Query 038032
Match_columns 279
No_of_seqs 180 out of 636
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 5.7E-39 1.2E-43 324.4 22.3 196 34-258 20-229 (623)
2 PF12819 Malectin_like: Carboh 100.0 3.4E-37 7.3E-42 291.9 20.4 183 42-251 1-205 (347)
3 PF11721 Malectin: Di-glucose 99.9 7.2E-23 1.6E-27 176.7 9.9 150 39-192 2-174 (174)
4 PLN03150 hypothetical protein; 99.9 3.4E-22 7.3E-27 202.5 15.4 149 39-199 193-364 (623)
5 PF12819 Malectin_like: Carboh 99.8 5.9E-18 1.3E-22 160.6 13.1 157 36-197 177-347 (347)
6 KOG3593 Predicted receptor-lik 97.1 0.0004 8.7E-09 64.3 3.8 110 38-150 60-173 (355)
7 PF03944 Endotoxin_C: delta en 32.6 2.8E+02 0.006 22.7 12.0 83 107-198 52-143 (143)
8 PF03422 CBM_6: Carbohydrate b 30.4 2.6E+02 0.0056 21.6 10.3 44 98-147 34-81 (125)
9 KOG1263 Multicopper oxidases [ 23.5 3.5E+02 0.0075 27.9 7.9 32 100-139 209-241 (563)
10 TIGR01480 copper_res_A copper- 23.0 6E+02 0.013 26.3 9.6 33 99-138 259-291 (587)
11 PF08400 phage_tail_N: Prophag 21.1 90 0.0019 26.0 2.6 18 98-115 47-64 (134)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-39 Score=324.35 Aligned_cols=196 Identities=18% Similarity=0.266 Sum_probs=153.5
Q ss_pred CCCCceEEEeeCCCCcc-cCCCCCeeeCCCCCCCcceeccCCCCcccCCCCCCcccceeeccCC----CcEEEEEecC-C
Q 038032 34 YEAVDSILLACGSNGTF-HSLEYRTWIGDISPGHSYYFQPKNDTSRIFTTPQQPPYSAARLSHS----QFTYILNLTA-G 107 (279)
Q Consensus 34 ~~p~~~~~InCG~~~~~-~d~~gr~W~~D~~~~~~~~f~~~~~~~~~~~~~~~~~Y~TAR~f~~----~~tY~fpv~~-G 107 (279)
...+++|+||||++.+. +|.+||+|++|.. |..+.....+.+..++++|+|||+|+. ..||+||+.+ |
T Consensus 20 ~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~------~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g 93 (623)
T PLN03150 20 SPEPFTMRISCGARVNVRTAPTNTLWYKDFA------YTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPKG 93 (623)
T ss_pred cCCCccEEEeCCCCCCcccCCCCCEEcCCcc------cccCccccccCcccccchhhccccCCcccccccceEeeecCCC
Confidence 33668899999999876 4678999999975 532222112233345678999999996 5799999876 8
Q ss_pred cEEEEEEeeeccCCCCCCCCceEEEEECC---EEEEeeecccccccccCCceEEEEEEEeecCCCCeEEEEEEeCCCCCC
Q 038032 108 QKFIRLYFYSTSYPGFDRPKAFFSVKAGS---FTLLSNFRASLTADALGEDSFFKEFCINVEESQRLLNITFKSSPDYKD 184 (279)
Q Consensus 108 ~ylVRLhF~~~~y~~~~~~~~~FdV~i~~---~~ll~~f~i~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~f~P~~~~~~ 184 (279)
+|+|||||++..|++++ ..+.|||++++ .+++.+|+.. ...++||+++++++ +.|.|||.|.. +
T Consensus 94 ~ylVRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~~-------~~~v~~E~i~~~~~--~~l~vcf~~~~---~ 160 (623)
T PLN03150 94 HYSVRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSSH-------DEQVFAEALVFLTD--GSASICFHSTG---H 160 (623)
T ss_pred cEEEEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCcccC-------CCcEEEEEEEEecC--CcEEEEEecCC---C
Confidence 99999999988777766 67899999999 6666666532 24589999999998 89999999976 6
Q ss_pred cceeEEEEEEEEcCCCccccccceeccccccccccchhhheeeeEeeccCcc----cCCCCCCC-CcccccCCCCcccc
Q 038032 185 SYAFINGIEIVSMPLNLYYDLSFLFVGQEKRFMIETSNALESLYRINVGGSD----ISPLGDTG-MFRTWSADDAYLTD 258 (279)
Q Consensus 185 s~aFINgIEV~slp~~ly~~~~~~~~g~~~~~~~~~~~aLet~yRlNvGG~~----i~~~~Dt~-l~R~W~~D~~yl~~ 258 (279)
+.||||||||++||+++|.... + ...+.+||++||+||||++ +++++|+- +||+|.+|++|+.+
T Consensus 161 ~~pFIs~iEv~~l~~~~y~~~~----~------~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~ 229 (623)
T PLN03150 161 GDPAILSIEILQVDDKAYNFGP----S------WGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG 229 (623)
T ss_pred CCCceeEEEEEEcCcccccccc----c------ccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC
Confidence 7899999999999999994221 0 0135679999999999975 56777772 49999999999844
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=3.4e-37 Score=291.89 Aligned_cols=183 Identities=33% Similarity=0.535 Sum_probs=139.3
Q ss_pred EeeCCCCccc---C-CCCCeeeCCCCCCCcceeccCCCC---ccc-C--CCCCCcccceeeccC--CCcEEEEEec--CC
Q 038032 42 LACGSNGTFH---S-LEYRTWIGDISPGHSYYFQPKNDT---SRI-F--TTPQQPPYSAARLSH--SQFTYILNLT--AG 107 (279)
Q Consensus 42 InCG~~~~~~---d-~~gr~W~~D~~~~~~~~f~~~~~~---~~~-~--~~~~~~~Y~TAR~f~--~~~tY~fpv~--~G 107 (279)
||||++.+.+ | ..||+|++|.. |...+.. +.+ . .....++|+|||+|+ .+.||+||+. +|
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~------~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~ 74 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDD------FIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGG 74 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCC------cccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCC
Confidence 7999986643 3 35999999986 6654332 111 1 234568999999999 5689999997 33
Q ss_pred -cEEEEEEeeeccCCCC--CC--CCceEEEEECCEEEEeeecccccccccCCceEEEEEEEeec-CCCCeEEEEEEeCCC
Q 038032 108 -QKFIRLYFYSTSYPGF--DR--PKAFFSVKAGSFTLLSNFRASLTADALGEDSFFKEFCINVE-ESQRLLNITFKSSPD 181 (279)
Q Consensus 108 -~ylVRLhF~~~~y~~~--~~--~~~~FdV~i~~~~ll~~f~i~~~a~~~~~~~~~kEf~v~v~-~~~~~L~I~f~P~~~ 181 (279)
+|||||||++..|.+. .. ..+.|++++|... +..+++.. ....+++|||++++. + +.|.|||.|..+
T Consensus 75 ~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~-~~tV~~~~----~~~~~~~~E~ii~v~~~--~~l~vclv~~~~ 147 (347)
T PF12819_consen 75 GKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNF-WSTVNLSN----SPSSPVVKEFIINVTWS--DTLSVCLVPTGS 147 (347)
T ss_pred ceEEEEEEeccccccccccccccCCcceEEEECCce-eEEEEecC----CCcceEEEEEEEEEcCC--CcEEEEEEeCCC
Confidence 9999999996655532 11 2456888888754 55554432 113579999999998 5 899999999984
Q ss_pred CCCcceeEEEEEEEEcCCCccccccceeccccccccccchhhheeeeEeeccCcc--cCCCCCCCCcccccC
Q 038032 182 YKDSYAFINGIEIVSMPLNLYYDLSFLFVGQEKRFMIETSNALESLYRINVGGSD--ISPLGDTGMFRTWSA 251 (279)
Q Consensus 182 ~~~s~aFINgIEV~slp~~ly~~~~~~~~g~~~~~~~~~~~aLet~yRlNvGG~~--i~~~~Dt~l~R~W~~ 251 (279)
+.+||||||||++||+++|.+.. ...+.|||++||+||||+. |++++|+ +||+|.+
T Consensus 148 --g~~pFIsaiEl~~lp~~ly~~~~-----------~~~s~~L~~~~R~n~G~~~~~iryp~D~-~dR~W~~ 205 (347)
T PF12819_consen 148 --GTFPFISAIELRPLPDSLYPDTD-----------ANSSQALETVYRLNVGGSSSFIRYPDDT-YDRIWQP 205 (347)
T ss_pred --CCCCceeEEEEEECCccceeccc-----------cCCCceeEEEEeecCCCcccccCCCCCc-ceeeccc
Confidence 66799999999999999995321 1357899999999999998 9999999 9999983
No 3
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.88 E-value=7.2e-23 Score=176.66 Aligned_cols=150 Identities=21% Similarity=0.296 Sum_probs=94.4
Q ss_pred eEEEeeCCCCcccCCCCCeeeCCCCCCCcce-eccCCC-----Ccc---cCCCCCCcccceeeccCCCcEEEEE-ecCCc
Q 038032 39 SILLACGSNGTFHSLEYRTWIGDISPGHSYY-FQPKND-----TSR---IFTTPQQPPYSAARLSHSQFTYILN-LTAGQ 108 (279)
Q Consensus 39 ~~~InCG~~~~~~d~~gr~W~~D~~~~~~~~-f~~~~~-----~~~---~~~~~~~~~Y~TAR~f~~~~tY~fp-v~~G~ 108 (279)
.++|||||+.. +|..|+.|.+|....+..+ |..+.. ... ...+.++.+|+|+|.-+.+++|.+| +.+|.
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G~ 80 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDIPVVPNGT 80 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SSSEEEEEE--S-EE
T ss_pred EEEEECCCCcc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCCceEEEEecCCCcE
Confidence 48999999988 4889999999986221111 211100 000 1112345799999997678999999 55799
Q ss_pred EEEEEEeeeccCCC----CCCCCceEEEEECCEEEEeeecccccccccCCceEEEEE-EEeecCCCCeEEEEEEeCCCC-
Q 038032 109 KFIRLYFYSTSYPG----FDRPKAFFSVKAGSFTLLSNFRASLTADALGEDSFFKEF-CINVEESQRLLNITFKSSPDY- 182 (279)
Q Consensus 109 ylVRLhF~~~~y~~----~~~~~~~FdV~i~~~~ll~~f~i~~~a~~~~~~~~~kEf-~v~v~~~~~~L~I~f~P~~~~- 182 (279)
|.|||||+|+.+.. ...++|+|||++||.+++++||+..++++. ..+++++| -+.|++ +.|.|+|.+..+.
T Consensus 81 Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~-~~~~~~~~~~v~v~d--g~L~i~f~~~~~~~ 157 (174)
T PF11721_consen 81 YTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGF-NKAAVRRFFNVTVTD--GTLNIQFVWAGKGT 157 (174)
T ss_dssp EEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSS-S---EEEEEEEEEET--TEEETTEEEE--SE
T ss_pred EEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCC-ceEEEEEEEEEEEeC--CcEEEEEEecCCCc
Confidence 99999999998864 346789999999999999999999888754 34678888 678888 8999999942210
Q ss_pred -------CCcceeEEEE
Q 038032 183 -------KDSYAFINGI 192 (279)
Q Consensus 183 -------~~s~aFINgI 192 (279)
....|.||||
T Consensus 158 ~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 158 LCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEEEEESSSSSSSEEEE
T ss_pred EEeeccccCCCcEEeeC
Confidence 0234778876
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.88 E-value=3.4e-22 Score=202.46 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=115.4
Q ss_pred eEEEeeCCCCcc--cCC------CCCeeeCCCCCCCcceeccCCCC----------cccCC-CCCCcccceeeccCC---
Q 038032 39 SILLACGSNGTF--HSL------EYRTWIGDISPGHSYYFQPKNDT----------SRIFT-TPQQPPYSAARLSHS--- 96 (279)
Q Consensus 39 ~~~InCG~~~~~--~d~------~gr~W~~D~~~~~~~~f~~~~~~----------~~~~~-~~~~~~Y~TAR~f~~--- 96 (279)
.+|||||+.... .|. .+|.|.+|.. |..+... +...+ .+|+.+|+|||++..
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~------~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~ 266 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQT------FGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQP 266 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCcc------cCCCcccccccccccccccCCCccChHHHhhhhccccCCCC
Confidence 579999987532 122 2799999975 4322110 11112 256789999999875
Q ss_pred CcEEEEEecC-CcEEEEEEeeeccCCCCCCCCceEEEEECCEEEEeeecccccccccCCceEEEEEEEeecCCCCeEEEE
Q 038032 97 QFTYILNLTA-GQKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTLLSNFRASLTADALGEDSFFKEFCINVEESQRLLNIT 175 (279)
Q Consensus 97 ~~tY~fpv~~-G~ylVRLhF~~~~y~~~~~~~~~FdV~i~~~~ll~~f~i~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~ 175 (279)
+.+|.|+|++ |.|+|||||||+.......+.|+|+|++||.+++++||+...++ ....++++||.+.+++ +.|+|+
T Consensus 267 ~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g-~~~~~~~~~~~v~~~~--g~l~is 343 (623)
T PLN03150 267 DLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSG-ERYTALVLNKTVAVSG--RTLTIV 343 (623)
T ss_pred ceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcC-CcccceEEEeEEeecC--CeEEEE
Confidence 5799999987 69999999999975444557899999999999999999876554 2357899999999987 899999
Q ss_pred EEeCCCCCCcceeEEEEEEEEcCC
Q 038032 176 FKSSPDYKDSYAFINGIEIVSMPL 199 (279)
Q Consensus 176 f~P~~~~~~s~aFINgIEV~slp~ 199 (279)
|.|.. ++.||||||||+++..
T Consensus 344 l~p~~---~s~pilNaiEI~~~~~ 364 (623)
T PLN03150 344 LQPKK---GTHAIINAIEVFEIIT 364 (623)
T ss_pred EeeCC---CCcceeeeeeeeeccc
Confidence 99987 6679999999999875
No 5
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.76 E-value=5.9e-18 Score=160.59 Aligned_cols=157 Identities=17% Similarity=0.253 Sum_probs=107.6
Q ss_pred CCceEEEeeCCCC--cc--cCCCCCeeeCCCCCCCcceeccCCCCc-c--cCC-CCCCcccceeeccCC-----CcEEEE
Q 038032 36 AVDSILLACGSNG--TF--HSLEYRTWIGDISPGHSYYFQPKNDTS-R--IFT-TPQQPPYSAARLSHS-----QFTYIL 102 (279)
Q Consensus 36 p~~~~~InCG~~~--~~--~d~~gr~W~~D~~~~~~~~f~~~~~~~-~--~~~-~~~~~~Y~TAR~f~~-----~~tY~f 102 (279)
....+|+|||++. .. .|..+|.|.+...........+..... . ... .+|..+|+|||.... +++|.|
T Consensus 177 L~~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~ 256 (347)
T PF12819_consen 177 LETVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF 256 (347)
T ss_pred eEEEEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc
Confidence 4468899999886 32 356799999632100000011000011 1 111 367889999999763 358989
Q ss_pred EecCC-cEEEEEEeeeccCCCCCCCCceEEEEECCEEEEeeecccccccccCCceEEEEEEEeecCCCCeEEEEEEeCCC
Q 038032 103 NLTAG-QKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTLLSNFRASLTADALGEDSFFKEFCINVEESQRLLNITFKSSPD 181 (279)
Q Consensus 103 pv~~G-~ylVRLhF~~~~y~~~~~~~~~FdV~i~~~~ll~~f~i~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~f~P~~~ 181 (279)
++++ .|+|||||||+.......+.|.|+|++||..+.++++... ......+++++|++.++++ +.+.|+|.|...
T Consensus 257 -~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~-~~~~isL~~t~~ 332 (347)
T PF12819_consen 257 -VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY--LGADTVPYYSDYVVNVPDS-GFLNISLGPTPD 332 (347)
T ss_pred -CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc--ccCcceEeecceEEEecCC-CEEEEEEEeCCC
Confidence 8887 9999999999987543455799999999998776555421 1123567899999998764 589999999873
Q ss_pred CCCcceeEEEEEEEEc
Q 038032 182 YKDSYAFINGIEIVSM 197 (279)
Q Consensus 182 ~~~s~aFINgIEV~sl 197 (279)
+ .-.|+|||+||++|
T Consensus 333 S-~lppiLNalEIy~v 347 (347)
T PF12819_consen 333 S-TLPPILNALEIYKV 347 (347)
T ss_pred C-CcCceeEeeeeEeC
Confidence 2 12599999999986
No 6
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.13 E-value=0.0004 Score=64.30 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=77.1
Q ss_pred ceEEEeeCCCCcccCCCCCeeeCCCCCC-Ccc-eeccCCCCcccCCCCCCcccceeeccCCCcEEEEEecC-CcEEEEEE
Q 038032 38 DSILLACGSNGTFHSLEYRTWIGDISPG-HSY-YFQPKNDTSRIFTTPQQPPYSAARLSHSQFTYILNLTA-GQKFIRLY 114 (279)
Q Consensus 38 ~~~~InCG~~~~~~d~~gr~W~~D~~~~-~~~-~f~~~~~~~~~~~~~~~~~Y~TAR~f~~~~tY~fpv~~-G~ylVRLh 114 (279)
-.+.|||||..-+ |..|.+|..|...+ |-+ .|-..-...-...-.+..+|+|+|+-...|.|..|++. |.|-+=|-
T Consensus 60 vI~aVncGgdaav-d~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~neetFgyd~pik~dgdyalvlk 138 (355)
T KOG3593|consen 60 VIPAVNCGGDAAV-DNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEETFGYDVPIKEDGDYALVLK 138 (355)
T ss_pred hhheeccCChhhh-cccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchhhhcccccccCCCceehhhh
Confidence 3467999998876 88899999886411 100 01000000000001234799999997667899999985 99999999
Q ss_pred eeeccCCCCCCCCceEEEEEC-CEEEEeeeccccccc
Q 038032 115 FYSTSYPGFDRPKAFFSVKAG-SFTLLSNFRASLTAD 150 (279)
Q Consensus 115 F~~~~y~~~~~~~~~FdV~i~-~~~ll~~f~i~~~a~ 150 (279)
|++..+.. ...-+|+|.+| +..++++.++...++
T Consensus 139 faevyF~~--~q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 139 FAEVYFKT--CQHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred HHHHHHHh--hhhhheeeeeccceeEEeccchhhhcC
Confidence 99987652 45689999999 899999999987766
No 7
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=32.63 E-value=2.8e+02 Score=22.72 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=44.4
Q ss_pred CcEEEEEEeeeccCCCCCCCCceEEEEECCEEEEeeecccccccc---c---CCceEEEEEE--EeecCCC-CeEEEEEE
Q 038032 107 GQKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTLLSNFRASLTADA---L---GEDSFFKEFC--INVEESQ-RLLNITFK 177 (279)
Q Consensus 107 G~ylVRLhF~~~~y~~~~~~~~~FdV~i~~~~ll~~f~i~~~a~~---~---~~~~~~kEf~--v~v~~~~-~~L~I~f~ 177 (279)
.+|-||+.++- ..+..+.+.+++.....++++..+... . -...-+.|+. +.....+ ..+.|.+.
T Consensus 52 ~~YrIRiRYAs-------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i~i~ 124 (143)
T PF03944_consen 52 QKYRIRIRYAS-------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITISIQ 124 (143)
T ss_dssp EEEEEEEEEEE-------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEEEEE
T ss_pred ceEEEEEEEEE-------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEEEEE
Confidence 59999999882 234577888877553214444333221 1 1234566765 2334411 13555555
Q ss_pred eCCCCCCcceeEEEEEEEEcC
Q 038032 178 SSPDYKDSYAFINGIEIVSMP 198 (279)
Q Consensus 178 P~~~~~~s~aFINgIEV~slp 198 (279)
... .++.=+|--||.+++.
T Consensus 125 ~~~--~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 125 NIS--SNGNVYIDKIEFIPVN 143 (143)
T ss_dssp SST--TTS-EEEEEEEEEECT
T ss_pred ecC--CCCeEEEEeEEEEeCC
Confidence 333 1255699999999863
No 8
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=30.39 E-value=2.6e+02 Score=21.63 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=30.0
Q ss_pred cEEE-EEecC-CcEEEEEEeeeccCCCCCCCCceEEEEECC--EEEEeeecccc
Q 038032 98 FTYI-LNLTA-GQKFIRLYFYSTSYPGFDRPKAFFSVKAGS--FTLLSNFRASL 147 (279)
Q Consensus 98 ~tY~-fpv~~-G~ylVRLhF~~~~y~~~~~~~~~FdV~i~~--~~ll~~f~i~~ 147 (279)
.+|+ ..+.. |.|.|++...- . ...+.+.|.+++ -.++..+++..
T Consensus 34 ~~~~~Vd~~~~g~y~~~~~~a~---~---~~~~~~~l~id~~~g~~~~~~~~~~ 81 (125)
T PF03422_consen 34 IEYNNVDVPEAGTYTLTIRYAN---G---GGGGTIELRIDGPDGTLIGTVSLPP 81 (125)
T ss_dssp EEEEEEEESSSEEEEEEEEEEE---S---SSSEEEEEEETTTTSEEEEEEEEE-
T ss_pred EEEEEEeeCCCceEEEEEEEEC---C---CCCcEEEEEECCCCCcEEEEEEEcC
Confidence 4777 77764 79999988762 1 122789999998 34466677643
No 9
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.45 E-value=3.5e+02 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=22.2
Q ss_pred EEEEecCC-cEEEEEEeeeccCCCCCCCCceEEEEECCEEE
Q 038032 100 YILNLTAG-QKFIRLYFYSTSYPGFDRPKAFFSVKAGSFTL 139 (279)
Q Consensus 100 Y~fpv~~G-~ylVRLhF~~~~y~~~~~~~~~FdV~i~~~~l 139 (279)
+.|.|.|| .|++|+.=. .+....| ..|+++.+
T Consensus 209 ~~l~v~pGktY~lRiiN~-------g~~~~l~-F~I~~H~l 241 (563)
T KOG1263|consen 209 PTLTVEPGKTYRLRIINA-------GLNTSLN-FSIANHQL 241 (563)
T ss_pred eEEEEcCCCEEEEEEEcc-------ccccceE-EEECCeEE
Confidence 68899999 999998733 1333444 67888663
No 10
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=22.96 E-value=6e+02 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=22.4
Q ss_pred EEEEEecCCcEEEEEEeeeccCCCCCCCCceEEEEECCEE
Q 038032 99 TYILNLTAGQKFIRLYFYSTSYPGFDRPKAFFSVKAGSFT 138 (279)
Q Consensus 99 tY~fpv~~G~ylVRLhF~~~~y~~~~~~~~~FdV~i~~~~ 138 (279)
.+++.+.+|. .+||.|.- . .+.+.|.|.|.|..
T Consensus 259 ~~~~~v~~G~-rvRLR~IN---a---s~~~~f~l~I~gh~ 291 (587)
T TIGR01480 259 NWTGLFRPGE-KVRLRFIN---G---SAMTYFDVRIPGLK 291 (587)
T ss_pred CceEEECCCC-EEEEEEEe---c---CCCceEEEEECCCE
Confidence 3557778885 67777772 1 23478999998854
No 11
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=21.05 E-value=90 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=15.8
Q ss_pred cEEEEEecCCcEEEEEEe
Q 038032 98 FTYILNLTAGQKFIRLYF 115 (279)
Q Consensus 98 ~tY~fpv~~G~ylVRLhF 115 (279)
-.|+|.+.||.|.|.|.-
T Consensus 47 G~Ys~~~epG~Y~V~l~~ 64 (134)
T PF08400_consen 47 GEYSFDVEPGVYRVTLKV 64 (134)
T ss_pred ceEEEEecCCeEEEEEEE
Confidence 489999999999998864
Done!