 455 7888888875 4544 4422223556666 55543 4555544 6667777777777776666654333
Q ss_pred CCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccc
Q 038031 562 LPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLER 641 (729)
Q Consensus 562 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 641 (729)
++|++|++++|.+... ..+..+++|++|++++|. +..++. . ..+++|+.|++++ +.++.
T Consensus 106 --~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~----i~~~~~-l-------~~l~~L~~L~L~~-N~i~~ 164 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNK----LKSIVM-L-------GFLSKLEVLDLHG-NEITN 164 (263)
T ss_dssp --SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSC----CCBCGG-G-------GGCTTCCEEECTT-SCCCB
T ss_pred --CcccEEEccCCccCCC------hhhcCcccccEEECCCCc----CCCChH-H-------ccCCCCCEEECCC-CcCcc
Confidence 6777777777766542 135666777777777766 555542 1 2466777777777 45555
Q ss_pred ccccCCCCCCccEEeecCCCCCCCCC
Q 038031 642 LSSSIVDLQNLTELHLWDCPKLKYFP 667 (729)
Q Consensus 642 l~~~~~~l~~L~~L~l~~c~~l~~l~ 667 (729)
+ ..+..+++|++|++++| .+...|
T Consensus 165 ~-~~l~~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEE-EEECCC
T ss_pred h-HHhccCCCCCEEeCCCC-cccCCc
Confidence 5 55666777777777764 344333
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=6.1e-11 Score=122.86 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=63.3
Q ss_pred cCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCC
Q 038031 322 DICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVA 401 (729)
Q Consensus 322 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 401 (729)
.+++++.|.+++. +.. . .+..+....++|++|+|++|... ......+.++.+..+.+.. + .++...
T Consensus 23 ~~~~l~~L~l~g~--i~~---~----~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~-~---~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK--LNA---E----DFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMA-N---FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE--ECH---H----HHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECT-T---EECTTT
T ss_pred hhCceeEEEEecc--ccH---H----HHHHHHHhhccCeEEecCcceeE-EecCccccccccccccccc-c---ccCHHH
Confidence 4567888888753 111 1 12222222488999999998743 1111112233334444443 2 344333
Q ss_pred C----------cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCCC
Q 038031 402 L----------PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLPP 453 (729)
Q Consensus 402 ~----------~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 453 (729)
| +++|++|++.+ .++.++...| .++++|+.+++.+ +.+..++..++..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~ 146 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALAD 146 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcC
Confidence 2 57788888876 3777776666 7788888888876 4455555554443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=5.4e-11 Score=113.24 Aligned_cols=151 Identities=17% Similarity=0.071 Sum_probs=118.0
Q ss_pred CCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc-cccccc
Q 038031 538 HNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS-FPLEDK 616 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~~~~ 616 (729)
..+++|++|++++|.+..++ ....+++|++|++++|.+... ..+..+++|++|++++|. +.. .+...
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~----l~~~~~~~l- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKD----VTSDKIPNL- 108 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTT----CBGGGSCCC-
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCc----cCcccChhh-
Confidence 56789999999999999888 466679999999999965432 256889999999999998 443 34333
Q ss_pred ccCCccCCCCCcceEEcccCCCcc-cccccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccCCchhHHhhhccCC
Q 038031 617 RLGTALPLPASLTSLSISRFPNLE-RLSSSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISGCPLIEEKCRKDGG 695 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~l~~~~~~~~~ 695 (729)
..+++|++|++++| .++ ..+..+..+++|++|++++|+.++.++....+++|+.|++++|.. ++ -
T Consensus 109 ------~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i-~~------~ 174 (197)
T 4ezg_A 109 ------SGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV-HD------Y 174 (197)
T ss_dssp ------TTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCC-CC------C
T ss_pred ------cCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCC-cC------h
Confidence 47899999999995 555 466788999999999999976688888545588999999999964 21 1
Q ss_pred CCcccccccceEEeCCeEE
Q 038031 696 QYWDLLTHIPCVKIDWERL 714 (729)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~ 714 (729)
..+..+.+++.+.+.+..+
T Consensus 175 ~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTGGGCSSCCEEEECBC--
T ss_pred HHhccCCCCCEEEeeCccc
Confidence 1456677888888877654
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=112.56 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=89.5
Q ss_pred CCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
+..+++|++|++++|+|..+++ .+..+++|++|++++|.+....+ ..+..+++|++|++++|. +..++..
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~- 123 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNR----ITCVGND- 123 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSC----CCCBCTT-
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCc----CCeECHh-
Confidence 5788899999999998888873 56677999999999998876543 357889999999999998 6666432
Q ss_pred cccCCccCCCCCcceEEcccCCCcccc-cccCCCCCCccEEeecCCC
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERL-SSSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 661 (729)
.+..+++|+.|++++ +.++.+ |..+..+++|++|++++|+
T Consensus 124 -----~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 124 -----SFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -----SSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred -----HcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 224789999999999 677777 5788999999999999964
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=9.2e-11 Score=130.90 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=45.6
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccccccccCCCCCccEEE
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILN 436 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 436 (729)
++|++|++++|. +..++ .+..+++|+.|+|++ +.+..++....+++|+.|++++|. +..++.. ..+++|+.|+
T Consensus 43 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l---~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNG-NKLTDIKPLTNLKNLGWLFLDENK-IKDLSSL---KDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTT-SCCCCCGGGGGCTTCCEEECCSSC-CCCCTTS---TTCTTCCEEE
T ss_pred CCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeC-CCCCCChhhccCCCCCEEECcCCC-CCCChhh---ccCCCCCEEE
Confidence 666666666665 33343 356666777777766 345555544446666666666665 5544432 5566666666
Q ss_pred eecC
Q 038031 437 IQYC 440 (729)
Q Consensus 437 l~~c 440 (729)
+++|
T Consensus 116 Ls~N 119 (605)
T 1m9s_A 116 LEHN 119 (605)
T ss_dssp CTTS
T ss_pred ecCC
Confidence 6654
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.9e-11 Score=110.33 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=56.4
Q ss_pred cccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccc
Q 038031 532 ALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSF 611 (729)
Q Consensus 532 ~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 611 (729)
.+|..+..+++|++|++++|.+..+ .....+++|++|++++|.+....+ ..+..+++|++|++++|. +..+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~ 110 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD----MLAEKLPNLTHLNLSGNK----LKDI 110 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCC----HHHHHCTTCCEEECBSSS----CCSS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHH----HHHhhCCCCCEEeccCCc----cCcc
Confidence 3444445556666666666655555 334444556666666555544221 123345555555555555 4444
Q ss_pred c--ccccccCCccCCCCCcceEEcccCCCcccccc----cCCCCCCccEEeecCC
Q 038031 612 P--LEDKRLGTALPLPASLTSLSISRFPNLERLSS----SIVDLQNLTELHLWDC 660 (729)
Q Consensus 612 ~--~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~c 660 (729)
| ... ..+++|+.|++++ +.++.+|. .+..+++|++|++++|
T Consensus 111 ~~~~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 111 STLEPL-------KKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GGGGGG-------SSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hhHHHH-------hcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 3 111 2445555555555 34444443 4455555555555553
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=1.8e-10 Score=111.58 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=95.1
Q ss_pred ccccccC-cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 529 RLEALPK-GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 529 ~l~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
.+..++. .+..+++|++|++++|++..+. ..+..+++|++|+|++|.+.... ...|..+++|++|++++|.
T Consensus 43 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N~--- 115 (220)
T 2v9t_B 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP----KSLFEGLFSLQLLLLNANK--- 115 (220)
T ss_dssp CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC---
T ss_pred cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC----HhHccCCCCCCEEECCCCC---
Confidence 3444443 5788999999999999998875 56667799999999999887543 3467889999999999998
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
+..++.. .+..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 116 -l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 116 -INCLRVD------AFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -CCCCCTT------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCEeCHH------HcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6666542 235789999999999 7788887 568889999999999964
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=4.6e-11 Score=111.46 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=109.9
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 616 (729)
+..+++|++|++++|++..++......++|++|++++|.+... ..+..+++|++|++++|. +..+|...
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~----l~~~~~~~- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNR----ICRIGEGL- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSC----CCEECSCH-
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCc----ccccCcch-
Confidence 4567899999999999998876555556999999999988764 267889999999999998 77777543
Q ss_pred ccCCccCCCCCcceEEcccCCCcccccc--cCCCCCCccEEeecCCCCCCCCCCC-----CCCCccceeeccCCchhHH
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLSS--SIVDLQNLTELHLWDCPKLKYFPEK-----GLPSSLLQLWISGCPLIEE 688 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~n~~l~~ 688 (729)
+..+++|+.|++++ +.++.+|. .+..+++|++|++++| .++.+|.. ..+++|+.|++++|+.-..
T Consensus 84 -----~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 84 -----DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp -----HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred -----hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 13689999999999 67888886 7889999999999995 56777762 2378999999999986444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.7e-10 Score=115.09 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=99.0
Q ss_pred cccccccccccccccccCcccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCC
Q 038031 510 ATLESLEVGNLPPSLKSLSRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFH 589 (729)
Q Consensus 510 ~~L~~L~~~~~~~~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~ 589 (729)
++|++| .+.++ ++..++ .+..+++|++|++++|++..+++ ...+++|++|++++|.+..... +.
T Consensus 41 ~~L~~L-------~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~------~~ 104 (263)
T 1xeu_A 41 SGVQNF-------NGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG------IP 104 (263)
T ss_dssp TTCSEE-------ECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT------CC
T ss_pred CcCcEE-------ECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc------cc
Confidence 456677 55554 556665 56777888888888887777776 5566788888888887765321 22
Q ss_pred CCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC
Q 038031 590 RFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK 669 (729)
Q Consensus 590 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 669 (729)
. ++|++|++++|. +..++. . ..+++|+.|++++ +.++.++ .+..+++|++|++++ +.++.++..
T Consensus 105 ~-~~L~~L~L~~N~----l~~~~~-l-------~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~l 168 (263)
T 1xeu_A 105 S-ACLSRLFLDNNE----LRDTDS-L-------IHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHG-NEITNTGGL 168 (263)
T ss_dssp C-SSCCEEECCSSC----CSBSGG-G-------TTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTT-SCCCBCTTS
T ss_pred c-CcccEEEccCCc----cCCChh-h-------cCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCC-CcCcchHHh
Confidence 2 778888888877 555543 2 3577888888888 5677775 577778888888887 456666433
Q ss_pred CCCCccceeeccCCch
Q 038031 670 GLPSSLLQLWISGCPL 685 (729)
Q Consensus 670 ~~~~~L~~L~l~~n~~ 685 (729)
..+++|+.|++++|+.
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 4467788888887764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=8.4e-11 Score=108.75 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=106.8
Q ss_pred CCCccceEEEccCCCC--CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc-ccccc
Q 038031 539 NLSCLQELTIIGGALP--SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS-FPLED 615 (729)
Q Consensus 539 ~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~~~ 615 (729)
..++|++|++++|.+. .++.....+++|++|++++|.+... ..+..+++|++|++++|. +.. +|...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~----l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENR----IFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCC----CCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCc----CchHHHHHH
Confidence 4588999999999988 7777667789999999999987764 367889999999999999 555 55544
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCCCCCCCCC----C-CCCCccceeeccCCch
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCPKLKYFPE----K-GLPSSLLQLWISGCPL 685 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~----~-~~~~~L~~L~l~~n~~ 685 (729)
..+++|+.|++++ +.++.++ ..+..+++|++|++++| .++.++. . ..+++|+.|++++|+.
T Consensus 92 -------~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 -------EKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp -------HHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred -------hhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 2589999999999 5788876 78899999999999995 6777776 2 3478999999999975
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=1.8e-10 Score=120.96 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=119.0
Q ss_pred cEEEeecCCCcccccccCCCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCcccc
Q 038031 433 EILNIQYCCSLRYIVEVQLPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATL 512 (729)
Q Consensus 433 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 512 (729)
+.+++++ ..++.+|. .++..++.|+++++. ++.+ +...+.. .++ +|+.|+++++
T Consensus 21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~-l~~l--~~~~~~~---~l~--~L~~L~L~~N---------------- 74 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNN-LSRL--RAEWTPT---RLT--NLHSLLLSHN---------------- 74 (361)
T ss_dssp TEEECCS-SCCSSCCS-SCCTTCSEEECCSSC-CCEE--CTTSSSS---CCT--TCCEEECCSS----------------
T ss_pred CEEEeCC-CCcCccCc-cCCCCCCEEECCCCC-CCcc--Chhhhhh---ccc--ccCEEECCCC----------------
Confidence 4566655 45555554 345567777777653 5555 3333210 344 6666666652
Q ss_pred ccccccccccccccCccccccc-CcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCC
Q 038031 513 ESLEVGNLPPSLKSLSRLEALP-KGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHR 590 (729)
Q Consensus 513 ~~L~~~~~~~~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 590 (729)
++..++ ..+..+++|++|++++|++..++ ..+..+++|++|+|++|.+....+ ..|..
T Consensus 75 ----------------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~ 134 (361)
T 2xot_A 75 ----------------HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----NAFED 134 (361)
T ss_dssp ----------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTT
T ss_pred ----------------cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH----HHhCC
Confidence 233333 34678899999999999888887 345667999999999998876543 36788
Q ss_pred CCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCC--ccEEeecCCC
Q 038031 591 FSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQN--LTELHLWDCP 661 (729)
Q Consensus 591 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~--L~~L~l~~c~ 661 (729)
+++|++|++++|. +..+|.... .....+++|+.|++++ +.++.+| ..+..+++ |+.|++++|+
T Consensus 135 l~~L~~L~L~~N~----l~~l~~~~~---~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 135 MAQLQKLYLSQNQ----ISRFPVELI---KDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCCEEECCSSC----CCSCCGGGT---C----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cccCCEEECCCCc----CCeeCHHHh---cCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999999998 777776531 0012478999999999 7788887 56667776 4889998864
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1.2e-10 Score=105.22 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=56.1
Q ss_pred CccceEEEccCCCC--CCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccc-ccccccc
Q 038031 541 SCLQELTIIGGALP--SLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVS-FPLEDKR 617 (729)
Q Consensus 541 ~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~~~~~ 617 (729)
++|++|++++|.+. .++.....+++|++|++++|.+... ..+..+++|++|++++|. +.. +|...
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~----i~~~~~~~~-- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNR----VSGGLEVLA-- 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSC----CCSCTHHHH--
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCc----ccchHHHHh--
Confidence 34444444444444 3333333444455555554444332 134445555555555555 333 33322
Q ss_pred cCCccCCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCCCCCCCCC---C--CCCCccceeecc
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCPKLKYFPE---K--GLPSSLLQLWIS 681 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~---~--~~~~~L~~L~l~ 681 (729)
..+++|++|++++ +.++.++ ..+..+++|++|++++| .++.++. . ..+++|+.|+++
T Consensus 85 -----~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 -----EKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -----HHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -----hhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 1245555555555 3344443 44555555555555553 3444443 1 114555555544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=1.2e-10 Score=105.35 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=101.9
Q ss_pred CccccccccccccccccccCcccc--cccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhcc
Q 038031 508 LPATLESLEVGNLPPSLKSLSRLE--ALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERG 585 (729)
Q Consensus 508 ~~~~L~~L~~~~~~~~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 585 (729)
.++++++| ++.++. +. .+|..+..+++|++|++++|.+..+ ...+.+++|++|++++|.+....+.
T Consensus 15 ~~~~l~~L-------~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~--- 82 (149)
T 2je0_A 15 TPSDVKEL-------VLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV--- 82 (149)
T ss_dssp CGGGCSEE-------ECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH---
T ss_pred CCccCeEE-------EccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH---
Confidence 34779999 777764 44 7888889999999999999998888 5566779999999999998875442
Q ss_pred CCCCCCCCcceeeeccCCCcccccccc--ccccccCCccCCCCCcceEEcccCCCcccccc----cCCCCCCccEEeecC
Q 038031 586 RGFHRFSSLRHLTIGGCDDDTVMVSFP--LEDKRLGTALPLPASLTSLSISRFPNLERLSS----SIVDLQNLTELHLWD 659 (729)
Q Consensus 586 ~~l~~l~~L~~L~ls~n~~~~~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~ 659 (729)
.+..+++|++|++++|. +..++ ... ..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 83 -~~~~l~~L~~L~ls~N~----i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 -LAEKCPNLTHLNLSGNK----IKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHHHCTTCCEEECTTSC----CCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -HhhhCCCCCEEECCCCc----CCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCCC
Confidence 45668999999999998 66654 333 4689999999999 57887765 678899999998864
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=1e-09 Score=103.83 Aligned_cols=123 Identities=19% Similarity=0.281 Sum_probs=82.2
Q ss_pred ceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccC
Q 038031 544 QELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALP 623 (729)
Q Consensus 544 ~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~ 623 (729)
+.++++++++..++.. .+++|++|++++|.+.... ..+..+++|++|++++|. +..++.. +|.
T Consensus 13 ~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~~ip-----~~~~~l~~L~~L~Ls~N~----i~~i~~~------~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFTLVP-----KELSNYKHLTLIDLSNNR----ISTLSNQ------SFS 75 (193)
T ss_dssp TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCCSCC-----GGGGGCTTCCEEECCSSC----CCCCCTT------TTT
T ss_pred CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCchhH-----HHhhcccCCCEEECCCCc----CCEeCHh------Hcc
Confidence 4567777766666632 3467777777777665321 256677777777777777 5555542 224
Q ss_pred CCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 624 LPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 624 ~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
.+++|++|++++ +.++.++ ..+..+++|++|++++ |.++.++...+ +++|+.|++++||.
T Consensus 76 ~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 76 NMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 677778888877 5666666 4677778888888877 46777766433 66778888887764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=8.4e-10 Score=104.35 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=49.0
Q ss_pred ccceEEEccCCCCCCCC--CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccC
Q 038031 542 CLQELTIIGGALPSLEE--EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLG 619 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 619 (729)
++++|++++|.+..+++ ..+.+++|++|++++|.+....+ ..+..+++|++|++++|. +..++...
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~~~~~~---- 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP----NAFEGASHIQELQLGENK----IKEISNKM---- 97 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSCC----CCEECSSS----
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH----hHcCCcccCCEEECCCCc----CCccCHHH----
Confidence 55555555555554442 13344555555555555444322 234455555555555555 33333211
Q ss_pred CccCCCCCcceEEcccCCCcccc-cccCCCCCCccEEeecCC
Q 038031 620 TALPLPASLTSLSISRFPNLERL-SSSIVDLQNLTELHLWDC 660 (729)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c 660 (729)
+..+++|++|++++ +.++.+ |..+..+++|++|++++|
T Consensus 98 --~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 98 --FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp --STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred --hcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 12345555555555 333333 344455555555555553
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.9e-09 Score=100.45 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=72.0
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCcc
Q 038031 543 LQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTAL 622 (729)
Q Consensus 543 L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~ 622 (729)
.+.++++++++..++. ..+++|++|++++|.+.... ...+..+++|++|++++|. +..++... +
T Consensus 9 ~~~l~~~~~~l~~~p~--~~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~----l~~~~~~~------~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQ----IQSLPDGV------F 72 (177)
T ss_dssp TTEEECCSSCCSSCCT--TCCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSC----CCCCCTTT------T
T ss_pred CCEEEecCCCCccCCC--CCCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCc----ceEeChhH------c
Confidence 3455666665555552 22356666666666655332 1245566667777777666 55555422 2
Q ss_pred CCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCc
Q 038031 623 PLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCP 684 (729)
Q Consensus 623 ~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~ 684 (729)
..+++|+.|++++ +.++.++ ..+..+++|++|++++ +.++.++...+ +++|+.|++++|+
T Consensus 73 ~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 73 DKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 3566777777776 4566665 3356667777777766 35666665432 5667777777765
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.2e-09 Score=103.37 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=87.9
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVM 608 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 608 (729)
+++.+|..+ .++|++|++++|.+..++..+..+++|++|++++|.+....+ ..|.++++|++|++++|. +
T Consensus 21 ~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~----l 90 (193)
T 2wfh_A 21 GLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNR----L 90 (193)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----C
T ss_pred CCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCc----c
Confidence 455556544 257888888888888877666666888888888888776543 367888999999999988 6
Q ss_pred ccccccccccCCccCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCC
Q 038031 609 VSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCP 661 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 661 (729)
..++.. ++..+++|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 91 ~~i~~~------~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPR------TFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTT------TTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHH------HhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 666653 235788999999998 67888874 57888999999998864
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=5.4e-09 Score=108.14 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=81.7
Q ss_pred CCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcc-eeeeccCCCcccccccccccc
Q 038031 539 NLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLR-HLTIGGCDDDTVMVSFPLEDK 616 (729)
Q Consensus 539 ~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~-~L~ls~n~~~~~~~~~~~~~~ 616 (729)
.+++|+.+++++|.+..++ ..+..+.+|+++++.+| +. .+. ...|.++++|+ .+++.+ . +..++.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~---~~aF~~~~~L~~~l~l~~-~----l~~I~~--- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIG---QRVFSNCGRLAGTLELPA-S----VTAIEF--- 290 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EEC---TTTTTTCTTCCEEEEECT-T----CCEECT---
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eeh---HHHhhCChhccEEEEEcc-c----ceEEch---
Confidence 3688999999998888888 45666789999999887 33 333 56889999999 999988 4 667765
Q ss_pred ccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEee
Q 038031 617 RLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHL 657 (729)
Q Consensus 617 ~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l 657 (729)
.+|..+++|+.+++++ +.++.++ ..|.++++|++++.
T Consensus 291 ---~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 ---GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ---hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 3457889999999988 7888888 68999999999874
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=2.3e-09 Score=101.29 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=92.7
Q ss_pred ceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccC
Q 038031 544 QELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALP 623 (729)
Q Consensus 544 ~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~ 623 (729)
+.++++++++..++... +.++++|++++|.+....+ ...+..+++|++|++++|. +..++.. ++.
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~----l~~~~~~------~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQ----LTGIEPN------AFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSC----CCCBCTT------TTT
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCC----CCCcCHh------HcC
Confidence 67888888888887532 3589999999988765433 2247888999999999988 5555321 224
Q ss_pred CCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCC--CCCccceeeccCCch
Q 038031 624 LPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKG--LPSSLLQLWISGCPL 685 (729)
Q Consensus 624 ~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~n~~ 685 (729)
.+++|++|++++ +.++.++ ..+..+++|++|++++| .++.++... .+++|++|++++|+.
T Consensus 76 ~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 76 GASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 788999999998 6777776 55888899999999984 566554433 377899999998874
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.93 E-value=5.3e-10 Score=104.17 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=83.5
Q ss_pred CCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccc--cccc
Q 038031 540 LSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPL--EDKR 617 (729)
Q Consensus 540 l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~--~~~~ 617 (729)
.++|++|++++|.+..+ .....+++|++|++++|.+....+ ..+..+++|++|++++|. +..+|. ..
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~----i~~~~~~~~l-- 109 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE----GLDQALPDLTELILTNNS----LVELGDLDPL-- 109 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS----CHHHHCTTCCEEECCSCC----CCCGGGGGGG--
T ss_pred CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCc----chhhcCCCCCEEECCCCc----CCcchhhHhh--
Confidence 44899999999988887 455667899999999998875422 234788999999999998 777765 33
Q ss_pred cCCccCCCCCcceEEcccCCCccccccc----CCCCCCccEEeecCCC
Q 038031 618 LGTALPLPASLTSLSISRFPNLERLSSS----IVDLQNLTELHLWDCP 661 (729)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~----~~~l~~L~~L~l~~c~ 661 (729)
..+++|+.|++++ +.+..+|.. +..+++|++|++++|.
T Consensus 110 -----~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 110 -----ASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -----GGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -----hcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 4689999999999 567788764 7889999999998863
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=4e-08 Score=103.98 Aligned_cols=141 Identities=11% Similarity=0.183 Sum_probs=80.6
Q ss_pred CCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCccccc
Q 038031 295 IPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKLP 374 (729)
Q Consensus 295 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 374 (729)
+..++.+.+-+ .++.+.. .+|..+ +|+.+.+.. +++.+....+.. .+|+++.+.. .++.+.
T Consensus 112 ~~~l~~i~ip~--~i~~I~~---~aF~~~-~L~~i~l~~--~i~~I~~~aF~~---------~~L~~i~lp~--~l~~I~ 172 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPK---DAFRNS-QIAKVVLNE--GLKSIGDMAFFN---------STVQEIVFPS--TLEQLK 172 (401)
T ss_dssp CSSCSEEECCT--TCCEECT---TTTTTC-CCSEEECCT--TCCEECTTTTTT---------CCCCEEECCT--TCCEEC
T ss_pred cCCccEEEECC--ccCEehH---hhcccC-CccEEEeCC--CccEECHHhcCC---------CCceEEEeCC--CccEeh
Confidence 45566666543 3444544 555554 678777754 255554432111 4677777764 344443
Q ss_pred -ccccCCCCccEEEeccCCCcccCCCCCC-cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccCCC
Q 038031 375 -QSSLSLCSLREIEIYNCSSLVSFPEVAL-PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQLP 452 (729)
Q Consensus 375 -~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 452 (729)
..+..|++|+.+++.+ +.++.++...+ ..+|+.+.+..+ +..++...| ..+++|+.+++.. +++.+...++.
T Consensus 173 ~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF-~~~~~L~~l~l~~--~l~~I~~~aF~ 246 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAF-LKTSQLKTIEIPE--NVSTIGQEAFR 246 (401)
T ss_dssp SSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTT-TTCTTCCCEECCT--TCCEECTTTTT
T ss_pred HHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHh-hCCCCCCEEecCC--CccCccccccc
Confidence 4567777888888876 56777766555 567777777632 666666555 6667777777754 34444333222
Q ss_pred -CCCCeEEE
Q 038031 453 -PSLKQLTI 460 (729)
Q Consensus 453 -~~L~~L~l 460 (729)
.+|+.+.+
T Consensus 247 ~~~L~~i~l 255 (401)
T 4fdw_A 247 ESGITTVKL 255 (401)
T ss_dssp TCCCSEEEE
T ss_pred cCCccEEEe
Confidence 34555544
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=7.3e-08 Score=101.91 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=81.8
Q ss_pred CccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhh----hhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 541 SCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEI----CKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 541 ~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
.+|+.+.+. +.+..++ ..+..+++|+.+++.++... ..+. ...|.++++|+.+.+.+ . +..++..
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~---~~aF~~c~~L~~l~l~~-~----i~~I~~~- 317 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH---PYCLEGCPKLARFEIPE-S----IRILGQG- 317 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC---TTTTTTCTTCCEECCCT-T----CCEECTT-
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC---HHHhhCCccCCeEEeCC-c----eEEEhhh-
Confidence 355555552 2234443 33344456666666554332 0111 45788899999999985 3 6666653
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC---CCccceeeccCCc
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL---PSSLLQLWISGCP 684 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~n~ 684 (729)
+|..+++|+.+.+.. .++.+. ..|.++ +|+.+++.++ .+..++...+ ..+++.|++-.+.
T Consensus 318 -----aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 318 -----LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -----TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -----hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 346789999999965 477776 678889 9999999994 6666666533 4578888887765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.91 E-value=5.9e-09 Score=97.12 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=90.9
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+++.+|..+ .++|++|++++|++..+++ ....+++|++|++++|.+....+ ..+..+++|++|++++|.
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~---- 87 (177)
T 2o6r_A 18 GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD----GVFDKLTKLTILYLHENK---- 87 (177)
T ss_dssp CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----
T ss_pred CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh----hHccCCCccCEEECCCCC----
Confidence 445555433 3689999999998888774 45667999999999998875432 357889999999999998
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCC
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCP 661 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 661 (729)
+..++... +..+++|++|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 88 l~~~~~~~------~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGV------FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHH------hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 77776543 24689999999999 67888884 46889999999999964
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=2.5e-09 Score=122.51 Aligned_cols=117 Identities=17% Similarity=0.070 Sum_probs=86.1
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVM 608 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 608 (729)
.+...+..+..++.|+.|++++|.+..++...+.+++|++|+|++|.+. .++ ..+..+++|++|+|++|. +
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp----~~~~~l~~L~~L~Ls~N~----l 282 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELP----AEIKNLSNLRVLDLSHNR----L 282 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCC----GGGGGGTTCCEEECTTSC----C
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccC----hhhhCCCCCCEEeCcCCc----C
Confidence 3444456677888899999999988888765566788999999988877 333 256888899999999988 6
Q ss_pred ccccccccccCCccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCC
Q 038031 609 VSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPK 662 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 662 (729)
..+|..++ .+++|+.|+|++ +.++.+|..+..+++|++|++++|+.
T Consensus 283 ~~lp~~~~-------~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 283 TSLPAELG-------SCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSCCSSGG-------GGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CccChhhc-------CCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCcc
Confidence 67777663 678899999988 57888887788889999999988643
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=1e-08 Score=113.59 Aligned_cols=118 Identities=14% Similarity=0.032 Sum_probs=91.0
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCc
Q 038031 542 CLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTA 621 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~ 621 (729)
.|+.|++++|.+..++. ++.+++|+.|++++|.+.. +| ..+..+++|+.|++++|. +..+| ..
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-lp----~~~~~l~~L~~L~Ls~N~----l~~lp-~l------ 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-LP----PALAALRCLEVLQASDNA----LENVD-GV------ 504 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-CC----GGGGGCTTCCEEECCSSC----CCCCG-GG------
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-cc----hhhhcCCCCCEEECCCCC----CCCCc-cc------
Confidence 58889999998888876 6667889999999988773 33 267888999999999988 66677 44
Q ss_pred cCCCCCcceEEcccCCCcccc--cccCCCCCCccEEeecCCCCCCCCCCCCC-----CCccceee
Q 038031 622 LPLPASLTSLSISRFPNLERL--SSSIVDLQNLTELHLWDCPKLKYFPEKGL-----PSSLLQLW 679 (729)
Q Consensus 622 ~~~l~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~ 679 (729)
..+++|+.|++++ +.++.+ |..+..+++|++|++++| .++.+|.... +++|+.|+
T Consensus 505 -~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 -ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 3688999999998 677777 788888999999999985 5666654321 56777775
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=2.3e-08 Score=92.65 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred ceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccC
Q 038031 544 QELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALP 623 (729)
Q Consensus 544 ~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~ 623 (729)
+.++++++++..++... +++|++|++++|.+....+ ..+.++++|++|++++|. +..+|... +.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~----l~~i~~~~------~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEP----GVFDHLVNLQQLYFNSNK----LTAIPTGV------FD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC----CCCCCTTT------TT
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCH----HHhcCCcCCCEEECCCCC----CCccChhH------hC
Confidence 67888888888887533 4889999999988876543 367888999999999988 77777643 24
Q ss_pred CCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCCCCCCC
Q 038031 624 LPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCPKLKYF 666 (729)
Q Consensus 624 ~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 666 (729)
.+++|+.|++++ +.++.+|. .+..+++|++|++++| .+...
T Consensus 79 ~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCE 120 (174)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CBCTT
T ss_pred CcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC-Ccccc
Confidence 678999999998 77888875 4888899999999885 44443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=2.3e-08 Score=92.21 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=80.2
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCc
Q 038031 542 CLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTA 621 (729)
Q Consensus 542 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~ 621 (729)
..+.+++++|.+..++... +++|++|++++|.+....+ ..|..+++|++|++++|. +..+|...
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~----l~~l~~~~------ 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNNQ----LTVLPAGV------ 73 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSC----CCCCCTTT------
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCCC----cCccChhh------
Confidence 3578889999888887433 4888999999988876543 367888999999999988 77777643
Q ss_pred cCCCCCcceEEcccCCCcccccc-cCCCCCCccEEeecCCC
Q 038031 622 LPLPASLTSLSISRFPNLERLSS-SIVDLQNLTELHLWDCP 661 (729)
Q Consensus 622 ~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 661 (729)
|..+++|++|++++ +.++.++. .+..+++|++|++++|+
T Consensus 74 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 24678899999988 67888874 58888999999998853
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=2e-08 Score=114.89 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=91.3
Q ss_pred ceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccC
Q 038031 544 QELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALP 623 (729)
Q Consensus 544 ~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~ 623 (729)
..++++.|.+...+.....+++|+.|+|++|.+.... ..+..+++|++|+|++|. +..+|..+ .
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~~l~~L~~L~Ls~N~----l~~lp~~~-------~ 267 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS-----ANIFKYDFLTRLYLNGNS----LTELPAEI-------K 267 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCC-----GGGGGCCSCSCCBCTTSC----CSCCCGGG-------G
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCCC-----hhhcCCCCCCEEEeeCCc----CcccChhh-------h
Confidence 3444455544433455666799999999999987432 245589999999999998 77888766 3
Q ss_pred CCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCCC-CCCCccceeeccCCch
Q 038031 624 LPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPEK-GLPSSLLQLWISGCPL 685 (729)
Q Consensus 624 ~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~ 685 (729)
.+++|+.|+|++ +.++.+|..+..+++|++|++++| .++.+|.. +.+++|+.|++++|+.
T Consensus 268 ~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 268 NLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 789999999999 678899999999999999999995 78899875 3488999999999974
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=3.5e-08 Score=109.38 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=89.0
Q ss_pred ccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccc
Q 038031 529 RLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVM 608 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 608 (729)
.+..+|. +..+++|+.|++++|.+..+|..++.+++|++|+|++|.+... + .+..+++|++|++++|. +
T Consensus 452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p-----~l~~l~~L~~L~Ls~N~----l 520 (567)
T 1dce_A 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-----GVANLPRLQELLLCNNR----L 520 (567)
T ss_dssp CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-----GGTTCSSCCEEECCSSC----C
T ss_pred CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-c-----ccCCCCCCcEEECCCCC----C
Confidence 4445665 7888999999999999999987777889999999999988763 2 57889999999999998 6
Q ss_pred ccc--cccccccCCccCCCCCcceEEcccCCCcccccccCC----CCCCccEEee
Q 038031 609 VSF--PLEDKRLGTALPLPASLTSLSISRFPNLERLSSSIV----DLQNLTELHL 657 (729)
Q Consensus 609 ~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~----~l~~L~~L~l 657 (729)
..+ |... ..+++|+.|++++ +.++.+|+... .+++|+.|++
T Consensus 521 ~~~~~p~~l-------~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQPL-------VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSSTTGGG-------GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcHHH-------hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 666 6655 3789999999999 67887775443 3789998864
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.57 E-value=2.8e-10 Score=108.33 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=84.9
Q ss_pred cccccccCcCCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccc
Q 038031 528 SRLEALPKGLHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTV 607 (729)
Q Consensus 528 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~ 607 (729)
+.++.+|..+..+++|++|++++|.+..++ ....+++|++|++++|.+... + ..+..+++|++|++++|.
T Consensus 35 ~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-~----~~~~~~~~L~~L~L~~N~---- 104 (198)
T 1ds9_A 35 PPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-E----NLDAVADTLEELWISYNQ---- 104 (198)
T ss_dssp TTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-S----SHHHHHHHCSEEEEEEEE----
T ss_pred CcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-c----chhhcCCcCCEEECcCCc----
Confidence 455666667788899999999999888876 455558888888888877632 1 234556888888888887
Q ss_pred cccccccccccCCccCCCCCcceEEcccCCCccccc--ccCCCCCCccEEeecCCC
Q 038031 608 MVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS--SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~ 661 (729)
+..+|. . ..+++|+.|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 105 l~~l~~-~-------~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 105 IASLSG-I-------EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCCHHH-H-------HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCc-c-------ccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 666663 2 2568888888888 5677665 367788888888888864
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=3.9e-06 Score=88.89 Aligned_cols=300 Identities=13% Similarity=0.106 Sum_probs=153.8
Q ss_pred CCCCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhhccCcccEEEeeecCCcccc
Q 038031 294 RIPKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCELSCRLEYLGLLYCEGLVKL 373 (729)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 373 (729)
.+.+|+++.+.+ .++.+.. .+|..+++|+.+++.+ +++.+.... +.. +.+|+.+.+... +..+
T Consensus 69 ~c~~L~~i~lp~--~i~~I~~---~aF~~c~~L~~i~lp~--~l~~I~~~a----F~~----c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIGE---FAFENCSKLEIINIPD--SVKMIGRCT----FSG----CYALKSILLPLM--LKSI 131 (394)
T ss_dssp TCTTEEEEECCT--TCCEECT---TTTTTCTTCCEECCCT--TCCEECTTT----TTT----CTTCCCCCCCTT--CCEE
T ss_pred CCCCceEEEeCC--CccCcch---hHhhCCCCCcEEEeCC--CceEccchh----hcc----cccchhhcccCc--eeee
Confidence 566777777742 4666666 7788899999999864 255443321 111 255655544322 2222
Q ss_pred c-ccccCCCCccEEEeccCCCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCccEEEeecCCCcccccccC
Q 038031 374 P-QSSLSLCSLREIEIYNCSSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSLEILNIQYCCSLRYIVEVQ 450 (729)
Q Consensus 374 ~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 450 (729)
. ..+..+..+ ...+. ..+..+....| +.+|+.+.+.++ +..++...+ ..+.+|+.+.+.. .++.+...+
T Consensus 132 ~~~aF~~~~~~-~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F-~~c~~L~~i~l~~--~~~~I~~~~ 203 (394)
T 4fs7_A 132 GVEAFKGCDFK-EITIP--EGVTVIGDEAFATCESLEYVSLPDS--METLHNGLF-SGCGKLKSIKLPR--NLKIIRDYC 203 (394)
T ss_dssp CTTTTTTCCCS-EEECC--TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCBCCCCT--TCCEECTTT
T ss_pred cceeeeccccc-ccccC--ccccccchhhhcccCCCcEEecCCc--cceeccccc-cCCCCceEEEcCC--CceEeCchh
Confidence 2 233333322 22221 23334444333 677888877643 445555554 6677777777743 244433332
Q ss_pred CCCCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCCccccccccccccccccccCccc
Q 038031 451 LPPSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLSRL 530 (729)
Q Consensus 451 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~~~~~~~~l~~~~~l 530 (729)
+ .+|..++.+.++..........+....|+.+.+... +
T Consensus 204 F---------~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~---------------------------------~ 241 (394)
T 4fs7_A 204 F---------AECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS---------------------------------F 241 (394)
T ss_dssp T---------TTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT---------------------------------C
T ss_pred h---------ccccccceeecCCCceEeehhhcccCCCceEEECCC---------------------------------c
Confidence 2 133344444222211110000011113444443221 1
Q ss_pred cccc-CcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccc
Q 038031 531 EALP-KGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVM 608 (729)
Q Consensus 531 ~~l~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 608 (729)
..+. ..+..+..|+.+.+..+. ..+. .....+..++.+......+. ...+..+.+|+.+.+..+ +
T Consensus 242 ~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~-------~~~F~~~~~L~~i~l~~~-----i 308 (394)
T 4fs7_A 242 TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP-------EKTFYGCSSLTEVKLLDS-----V 308 (394)
T ss_dssp CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC-------TTTTTTCTTCCEEEECTT-----C
T ss_pred eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec-------cccccccccccccccccc-----c
Confidence 1111 124455666666665542 2233 33344466666666554322 235566777777777653 4
Q ss_pred ccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCC
Q 038031 609 VSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGC 683 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n 683 (729)
..++. .+|..+++|+.+++.+ .++.+. ..|.+|++|+.+.+..+ ++.+....+ +.+|+.+++..+
T Consensus 309 ~~I~~------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGE------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECT------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceech------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 44443 2345667777777764 366665 56777777887777652 666666544 567777777543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.50 E-value=3.4e-07 Score=84.34 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=82.2
Q ss_pred CcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc
Q 038031 565 NLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS 644 (729)
Q Consensus 565 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 644 (729)
..+++++++|.+..... .+ .++|++|++++|. +..++... +..+++|++|++++ +.++.++.
T Consensus 10 ~~~~l~~s~n~l~~ip~-----~~--~~~l~~L~L~~N~----i~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~ 71 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-----GI--PTTTQVLYLYDNQ----ITKLEPGV------FDRLTQLTRLDLDN-NQLTVLPA 71 (170)
T ss_dssp ETTEEECTTSCCSSCCS-----CC--CTTCSEEECCSSC----CCCCCTTT------TTTCTTCSEEECCS-SCCCCCCT
T ss_pred CCCEEEeCCCCcCccCc-----cC--CCCCcEEEcCCCc----CCccChhh------hcCcccCCEEECCC-CCcCccCh
Confidence 45789999998776421 22 4889999999999 77775432 35789999999999 78999884
Q ss_pred -cCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 645 -SIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 645 -~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
.+..+++|++|++++ |.++.++...+ +++|+.|++++|+.
T Consensus 72 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 72 GVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 568999999999999 57888887533 78999999999975
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=6.4e-06 Score=87.19 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=100.8
Q ss_pred CCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
......|+.+.+... +..+. .....+..++.+.+..+...-. ...+..+..++.+...... ++.
T Consensus 226 ~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~-------i~~-- 290 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVI-------VPE-- 290 (394)
T ss_dssp TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSE-------ECT--
T ss_pred hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceee-----ccccccccccceeccCcee-------ecc--
Confidence 345567888888644 23444 4455668999999987643321 4577888899988776532 222
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCchhHHhhhc
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPLIEEKCRK 692 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~l~~~~~~ 692 (729)
.+|....+|+.+.+.+ .++.++ ..|.+|++|+.+++.+ .++.+....+ +.+|+.+.+..+ ++ .
T Consensus 291 ----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~----~ 356 (394)
T 4fs7_A 291 ----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR----K 356 (394)
T ss_dssp ----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC----E
T ss_pred ----cccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc----E
Confidence 2345789999999976 477776 6789999999999965 4888877655 678999988654 22 2
Q ss_pred cCCCCcccccccceEEeCC
Q 038031 693 DGGQYWDLLTHIPCVKIDW 711 (729)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~ 711 (729)
-+...+....+++.+.+..
T Consensus 357 I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEG
T ss_pred ehHHHhhCCCCCCEEEECC
Confidence 3445666677777777644
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.46 E-value=5.1e-07 Score=83.46 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=81.0
Q ss_pred cceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCcccccc-
Q 038031 566 LQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLSS- 644 (729)
Q Consensus 566 L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~- 644 (729)
-+.++++++.+..... .+ .++|++|++++|. +..++... +..+++|+.|++++ +.++.+|.
T Consensus 14 ~~~l~~~~n~l~~iP~-----~~--~~~L~~L~Ls~N~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~i~~~ 75 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-----GI--PTDKQRLWLNNNQ----ITKLEPGV------FDHLVNLQQLYFNS-NKLTAIPTG 75 (174)
T ss_dssp SSEEECCSSCCSSCCS-----CC--CTTCSEEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CcEEEeCCCCCCccCC-----Cc--CCCCcEEEeCCCC----ccccCHHH------hcCCcCCCEEECCC-CCCCccChh
Confidence 3789999988754321 22 3899999999999 77775422 35789999999999 78999985
Q ss_pred cCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCch
Q 038031 645 SIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 645 ~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
.+..+++|++|++++ |.++.++...+ +++|+.|++++|+.
T Consensus 76 ~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 76 VFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred HhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCCc
Confidence 468999999999999 67888887533 78999999999984
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=5.9e-09 Score=99.09 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=96.4
Q ss_pred ccceEEEccC--CCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccccccC
Q 038031 542 CLQELTIIGG--ALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLG 619 (729)
Q Consensus 542 ~L~~L~l~~~--~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 619 (729)
.|+...+.++ .+..++.....+++|++|++++|.+... . .+..+++|++|++++|. +..+|....
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-----~-~~~~l~~L~~L~l~~n~----l~~l~~~~~--- 90 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----S-SLSGMENLRILSLGRNL----IKKIENLDA--- 90 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-----C-CHHHHTTCCEEEEEEEE----ECSCSSHHH---
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-----c-ccccCCCCCEEECCCCC----cccccchhh---
Confidence 4445555444 3334443455668999999999988762 2 67889999999999998 778886552
Q ss_pred CccCCCCCcceEEcccCCCcccccccCCCCCCccEEeecCCCCCCCCCC---CCCCCccceeeccCCchhH
Q 038031 620 TALPLPASLTSLSISRFPNLERLSSSIVDLQNLTELHLWDCPKLKYFPE---KGLPSSLLQLWISGCPLIE 687 (729)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~n~~l~ 687 (729)
.+++|+.|++++ +.++.+| .+..+++|++|++++ +.++.++. ...+++|++|++++|+...
T Consensus 91 ----~~~~L~~L~L~~-N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 91 ----VADTLEELWISY-NQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ----HHHHCSEEEEEE-EECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ----cCCcCCEEECcC-CcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 568999999999 6788887 688899999999999 46777654 2347899999999997643
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=3e-06 Score=88.06 Aligned_cols=96 Identities=24% Similarity=0.165 Sum_probs=68.6
Q ss_pred ccccccCcCCCCCccceEEEcc-CCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcc
Q 038031 529 RLEALPKGLHNLSCLQELTIIG-GALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDT 606 (729)
Q Consensus 529 ~l~~l~~~~~~l~~L~~L~l~~-~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~ 606 (729)
+++.+|. +..+++|++|+|++ |.+..++ ..++.+++|+.|+|++|.+....+ ..|.++++|+.|+|++|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~--- 91 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP----DAFHFTPRLSRLNLSFNA--- 91 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT----TGGGSCSCCCEEECCSSC---
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH----HHhcCCcCCCEEeCCCCc---
Confidence 6777887 88888888888885 8787777 445666888888888887766543 356778888888888887
Q ss_pred ccccccccccccCCccCCCCCcceEEcccCCCccc
Q 038031 607 VMVSFPLEDKRLGTALPLPASLTSLSISRFPNLER 641 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 641 (729)
+..+|.... ..+ .|+.|++.+ +.+..
T Consensus 92 -l~~~~~~~~------~~~-~L~~l~l~~-N~~~c 117 (347)
T 2ifg_A 92 -LESLSWKTV------QGL-SLQELVLSG-NPLHC 117 (347)
T ss_dssp -CSCCCSTTT------CSC-CCCEEECCS-SCCCC
T ss_pred -cceeCHHHc------ccC-CceEEEeeC-CCccC
Confidence 667775432 223 388888887 44543
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=3.3e-06 Score=76.71 Aligned_cols=90 Identities=9% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCccEEEEeccCCCchhhhhhhhhhhcCCCccEEEeccCCCccccchhhhHHHHhhhhh---ccCcccEEEeeecCCccc
Q 038031 296 PKLEELEIKNIKNETHIWKSYNELLQDICSLKRLTIRRCPKIQSLVVEEEKDQQQQLCE---LSCRLEYLGLLYCEGLVK 372 (729)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~l~~ 372 (729)
..|++|++++|. +++... ..+..+++|+.|++++|..+++- ++..+.. .+++|++|+|++|..++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~-------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDG-------CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHH-------HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHH-------HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468999999987 555433 45678899999999999888763 3333333 135788888888876664
Q ss_pred cc-ccccCCCCccEEEeccCCCccc
Q 038031 373 LP-QSSLSLCSLREIEIYNCSSLVS 396 (729)
Q Consensus 373 ~~-~~~~~l~~L~~L~l~~c~~l~~ 396 (729)
-. ..+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 21 2455678888888888877765
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.17 E-value=7e-05 Score=79.12 Aligned_cols=286 Identities=15% Similarity=0.168 Sum_probs=143.5
Q ss_pred cccEEEeeecCCccccc-ccccCCCCccEEEeccC--CCcccCCCCCC--cCCcceEEEecCCCCCccccccccCCCCCc
Q 038031 358 RLEYLGLLYCEGLVKLP-QSSLSLCSLREIEIYNC--SSLVSFPEVAL--PSKLKKIQIRHCDALKSLPEAWMCDTNSSL 432 (729)
Q Consensus 358 ~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c--~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 432 (729)
.|+++.+-.. ++.+. ..+.++.+|+.+.+..+ ..++.+....| +.+|+.+.+.. .++.++...+ ..+.+|
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF-~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAF-HHCEEL 139 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTT-TTCTTC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhh-hhhccc
Confidence 4888888543 44444 46778888999888763 34677766555 56677655532 2555655555 677888
Q ss_pred cEEEeecCCCcccccccCCC--CCCCeEEEecCCCCcccccccCccccccccccccccceEEecCCCCccccccCCCC--
Q 038031 433 EILNIQYCCSLRYIVEVQLP--PSLKQLTIWRCDNIRTLTVEEGIQSSSSRRYTSSLLEKLEIWDCPSLTCIFSKNEL-- 508 (729)
Q Consensus 433 ~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~~~L~~L~l~~c~~l~~~~~~~~~-- 508 (729)
+.+.+.. .+..+....+. .+|+.+.+.+ .++.+ ....+. .. .|+.+.+... +.. +....+
T Consensus 140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I--~~~aF~-----~~--~l~~i~ip~~--~~~-i~~~af~~ 203 (394)
T 4gt6_A 140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAI--EERAFT-----GT--ALTQIHIPAK--VTR-IGTNAFSE 203 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEE--CTTTTT-----TC--CCSEEEECTT--CCE-ECTTTTTT
T ss_pred ccccccc--eeeeecccceecccccccccccc--eeeEe--cccccc-----cc--ceeEEEECCc--ccc-cccchhhh
Confidence 8888853 33444433222 3455554432 23333 333331 12 4555555321 111 100000
Q ss_pred ccccccccccc-----cccccccCcccccc-cCcCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhh
Q 038031 509 PATLESLEVGN-----LPPSLKSLSRLEAL-PKGLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSL 581 (729)
Q Consensus 509 ~~~L~~L~~~~-----~~~~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~ 581 (729)
..+++...... +...+..+...... ...+.....+..+.+... +..+. .....+.+|+.+.+.+.-.. +.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~--I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS--IG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE--EC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce--ec
Confidence 01111110000 00000000000000 000011112222222111 11222 23344567777777554221 11
Q ss_pred hhccCCCCCCCCcceeeeccCCCccccccccccccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCC
Q 038031 582 IERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLEDKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 582 ~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 660 (729)
...|.++++|+.+.+.. . +..++.. +|..+++|+.+.+.. .++.+. ..|.+|.+|+.+.+-.
T Consensus 281 ---~~aF~~c~~L~~i~l~~-~----i~~I~~~------aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~- 343 (394)
T 4gt6_A 281 ---TGAFMNCPALQDIEFSS-R----ITELPES------VFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS- 343 (394)
T ss_dssp ---TTTTTTCTTCCEEECCT-T----CCEECTT------TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT-
T ss_pred ---CcccccccccccccCCC-c----ccccCce------eecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc-
Confidence 34667788888887754 2 5555543 346678888888875 366665 6778888888888854
Q ss_pred CCCCCCCCCCC--CCccceeeccCCch
Q 038031 661 PKLKYFPEKGL--PSSLLQLWISGCPL 685 (729)
Q Consensus 661 ~~l~~l~~~~~--~~~L~~L~l~~n~~ 685 (729)
.++.+....+ +.+|+.+++.++..
T Consensus 344 -sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 344 -SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp -TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred -ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 3677766544 57788888887654
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.1e-06 Score=79.84 Aligned_cols=88 Identities=8% Similarity=0.048 Sum_probs=52.9
Q ss_pred CcccEEEeeecCCcccccccccCCCCccEEEeccCCCcccCC--CCCC----cCCcceEEEecCCCCCccccccccCCCC
Q 038031 357 CRLEYLGLLYCEGLVKLPQSSLSLCSLREIEIYNCSSLVSFP--EVAL----PSKLKKIQIRHCDALKSLPEAWMCDTNS 430 (729)
Q Consensus 357 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 430 (729)
.+|++|++++|.....--..+..+++|++|++++|..+++-. .... .++|++|++++|..+++.....+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 456777777776322222345667777777777777666521 1111 23577777777776766443333 4567
Q ss_pred CccEEEeecCCCccc
Q 038031 431 SLEILNIQYCCSLRY 445 (729)
Q Consensus 431 ~L~~L~l~~c~~l~~ 445 (729)
+|++|++++|+.+++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777776664
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.11 E-value=4.1e-06 Score=87.05 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=25.7
Q ss_pred ccccCccccccc-CcCCCCCccceEEEccCCCCCCCC-CCCCCCCcceEEecCchhh
Q 038031 523 SLKSLSRLEALP-KGLHNLSCLQELTIIGGALPSLEE-EDGLPTNLQSLDIRGNMEI 577 (729)
Q Consensus 523 ~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~L~~~~~~ 577 (729)
++.+.+.+..++ ..|..+++|+.|+|++|+|..+++ .+..+++|+.|+|++|.+.
T Consensus 37 ~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 37 YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 444334444444 234455555555555555544442 2233455555555555444
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=0.00017 Score=76.21 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=79.5
Q ss_pred cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.|.++..|+.+.+.++ +..+. .....+++|+.+.+... +. .+. ...|.++.+|+.+.|..+ +..+..
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~-~I~---~~aF~~c~~L~~i~lp~~-----v~~I~~- 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-IT-ELP---ESVFAGCISLKSIDIPEG-----ITQILD- 327 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EEC---TTTTTTCTTCCEEECCTT-----CCEECT-
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCCc-cc-ccC---ceeecCCCCcCEEEeCCc-----ccEehH-
Confidence 4677788888888654 23444 44555688999888642 22 222 457889999999999763 555554
Q ss_pred ccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCCCCccceeeccC
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGLPSSLLQLWISG 682 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 682 (729)
.+|..+++|+.+.+.. .++.+. ..|.+|++|+.+++.++.. ....-....+|+.+.+..
T Consensus 328 -----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 328 -----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp -----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC-------
T ss_pred -----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeCC
Confidence 3456789999999975 477776 6789999999999987421 111111245566665543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00032 Score=73.56 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=68.8
Q ss_pred CCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCccccccccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLED 615 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 615 (729)
+..+..|+.+.+..+ +..+. .....+.+|+.+.+..+ +.. +. ...|..+++|+.+.+.++. +..++..
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i~---~~aF~~c~~L~~i~l~~~~----i~~I~~~- 304 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-VP---YLLCSGCSNLTKVVMDNSA----IETLEPR- 304 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-EC---TTTTTTCTTCCEEEECCTT----CCEECTT-
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-cc---ccccccccccccccccccc----cceehhh-
Confidence 456677777777654 44554 33444567777777543 111 11 3466777788888777655 5555543
Q ss_pred cccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCC
Q 038031 616 KRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEK 669 (729)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~ 669 (729)
+|..+++|+.+.+.. .++.|. ..|.+|++|+.+.+.. .++.+...
T Consensus 305 -----aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 305 -----VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp -----TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred -----hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence 345677788887764 366665 5677777777777744 25555443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.01 E-value=0.00086 Score=70.25 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=91.5
Q ss_pred cCCCCCccceEEEccCCCCCCC-CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCCCcccccccccc
Q 038031 536 GLHNLSCLQELTIIGGALPSLE-EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCDDDTVMVSFPLE 614 (729)
Q Consensus 536 ~~~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 614 (729)
.+.....|+.+.+..+ +..+. .....+.+|+.+.+..+ +.. +. ...+..+.+|+.+.+..+ +..++..
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~---~~aF~~~~~l~~i~l~~~-----i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IG---SFLLQNCTALKTLNFYAK-----VKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-EC---TTTTTTCTTCCEEEECCC-----CSEECTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-eC---ccccceeehhcccccccc-----ceecccc
Confidence 3456777888877644 34444 34455688999998765 222 22 457788999999998763 5556543
Q ss_pred ccccCCccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCC
Q 038031 615 DKRLGTALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGC 683 (729)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n 683 (729)
+|..+++|+.+.+.+ +.++.++ ..|.+|.+|+.+.+.. .++.+....+ +.+|+.+.+..+
T Consensus 281 ------aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 ------LCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ------TTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ------ccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 346789999999987 6788887 7889999999999965 4777877655 577888887543
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=3.4e-07 Score=95.75 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=8.7
Q ss_pred ccceEEecCCC
Q 038031 487 LLEKLEIWDCP 497 (729)
Q Consensus 487 ~L~~L~l~~c~ 497 (729)
.++.|++++|.
T Consensus 73 ~L~~L~Ls~n~ 83 (372)
T 3un9_A 73 SLRQLNLAGVR 83 (372)
T ss_dssp TCCEEECTTSC
T ss_pred hCCEEEecCCC
Confidence 78888888854
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=1.8e-05 Score=82.00 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=37.8
Q ss_pred ccccccCCCCccEEEeccCCCcccCCCCCCcCCcceEEEecCCCCCccc-cccccCCCCCccEEEeec
Q 038031 373 LPQSSLSLCSLREIEIYNCSSLVSFPEVALPSKLKKIQIRHCDALKSLP-EAWMCDTNSSLEILNIQY 439 (729)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~ 439 (729)
+...+..+|+|+.|.+++|..+ .++.. ..++|++|++..|. +..-. .......+|+|+.|+++.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEec
Confidence 3344566788888888775333 23332 26788888888776 33221 111113578888888753
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=3.1e-07 Score=96.07 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=7.7
Q ss_pred CCCccEEEeccC
Q 038031 380 LCSLREIEIYNC 391 (729)
Q Consensus 380 l~~L~~L~l~~c 391 (729)
+++|+.|++++|
T Consensus 71 ~~~L~~L~Ls~n 82 (372)
T 3un9_A 71 LSSLRQLNLAGV 82 (372)
T ss_dssp HTTCCEEECTTS
T ss_pred HhhCCEEEecCC
Confidence 356677777764
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=5e-05 Score=78.61 Aligned_cols=138 Identities=17% Similarity=-0.004 Sum_probs=78.6
Q ss_pred CCCCCccceEEEccCCCCCCCCCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccC--CCccc--ccccc
Q 038031 537 LHNLSCLQELTIIGGALPSLEEEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGC--DDDTV--MVSFP 612 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n--~~~~~--~~~~~ 612 (729)
+..+|+|+.|.+++|.-..++. . ..++|+.|++..|.+...... ......+|+|+.|+|+.+ ..... +..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~--~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE--DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH--HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH--HHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4567888888888772112333 2 257888888888776554322 111236888888888642 11000 11111
Q ss_pred ccccccCCccCCCCCcceEEcccCCCcccccc---cCCCCCCccEEeecCCCCCCCC-----CCC-CCCCccceeeccCC
Q 038031 613 LEDKRLGTALPLPASLTSLSISRFPNLERLSS---SIVDLQNLTELHLWDCPKLKYF-----PEK-GLPSSLLQLWISGC 683 (729)
Q Consensus 613 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c~~l~~l-----~~~-~~~~~L~~L~l~~n 683 (729)
... .-..+|+|+.|++.+|......+. ....+++|++|+++. +.++.. +.. ..+++|+.|++++|
T Consensus 244 ~~l-----~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 244 PLF-----SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGS-----CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHH-----hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 110 001468899998888543322221 123578899999977 455552 221 12578889999888
Q ss_pred c
Q 038031 684 P 684 (729)
Q Consensus 684 ~ 684 (729)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 5
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=2.6e-05 Score=72.65 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=38.6
Q ss_pred CCCCCccceEEEccC-CCCCCC-----CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 537 LHNLSCLQELTIIGG-ALPSLE-----EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 537 ~~~l~~L~~L~l~~~-~i~~l~-----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
+...+.|++|++++| .+..-. ......++|++|+|++|.+...........+...++|++|+|++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 456677888888877 555321 2233346777777777776544322112234445667777777666
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.15 E-value=5.8e-05 Score=70.20 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=49.0
Q ss_pred CcCCCCCccceEEEccCCCCCCC-----CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeee--ccCCC
Q 038031 535 KGLHNLSCLQELTIIGGALPSLE-----EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTI--GGCDD 604 (729)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~i~~l~-----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l--s~n~~ 604 (729)
..+...++|++|++++|.|..-. ......++|++|+|++|.+...........+...++|++|++ ++|..
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 34556788999999999776422 223344789999999999877543222346677788888888 77763
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.72 E-value=0.00034 Score=68.53 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCCCccceEEEccCCCCCCCC---CCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 538 HNLSCLQELTIIGGALPSLEE---EDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 538 ~~l~~L~~L~l~~~~i~~l~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
.++++|+.|++++|+|..++. ....+++|+.|+|++|.+..... ...+..+ +|++|++++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~---l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE---LDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG---GGGGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh---hhhcccC-CcceEEccCCc
Confidence 457888888888888777652 22345677777777776654311 1122223 66666666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.40 E-value=0.0016 Score=63.82 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=50.1
Q ss_pred ccCcccEEEeeecCCcc--cccccccCCCCccEEEeccCCCcccCCCCCCcC--CcceEEEecCCCCCcccc------cc
Q 038031 355 LSCRLEYLGLLYCEGLV--KLPQSSLSLCSLREIEIYNCSSLVSFPEVALPS--KLKKIQIRHCDALKSLPE------AW 424 (729)
Q Consensus 355 ~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~--~L~~L~l~~~~~l~~~~~------~~ 424 (729)
.+++|++|+|++|.... .++..+..+++|+.|+|++ +.+..+.....+. +|++|++++|+.-..++. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34788888888887533 4455666788888888887 5666654333333 788888888773333321 11
Q ss_pred ccCCCCCccEEEe
Q 038031 425 MCDTNSSLEILNI 437 (729)
Q Consensus 425 ~~~~l~~L~~L~l 437 (729)
+ ..+|+|+.|+=
T Consensus 247 l-~~~P~L~~LDg 258 (267)
T 3rw6_A 247 R-ERFPKLLRLDG 258 (267)
T ss_dssp H-HHCTTCCEESS
T ss_pred H-HHCcccCeECC
Confidence 1 45566666553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.26 E-value=0.064 Score=45.97 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCcceEEcccCCCccccc-ccCCCCCCccEEeecCCC
Q 038031 625 PASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDCP 661 (729)
Q Consensus 625 l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 661 (729)
+++|+.|+|++ |.|+.++ ..+..+++|++|++++|+
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 35677777776 6666666 445566666666666653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.20 E-value=0.053 Score=46.52 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=26.5
Q ss_pred eEEcccCCCcc--cccccCCCCCCccEEeecCCCCCCCCCCCCC--CCccceeeccCCc
Q 038031 630 SLSISRFPNLE--RLSSSIVDLQNLTELHLWDCPKLKYFPEKGL--PSSLLQLWISGCP 684 (729)
Q Consensus 630 ~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~ 684 (729)
.++.++ ..++ .+|..+. ++|++|+|++ |.++.++...+ +++|+.|++.+||
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 344444 4454 5553332 3566666665 45566655433 4556666666665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.63 E-value=0.02 Score=52.79 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=38.6
Q ss_pred CCCCccceEEEccC-CCCCCC-----CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccCC
Q 038031 538 HNLSCLQELTIIGG-ALPSLE-----EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGCD 603 (729)
Q Consensus 538 ~~l~~L~~L~l~~~-~i~~l~-----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 603 (729)
.+-+.|++|+++++ +|..-. ........|+.|+|++|.+...........+..-+.|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 44567888888775 443211 1222346777777777777655432223344455677777777776
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.25 E-value=0.012 Score=54.21 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred CcCCCCCccceEEEccCCCCCCC-----CCCCCCCCcceEEecCchhhhhhhhhccCCCCCCCCcceeeeccC
Q 038031 535 KGLHNLSCLQELTIIGGALPSLE-----EEDGLPTNLQSLDIRGNMEICKSLIERGRGFHRFSSLRHLTIGGC 602 (729)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~i~~l~-----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 602 (729)
..+..-+.|++|++++|+|..-. ........|++|+|++|.+...........+..-+.|++|+|++|
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34455678999999999776432 222234789999999999887654322345566667888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.67 E-value=63 Score=25.49 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=28.7
Q ss_pred CccCCCCCcceEEcccCCCccccc-ccCCCCCCccEEeecCC
Q 038031 620 TALPLPASLTSLSISRFPNLERLS-SSIVDLQNLTELHLWDC 660 (729)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 660 (729)
.+|..+++|+.+.|.. .++.|. ..|.+|.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 4456778888888875 456665 67888899998888763
Done!