Query 038033
Match_columns 465
No_of_seqs 123 out of 599
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh7_A BAND 3; membrane protei 98.8 4.5E-10 1.5E-14 76.9 -1.2 33 357-395 1-33 (33)
2 1bzk_A Protein (BAND 3 anion t 98.1 2.4E-07 8.1E-12 67.1 -0.5 19 17-35 1-19 (43)
3 1bnx_A Protein (BAND 3); human 97.0 0.00016 5.6E-09 49.7 0.7 12 17-28 1-12 (34)
4 3sok_A Fimbrial protein; pilus 14.3 66 0.0023 28.0 1.7 26 396-425 1-26 (151)
5 1oqw_A Fimbrial protein; type 13.8 70 0.0024 27.4 1.7 24 396-423 1-24 (144)
6 2hi2_A Fimbrial protein; type 12.1 71 0.0024 27.6 1.2 25 396-424 1-25 (158)
7 3din_D Preprotein translocase 9.8 1.4E+02 0.0049 22.5 2.1 48 1-52 1-49 (65)
8 3dl8_C SECE; RECA-type ATPase 8.8 1.5E+02 0.0052 22.4 1.8 49 1-52 1-49 (65)
9 2hg6_A Hypothetical protein; s 8.5 39 0.0013 28.7 -1.7 15 57-71 49-63 (128)
10 2l1s_A Uncharacterized protein 6.8 81 0.0028 25.4 -0.6 28 212-239 37-70 (83)
No 1
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.77 E-value=4.5e-10 Score=76.86 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.2
Q ss_pred chHHHHHHHhhcCCCCCCCCCCCCCCccccccCcchhhh
Q 038033 357 NQFWERLLLLFITPRRSCNPWRGVHASFVGLVPYMIIGL 395 (465)
Q Consensus 357 nq~~~Ri~llf~~~~~~~~~~~~p~~~yvr~Vp~~~ihl 395 (465)
+|||||++|+|||+|+ +||.+|+|+||+||||+
T Consensus 1 iQ~~~Ri~L~fmp~k~------~P~~~Yvr~Vp~~r~Hl 33 (33)
T 1bh7_A 1 IQLFDRILLLFKPPKY------HPDVPYVKRVKTWRMHL 33 (33)
T ss_dssp CCCTTTTCC-CCCSSC------CCC-CCCCTTHHHHHTC
T ss_pred CcHHHHHHHHcCCccc------CCCCceEEEcceeeeeC
Confidence 5999999999999986 37899999999999995
No 2
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=98.14 E-value=2.4e-07 Score=67.12 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=17.2
Q ss_pred hcccceeccccccccCcch
Q 038033 17 VRAACYKQDWIGIRCTGLR 35 (465)
Q Consensus 17 ~R~p~Y~sD~~d~~~~~~~ 35 (465)
||+|||+|||+||+|+||+
T Consensus 1 rR~p~Y~SD~~dg~~~~~l 19 (43)
T 1bzk_A 1 XRYPYYLSDITDAFSPQVL 19 (43)
T ss_dssp -CCSTTHHHHTTSSCSHHH
T ss_pred CCCcccHHHHHHHhhhhHH
Confidence 7999999999999999887
No 3
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=96.97 E-value=0.00016 Score=49.69 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=10.9
Q ss_pred hcccceeccccc
Q 038033 17 VRAACYKQDWIG 28 (465)
Q Consensus 17 ~R~p~Y~sD~~d 28 (465)
||+|||+|||+|
T Consensus 1 rR~p~Y~SD~~d 12 (34)
T 1bnx_A 1 XRYPYYLSDITD 12 (34)
T ss_dssp -CCSTTTHHHHH
T ss_pred CCCcccHHHHHH
Confidence 799999999999
No 4
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=14.31 E-value=66 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHhHhhhhhccchhhhhhhhHHHH
Q 038033 396 FTVFQLVYFLFCFGIAWTPIAGVLFPLPFF 425 (465)
Q Consensus 396 FT~iQ~~~~~~~~~i~~~~~aai~FP~ii~ 425 (465)
||++|++..+++.||. ++++.|-+.-
T Consensus 1 FTLiEllvviaIigiL----aaia~p~~~~ 26 (151)
T 3sok_A 1 FTLIELMIVVAIIGIL----AAFAIPAYND 26 (151)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999888877776 5666776543
No 5
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=13.81 E-value=70 Score=27.37 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.2
Q ss_pred HHHHHHHHhHhhhhhccchhhhhhhhHH
Q 038033 396 FTVFQLVYFLFCFGIAWTPIAGVLFPLP 423 (465)
Q Consensus 396 FT~iQ~~~~~~~~~i~~~~~aai~FP~i 423 (465)
||++|++..+++.||. ++++.|-+
T Consensus 1 FTLiEllivi~Ii~il----~~ia~p~~ 24 (144)
T 1oqw_A 1 FTLIELMIVVAIIGIL----AAIAIPQY 24 (144)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHH
Confidence 8999999877777776 55667754
No 6
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=12.13 E-value=71 Score=27.63 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.8
Q ss_pred HHHHHHHHhHhhhhhccchhhhhhhhHHH
Q 038033 396 FTVFQLVYFLFCFGIAWTPIAGVLFPLPF 424 (465)
Q Consensus 396 FT~iQ~~~~~~~~~i~~~~~aai~FP~ii 424 (465)
||++|++..+++.||. ++++.|.+-
T Consensus 1 fTLiEl~vvi~ii~il----~~~~~p~~~ 25 (158)
T 2hi2_A 1 XTLIELMIVIAIVGIL----AAVALPAYQ 25 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHTTTHH
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 8999999887777776 456677553
No 7
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=9.76 E-value=1.4e+02 Score=22.49 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=29.0
Q ss_pred CCCCCCCcchhhhhhhhc-ccceeccccccccCcchhHHHHHHHHHHHHHhhc
Q 038033 1 MSQAKTPFQGMIKDFKVR-AACYKQDWIGIRCTGLRVCVWMAILLFLLAIFNA 52 (465)
Q Consensus 1 ~~~~~~~f~G~~~Dik~R-~p~Y~sD~~d~~~~~~~vgiW~ai~~~lla~~na 52 (465)
|+|...++++.++.+|+= +| +.++-.++...|.+-+.++.+++.+.|.
T Consensus 1 m~~~~~f~~~v~~ElkKV~WP----tr~e~~~~T~vViv~~~i~~~~i~~vD~ 49 (65)
T 3din_D 1 MEKLRKFFREVIAEAKKISWP----SRKELLTSFGVVLVILAVTSVYFFVLDF 49 (65)
T ss_dssp ---------CHHHHHHHHHHH----HCCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcccCc----CHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999743 55 5666677777788888877777777664
No 8
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=8.79 E-value=1.5e+02 Score=22.37 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=16.1
Q ss_pred CCCCCCCcchhhhhhhhcccceeccccccccCcchhHHHHHHHHHHHHHhhc
Q 038033 1 MSQAKTPFQGMIKDFKVRAACYKQDWIGIRCTGLRVCVWMAILLFLLAIFNA 52 (465)
Q Consensus 1 ~~~~~~~f~G~~~Dik~R~p~Y~sD~~d~~~~~~~vgiW~ai~~~lla~~na 52 (465)
|+|...++++.++.+|+= -|-+.++-.++...|.+-+.++.+.+.+.|.
T Consensus 1 m~k~~~f~~~v~~ElkKV---~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~ 49 (65)
T 3dl8_C 1 MEKLKEFLKGVRDELKRV---VWPSRELVVKATISVIIFSLAIGVYLWILDL 49 (65)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcc---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999743 2335566666777777777777777777664
No 9
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Probab=8.47 E-value=39 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.1
Q ss_pred hhhccchhhHHHHHH
Q 038033 57 NRFIRMAEELFGLLI 71 (465)
Q Consensus 57 ~yiTRFTeEiF~~lI 71 (465)
+|+-||+|+.||+=+
T Consensus 49 ~yIvRFSEDsFGmDV 63 (128)
T 2hg6_A 49 RYIVRFSEDSFGMDV 63 (128)
T ss_dssp EEEEESCGGGCSSSS
T ss_pred eEEEEecccccCCcc
Confidence 588899999998643
No 10
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=6.79 E-value=81 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.7
Q ss_pred cccccccCCCCC-Ccccc-----hhhhHhhhhhh
Q 038033 212 MAQQKEFNLRNP-STYHY-----DILLLGIKQTW 239 (465)
Q Consensus 212 ivn~~e~kLkKg-~gyH~-----Dl~llGi~~~~ 239 (465)
+-+-..++|.+| .|||| |.+|+++.|+.
T Consensus 37 V~Dw~~~~L~~PPrGy~Wvrv~~dyvLVai~tG~ 70 (83)
T 2l1s_A 37 IKQWQQRNLPAPDAGSHWTYMGGNYVLITDTEGK 70 (83)
T ss_dssp ECCCTTSSCCCCCTTEEEEECSSEEEEEETTTCB
T ss_pred cCCHhHCCCCccCCCCEEEEECCcEEEEECCCCe
Confidence 335567999987 69999 88888877653
Done!