BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038032
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
 pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
           Human Receptor Analogue 6sln
 pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
           Avian Receptor Analogue 3sln
          Length = 503

 Score = 33.1 bits (74), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 93  LSHSQFTY-ILNLTA--GQKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTLLSNFRASLTA 149
           L+H +F Y  LN+T    +KF +LY +   +PG D  + F   +A     +S  R+  T 
Sbjct: 154 LTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTV 213


>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
 pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
           Human Receptor Analogue 6sln
 pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
           Human Receptor Analogue Lstc
 pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
           Avian Receptor Analogue 3sln
          Length = 503

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 93  LSHSQFTY-ILNLTA--GQKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTLLSNFRASLTA 149
           L+H +F Y  LN+T    +KF +LY +   +PG D  +     +A     +S  R+  T 
Sbjct: 154 LTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTV 213


>pdb|1A8P|A Chain A, Ferredoxin Reductase From Azotobacter Vinelandii
          Length = 258

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 74  NDTSRIFTTPQQPPYSAARLSHSQFTYILNLTAGQKFIRLYFYSTSYPGFDRPKAFFSVK 133
           NDT   F T + P   + R  + QF  I     G+  +R Y  S + P ++    FFS+K
Sbjct: 16  NDTLFSFKTTRNP---SLRFENGQFVMIGLEVDGRPLMRAY--SIASPNYEEHLEFFSIK 70

Query: 134 AGSFTLLSNFRASLTADAL 152
             +  L S  +     D L
Sbjct: 71  VQNGPLTSRLQHLKEGDEL 89


>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
           Domains
          Length = 308

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 198 PLNLYYDLSFLFVGQEKRFMIETSNALESLYRINVGG---SDISPLGDTGMFRTWSADDA 254
           PL    +L  L++   +   I     L +L  +++G    SD++PL +     T  ADD 
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 255 YLTDARPSA 263
            ++D  P A
Sbjct: 184 KISDISPLA 192


>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
           Glutaredoxin 3
 pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
           Glutaredoxin 3
          Length = 112

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 95  HSQFTYILNLTAGQKFIRLYFYST 118
             QFTY+    AG K I LYF+++
Sbjct: 8   QEQFTYLTTTAAGDKLIVLYFHTS 31


>pdb|2QDX|A Chain A, P.Aeruginosa Fpr With Fad
 pdb|3CRZ|A Chain A, Ferredoxin-Nadp Reductase
          Length = 257

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 74  NDTSRIFTTPQQPPYSAARLSHSQFTYILNLTAGQKFIRLYFYSTSYPGFDRPKAFFSVK 133
           NDT   F T + P     R    QF  I     G+  +R Y  S + P ++    FFS+K
Sbjct: 15  NDTLFSFKTTRNP---GLRFKTGQFVMIGLEVDGRPLMRAY--SIASPNYEEHLEFFSIK 69

Query: 134 AGSFTLLSNFRASLTADAL 152
                L S  +     D L
Sbjct: 70  VPDGPLTSRLQHLKEGDEL 88


>pdb|1ZVY|A Chain A, Crystal Structure Of The Vhh D3-l11 In Complex With Hen
          Egg White Lysozyme
          Length = 136

 Score = 27.3 bits (59), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 35 EAVDSILLACGSNGTFHSLEYRTW 58
          +A  S+ L+C ++G+  S+EY TW
Sbjct: 13 QAGGSLRLSCAASGSTDSIEYMTW 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,444,907
Number of Sequences: 62578
Number of extensions: 339563
Number of successful extensions: 836
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 9
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)