Query 038033
Match_columns 465
No_of_seqs 123 out of 599
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 11:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 42.0 4.9 0.00036 31.6 1.9 26 396-425 1-26 (158)
2 d2gdwa1 a.28.1.2 (A:8-83) Pept 9.8 14 0.00099 26.8 -2.0 42 324-366 8-51 (76)
3 d2hg6a1 d.364.1.1 (A:1-106) Hy 9.7 15 0.0011 28.4 -1.7 15 57-71 27-41 (106)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 8.0 94 0.0069 18.5 1.8 11 66-76 9-19 (30)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 5.0 1.3E+02 0.0098 17.9 1.4 15 65-79 14-28 (32)
6 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 4.3 1.1E+02 0.0082 22.1 0.7 23 9-32 20-42 (75)
7 d1qr0a2 d.150.1.1 (A:102-228) 4.0 1.2E+02 0.0085 23.1 0.7 17 434-450 17-33 (127)
8 d1qled_ f.23.8.1 (D:) Bacteria 3.1 3.6E+02 0.026 17.5 2.4 15 38-52 29-43 (43)
9 d2arha1 d.108.1.9 (A:1-196) Hy 3.0 3.3E+02 0.024 23.0 2.6 53 15-70 53-111 (196)
10 d1m56d_ f.23.8.1 (D:) Bacteria 3.0 4.1E+02 0.03 17.0 2.5 17 36-52 26-42 (42)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=41.98 E-value=4.9 Score=31.60 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhhhhhccchhhhhhhhHHHH
Q 038033 396 FTVFQLVYFLFCFGIAWTPIAGVLFPLPFF 425 (465)
Q Consensus 396 FT~iQ~~~~~~~~~i~~~~~aai~FP~ii~ 425 (465)
||++|++..+++.||+ +++++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999888888887 6788887643
No 2
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=9.83 E-value=14 Score=26.85 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=30.9
Q ss_pred eeeeecccccccc-cc-chhhhhhhhhhhcccCCCchHHHHHHHh
Q 038033 324 NEQRVSNTLQSLL-IP-NSVLWGYFAYWAFDNVPGNQFWERLLLL 366 (465)
Q Consensus 324 ~EQRvS~ll~~lL-IP-~~VL~GlFlyMG~~sL~Gnq~~~Ri~ll 366 (465)
.|+++.++.+.+| +| ..+- -=|+=+|.+||...|+..|+.--
T Consensus 8 ~E~~l~~i~~~vL~~~~i~~~-~~f~~lG~dSl~a~~l~~~i~~~ 51 (76)
T d2gdwa1 8 VESKLAEIWERVLGVSGIGIL-DNFFQIGGHSLKAMAVAAQVHRE 51 (76)
T ss_dssp HHHHHHHHHHHHTTSSCCCTT-TTSSTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCC-CCHHHcCCChHHHHHHHHHHHHH
Confidence 4667777777777 54 3333 44778999999999999998743
No 3
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.65 E-value=15 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=11.6
Q ss_pred hhhccchhhHHHHHH
Q 038033 57 NRFIRMAEELFGLLI 71 (465)
Q Consensus 57 ~yiTRFTeEiF~~lI 71 (465)
+|+-||+|+.||+=+
T Consensus 27 ~~ivRFSEDsFGmDV 41 (106)
T d2hg6a1 27 RYIVRFSEDSFGMDV 41 (106)
T ss_dssp EEEEESCGGGCSSSS
T ss_pred eEEEEecccccCCcc
Confidence 578899999888643
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.01 E-value=94 Score=18.47 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=7.8
Q ss_pred HHHHHHHHHHh
Q 038033 66 LFGLLIAVLFI 76 (465)
Q Consensus 66 iF~~lIsviFi 76 (465)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67788877654
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.05 E-value=1.3e+02 Score=17.91 Aligned_cols=15 Identities=20% Similarity=0.678 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhhhc
Q 038033 65 ELFGLLIAVLFIQEA 79 (465)
Q Consensus 65 EiF~~lIsviFi~ea 79 (465)
--||.-+++||-.++
T Consensus 14 lffgiavgiifaiks 28 (32)
T d2e74e1 14 LFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHhhheeeEEE
Confidence 347778888887776
No 6
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.25 E-value=1.1e+02 Score=22.07 Aligned_cols=23 Identities=0% Similarity=-0.113 Sum_probs=17.1
Q ss_pred chhhhhhhhcccceeccccccccC
Q 038033 9 QGMIKDFKVRAACYKQDWIGIRCT 32 (465)
Q Consensus 9 ~G~~~Dik~R~p~Y~sD~~d~~~~ 32 (465)
++|++-|+.++|||+.+ .++|.-
T Consensus 20 ~eIy~~i~~~fpy~r~~-~~gWkN 42 (75)
T d1kq8a_ 20 AEINEYLMGKFPFFRGS-YTGWRN 42 (75)
T ss_dssp HHHHHHHHHHCTTGGGT-CSCCHH
T ss_pred HHHHHHHHHhCcccccC-Cccchh
Confidence 67888999999999764 445543
No 7
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=4.04 E-value=1.2e+02 Score=23.13 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.1
Q ss_pred hcCCcCChhhhhhcccc
Q 038033 434 ILPKIFHPDHLQELNAS 450 (465)
Q Consensus 434 llpr~F~~~eL~~LD~~ 450 (465)
++.|+|+++|.+.|.+.
T Consensus 17 ~~~~~fs~~E~~~l~~~ 33 (127)
T d1qr0a2 17 IAKRFFSKTEYSDLLAK 33 (127)
T ss_dssp HHSSSSCHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHC
Confidence 57899999999988653
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.14 E-value=3.6e+02 Score=17.45 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhc
Q 038033 38 VWMAILLFLLAIFNA 52 (465)
Q Consensus 38 iW~ai~~~lla~~na 52 (465)
+=+.++++.+|++|+
T Consensus 29 i~~i~~liflAi~ns 43 (43)
T d1qled_ 29 ILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 333444555566663
No 9
>d2arha1 d.108.1.9 (A:1-196) Hypothetical protein Aq_1966 {Aquifex aeolicus [TaxId: 63363]}
Probab=2.98 E-value=3.3e+02 Score=22.99 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhhcccceeccccccccCcch---hHHHHHHHHHHHHHhh---cccchhhhccchhhHHHHH
Q 038033 15 FKVRAACYKQDWIGIRCTGLR---VCVWMAILLFLLAIFN---ACNVINRFIRMAEELFGLL 70 (465)
Q Consensus 15 ik~R~p~Y~sD~~d~~~~~~~---vgiW~ai~~~lla~~n---as~l~~yiTRFTeEiF~~l 70 (465)
+++|-||| .-|...|++... +++++-+.-.++-++- +--++-|+.+ .|++..|
T Consensus 53 F~GR~pYY-~PWiEif~~~p~lr~~~~~~~~e~~ly~~l~~~~g~lfVeY~~D--~ET~~~L 111 (196)
T d2arha1 53 FLGRKPYW-QPWVEVFGVNPNLRNVFFGSEAERKLYEFLSEHFGRIFVEYFED--KETTYEL 111 (196)
T ss_dssp ECCBTTTB-CCEEEEECCCGGGHHHHTTSHHHHHHHHHHHTTCSEEEEECTTC--HHHHHHH
T ss_pred ecCCCCCc-cchhhhhccChhhhhcccCcHHHHHHHHHHHhhCCceEEEEecC--HHHHHHH
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.98 E-value=4.1e+02 Score=17.05 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhc
Q 038033 36 VCVWMAILLFLLAIFNA 52 (465)
Q Consensus 36 vgiW~ai~~~lla~~na 52 (465)
+++=+.++++.+|++|+
T Consensus 26 ~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 26 AAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Done!