Query 038033
Match_columns 465
No_of_seqs 123 out of 599
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1172 Na+-independent Cl/HCO 100.0 2E-112 4E-117 924.9 16.8 397 1-461 329-867 (876)
2 TIGR00834 ae anion exchange pr 100.0 5E-111 1E-115 932.5 17.0 391 1-453 338-882 (900)
3 PF00955 HCO3_cotransp: HCO3- 100.0 2.3E-97 5E-102 787.6 -1.4 335 1-399 2-510 (510)
4 PF00916 Sulfate_transp: Sulfa 89.1 0.3 6.6E-06 48.3 2.9 50 190-242 147-197 (280)
5 TIGR00815 sulP high affinity s 69.5 4.8 0.00011 44.5 3.9 50 190-242 259-309 (563)
6 PRK11660 putative transporter; 56.0 5.5 0.00012 44.1 1.3 50 190-242 279-329 (568)
7 COG0659 SUL1 Sulfate permease 55.7 7 0.00015 43.5 2.0 50 190-242 248-298 (554)
8 PF12075 KN_motif: KN motif; 44.1 9.6 0.00021 27.7 0.5 19 218-236 2-20 (39)
9 PF13633 N_methyl_3: Prokaryot 21.2 62 0.0013 20.8 1.3 16 396-411 1-16 (22)
10 PRK14751 tetracycline resistan 20.8 33 0.00071 22.8 0.0 11 223-233 15-25 (28)
No 1
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-112 Score=924.87 Aligned_cols=397 Identities=34% Similarity=0.543 Sum_probs=344.6
Q ss_pred CCCCCCCcchhhhhhhhcccceeccccccccCcch---------------------------------------------
Q 038033 1 MSQAKTPFQGMIKDFKVRAACYKQDWIGIRCTGLR--------------------------------------------- 35 (465)
Q Consensus 1 ~~~~~~~f~G~~~Dik~R~p~Y~sD~~d~~~~~~~--------------------------------------------- 35 (465)
.+||+|+|||+++|+|||+|||+|||+||+|+||+
T Consensus 329 ~~~tgrlFgGl~~DikrR~p~Y~SD~~Da~~~~~la~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~Giif 408 (876)
T KOG1172|consen 329 LQRTGRLFGGLVLDIKRRLPHYKSDFRDAFNIQCLAATLFIYFACLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIF 408 (876)
T ss_pred cccccccchhHHHHHHhhcCCChHHHHHHhccccchHHHHHHHHhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999996
Q ss_pred -----------------------------------------hHHHHHHHHHHHHHhhcccchhhhccchhhHHHHHHHHH
Q 038033 36 -----------------------------------------VCVWMAILLFLLAIFNACNVINRFIRMAEELFGLLIAVL 74 (465)
Q Consensus 36 -----------------------------------------vgiW~ai~~~lla~~nas~l~~yiTRFTeEiF~~lIsvi 74 (465)
||+|++++|+++|++|+|.+|+|+||||||+||+|||+|
T Consensus 409 slfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~i 488 (876)
T KOG1172|consen 409 SLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLDYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLI 488 (876)
T ss_pred HHhcCCceEEEecCccHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred Hhhhc--ccceeccccCCCCC------------c-----cc----cchh---hhhhhhhcc--------cccccccccCc
Q 038033 75 FIQEA--GVVSEFRIAEAEDP------------K-----LE----KCKY---NFEWLYANG--------RQARSWRYGTG 120 (465)
Q Consensus 75 Fi~ea--~l~~~f~~~~~~~~------------~-----~~----~~~~---~~~~~~~~g--------~~~r~s~y~~~ 120 (465)
||||| +++++|+....+.. . .. .|.. ..+..+..| |+||+|+||++
T Consensus 489 Fi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~ 568 (876)
T KOG1172|consen 489 FIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPR 568 (876)
T ss_pred HHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 99999 67777765322211 0 00 1211 112222222 99999999999
Q ss_pred ccchhhcccccccccCC------CCCCCCCCCccCCCCCCCCC--CCCcEEEecccccccccccceeeeeeccccchhhh
Q 038033 121 CFRSFLADYGIPLSIPG------KPPSDIPRRLFCPPPWDSAS--LYYWTVIVYMSRWDSLLKIFIVQVFRYTILEELIP 192 (465)
Q Consensus 121 ~vR~~isDyg~~Isv~~------~vp~~~~~~l~~p~~~~p~~--~r~W~v~~~~~~~~~~~~lp~~~i~~~~~~~~~~A 192 (465)
|+|+++||||+|+++.. .+++..++|+.+|..+.|+. +|+|+| ++++ ++|+|++ ++|
T Consensus 569 ~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~vp~~~~~t~~~~rgw~v-~~~~------~~P~~~~--------~~A 633 (876)
T KOG1172|consen 569 KVRSLISDFGVPLSILVFSLIDYFGGSVETPKLPVPSVFPPTWPFDRGWFV-PPFG------KNPWWYV--------FAA 633 (876)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccccCCCccccCcCCCCCCcccCCeee-CCCC------CCCHHHH--------HHH
Confidence 99999999999998742 24443455666666555542 289996 5666 8999999 999
Q ss_pred hhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhhhhhhhhhhhccCcchhhhhccccceeccc
Q 038033 193 IIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKMVKSAKECIKQHESNSEIYGRMQAVFTKID 271 (465)
Q Consensus 193 i~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~v~t~~~~i~~~~~~~~~~g~~~~~~p~~~ 271 (465)
++||++++|||||||| ||+|||+||||||||+||||||+++|++|++|| ++|+
T Consensus 634 ~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~ics-----------------llGL--------- 687 (876)
T KOG1172|consen 634 LIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICS-----------------LLGL--------- 687 (876)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHH-----------------hcCC---------
Confidence 9999999999999999 999999999999999999999999999999875 4455
Q ss_pred CCCCCCCCCCCCcchhhhhhhHHhhhccCCCCCccccccccccccccccceeeeeeecccccccc-------------cc
Q 038033 272 TSPTRSDLIQPSSVPKEMEDLKEFVMKADDGGDAIEKFDLKKHIDACLPVRINEQRVSNTLQSLL-------------IP 338 (465)
Q Consensus 272 ~p~~~~~ipqsp~H~~aL~~~~~~v~~~~~~~G~~~~~~~~~~i~~~v~v~V~EQRvS~ll~~lL-------------IP 338 (465)
||.+|++||||+|++||+. +++.++|||+++ +++|+||||||++|++| ||
T Consensus 688 -Pw~~~a~p~S~~H~~SL~v-----~~~~~apge~~~-----------i~~V~EQRvtgll~~llvgls~~~~pvL~~IP 750 (876)
T KOG1172|consen 688 -PWSNAATVQSPMHTKSLAV-----ESETSAPGEQPQ-----------IVGVREQRVTGLLQFLLVGLSVLLLPVLKLIP 750 (876)
T ss_pred -CccccccccCHHHHHHHHH-----hhcccCCCCccc-----------cccchhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5567888999999999964 345677888654 48999999999999988 99
Q ss_pred chhhhhhhhhhhcccCCCchHHHHHHHhhcCCCCCCCCCCCCCCccccccCcchhhhHHHHHHHHhHhhhhhccchhhhh
Q 038033 339 NSVLWGYFAYWAFDNVPGNQFWERLLLLFITPRRSCNPWRGVHASFVGLVPYMIIGLFTVFQLVYFLFCFGIAWTPIAGV 418 (465)
Q Consensus 339 ~~VL~GlFlyMG~~sL~Gnq~~~Ri~llf~~~~~~~~~~~~p~~~yvr~Vp~~~ihlFT~iQ~~~~~~~~~i~~~~~aai 418 (465)
+|||||+|+|||++||+|||||||++|+|||+|++ |+.+|+|+||.|+||+||++|++|+++||+|+|.+.|+|
T Consensus 751 ~~VL~GvFlYMgv~SL~Gnqf~eRl~Llf~p~k~~------p~~~ylrhv~~r~vhlFT~~Ql~~l~ll~~i~~~~~asi 824 (876)
T KOG1172|consen 751 MPVLYGVFLYMGVSSLPGNQFFERLLLLFMPPKHR------PDTLYLRHVPFRRVHLFTLIQLLCLALLWAIKWSPVASI 824 (876)
T ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHcCCcccC------CCccceeecchhhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 99999999999999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhcCCcCChhhhhhcccchhhhhHHhhhc
Q 038033 419 LFPLPFFFLISIRQYILPKIFHPDHLQELNASEYEEIALMRAR 461 (465)
Q Consensus 419 ~FP~ii~~LvpiR~~llpr~F~~~eL~~LD~~~~e~~~~~~~~ 461 (465)
+||++++++||+|+++|||+|+++||++||++|+++++..++.
T Consensus 825 ~FP~~ll~lVpiR~~~lp~~f~~~eL~~LD~~~~~~~~~~~~~ 867 (876)
T KOG1172|consen 825 IFPLMLLLLVPIRQYLLPRLFKPRELQALDANEYEPEPDKPKG 867 (876)
T ss_pred HHHHHHHHHHHHHHHhHHhhcCHHhhhhhchhhcccccccccc
Confidence 9999999999999999999999999999999999987776644
No 2
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=100.00 E-value=4.5e-111 Score=932.45 Aligned_cols=391 Identities=23% Similarity=0.419 Sum_probs=340.1
Q ss_pred CCCCCCCcchhhhhhhhcccceeccccccccCcch---------------------------------------------
Q 038033 1 MSQAKTPFQGMIKDFKVRAACYKQDWIGIRCTGLR--------------------------------------------- 35 (465)
Q Consensus 1 ~~~~~~~f~G~~~Dik~R~p~Y~sD~~d~~~~~~~--------------------------------------------- 35 (465)
++||+++||||++|+|||+|||+|||+||||+||+
T Consensus 338 l~rtg~~f~Gli~DikRR~p~Y~SD~tDa~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giif 417 (900)
T TIGR00834 338 LQRTGRPFGGLIRDIKRRYPHYLSDFTDALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLF 417 (900)
T ss_pred hhhcCCccchHHHHHHhhcccchHHHhhhhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999998
Q ss_pred -----------------------------------------hHHHHHHHHHHHHHhhcccchhhhccchhhHHHHHHHHH
Q 038033 36 -----------------------------------------VCVWMAILLFLLAIFNACNVINRFIRMAEELFGLLIAVL 74 (465)
Q Consensus 36 -----------------------------------------vgiW~ai~~~lla~~nas~l~~yiTRFTeEiF~~lIsvi 74 (465)
||+|+++||+++|++|+|++|||+|||||||||+|||+|
T Consensus 418 slf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~I 497 (900)
T TIGR00834 418 ALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLI 497 (900)
T ss_pred hhhcCCceEEecCcccHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred Hhhhc--ccceeccccCC---C-----------CCc-----c------------ccch-----hhhhhhhhcc-------
Q 038033 75 FIQEA--GVVSEFRIAEA---E-----------DPK-----L------------EKCK-----YNFEWLYANG------- 109 (465)
Q Consensus 75 Fi~ea--~l~~~f~~~~~---~-----------~~~-----~------------~~~~-----~~~~~~~~~g------- 109 (465)
||||| +++++|+.++. + |.+ . ..|. ...+..++.|
T Consensus 498 FI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~ 577 (900)
T TIGR00834 498 FIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMF 577 (900)
T ss_pred HHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999 88888875320 0 000 0 0132 1112222222
Q ss_pred -cccccccccCcccchhhcccccccccCC------CCCCCCCCCccCCCCCCCCCC--CCcEEEecccccccccccceee
Q 038033 110 -RQARSWRYGTGCFRSFLADYGIPLSIPG------KPPSDIPRRLFCPPPWDSASL--YYWTVIVYMSRWDSLLKIFIVQ 180 (465)
Q Consensus 110 -~~~r~s~y~~~~vR~~isDyg~~Isv~~------~vp~~~~~~l~~p~~~~p~~~--r~W~v~~~~~~~~~~~~lp~~~ 180 (465)
++||+|+||++++|+++||||+|||+.. .+.+...+|+.+|+.|.|++. |+|+| +|++ .+.++|+|+
T Consensus 578 L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~~kl~Vp~~f~pt~p~~R~W~i-~p~~---~~~~~p~w~ 653 (900)
T TIGR00834 578 LRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLKVTNPSARGWFI-PPLG---ENRPFPWWM 653 (900)
T ss_pred HHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCcccccCCCCCcCCCCCCCCCeEE-cccc---ccccccHHH
Confidence 9999999999999999999999999853 233344578999999999865 89995 6666 223459999
Q ss_pred eeeccccchhhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhhhhhhhhhhhccCcchhh
Q 038033 181 VFRYTILEELIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKMVKSAKECIKQHESNSEI 259 (465)
Q Consensus 181 i~~~~~~~~~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~v~t~~~~i~~~~~~~~~ 259 (465)
+ ++|++||+++++||||||| |++|+|+||||||||+||||||+++|++|++|| +
T Consensus 654 ~--------~~A~iPAlll~ILiFmD~nIts~iv~~~e~kLkKgsgyH~Dllllg~~~~v~s-----------------l 708 (900)
T TIGR00834 654 M--------FAAALPALLVFILIFMEQQITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAA-----------------L 708 (900)
T ss_pred H--------HHHHHHHHHHHHHHHHHhhhHHHHhcCccccCCCCcccchHHHHHHHHHHHHH-----------------h
Confidence 9 9999999999999999999 999999999999999999999999999999864 4
Q ss_pred hhccccceecccCCCCCCCCCCCCcchhhhhhhHHhhhccCCCCCccccccccccccccccceeeeeeecccccccc---
Q 038033 260 YGRMQAVFTKIDTSPTRSDLIQPSSVPKEMEDLKEFVMKADDGGDAIEKFDLKKHIDACLPVRINEQRVSNTLQSLL--- 336 (465)
Q Consensus 260 ~g~~~~~~p~~~~p~~~~~ipqsp~H~~aL~~~~~~v~~~~~~~G~~~~~~~~~~i~~~v~v~V~EQRvS~ll~~lL--- 336 (465)
+|+ ||.+|++||||+|++||+.+ ++++++||+++ +++|+||||||+++|+|
T Consensus 709 lGL----------Pw~~aatv~S~~Hv~sL~v~-----~~~~~~Ge~~~-----------i~~V~EQRvT~ll~~lLigl 762 (900)
T TIGR00834 709 FGL----------PWLSAATVRSVTHANALTVM-----SKASAPGEKAQ-----------IQEVREQRVTGLLVAVLVGL 762 (900)
T ss_pred cCC----------CcccccCCcChhhHhHHeee-----eeccCCCCCCc-----------cceeEeeehHHHHHHHHHHH
Confidence 555 55577889999999999643 45567887543 37999999999999988
Q ss_pred ----------ccchhhhhhhhhhhcccCCCchHHHHHHHhhcCCCCCCCCCCCCCCccccccCcchhhhHHHHHHHHhHh
Q 038033 337 ----------IPNSVLWGYFAYWAFDNVPGNQFWERLLLLFITPRRSCNPWRGVHASFVGLVPYMIIGLFTVFQLVYFLF 406 (465)
Q Consensus 337 ----------IP~~VL~GlFlyMG~~sL~Gnq~~~Ri~llf~~~~~~~~~~~~p~~~yvr~Vp~~~ihlFT~iQ~~~~~~ 406 (465)
||+|||||+|+|||++||+|||||+|++++|||+|++ ||.+|+|+||+||||+||++|++|+++
T Consensus 763 sv~~~PvL~~IP~aVL~GvFlYMGv~SL~GnQ~~~Ri~llf~p~k~~------P~~~ylr~Vp~~kihlFT~iQl~cl~~ 836 (900)
T TIGR00834 763 SILMEPILKRIPLAVLFGIFLYMGVTSLSGIQLFDRLLLLLMPPKYH------PDVPYVRRVKTWRMHLFTAIQILCLAL 836 (900)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccCHHHHHHHHHhcCcccC------CCchhhhcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999863 788999999999999999999999999
Q ss_pred hhhhccchhhhhhhhHHHHHHHHHhhhhcCCcCChhhhhhcccchhh
Q 038033 407 CFGIAWTPIAGVLFPLPFFFLISIRQYILPKIFHPDHLQELNASEYE 453 (465)
Q Consensus 407 ~~~i~~~~~aai~FP~ii~~LvpiR~~llpr~F~~~eL~~LD~~~~e 453 (465)
+|++++ +++||+||++|++|||+|++++||+|+++||++||++|++
T Consensus 837 l~~ik~-t~aai~FP~~iillVpiR~~llp~~F~~~eL~~LD~~d~~ 882 (900)
T TIGR00834 837 LWVVKS-TPASLAFPFVLILTVPLRRLLLPRLFTERELKCLDKEDAK 882 (900)
T ss_pred HHHHHH-HhHHHHhHHHHHHHHHHHHHHHhhcCCHHHHhhhCccccc
Confidence 999998 6799999999999999999999999999999999988765
No 3
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=100.00 E-value=2.3e-97 Score=787.65 Aligned_cols=335 Identities=30% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCCCCCCcchhhhhhhhcccceeccccccccCcch---------------------------------------------
Q 038033 1 MSQAKTPFQGMIKDFKVRAACYKQDWIGIRCTGLR--------------------------------------------- 35 (465)
Q Consensus 1 ~~~~~~~f~G~~~Dik~R~p~Y~sD~~d~~~~~~~--------------------------------------------- 35 (465)
++||+|+||||++|+|||+|||+|||+||+|.||+
T Consensus 2 l~rtg~~fgGl~~Dikrr~p~Y~SD~~D~~~~~~~~~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f 81 (510)
T PF00955_consen 2 LQRTGRLFGGLINDIKRRLPWYWSDFTDGLNLQCLAATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIF 81 (510)
T ss_dssp -------------------STTCHHHCCSS-SHHHHHHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHH
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999998
Q ss_pred -----------------------------------------hHHHHHHHHHHHHHhhcccchhhhccchhhHHHHHHHHH
Q 038033 36 -----------------------------------------VCVWMAILLFLLAIFNACNVINRFIRMAEELFGLLIAVL 74 (465)
Q Consensus 36 -----------------------------------------vgiW~ai~~~lla~~nas~l~~yiTRFTeEiF~~lIsvi 74 (465)
||+|++++|+++|++|+|++|||+||||||+|++|||+|
T Consensus 82 ~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~i 161 (510)
T PF00955_consen 82 SLFSGQPLTILGSTGPVLVFEKILYKFCKSYGLDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISII 161 (510)
T ss_dssp HHCC----------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999
Q ss_pred Hhhhc--ccceeccccCCCCCc------------------------------------cccchh----------------
Q 038033 75 FIQEA--GVVSEFRIAEAEDPK------------------------------------LEKCKY---------------- 100 (465)
Q Consensus 75 Fi~ea--~l~~~f~~~~~~~~~------------------------------------~~~~~~---------------- 100 (465)
||+|| +++++|+..+.++.. ...|..
T Consensus 162 Fi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~ 241 (510)
T PF00955_consen 162 FIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQY 241 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 99999 788877642110000 000110
Q ss_pred -----hhhhhhhcc--------cccccccccCcccchhhcccccccccCCCCCC-----CCCCCccCCCCCCCCCC--CC
Q 038033 101 -----NFEWLYANG--------RQARSWRYGTGCFRSFLADYGIPLSIPGKPPS-----DIPRRLFCPPPWDSASL--YY 160 (465)
Q Consensus 101 -----~~~~~~~~g--------~~~r~s~y~~~~vR~~isDyg~~Isv~~~vp~-----~~~~~l~~p~~~~p~~~--r~ 160 (465)
..+..++.| +++|+|+||++++|+++||||+|||+..+.-. ...+|+.+|+.|+|+.. |+
T Consensus 242 ~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL~vp~~f~pt~~~~r~ 321 (510)
T PF00955_consen 242 QPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGVDTPKLNVPSSFKPTSPGKRG 321 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCC
Confidence 011111112 99999999999999999999999998642111 23478899999998755 89
Q ss_pred cEEEecccccccccccceeeeeeccccchhhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhh
Q 038033 161 WTVIVYMSRWDSLLKIFIVQVFRYTILEELIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTW 239 (465)
Q Consensus 161 W~v~~~~~~~~~~~~lp~~~i~~~~~~~~~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~ 239 (465)
|++ +|++ ++|+|.+ ++|++||+++++||||||| |++|+|+||||||||+||||||+++|++|++
T Consensus 322 W~v-~p~~------~~p~w~~--------~aA~~palll~iL~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v 386 (510)
T PF00955_consen 322 WFV-NPFG------SLPWWAI--------FAAIIPALLLTILFFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLV 386 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eec-Cccc------CCCHHHH--------HHHHHHHHHHHHHHHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHH
Confidence 985 6776 9999999 9999999999999999999 9999999999999999999999999999998
Q ss_pred hhhhhhhhhhhhccCcchhhhhccccceecccCCCCCCCCCCCCcchhhhhhhHHhhhccCCCCCccccccccccccccc
Q 038033 240 EKMVKSAKECIKQHESNSEIYGRMQAVFTKIDTSPTRSDLIQPSSVPKEMEDLKEFVMKADDGGDAIEKFDLKKHIDACL 319 (465)
Q Consensus 240 ~~~v~t~~~~i~~~~~~~~~~g~~~~~~p~~~~p~~~~~ipqsp~H~~aL~~~~~~v~~~~~~~G~~~~~~~~~~i~~~v 319 (465)
|+ ++|+ || .++++||||+|++||+..+ ++++|||+++
T Consensus 387 ~s-----------------llGL-----Pw-----~~aa~~~S~~Hv~sL~~~~-----~~~~pGe~~~----------- 423 (510)
T PF00955_consen 387 CS-----------------LLGL-----PW-----MNAATPQSPMHVRSLAVES-----ETSAPGEKPK----------- 423 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-----------------HcCC-----CC-----cccCccCCHHHhCcccEEe-----ccccCCCCCe-----------
Confidence 64 4555 55 5667889999999997543 4567898653
Q ss_pred cceeeeeeecccccccc-------------ccchhhhhhhhhhhcccCCCchHHHHHHHhhcCCCCCCCCCCCCCCcccc
Q 038033 320 PVRINEQRVSNTLQSLL-------------IPNSVLWGYFAYWAFDNVPGNQFWERLLLLFITPRRSCNPWRGVHASFVG 386 (465)
Q Consensus 320 ~v~V~EQRvS~ll~~lL-------------IP~~VL~GlFlyMG~~sL~Gnq~~~Ri~llf~~~~~~~~~~~~p~~~yvr 386 (465)
+++|+||||||+++|+| ||+|||+|+|+|||++||+||||+||++++|||+|+ +||.+|+|
T Consensus 424 i~~V~EqRvT~l~~~~Ligls~~l~pvL~~IP~~VL~GvFlymG~~sL~gnq~~~Ri~ll~~~~k~------~P~~~ylr 497 (510)
T PF00955_consen 424 IVGVREQRVTGLLVHLLIGLSLFLLPVLKLIPMPVLYGVFLYMGVTSLSGNQFFERILLLFMPPKH------YPDTHYLR 497 (510)
T ss_dssp -----------------------------------------------------TTTT------SS---------------
T ss_pred eCeEEEecccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhheeeeecCccHHHHHHHHccCccc------ccCCHHHC
Confidence 37999999999999998 999999999999999999999999999999999886 37889999
Q ss_pred ccCcchhhhHHHH
Q 038033 387 LVPYMIIGLFTVF 399 (465)
Q Consensus 387 ~Vp~~~ihlFT~i 399 (465)
+||+||||+||++
T Consensus 498 ~Vp~~~ihlfT~I 510 (510)
T PF00955_consen 498 RVPQRKIHLFTLI 510 (510)
T ss_dssp TTHHHHHT-----
T ss_pred cCCCCeEEEEEeC
Confidence 9999999999985
No 4
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=89.07 E-value=0.3 Score=48.32 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=37.9
Q ss_pred hhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhh
Q 038033 190 LIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKM 242 (465)
Q Consensus 190 ~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~ 242 (465)
...+..|+.++++-++|+- ++....++ -++..-.+-++.-+|+.|+++++
T Consensus 147 ~~~~~~a~~ia~v~~~~s~~~~~~~~~~---~~~~~d~n~El~a~G~aNi~s~~ 197 (280)
T PF00916_consen 147 LDLLPTALAIAIVGFIESLLIAKSIAKK---TGYRIDPNQELIALGLANIVSGL 197 (280)
T ss_pred cccchhHHHHHHHHHHHHHHhhhhhccc---ccccCCcHHHHHHhhhccccchh
Confidence 4455668999999999998 66655443 34556788999999999998654
No 5
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=69.49 E-value=4.8 Score=44.51 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=36.6
Q ss_pred hhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhh
Q 038033 190 LIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKM 242 (465)
Q Consensus 190 ~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~ 242 (465)
...++.|+.++++-|+|+- ++....++. ++..-.+-++...|+.|+.+++
T Consensus 259 ~~l~~~a~~ia~v~~~e~l~~a~~~~~~~---~~~~d~n~El~a~G~~N~~~~~ 309 (563)
T TIGR00815 259 PTLAPDAIAIAIVGLIESIAIARSFARMT---GYKIDANQELVAQGIANIVGSF 309 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcHHHHHhhHHHHHHHH
Confidence 4455669999999999999 766554432 2335667889999999987543
No 6
>PRK11660 putative transporter; Provisional
Probab=55.97 E-value=5.5 Score=44.14 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=34.2
Q ss_pred hhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhh
Q 038033 190 LIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKM 242 (465)
Q Consensus 190 ~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~ 242 (465)
..-+..|+.++++-|+|.- ++.-..++. +|..-.+-+|.-.|+.|+.+++
T Consensus 279 ~~ll~~a~~iaiv~~iesl~~~~~~~~~~---~~~~d~n~EL~a~G~aNi~~~~ 329 (568)
T PRK11660 279 RALLPAAFSMAMLGAIESLLCAVVLDGMT---GTKHSANSELVGQGLGNIVAPF 329 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcHHHHHHhHHHHHHHH
Confidence 3344558888888899887 555443332 2334578899999999987643
No 7
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=55.67 E-value=7 Score=43.49 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=37.4
Q ss_pred hhhhhHHHHHhhheeeccc-chhcccccccCCCCCCcccchhhhHhhhhhhhhh
Q 038033 190 LIPIIPALMIAGLYFFNQC-TSQMAQQKEFNLRNPSTYHYDILLLGIKQTWEKM 242 (465)
Q Consensus 190 ~~Ai~pAllltiL~F~D~n-ss~ivn~~e~kLkKg~gyH~Dl~llGi~~~~~~~ 242 (465)
..-++.|+.++++-++|+= |+....+..+. ..--+-+|.-.|+.|+.+++
T Consensus 248 ~~l~~~al~la~lg~iesllta~~~~~~~~~---~~d~nrELiaqGiaNi~sgl 298 (554)
T COG0659 248 LALLPYALALALLGLLESLLTAVSFDGMTGT---KHDSNRELIAQGIANIASGL 298 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHhhHHHHHHHH
Confidence 4455569999999999999 88887655433 33345689999999987543
No 8
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=44.12 E-value=9.6 Score=27.71 Aligned_cols=19 Identities=21% Similarity=0.530 Sum_probs=13.4
Q ss_pred cCCCCCCcccchhhhHhhh
Q 038033 218 FNLRNPSTYHYDILLLGIK 236 (465)
Q Consensus 218 ~kLkKg~gyH~Dl~llGi~ 236 (465)
+.++-|-|||+||=-|-.+
T Consensus 2 ysv~tPYGyhiDLDFvkyv 20 (39)
T PF12075_consen 2 YSVETPYGYHIDLDFVKYV 20 (39)
T ss_pred ccccCCcceeecchHHHHH
Confidence 3466799999998555433
No 9
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=21.21 E-value=62 Score=20.82 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=11.4
Q ss_pred HHHHHHHHhHhhhhhc
Q 038033 396 FTVFQLVYFLFCFGIA 411 (465)
Q Consensus 396 FT~iQ~~~~~~~~~i~ 411 (465)
||++++......+++.
T Consensus 1 FTLIEvlIa~~i~~i~ 16 (22)
T PF13633_consen 1 FTLIEVLIAIAILGIL 16 (22)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7899998666665554
No 10
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=20.83 E-value=33 Score=22.85 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=8.2
Q ss_pred CCcccchhhhH
Q 038033 223 PSTYHYDILLL 233 (465)
Q Consensus 223 g~gyH~Dl~ll 233 (465)
.+-||||++-+
T Consensus 15 ksi~hwdf~~l 25 (28)
T PRK14751 15 KSIYHWDFYAL 25 (28)
T ss_pred Cceeeeeehhh
Confidence 46799998643
Done!